Citrus Sinensis ID: 045279
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SS94 | 820 | Cell division control pro | yes | no | 0.921 | 0.789 | 0.630 | 0.0 | |
| O14325 | 779 | Uncharacterized AAA domai | yes | no | 0.807 | 0.727 | 0.478 | 1e-158 | |
| Q54SY2 | 867 | Putative ribosome biogene | yes | no | 0.792 | 0.641 | 0.470 | 1e-154 | |
| Q9DBY8 | 855 | Nuclear valosin-containin | yes | no | 0.800 | 0.657 | 0.453 | 1e-150 | |
| O15381 | 856 | Nuclear valosin-containin | no | no | 0.800 | 0.656 | 0.455 | 1e-150 | |
| Q07844 | 837 | Ribosome biogenesis ATPas | yes | no | 0.843 | 0.707 | 0.433 | 1e-147 | |
| P54774 | 807 | Cell division cycle prote | no | no | 0.777 | 0.676 | 0.426 | 1e-136 | |
| Q96372 | 805 | Cell division cycle prote | N/A | no | 0.773 | 0.674 | 0.425 | 1e-135 | |
| Q9LZF6 | 810 | Cell division control pro | no | no | 0.774 | 0.671 | 0.421 | 1e-135 | |
| Q9SCN8 | 815 | Cell division control pro | no | no | 0.770 | 0.663 | 0.417 | 1e-133 |
| >sp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/671 (63%), Positives = 516/671 (76%), Gaps = 24/671 (3%)
Query: 37 TSEDAVYGEKVEP-EFDLMKSMLRDSYSESKITRRKS----EEKNIEFEVMPRK--IDLV 89
TSEDAVYGEK+ P FDL+ LRD+Y++ + +K EKN+E E + K L
Sbjct: 140 TSEDAVYGEKLSPPRFDLINDSLRDNYAKLNSSSKKPIGSPAEKNVEVETVSNKGRSKLA 199
Query: 90 NAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQL 149
+R+ E K S+ G G G E++G +GP F+D GG++ +L+EL+M V+ P+ +P+
Sbjct: 200 TMGARK-EAKVSLSLSGATGNGDLEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEP 258
Query: 150 PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDL 209
+ +GV+P +GIL +GPPGCGKTKLA+AIANE GVPFYKISATEV+SGVSGASEENIR+L
Sbjct: 259 FKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIREL 318
Query: 210 FSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269
FSKAYRTAPSIVFIDEIDAI SKREN QREME+RIVTQL+TCMD PG++ K +
Sbjct: 319 FSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMD------GPGNKGDK-N 371
Query: 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329
A DS G+VLVIGATNRPDA+DPALRR GRF+ EI L PDE+AR +ILSV+ + LR+EG
Sbjct: 372 APDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEG 431
Query: 330 SFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPW 389
FD +IAR TPGFVGADL ++A AG A+KRI+D RKSE SG+ + W R PW
Sbjct: 432 PFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDG---EDDKSWLRMPW 488
Query: 390 LPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRI 449
EE+E+L + M+DFEEA +VQ S REGFS +P+VKW+DVGGLD+LR +F+RYIVR I
Sbjct: 489 PEEELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPI 548
Query: 450 KFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL 509
K P+ Y+ FGVDLETGFLLYGPPGCGKTLIAKA ANEAGANF+HIKG ELLNKYVGESEL
Sbjct: 549 KKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESEL 608
Query: 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVI 569
A+RTLF RARTC+PC++FFDEVDALTT RGKEG WVVERLLNQ L+ELDG ++R V+VI
Sbjct: 609 AIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGERRN-VYVI 667
Query: 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKF 629
GATNRPDV+D A LRPGRFG LLYVPLP DER IL+A+ARKKPID SVDL IA++
Sbjct: 668 GATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNN- 726
Query: 630 CENLSGADLAAMMNEAAMAALEDKLISSKSS----SDVTPFTIKLTHFEQALSKISPSVS 685
CE SGADLA ++ +A A+E+ + SS+SS +D+T TIK HFEQALS +SPSV+
Sbjct: 727 CEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVN 786
Query: 686 ELQIQRYKTLS 696
+ Q + Y LS
Sbjct: 787 KQQRRHYDALS 797
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Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion). Arabidopsis thaliana (taxid: 3702) |
| >sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16E9.10c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/614 (47%), Positives = 390/614 (63%), Gaps = 47/614 (7%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
D+GG++ + EL V +P+ HP++ Q+ G+ P G+LL+GPPGCGKT LA+A+ANE
Sbjct: 173 LSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANEL 232
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
GVPF ISA +VSG+SG SE+ +R++F +A AP ++FIDEIDA+ KRE+ QREMER
Sbjct: 233 GVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMER 292
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV Q +TCMDE + +D KP VLVIGATNRPD++D ALRR GRFDR
Sbjct: 293 RIVAQFLTCMDELS-----------FEKTDGKP--VLVIGATNRPDSLDSALRRAGRFDR 339
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EI L VP ++AR +IL + + L++ G FD ++A+ TPG+VGADL AL AG +A+KR
Sbjct: 340 EICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIKR 399
Query: 363 II-------------DQRKSEL-------SGNSIAEQHSDDWWR------QPWLPEEMER 396
I D R +EL S +S+ HS R P PEE+E
Sbjct: 400 IFNEISPLNKLDLNSDPRFNELDSDMALDSNDSLPLDHSSIIQRYLNAHPDPLSPEELEP 459
Query: 397 LTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYE 456
L I DF EA VQPSS+REGF+ +P V W ++G L +R E IV+ IK PE Y+
Sbjct: 460 LAICPQDFIEALAKVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQ 519
Query: 457 EFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFS 516
G+ TG LL+GPPGCGKTL+AKAVANE+ ANFI I+GPELLNKYVGESE AVR +F
Sbjct: 520 SVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFL 579
Query: 517 RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576
RAR SPC++FFDE+DA+ +R R++N LL ELDG R GV+VI ATNRPD
Sbjct: 580 RARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPD 639
Query: 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGA 636
++D A+LRPGR K L V LP ER IL+ L ++ P+ + V+L + + + C N SGA
Sbjct: 640 IIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGA 699
Query: 637 DLAAMMNEAAMAALEDKLISSKSS--------SDVTPFTIKLTHFEQALSKISPSVSELQ 688
DLAA++ EAA+ AL + + +S S + P + FE A I PSVS+
Sbjct: 700 DLAALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTNADFELAFKNIKPSVSDRD 759
Query: 689 IQRYKTLSETFKAA 702
Q+Y+ L++ + +A
Sbjct: 760 RQKYQRLAKRWSSA 773
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54SY2|NVL_DICDI Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/614 (47%), Positives = 384/614 (62%), Gaps = 58/614 (9%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F +LGG+ES L +++ + P+ HP++ LGV P GILL+GP GCGKT LA AIA E
Sbjct: 215 FSNLGGVESCLRDIREHIEYPICHPEIYSHLGVEPPRGILLHGPSGCGKTLLAKAIAGEL 274
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
VP + ISATE+ SGVSG SE +R LFS A AP I+FIDEIDAIA KRE+ ++MER
Sbjct: 275 KVPLFAISATEITSGVSGESEARVRTLFSNAIAQAPCIIFIDEIDAIAPKRESASKDMER 334
Query: 243 RIVTQLMTCMDESHRLV------QPGDQ---------------------------KSKSD 269
RIV+QL+TCMD + L +P +Q +K
Sbjct: 335 RIVSQLLTCMDSLNYLSSNNSTNEPNEQTEQQQQQQQDIIEVDSQATTTTTASNNNNKQQ 394
Query: 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329
+D K G+V+VIGATNRP+++D ALR GRFD+EI LG+PD+ AR +IL V+T +R+E
Sbjct: 395 KNDFKKGHVIVIGATNRPESLDTALRIGGRFDKEICLGIPDQTARCKILKVITSKMRLEN 454
Query: 330 SFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSG---------------N 374
+FD +IA TPG+VGAD+ L +A ++ RI S L+G N
Sbjct: 455 NFDYEEIATLTPGYVGADINLLVKEAATNSVNRIF---TSNLNGASSSSSSSSSSTTNIN 511
Query: 375 SIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGL 434
+I ++P PE++ L I M DF++A K V P+++REGF+ IPNV W+DVG L
Sbjct: 512 NIGLSTELLISKEPLEPEKLNSLYIEMIDFKKALKKVVPAAKREGFATIPNVTWDDVGAL 571
Query: 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494
+R E I+R I++P++Y+ G+D G L+YGPPGCGKTL+AKA+A+E ANFI +
Sbjct: 572 SGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAKAIASECQANFISV 631
Query: 495 KGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLN 551
KGPELLNKYVGESE AVR +F RA SPC++FFDE DAL KR G ER++N
Sbjct: 632 KGPELLNKYVGESERAVRQVFQRAAASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVN 691
Query: 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611
QLL E+DG +KR VF+I ATNRPD++D A+ RPGR K++YVPLP+P+ER IL+ L
Sbjct: 692 QLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTH 751
Query: 612 KKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLT 671
K PI VDL + C + SGADL+ ++ EAA A+ ++ P T+ +
Sbjct: 752 KIPIHQDVDLIKVGTDLRCHSFSGADLSLLVKEAANHAISRGF----DNNSTEPDTVTME 807
Query: 672 HFEQALSKISPSVS 685
F ALSKI PSVS
Sbjct: 808 DFIFALSKIKPSVS 821
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Involved in ribosome biogenesis. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9DBY8|NVL_MOUSE Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/608 (45%), Positives = 382/608 (62%), Gaps = 46/608 (7%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+F+D+GG ++ L+E+ ++++ + HP++ Q LGV P G+LL+GPPGCGKT LAHAIA E
Sbjct: 262 KFEDVGGNDATLKEV-CKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 320
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+P K++A E+VSGVSG SE+ +R+LF +A AP IVFIDEIDAI KRE ++ME
Sbjct: 321 LDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDME 380
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRIV QL+TCMD+ + + + VLVIGATNRPD++DPALRR GRFD
Sbjct: 381 RRIVAQLLTCMDDLNNV--------------AATARVLVIGATNRPDSLDPALRRAGRFD 426
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361
RE+ LG+PDE AR +IL L R LR+ +F+ +A TPGFVGADL AL +A A+
Sbjct: 427 REVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVN 486
Query: 362 RII------------------DQRKSELSGNSIAEQHSDDWWR--------QPWLPEEME 395
R++ + + E G + D+ R P E+M+
Sbjct: 487 RVLMKQQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQ 546
Query: 396 RLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455
L I + DF A VQPS++REGF +PNV W D+G L+ +R E I+ ++ P+++
Sbjct: 547 GLCIELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQF 606
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 515
G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVGESE AVR +F
Sbjct: 607 RTLGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF 666
Query: 516 SRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574
RA+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+ VF++ ATNR
Sbjct: 667 QRAKNSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLETRQQVFILAATNR 725
Query: 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCE 631
PD++D A+LRPGR K L+V LP P +R IL+ + + K P+D+ V+L TIA C
Sbjct: 726 PDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCN 785
Query: 632 NLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQR 691
+GADL A++ EA++ AL ++ + K+ + HFE A K+ PS+S
Sbjct: 786 CYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSISIKDQVM 845
Query: 692 YKTLSETF 699
Y+ L +
Sbjct: 846 YEALQRSL 853
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Mus musculus (taxid: 10090) |
| >sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 277/608 (45%), Positives = 386/608 (63%), Gaps = 46/608 (7%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+F+D+GG + L+E+ ++++ + HP++ LGV P G+LL+GPPGCGKT LAHAIA E
Sbjct: 263 KFEDVGGNDMTLKEV-CKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 321
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+P K++A E+VSGVSG SE+ +R+LF +A AP I+FIDEIDAI KRE ++ME
Sbjct: 322 LDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDME 381
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRIV QL+TCMD+ + + + VLVIGATNRPD++DPALRR GRFD
Sbjct: 382 RRIVAQLLTCMDDLNNV--------------AATARVLVIGATNRPDSLDPALRRAGRFD 427
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361
REI LG+PDE +R +IL L R LR+ +FD +A TPGFVGADL AL +A A+
Sbjct: 428 REICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVN 487
Query: 362 RII-----DQRKS-------------ELSGNSIAEQHSDDWWR--------QPWLPEEME 395
R++ Q+K+ E G + D+ R P E+M+
Sbjct: 488 RVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQ 547
Query: 396 RLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455
L I + DF A VQPS++REGF +PNV W D+G L+ +R E I+ ++ P+++
Sbjct: 548 GLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQF 607
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 515
+ G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVGESE AVR +F
Sbjct: 608 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF 667
Query: 516 SRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574
RA+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+ VF++ ATNR
Sbjct: 668 QRAKNSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLEARQQVFIMAATNR 726
Query: 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCE 631
PD++D A+LRPGR K L+V LP P +R IL+ + + K P+D V+L IA C+
Sbjct: 727 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCD 786
Query: 632 NLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQR 691
+GADL+A++ EA++ AL ++ KS ++ + HFE+A K+ S+S+
Sbjct: 787 CYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQIM 846
Query: 692 YKTLSETF 699
Y+ L E+
Sbjct: 847 YERLQESL 854
|
Homo sapiens (taxid: 9606) |
| >sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 289/666 (43%), Positives = 402/666 (60%), Gaps = 74/666 (11%)
Query: 92 KSREVEMKKEESVKGGMGLGAEELKGKEGP---RFQDLGGMESVLEELKMEVI-VPLYHP 147
K+ EV+ K+ S +G + +++K P + LGGM+ V+ +L ME+I +P+ HP
Sbjct: 170 KTEEVKKSKKRSKEGTCKVKRQKIKEDRSPPNSSLKSLGGMDDVVAQL-MELIGLPILHP 228
Query: 148 QLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIR 207
++ GV P G+LL+GPPGCGKT +A+A+A E VPF ISA VVSG+SG SE+ IR
Sbjct: 229 EIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIR 288
Query: 208 DLFSKAYRTAPSIVFIDEIDAIASKREN-LQREMERRIVTQLMTCMDESHRLVQPGDQKS 266
DLF +A AP +VF DEIDAI KR+ QREMERRIV QL+T MDE
Sbjct: 289 DLFDEARSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELTM--------- 339
Query: 267 KSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR 326
+ ++ KP V++IGATNRPD++D ALRR GRFDREI L VP+E +R+ IL ++ NL+
Sbjct: 340 --EKTNGKP--VIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLK 395
Query: 327 VEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDW-- 384
++G+ D K+A+ TPGFVGADL AL AG A+KRI + S + A S+D
Sbjct: 396 IDGAIDFAKLAKLTPGFVGADLKALVTAAGTCAIKRIFQTYANIKSTPTTATDSSEDNME 455
Query: 385 ---------------------------------WRQPWLPEEMERLTITMTDFEEATKMV 411
+ +P E++ L+I DF +A +
Sbjct: 456 IDETANGDESSLKNTANMIDPLPLSVVQQFIRNYPEPLSGEQLSLLSIKYEDFLKALPTI 515
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
QP+++REGF+ +P+V W +VG L +R E + IV+ IK PE YE+ G+ G LL+GP
Sbjct: 516 QPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGP 575
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PGCGKTL+AKAVANE+ ANFI IKGPELLNKYVGESE ++R +F+RAR PC++FFDE+
Sbjct: 576 PGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDEL 635
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DAL +R R++N LL ELDG + R+G+FVIGATNRPD++D A+LRPGR K
Sbjct: 636 DALVPRRDTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKS 695
Query: 592 LYVPLPTPDERGLILEALARKK--PIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649
L++ LP +E+ I++ L + P+ VD I +++ C N SGADLAA++ E+++ A
Sbjct: 696 LFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLA 755
Query: 650 LEDKLISSKSSSDVT------------------PFTIKLTHFEQALSKISPSVSELQIQR 691
L+ K S+ V + ++ F AL KI PSVS+ +
Sbjct: 756 LKRKFFQSEEIQSVLDNDLDKEFEDLSVGVSGEEIIVTMSDFRSALRKIKPSVSDKDRLK 815
Query: 692 YKTLSE 697
Y L++
Sbjct: 816 YDRLNK 821
|
Involved in ribosome biogenesis. Seems to be required for restructuring nucleoplasmic 60S pre-ribosomal particles to make them competent for nuclear export. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/598 (42%), Positives = 369/598 (61%), Gaps = 52/598 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+ + +++ V +PL HPQL + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + APSI+FIDEID+IA KRE E+ER
Sbjct: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD KS++ +V+VIGATNRP+++DPALRR GRFDR
Sbjct: 327 RIVSQLLTLMD---------GLKSRA--------HVIVIGATNRPNSIDPALRRFGRFDR 369
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EI +GVPDE R+++L + T+N+++ DL +IA+ T G+VGADLAAL +A ++
Sbjct: 370 EIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D D + E + + +T F+ A PS+ RE
Sbjct: 430 KMD---------------VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVE 474
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV WED+GGL+ ++ E + ++ PE++E+FG+ G L YGPPGCGKTL+AKA
Sbjct: 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 534
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK-- 540
+ANE ANFI +KGPELL + GESE VR +F +AR +PC+LFFDE+D++ T+RG
Sbjct: 535 IANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 594
Query: 541 -EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
+ G +R+LNQLL E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 595 GDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL---IS 656
D R I +A RK PI +VDL +A + + SGAD+ + A A+ + + I
Sbjct: 655 DSRHQIFKACLRKSPIAKNVDLRALA--RHTQGFSGADITEICQRACKYAIRENIEKDIE 712
Query: 657 SKSSSDVTP------------FTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
+ S P IK HFE+++ SVS+ I++Y+ ++T + +
Sbjct: 713 RERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQS 770
|
Probably functions in cell division and growth processes. Glycine max (taxid: 3847) |
| >sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/595 (42%), Positives = 370/595 (62%), Gaps = 52/595 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+ + +++ V +PL HPQL + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + APSI+FIDEID+IA KRE E+ER
Sbjct: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD KS++ +V+V+GATNRP+++DPALRR GRFDR
Sbjct: 327 RIVSQLLTLMD---------GLKSRA--------HVIVMGATNRPNSIDPALRRFGRFDR 369
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EI +GVPDE R+++L + T+N+++ DL +I++ T G+VGADLAAL +A ++
Sbjct: 370 EIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEAALQCIRE 429
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D +L ++I E + + +T F+ A PS+ RE
Sbjct: 430 KMDVL--DLEDDTID-------------AEVLNSMAVTNEHFQTALGTSNPSALRETVVE 474
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV WED+GGL+ ++ E + ++ PE++E+FG+ G L YGPPGCGKTL+AKA
Sbjct: 475 VPNVSWEDIGGLENVKRELQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 534
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK-- 540
+ANE ANFI +KGPELL + GESE VR +F +AR +PC+LFFDE+D++ T+RG
Sbjct: 535 IANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSS 594
Query: 541 -EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
+ G +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 595 GDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL----- 654
D R I +A RK P+ +DL +A K + SGAD+ + A A+ + +
Sbjct: 655 DSRHQIFKACLRKSPLSKDIDLRALA--KHTQGFSGADVTEICQRACKYAIRENIEKDIE 712
Query: 655 ---------ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700
S D P IK HFE+++ SVS+ I++Y+ ++T +
Sbjct: 713 REKRRQENPDSMDEDVDEVP-EIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQ 766
|
Probably functions in cell division and growth processes. Capsicum annuum (taxid: 4072) |
| >sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=1 SV=2 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/596 (42%), Positives = 371/596 (62%), Gaps = 52/596 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+ + +++ V +PL HPQL + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 206 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + APSI+FIDEID+IA KRE E+ER
Sbjct: 266 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVER 325
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD KS++ +V+V+GATNRP+++DPALRR GRFDR
Sbjct: 326 RIVSQLLTLMD---------GLKSRA--------HVIVMGATNRPNSIDPALRRFGRFDR 368
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EI +GVPDE R+++L + T+N+++ DL +I++ T G+VGADLAAL +A ++
Sbjct: 369 EIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIRE 428
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D +L +SI E + + ++ F A PS+ RE
Sbjct: 429 KMDV--IDLEDDSID-------------AEILNSMAVSNEHFHTALGNSNPSALRETVVE 473
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV WED+GGL+ ++ E + ++ PE++E+FG+ G L YGPPGCGKTL+AKA
Sbjct: 474 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKA 533
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK-- 540
+ANE ANFI +KGPELL + GESE VR +F +AR +PC+LFFDE+D++ T+RG
Sbjct: 534 IANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSA 593
Query: 541 -EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
+ G +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 594 GDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDE 653
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL---IS 656
D R I +A RK P+ VD+ +A K+ + SGAD+ + A A+ + + I
Sbjct: 654 DSRLNIFKACLRKSPVAKDVDVTALA--KYTQGFSGADITEICQRACKYAIRENIEKDIE 711
Query: 657 SKSSSDVTPFT------------IKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700
++ P I+ HFE+++ SVS+ I++Y+ ++T +
Sbjct: 712 NERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQ 767
|
Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/597 (41%), Positives = 370/597 (61%), Gaps = 56/597 (9%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+ + +++ V +PL HPQL + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + APSI+FIDEID+IA KRE E+ER
Sbjct: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD KS++ +V+V+GATNRP+++DPALRR GRFDR
Sbjct: 327 RIVSQLLTLMD---------GLKSRA--------HVIVMGATNRPNSIDPALRRFGRFDR 369
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EI +GVPDE R+++L + T+N+++ DL ++++ T G+VGADLAAL +A ++
Sbjct: 370 EIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIRE 429
Query: 363 ---IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG 419
+ID E+ E + + ++ F+ A PS+ RE
Sbjct: 430 KMDVIDLDDEEIDA------------------EILNSMAVSNDHFQTALGNSNPSALRET 471
Query: 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLI 479
+PNV WED+GGL+ ++ E + ++ PE++E+FG+ G L YGPPGCGKTL+
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
Query: 480 AKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539
AKA+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++ T+RG
Sbjct: 532 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591
Query: 540 K---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596
+ G +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR +L+Y+PL
Sbjct: 592 NSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651
Query: 597 PTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL-- 654
P + R I ++ RK P+ VDL +A K+ + SGAD+ + + A+ + +
Sbjct: 652 PDEESRYQIFKSCLRKSPVAKDVDLRALA--KYTQGFSGADITEICQRSCKYAIRENIEK 709
Query: 655 -ISSKSSSDVTP----------FTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700
I + +P IK HFE+++ SVS+ I++Y+ ++T +
Sbjct: 710 DIEKERKRAESPEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQ 766
|
Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion). Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | ||||||
| 297738362 | 769 | unnamed protein product [Vitis vinifera] | 0.991 | 0.905 | 0.757 | 0.0 | |
| 225425863 | 825 | PREDICTED: cell division control protein | 0.947 | 0.806 | 0.781 | 0.0 | |
| 449457301 | 816 | PREDICTED: cell division control protein | 0.944 | 0.812 | 0.772 | 0.0 | |
| 449480824 | 816 | PREDICTED: LOW QUALITY PROTEIN: cell div | 0.944 | 0.812 | 0.770 | 0.0 | |
| 356525960 | 791 | PREDICTED: cell division control protein | 0.930 | 0.825 | 0.754 | 0.0 | |
| 255563409 | 828 | Protein cdcH, putative [Ricinus communis | 0.934 | 0.792 | 0.734 | 0.0 | |
| 224126871 | 822 | predicted protein [Populus trichocarpa] | 0.917 | 0.783 | 0.713 | 0.0 | |
| 357445505 | 806 | Cell division control protein-like prote | 0.967 | 0.842 | 0.676 | 0.0 | |
| 242091720 | 775 | hypothetical protein SORBIDRAFT_10g00087 | 0.914 | 0.828 | 0.673 | 0.0 | |
| 115465954 | 770 | Os06g0109400 [Oryza sativa Japonica Grou | 0.918 | 0.837 | 0.672 | 0.0 |
| >gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/717 (75%), Positives = 601/717 (83%), Gaps = 21/717 (2%)
Query: 3 LEDEHVKRRRQTDHDLPST--SSSTSSSSEEEDG-VSTSE--DAVYGEKVEPEFDLMKSM 57
L+ H +++ + L S + SS + EDG VSTSE DA+Y EKVEPE DLMK M
Sbjct: 55 LQQPHRSTKKKKNEPLTSNLDDDNQDSSCDSEDGAVSTSENADAIYEEKVEPECDLMKEM 114
Query: 58 LRDSYSESKITRRKS--------EEKNIEFEVMPR---KIDLVNAKSREVEMKKEES--V 104
+R +Y++S +S E+KNIE EV + KI +V + K V
Sbjct: 115 MRATYAKSASKNVESKNENPRLIEDKNIELEVGDKQKSKIGMVEGGGVGKGLGKGSKKEV 174
Query: 105 KGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLY 164
KG + G E + GK+GP F DLGGM+SV+E+LKMEVIVPLY+P+LP+WLGVRPMAGILL+
Sbjct: 175 KGSVSTGVE-VSGKDGPMFSDLGGMKSVVEDLKMEVIVPLYYPELPRWLGVRPMAGILLH 233
Query: 165 GPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFID 224
GPPGCGKTKLAHAIANET VPFYKISATEVVSGVSGASEENIR+LFSKAYRTAPSIVFID
Sbjct: 234 GPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFID 293
Query: 225 EIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT 284
EIDAIASKRENL REMERRIVTQLMTCMDES+RLVQP D +S+ S KPGYVLVIGAT
Sbjct: 294 EIDAIASKRENLNREMERRIVTQLMTCMDESNRLVQPADGDKESEISHHKPGYVLVIGAT 353
Query: 285 NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344
NRPDAVDPALRRPGRFDREI LGVPDE+AR ILSV+TRNLR+EGSFDL K+ARSTPGFV
Sbjct: 354 NRPDAVDPALRRPGRFDREIALGVPDESARADILSVITRNLRLEGSFDLAKLARSTPGFV 413
Query: 345 GADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDF 404
GADLAALANKAGNLAMKRIID+RK ELS E+H +DWWRQPWLPEEME+L+ITM DF
Sbjct: 414 GADLAALANKAGNLAMKRIIDRRKFELSRELTDEEHIEDWWRQPWLPEEMEKLSITMADF 473
Query: 405 EEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLET 464
EEA KMVQPSSRREGFS IPNV+WEDVGGLD+LR EFDRYIVRRIK+PE+YEEFGVDLET
Sbjct: 474 EEAAKMVQPSSRREGFSTIPNVRWEDVGGLDFLRQEFDRYIVRRIKYPEDYEEFGVDLET 533
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC 524
GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC
Sbjct: 534 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC 593
Query: 525 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584
ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD+R+GVFVIGATNRP+VMDRAVLR
Sbjct: 594 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADQRRGVFVIGATNRPEVMDRAVLR 653
Query: 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNE 644
PGRFGKLLYVPLP+PDERGLIL+ALARKKPID SVDL I Q + C NLSGADL+A+MNE
Sbjct: 654 PGRFGKLLYVPLPSPDERGLILKALARKKPIDASVDLIAIGQKEACNNLSGADLSALMNE 713
Query: 645 AAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701
AAMAALE+KL + SS +TI HF+QAL KISPSVS Q Y+ LSE+FKA
Sbjct: 714 AAMAALEEKL--ADCSSGAISWTINAKHFDQALGKISPSVSNKQKHFYQVLSESFKA 768
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425863|ref|XP_002266185.1| PREDICTED: cell division control protein 48 homolog C-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/683 (78%), Positives = 585/683 (85%), Gaps = 18/683 (2%)
Query: 34 GVSTSE--DAVYGEKVEPEFDLMKSMLRDSYSESKITRRKS--------EEKNIEFEVMP 83
VSTSE DA+Y EKVEPE DLMK M+R +Y++S +S E+KNIE EV
Sbjct: 145 AVSTSENADAIYEEKVEPECDLMKEMMRATYAKSASKNVESKNENPRLIEDKNIELEVGD 204
Query: 84 R---KIDLVNAKSREVEMKKEES--VKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKM 138
+ KI +V + K VKG + G E + GK+GP F DLGGM+SV+E+LKM
Sbjct: 205 KQKSKIGMVEGGGVGKGLGKGSKKEVKGSVSTGVE-VSGKDGPMFSDLGGMKSVVEDLKM 263
Query: 139 EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198
EVIVPLY+P+LP+WLGVRPMAGILL+GPPGCGKTKLAHAIANET VPFYKISATEVVSGV
Sbjct: 264 EVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGV 323
Query: 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258
SGASEENIR+LFSKAYRTAPSIVFIDEIDAIASKRENL REMERRIVTQLMTCMDES+RL
Sbjct: 324 SGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLNREMERRIVTQLMTCMDESNRL 383
Query: 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQIL 318
VQP D +S+ S KPGYVLVIGATNRPDAVDPALRRPGRFDREI LGVPDE+AR IL
Sbjct: 384 VQPADGDKESEISHHKPGYVLVIGATNRPDAVDPALRRPGRFDREIALGVPDESARADIL 443
Query: 319 SVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAE 378
SV+TRNLR+EGSFDL K+ARSTPGFVGADLAALANKAGNLAMKRIID+RK ELS E
Sbjct: 444 SVITRNLRLEGSFDLAKLARSTPGFVGADLAALANKAGNLAMKRIIDRRKFELSRELTDE 503
Query: 379 QHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLR 438
+H +DWWRQPWLPEEME+L+ITM DFEEA KMVQPSSRREGFS IPNV+WEDVGGLD+LR
Sbjct: 504 EHIEDWWRQPWLPEEMEKLSITMADFEEAAKMVQPSSRREGFSTIPNVRWEDVGGLDFLR 563
Query: 439 HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498
EFDRYIVRRIK+PE+YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE
Sbjct: 564 QEFDRYIVRRIKYPEDYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 623
Query: 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558
LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD
Sbjct: 624 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 683
Query: 559 GADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS 618
GAD+R+GVFVIGATNRP+VMDRAVLRPGRFGKLLYVPLP+PDERGLIL+ALARKKPID S
Sbjct: 684 GADQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALARKKPIDAS 743
Query: 619 VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678
VDL I Q + C NLSGADL+A+MNEAAMAALE+KL + SS +TI HF+QAL
Sbjct: 744 VDLIAIGQKEACNNLSGADLSALMNEAAMAALEEKL--ADCSSGAISWTINAKHFDQALG 801
Query: 679 KISPSVSELQIQRYKTLSETFKA 701
KISPSVS Q Y+ LSE+FKA
Sbjct: 802 KISPSVSNKQKHFYQVLSESFKA 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457301|ref|XP_004146387.1| PREDICTED: cell division control protein 48 homolog C-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/674 (77%), Positives = 582/674 (86%), Gaps = 11/674 (1%)
Query: 34 GVSTSEDAVYGEKVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEV-----MPRKIDL 88
VSTSEDA+YGEKVEPEFDLMK MLR SY+ESK + + EK++E EV + KI++
Sbjct: 149 AVSTSEDAIYGEKVEPEFDLMKLMLRTSYAESKKLKNEHLEKSMELEVAIDDKVAEKINV 208
Query: 89 VNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQ 148
N + E+ ++E L EE+ EGP F+DLGGM+SVL+ELKMEVIVPLYHPQ
Sbjct: 209 GNEGNANKEISRKEKQSS---LNREEI---EGPWFKDLGGMKSVLDELKMEVIVPLYHPQ 262
Query: 149 LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRD 208
+P WLGVRPMAGILL+GPPGCGKTKLAHAIANETGVPFYKISATE++SGVSGASEENIR+
Sbjct: 263 VPLWLGVRPMAGILLHGPPGCGKTKLAHAIANETGVPFYKISATEIMSGVSGASEENIRE 322
Query: 209 LFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268
LFSKAYRTAPSIVFIDEIDAIASKRENLQREME+RIVTQLMTCMD H+LV D SK
Sbjct: 323 LFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDGFHKLVDSKDASSKD 382
Query: 269 DASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE 328
D S+ +PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENAR +IL+VLT NLR+E
Sbjct: 383 DNSNVRPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLE 442
Query: 329 GSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQP 388
GSFDL+KIAR+TPGFVGADL ALANKAGNLAMKRIIDQRK ELS + A +H +DWWRQP
Sbjct: 443 GSFDLLKIARATPGFVGADLTALANKAGNLAMKRIIDQRKCELSTDCAANEHIEDWWRQP 502
Query: 389 WLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRR 448
WLPEEME+L ITM DFEEA +MVQPS RREGFSAIP+VKWEDVGGL+ LR EFDRY+VRR
Sbjct: 503 WLPEEMEKLAITMIDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFDRYVVRR 562
Query: 449 IKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE 508
+K+PE+YE FGVDL TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE
Sbjct: 563 VKYPEDYEGFGVDLATGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE 622
Query: 509 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568
LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA++R+GVFV
Sbjct: 623 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRRGVFV 682
Query: 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSK 628
IGATNRP+V+D A+LRPGRFGKLLYVPLP P ERGL+L+AL RKKPID SVDL I Q +
Sbjct: 683 IGATNRPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALGRKKPIDVSVDLLAIGQME 742
Query: 629 FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQ 688
CEN SGADLAA+MNEAAMAALE+KL S+ + TIK+ HFE+ L+KISPSVSE Q
Sbjct: 743 ACENFSGADLAALMNEAAMAALEEKLTLDNSNIESASCTIKMVHFERGLTKISPSVSEKQ 802
Query: 689 IQRYKTLSETFKAA 702
Y+ LS++ KAA
Sbjct: 803 KHFYEILSKSLKAA 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480824|ref|XP_004156006.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 48 homolog C-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/674 (77%), Positives = 581/674 (86%), Gaps = 11/674 (1%)
Query: 34 GVSTSEDAVYGEKVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEV-----MPRKIDL 88
VSTSEDA+YGEKVEPEFDLMK MLR SY+ESK + + EK++E EV + KI++
Sbjct: 149 AVSTSEDAIYGEKVEPEFDLMKLMLRTSYAESKKLKNEHLEKSMELEVAIDDKVAEKINV 208
Query: 89 VNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQ 148
N + E+ ++E L EE+ EGP F+DLGGM+SVL+ELKMEVIVPLYHPQ
Sbjct: 209 GNEGNANKEILRKEKQSS---LNREEI---EGPWFKDLGGMKSVLDELKMEVIVPLYHPQ 262
Query: 149 LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRD 208
+P +GVRPMAGILL+GPPGCGKTKLAHAIANETGVPFYKISATE++SGVSGASEENIR+
Sbjct: 263 VPLXVGVRPMAGILLHGPPGCGKTKLAHAIANETGVPFYKISATEIMSGVSGASEENIRE 322
Query: 209 LFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268
LFSKAYRTAPSIVFIDEIDAIASKRENLQREME+RIVTQLMTCMD H+LV D SK
Sbjct: 323 LFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDGFHKLVDSKDASSKD 382
Query: 269 DASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE 328
D S+ +PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENAR +IL+VLT NLR+E
Sbjct: 383 DNSNVRPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARAEILTVLTSNLRLE 442
Query: 329 GSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQP 388
GSFDL+KIAR+TPGFVGADL ALANKAGNLAMKRIIDQRK ELS + A +H +DWWRQP
Sbjct: 443 GSFDLLKIARATPGFVGADLTALANKAGNLAMKRIIDQRKCELSTDCAANEHIEDWWRQP 502
Query: 389 WLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRR 448
WLPEEME+L ITMTDFEEA +MVQPS RREGFSAIP+VKWEDVGGL+ LR EFDRY+VRR
Sbjct: 503 WLPEEMEKLAITMTDFEEAIQMVQPSLRREGFSAIPSVKWEDVGGLEQLRAEFDRYVVRR 562
Query: 449 IKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE 508
+K+PE+YE FGVDL TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE
Sbjct: 563 VKYPEDYEGFGVDLATGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE 622
Query: 509 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568
LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA++R+GVFV
Sbjct: 623 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRRGVFV 682
Query: 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSK 628
IGATNRP+V+D A+LRPGRFGKLLYVPLP P ERGL+L+AL RKKPID SVDL I Q +
Sbjct: 683 IGATNRPEVIDPAILRPGRFGKLLYVPLPGPTERGLVLKALGRKKPIDVSVDLLAIGQME 742
Query: 629 FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQ 688
CEN SGADLAA+MNEAAM ALE+KL S+ + TIK+ HFE+ L+KISPSVSE Q
Sbjct: 743 ACENFSGADLAALMNEAAMVALEEKLTLDNSNIESASCTIKMVHFERGLTKISPSVSEKQ 802
Query: 689 IQRYKTLSETFKAA 702
Y+ LS++ KAA
Sbjct: 803 KHFYEILSKSLKAA 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525960|ref|XP_003531589.1| PREDICTED: cell division control protein 48 homolog C-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/671 (75%), Positives = 577/671 (85%), Gaps = 18/671 (2%)
Query: 35 VSTSEDAVYGEKVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRKID-LVNAKS 93
VSTSEDA+YGEKVEPEFDLMK+MLR SY+ K+ +EEKN+E EV D LVN +
Sbjct: 136 VSTSEDAIYGEKVEPEFDLMKTMLRKSYTPKKVA---AEEKNVELEVGNSSKDTLVNEER 192
Query: 94 REVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWL 153
+EV+ SV K+GPRF+DLGGM+ VLEELKMEVIVPL+HPQLP+ L
Sbjct: 193 KEVKGSSSGSVSNR----------KDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPRQL 242
Query: 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA 213
GVRPMAGILL+GPPGCGKTKLAHAIA+ETG+PFY+ISATEVVSGVSGASEENIR+LF+KA
Sbjct: 243 GVRPMAGILLHGPPGCGKTKLAHAIAHETGLPFYQISATEVVSGVSGASEENIRELFAKA 302
Query: 214 YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273
YR+AP+IVFIDEIDAIASKRENLQREME+RIVTQLMTCMD+S+RL+QP D +S D
Sbjct: 303 YRSAPAIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQPADD-VESSGDDH 361
Query: 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDL 333
PGYVLVIGATNRPDAVDPALRRPGRFDREI++G PDE+AR +ILSVLT +LR+EG FDL
Sbjct: 362 HPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGNPDESAREEILSVLTCDLRLEGLFDL 421
Query: 334 VKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEE 393
KIAR+T GFVGADLAAL +KAGNLAMKRIID+RK ELS + + +H++DWWR+PW EE
Sbjct: 422 RKIARATSGFVGADLAALVDKAGNLAMKRIIDERKRELSQD-LTSEHAEDWWREPWSVEE 480
Query: 394 MERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPE 453
+ +L I M+DFEEA VQPS RREGFS+IPNVKW+DVGGLD LR EF+RYIVRRIK+PE
Sbjct: 481 INKLAIKMSDFEEAANKVQPSLRREGFSSIPNVKWDDVGGLDLLRKEFERYIVRRIKYPE 540
Query: 454 EYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRT 513
+YEE GVDLETGFLLYGPPGCGKTLIAKAVANEAGA FIHIKGPELLNKYVGESELAVRT
Sbjct: 541 DYEELGVDLETGFLLYGPPGCGKTLIAKAVANEAGATFIHIKGPELLNKYVGESELAVRT 600
Query: 514 LFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573
+FSRARTC+PCILFFDE+DALTTKRGKEGGWVVERLLNQLL+ELDGA++RKGVFVIGATN
Sbjct: 601 MFSRARTCAPCILFFDEIDALTTKRGKEGGWVVERLLNQLLVELDGAEQRKGVFVIGATN 660
Query: 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633
RP+VMDRAVLRPGRFGKLLYVPLP+PDER LIL+ALARKK +D SVDL IA+ + CENL
Sbjct: 661 RPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALARKKAVDASVDLSAIAKMEACENL 720
Query: 634 SGADLAAMMNEAAMAALEDKLISSKSSSDVTPF--TIKLTHFEQALSKISPSVSELQIQR 691
SGADLAA+MNEAAMAALE++L S +++ D TIK HFE ALSK+SPSVS+ Q Q
Sbjct: 721 SGADLAALMNEAAMAALEERLTSIETTCDTLTIKRTIKRHHFEVALSKVSPSVSDRQKQY 780
Query: 692 YKTLSETFKAA 702
Y+ LSE FKAA
Sbjct: 781 YQHLSEGFKAA 791
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563409|ref|XP_002522707.1| Protein cdcH, putative [Ricinus communis] gi|223538057|gb|EEF39669.1| Protein cdcH, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/677 (73%), Positives = 575/677 (84%), Gaps = 21/677 (3%)
Query: 37 TSEDAVYGEKVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFE-----VMPRKIDLVNA 91
TSED +YGE+VEPEFDLM+SMLR+SYS+ K EKNIE + KID+VN+
Sbjct: 162 TSEDGIYGERVEPEFDLMRSMLRESYSKEK-------EKNIEVDDASNTKTTTKIDIVNS 214
Query: 92 KSREVEMKKEESVKG-----GMGLGAEELKG-KEGPRFQDLGGMESVLEELKMEVIVPLY 145
E+E + E K G EE KG K+GPRF+DLGGM +VLEEL+MEV +PLY
Sbjct: 215 GKGELEGESREKGKEKGKVLNSGADVEEGKGGKDGPRFRDLGGMRAVLEELEMEVFLPLY 274
Query: 146 HPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN 205
HP +P+ LGV P+ GILL+GPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN
Sbjct: 275 HPHVPRRLGVNPIGGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN 334
Query: 206 IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265
IR+LFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQL+TCMDE HRLV+P +
Sbjct: 335 IRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLLTCMDEFHRLVRPSNAN 394
Query: 266 SKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNL 325
S S++++ KPGYVLVIGATNRPDA+DPALRRPGRFDREI LGVPDENARV+ILSVLT+
Sbjct: 395 SDSESTNQKPGYVLVIGATNRPDAIDPALRRPGRFDREIRLGVPDENARVEILSVLTKKC 454
Query: 326 RVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWW 385
+EGS DL++IARSTPGFVGADL AL +KAGNLAM+RI+ QRKSEL+G ++ +DWW
Sbjct: 455 TLEGSLDLLQIARSTPGFVGADLDALVDKAGNLAMRRILSQRKSELTGECADVEYIEDWW 514
Query: 386 RQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYI 445
+ PWLPEE+E+L ITM DFE+A K+VQPSSRREGFS +PNVKWEDVGGL +R+EFD +I
Sbjct: 515 KIPWLPEELEKLAITMADFEQAAKVVQPSSRREGFSTVPNVKWEDVGGLHSIRNEFDLHI 574
Query: 446 VRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505
VRRIK+PE+Y++FGV+ ETG LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG
Sbjct: 575 VRRIKYPEDYQKFGVNSETGILLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 634
Query: 506 ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKG 565
ESELAVRTLF+RARTCSPC+LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD+R G
Sbjct: 635 ESELAVRTLFTRARTCSPCVLFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADQRPG 694
Query: 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA 625
VF+IGATNRP+VMD AVLRPGRFGKLLYVPLP+ D+RGLIL+ALA+ KPID +VDL TI
Sbjct: 695 VFIIGATNRPEVMDPAVLRPGRFGKLLYVPLPSSDDRGLILKALAKGKPIDPNVDLSTIG 754
Query: 626 QSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVS 685
+ + CENLSGADL +M+EAAM+AL + + SSSD + TIK THFEQAL+KISPSVS
Sbjct: 755 KMEACENLSGADLKKLMDEAAMSALVE---AKGSSSDESSSTIKATHFEQALTKISPSVS 811
Query: 686 ELQIQRYKTLSETFKAA 702
Q++ YK SE+F++A
Sbjct: 812 HKQVKYYKVWSESFRSA 828
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126871|ref|XP_002319947.1| predicted protein [Populus trichocarpa] gi|222858323|gb|EEE95870.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/676 (71%), Positives = 558/676 (82%), Gaps = 32/676 (4%)
Query: 49 PEFDLMKSMLRDSYSESKITRRKSEEKNIEFEV-------MPRKIDLVNAKSREVEMKKE 101
P+FDLMKSMLR+SY + EKN+E E+ + K+D++ ++R V +K
Sbjct: 157 PKFDLMKSMLRESYGVA--------EKNMEVELANDRKESITSKVDMIE-RNRGVGKQKG 207
Query: 102 ESVKGGMG-----LGAEELKGKEG-PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGV 155
E ++G +G LG E+ KGKEG PRF+DLGG+ +LEEL+MEV +PLYHP +P LGV
Sbjct: 208 EDLEGSLGKLKGGLG-EDAKGKEGGPRFKDLGGLSGILEELEMEVFLPLYHPNVPLRLGV 266
Query: 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
P++GILL+GPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR
Sbjct: 267 SPISGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 326
Query: 216 TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275
TAPSI+FIDEIDAIASKRENLQREMERRIVTQLMTCMDE HRL QP D S S++S+ P
Sbjct: 327 TAPSIIFIDEIDAIASKRENLQREMERRIVTQLMTCMDEHHRLGQPSDDSSSSESSNRIP 386
Query: 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVK 335
G VLVIGATNRPDAVDPALRRPGRFDREI LGVPDE ARVQILSVLT+N +EGS D+++
Sbjct: 387 GNVLVIGATNRPDAVDPALRRPGRFDREINLGVPDEKARVQILSVLTKNCTLEGSLDILQ 446
Query: 336 IARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEME 395
IARSTPGFVGADL AL N AGNLAM+R+ QRKSELSG ++ ++DWW+QPW PEEME
Sbjct: 447 IARSTPGFVGADLNALVNMAGNLAMRRVASQRKSELSGQLTEKEDNEDWWKQPWSPEEME 506
Query: 396 RLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455
+L ITM DFE+A K+VQPSS+REGFS IPNVKWEDVGGLD +R EFD YI+ RIK+P++Y
Sbjct: 507 KLAITMADFEKAAKLVQPSSKREGFSTIPNVKWEDVGGLDDIRDEFDLYIISRIKYPDDY 566
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 515
++FGV+LETG LLYGPPGCGKT+IAKA ANEAGANFIH+KGPELLNKYVGESELAVRTLF
Sbjct: 567 QKFGVNLETGILLYGPPGCGKTMIAKAAANEAGANFIHVKGPELLNKYVGESELAVRTLF 626
Query: 516 SRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575
SRARTCSPCI+FFDEVDALTT RGKEGGWVVERLLNQLLIELDGAD+R G+F+IGATNRP
Sbjct: 627 SRARTCSPCIIFFDEVDALTTMRGKEGGWVVERLLNQLLIELDGADQRPGIFIIGATNRP 686
Query: 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 635
+VMD AVLRPGRFGKLLYVPLP+ ++RGLIL+ALA+ KPID SVDL I Q + C+NLSG
Sbjct: 687 EVMDPAVLRPGRFGKLLYVPLPSSEDRGLILKALAKGKPIDPSVDLAAIGQMEACKNLSG 746
Query: 636 ADLAAMMNEAAMAALED---KLISSKSSSDVT------PFTIKLTHFEQALSKISPSVSE 686
ADL +M EAAM AL++ + +++S +T I THFEQAL KISPSVSE
Sbjct: 747 ADLRKLMEEAAMTALKEAKRQRCLNETSGTITAAQNEPAVNITATHFEQALGKISPSVSE 806
Query: 687 LQIQRYKTLSETFKAA 702
QIQ YK SE+FKA
Sbjct: 807 KQIQYYKAWSESFKAT 822
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445505|ref|XP_003593030.1| Cell division control protein-like protein [Medicago truncatula] gi|355482078|gb|AES63281.1| Cell division control protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/713 (67%), Positives = 570/713 (79%), Gaps = 34/713 (4%)
Query: 3 LEDEHVKRRRQTDHDLPSTSSSTSSSSEEEDGVSTSEDAVYGEKVEPEFDLMKSMLRDSY 62
LE H+++R T S+SS SS ++E VSTSEDA+Y EKVEP FDLMK MLR SY
Sbjct: 115 LEARHIEKRMNTQ---VSSSSEEDSSDDDEGAVSTSEDAIYSEKVEPAFDLMKDMLRSSY 171
Query: 63 SESKITRRKSEEKNIEFEV--MPRKIDLVNAKSRE---VEMKKEESVKGGMGLGAE---- 113
+ +K +EKN+E ++ + VNA RE V K + + G GLG+
Sbjct: 172 TGNK---EGIKEKNVELDIGNSSKATITVNADGRESKSVGKGKGKQLSKGSGLGSNVGGG 228
Query: 114 --ELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGK 171
E+KG GP F+DLGGM +LEEL M+ IV L +P+LP+ LGV+P+ GILL+GPPGCGK
Sbjct: 229 CVEVKGNGGPMFKDLGGMNGILEELMMD-IVSLINPELPKHLGVKPVTGILLHGPPGCGK 287
Query: 172 TKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231
T+LAHAIANETG+PF++ISATEVVSGVSGASEE IR+LF KA RTAPSIVFIDEIDAIAS
Sbjct: 288 TRLAHAIANETGLPFHRISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIAS 347
Query: 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVD 291
KRE+LQREME+RIVTQLMT MDE + SD GYVLVIGATNRPD++D
Sbjct: 348 KREDLQREMEKRIVTQLMTSMDEP-------------ETSDESRGYVLVIGATNRPDSLD 394
Query: 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351
PALRRPGRFDRE +GVPDE+AR +ILSVLTRN++++GSFDL KIARSTPGFVGADLAAL
Sbjct: 395 PALRRPGRFDREFFVGVPDESAREEILSVLTRNIKLDGSFDLRKIARSTPGFVGADLAAL 454
Query: 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411
ANKAGNLAMKRIID+RK ELS + ++E ++ WWR+PWLPEE+ +L I M+DFEEA MV
Sbjct: 455 ANKAGNLAMKRIIDERKHELSQDLMSE-NTKGWWREPWLPEEITKLAIKMSDFEEAVIMV 513
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
QPS+RREGFS+IPNVKWEDVGGLD LRH+F+RYIV R+K P+ YE G++LE+GFLL+GP
Sbjct: 514 QPSARREGFSSIPNVKWEDVGGLDSLRHDFNRYIVMRVKKPQYYEGIGMNLESGFLLFGP 573
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF+RARTC+PC+LFFDEV
Sbjct: 574 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFNRARTCAPCVLFFDEV 633
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DALTTKRGKEGGWV+ERLLNQLLIELDGA++R+GVFVIGATNRPDVMD A+LRPGRFGKL
Sbjct: 634 DALTTKRGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPDVMDPALLRPGRFGKL 693
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651
LYVPLP+PD+R LIL+ALAR K ID SVDL I + CENLSGADLA +MNEA MAAL+
Sbjct: 694 LYVPLPSPDDRVLILKALARNKHIDSSVDLSAIGRMDACENLSGADLAELMNEAVMAALD 753
Query: 652 DKL--ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
+KL I + + TI+ +HFE AL+K SPSVS Q + Y+ L+ + KAA
Sbjct: 754 EKLASIETTCDTLTDTLTIRTSHFEVALTKASPSVSATQREYYERLARSLKAA 806
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242091720|ref|XP_002436350.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] gi|241914573|gb|EER87717.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/659 (67%), Positives = 522/659 (79%), Gaps = 17/659 (2%)
Query: 49 PEFDLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGM 108
P FDL KS++R +Y+ R + E + E R I + + + + G
Sbjct: 127 PTFDLTKSIIRSNYAAQTPKRNQQLEIEVTAEKPRRLITADGGGGGDAKPEAAPAAAEGF 186
Query: 109 GLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPG 168
G +G +GPRF DLGG+E+V+EEL MEV+VPL HP+LP LGVRP+AG+LL+GPPG
Sbjct: 187 G------RGDKGPRFADLGGLEAVIEELMMEVVVPLCHPELPHRLGVRPVAGLLLHGPPG 240
Query: 169 CGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDA 228
CGKT LAHAIANETGVPFYKISA EVVSGVSGASEENIR LF KAYRTAPSIVFIDEIDA
Sbjct: 241 CGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRTAPSIVFIDEIDA 300
Query: 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD 288
IASKRENLQREMERRIVTQLMTCMD+ H+ + G +++S+ KPGYV+VIGATNRPD
Sbjct: 301 IASKRENLQREMERRIVTQLMTCMDQFHQNIGSGSGNLDAESSEKKPGYVIVIGATNRPD 360
Query: 289 AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADL 348
AVD ALRRPGRFDREI LGVPDENAR QIL +LT++LR+EG FDL KIAR+TPGFVGADL
Sbjct: 361 AVDQALRRPGRFDREISLGVPDENARKQILKMLTQHLRLEGEFDLFKIARATPGFVGADL 420
Query: 349 AALANKAGNLAMKRIIDQRK----SELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDF 404
AL +KAGNLAMKRIID+R+ E GN+ + DWWRQPW E+E L ITM DF
Sbjct: 421 KALVDKAGNLAMKRIIDERRVQYRREHDGNT-----NHDWWRQPWDESEVEGLHITMDDF 475
Query: 405 EEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLET 464
EEATKMVQPS RREGFS++P+V W+DVGGLD LR EFDR I+R IK PE+YE FGV+++
Sbjct: 476 EEATKMVQPSLRREGFSSVPDVTWDDVGGLDSLRKEFDRCIIRCIKHPEDYEVFGVNMQA 535
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC 524
GFLL+GPPGCGKTLIAKAVA+EAGANFIHIKGPELLNKYVGESE VR +F+RART SPC
Sbjct: 536 GFLLFGPPGCGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESESEVRKIFTRARTNSPC 595
Query: 525 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584
ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD+R+GV+VIGATNR DV+D AVLR
Sbjct: 596 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADQRQGVYVIGATNRIDVIDDAVLR 655
Query: 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNE 644
PGRFGK YVPLP DER IL+A AR KP VDL +A+ C NL+GADLA+++NE
Sbjct: 656 PGRFGKKHYVPLPGADERVSILKAHARSKPFSADVDLDALARRAECNNLTGADLASLVNE 715
Query: 645 AAMAALEDKL--ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701
AAMAALE++L + + +SS + I+++HFE+ALSKI PSVSE QI+ Y+ LS+ + +
Sbjct: 716 AAMAALEERLEFLENGTSSMSSSCLIEISHFERALSKIKPSVSEQQIKHYEALSKRYSS 774
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115465954|ref|NP_001056576.1| Os06g0109400 [Oryza sativa Japonica Group] gi|55296101|dbj|BAD67691.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|55296176|dbj|BAD67894.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|113594616|dbj|BAF18490.1| Os06g0109400 [Oryza sativa Japonica Group] gi|222634830|gb|EEE64962.1| hypothetical protein OsJ_19854 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/657 (67%), Positives = 519/657 (78%), Gaps = 12/657 (1%)
Query: 51 FDLMKSMLRDSYSESKITRRKSEEKNIEFEVM---PRKIDLVNAKSREVEMKKEESVKGG 107
+D+ KSMLR Y+ R + +E E+ PR+ L+ + K ES
Sbjct: 121 YDVTKSMLRTQYASQTPKRDTGSNQQLEIEIAAEKPRR--LITSDGGAGGEAKPESAPPS 178
Query: 108 MGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPP 167
G +G +GP F DLGGMESV+E+L MEV+VPL HP++P+WLGV+P+AG+LL+GPP
Sbjct: 179 EGGD----RGGKGPTFSDLGGMESVIEQLMMEVVVPLCHPEVPRWLGVKPVAGLLLHGPP 234
Query: 168 GCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEID 227
GCGKT LAHAIANETGVPFYKISA EVVSGVSGASEENIR LF KAYRTAPSIVFIDEID
Sbjct: 235 GCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSLFKKAYRTAPSIVFIDEID 294
Query: 228 AIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP 287
AIASKRENLQREMERRIVTQLMTCMDE H+ + G S++++ KPGYV+VIGATNRP
Sbjct: 295 AIASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVIVIGATNRP 354
Query: 288 DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGAD 347
DAVD ALRRPGRFDREI LGVPDE AR +IL +LTRNLR+EG DL+KIAR+T FVGAD
Sbjct: 355 DAVDQALRRPGRFDREISLGVPDEYARKKILMMLTRNLRLEGQLDLLKIARATSSFVGAD 414
Query: 348 LAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEA 407
L AL +KAGNLAMKRIID+R+++ E DWWRQPW E+E L+ITM DFEEA
Sbjct: 415 LKALVDKAGNLAMKRIIDRRRAQFC-QEHDENSKHDWWRQPWDANEIEGLSITMDDFEEA 473
Query: 408 TKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFL 467
TKMVQPS RREGFS+IP+V W+DVGGLD LR EFDRYI+R IK PEEY+ FG++++ GFL
Sbjct: 474 TKMVQPSLRREGFSSIPDVTWDDVGGLDSLRKEFDRYIIRCIKQPEEYKTFGLNMQAGFL 533
Query: 468 LYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILF 527
L+GPPGCGKTLIAKAVA+EAGANFIHIKGPELLNKYVGESE VR +F RA+T +PCILF
Sbjct: 534 LFGPPGCGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESESEVRKIFIRAQTNTPCILF 593
Query: 528 FDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGR 587
FDEVDALTTKRGKEGGWVVERLLNQLLIELDGA +RKGVFVIGATNR DV+D A LRPGR
Sbjct: 594 FDEVDALTTKRGKEGGWVVERLLNQLLIELDGAGERKGVFVIGATNRIDVIDDAALRPGR 653
Query: 588 FGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647
FGK YVPLP DER IL ALAR KPI SVDL +A+ + C+NL+GADLA+M+NEAAM
Sbjct: 654 FGKKHYVPLPGADERVSILRALARNKPISSSVDLGALARREECKNLTGADLASMVNEAAM 713
Query: 648 AALEDKL--ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
AALE++L + + SS + I+L HFE+AL+K+ PSVSE Q + Y+ L + + A+
Sbjct: 714 AALEERLEFLENGESSMSSSSAIELPHFERALAKMQPSVSEQQRRHYEALCKKYSAS 770
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | ||||||
| TAIR|locus:2084163 | 820 | CDC48C "cell division cycle 48 | 0.915 | 0.784 | 0.590 | 1.3e-196 | |
| UNIPROTKB|E1BT72 | 858 | NVL "Uncharacterized protein" | 0.444 | 0.363 | 0.45 | 2.4e-127 | |
| UNIPROTKB|J9P5D7 | 855 | NVL "Uncharacterized protein" | 0.444 | 0.364 | 0.429 | 2.4e-126 | |
| ZFIN|ZDB-GENE-040426-2871 | 796 | nvl "nuclear VCP-like" [Danio | 0.893 | 0.787 | 0.418 | 3.7e-126 | |
| RGD|1311270 | 855 | Nvl "nuclear VCP-like" [Rattus | 0.799 | 0.656 | 0.438 | 7e-125 | |
| UNIPROTKB|H0Y8B6 | 739 | NVL "Nuclear valosin-containin | 0.887 | 0.843 | 0.408 | 1.7e-124 | |
| UNIPROTKB|O15381 | 856 | NVL "Nuclear valosin-containin | 0.799 | 0.655 | 0.429 | 2.7e-124 | |
| SGD|S000003957 | 837 | RIX7 "Putative ATPase of the A | 0.410 | 0.344 | 0.446 | 3.1e-124 | |
| CGD|CAL0000102 | 827 | RIX7 [Candida albicans (taxid: | 0.441 | 0.374 | 0.478 | 1.2e-123 | |
| UNIPROTKB|Q5AGG2 | 827 | RIX7 "Putative uncharacterized | 0.441 | 0.374 | 0.478 | 1.2e-123 |
| TAIR|locus:2084163 CDC48C "cell division cycle 48C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
Identities = 394/667 (59%), Positives = 474/667 (71%)
Query: 41 AVYGEKVEP-EFDLMKSMLRDSYSESKITRRKS----EEKNIEFEVMPRK--IDLVNAKS 93
AVYGEK+ P FDL+ LRD+Y++ + +K EKN+E E + K L +
Sbjct: 144 AVYGEKLSPPRFDLINDSLRDNYAKLNSSSKKPIGSPAEKNVEVETVSNKGRSKLATMGA 203
Query: 94 REVEMKKEESVXXXXXXXXXXXXXXXXPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWL 153
R+ E K S+ P F+D GG++ +L+EL+M V+ P+ +P+ + +
Sbjct: 204 RK-EAKVSLSLSGATGNGDLEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKI 262
Query: 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA 213
GV+P +GIL +GPPGCGKTKLA+AIANE GVPFYKISATEV+SGVSGASEENIR+LFSKA
Sbjct: 263 GVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKA 322
Query: 214 YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXX 273
YRTAPSIVFIDEIDAI SKREN QREME+RIVTQL+TCMD PG
Sbjct: 323 YRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDG------PGNKGDKNAPDSS 376
Query: 274 XPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDL 333
G+VLVIGATNRPDA+DPALRR GRF+ EI L PDE+AR +ILSV+ + LR+EG FD
Sbjct: 377 A-GFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDK 435
Query: 334 VKIARSTPGFVXXXXXXXXXXXXXXXMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEE 393
+IAR TPGFV +KRI+D RKSE SG+ + W R PW EE
Sbjct: 436 KRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDG---EDDKSWLRMPWPEEE 492
Query: 394 MERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPE 453
+E+L + M+DFEEA +VQ S REGFS +P+VKW+DVGGLD+LR +F+RYIVR IK P+
Sbjct: 493 LEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPD 552
Query: 454 EYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRT 513
Y+ FGVDLETGFLLYGPPGCGKTLIAKA ANEAGANF+HIKG ELLNKYVGESELA+RT
Sbjct: 553 IYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRT 612
Query: 514 LFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573
LF RARTC+PC++FFDEVDALTT RGKEG WVVERLLNQ L+ELDG ++R V+VIGATN
Sbjct: 613 LFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGERRN-VYVIGATN 671
Query: 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633
RPDV+D A LRPGRFG LLYVPLP DER IL+A+ARKKPID SVDL IA++ CE
Sbjct: 672 RPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNN-CEGF 730
Query: 634 SGXXXXXXXXXXXXXXXXXKLISSKSS----SDVTPFTIKLTHFEQALSKISPSVSELQI 689
SG + SS+SS +D+T TIK HFEQALS +SPSV++ Q
Sbjct: 731 SGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQR 790
Query: 690 QRYKTLS 696
+ Y LS
Sbjct: 791 RHYDALS 797
|
|
| UNIPROTKB|E1BT72 NVL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 144/320 (45%), Positives = 203/320 (63%)
Query: 386 RQPWLPEE-MERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRY 444
+Q LPE+ +++L I M DF A VQPS++REGF IP+V W D+G L+ +R E
Sbjct: 537 KQDPLPEDQLQKLCIEMNDFIVALSSVQPSAKREGFVTIPDVTWADIGALEDVREELTMA 596
Query: 445 IVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504
I+ ++ PE+++ G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YV
Sbjct: 597 ILAPVRNPEQFKALGLTTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYV 656
Query: 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKR 563
GESE AVR +F RAR +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R
Sbjct: 657 GESERAVRQVFQRARNSAPCVIFFDEVDALCPRRSDRESGASV-RVVNQLLTEMDGLENR 715
Query: 564 KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVD 620
+ VF++ ATNRPD++D A+LRPGR K LYV LP P++R IL+ + + + P+D V+
Sbjct: 716 QQVFIMAATNRPDIIDPAILRPGRLDKTLYVGLPPPEDRLAILKTITKDGTRPPLDTDVN 775
Query: 621 LHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLI--SSKSSSDVTPFTIKLTHFEQALS 678
L IA S+ C+ +G ++ ++KS + I HFE+A
Sbjct: 776 LEEIAYSQQCDCYTGADLSALVREASICALRQEMALPTTKSKKEKGEIKISRKHFEEAFR 835
Query: 679 KISPSVSELQIQRYKTLSET 698
K+ SVS+ Y+ L ++
Sbjct: 836 KVKSSVSKKDQIMYEELRQS 855
|
|
| UNIPROTKB|J9P5D7 NVL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 2.4e-126, Sum P(3) = 2.4e-126
Identities = 136/317 (42%), Positives = 194/317 (61%)
Query: 386 RQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYI 445
+ P E+++ L I DF A VQPS++REGF +P+V W D+G L+ +R E I
Sbjct: 537 QDPLSEEQLQGLCIEWNDFTVALSSVQPSAKREGFVTVPSVTWADIGALEDIREELTMAI 596
Query: 446 VRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505
+ ++ PE++ G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVG
Sbjct: 597 LAPVRSPEQFRALGLMTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 656
Query: 506 ESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRK 564
ESE AVR +F RAR+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+
Sbjct: 657 ESERAVRQVFQRARSSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLEARQ 715
Query: 565 GVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDL 621
VF++ ATNRPD++D A+LRPGR K L+V LP P +R IL+ + + + P+D V+L
Sbjct: 716 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTRPPLDADVNL 775
Query: 622 HTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKIS 681
+A C+ SG +++ K D + HFE+A K+
Sbjct: 776 EALAADLRCDCYSGADLSALVREASICALRQEMMRPKGGGDRGELKVSQKHFEEAFKKVK 835
Query: 682 PSVSELQIQRYKTLSET 698
S+S+ Y+ L ++
Sbjct: 836 SSISKKDQVMYEALRQS 852
|
|
| ZFIN|ZDB-GENE-040426-2871 nvl "nuclear VCP-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
Identities = 274/654 (41%), Positives = 378/654 (57%)
Query: 55 KSMLRD-SYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEES--VXXXXXXX 111
+S+L D ES T + + +E E + + K ++E E S V
Sbjct: 157 ESILIDLCEEESSSTTNQRDSSRLEKE--KKSVKQKRQKKNKLEEDSETSAGVPAKKSKV 214
Query: 112 XXXXXXXXXPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGK 171
+F+D GG + LEE+ ++++ + HP++ Q LGV P G LL+GPPGCGK
Sbjct: 215 KGFELQFSSVKFEDFGGSDETLEEV-CKLLIHMRHPEVYQRLGVVPPRGFLLHGPPGCGK 273
Query: 172 TKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231
T LA A+A ET +P KISA E+VSGVSG SE+ +R+LF +A +AP I+FIDEIDAI
Sbjct: 274 TLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCILFIDEIDAITP 333
Query: 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVD 291
KRE ++MERRIV QL+TCMD+ + +++P VLVIGATNRPD++D
Sbjct: 334 KRETASKDMERRIVAQLLTCMDDLNSMLEPAQ--------------VLVIGATNRPDSLD 379
Query: 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXX 351
PALRR GRFDREI LG+PDE AR++IL L R +R+ FD +AR TPG+V
Sbjct: 380 PALRRAGRFDREICLGIPDEGARMKILKTLCRKIRLPDDFDFRHLARLTPGYVGADLMAL 439
Query: 352 XXXXXXXXMKRIIDQRKSE--LSGNSIAEQHSDDWWRQPWLPEE-MERLTITMTDFEEAT 408
+ RI+ + +E ++ + D L E+ + L + M+DF +
Sbjct: 440 CREAAMNAVNRILLEPTTEDQITPTLALARLLDLLKSSVSLSEDQLAALCVLMSDFSSSL 499
Query: 409 KMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLL 468
VQPS++REGF+ +P+V W DVG L +R E I+ I+ PE+++ G+ G LL
Sbjct: 500 VRVQPSAKREGFATVPDVTWADVGALQDVREELHMAIMAPIQNPEQFKALGLSAPAGLLL 559
Query: 469 YGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFF 528
GPPGCGKTL+AKAVAN +G NFI +KGPELLN YVGESE AVR +F R R +PC++FF
Sbjct: 560 AGPPGCGKTLLAKAVANASGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFF 619
Query: 529 DEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRF 588
DE+DAL +R + R++NQLL E+DG + R+ VF++ ATNRPD++D AVLRPGR
Sbjct: 620 DEIDALCPRRSEHESGASVRVVNQLLTEMDGMENRRQVFIMAATNRPDIIDPAVLRPGRL 679
Query: 589 GKLLYVPLPTPDERGLILEALAR--KKP-IDDSVDLHTIAQSKFCENLSGXXXXXXXXXX 645
K LYV LP +R IL + + KP +D V L IA CE +G
Sbjct: 680 DKTLYVGLPPAADRHAILNTITKGGTKPQLDSDVSLEEIAHDARCETFTGADLSALVREA 739
Query: 646 XXXXXXXKLISSKSSSD-VTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSET 698
L +++ ++ + HFE A K+ PSVS+ Y+ L ET
Sbjct: 740 CVNALRVHLDPAQTHTESAKDIRVSRVHFEDAFKKVRPSVSKKDQLMYERLRET 793
|
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| RGD|1311270 Nvl "nuclear VCP-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
Identities = 266/607 (43%), Positives = 369/607 (60%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+F+D+GG ++ L+E+ ++++ + HP++ Q LGV P G+LL+GPPGCGKT LAHAIA E
Sbjct: 262 KFEDVGGNDATLKEV-CKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 320
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+P K++A E+VSGVSG SE+ +RDLF +A AP IVFIDEIDAI KRE ++ME
Sbjct: 321 LDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCIVFIDEIDAITPKREVASKDME 380
Query: 242 RRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRIV QL+TCMD+ + + VLV+GATNRPD++DPALRR GRFD
Sbjct: 381 RRIVAQLLTCMDDLNNVAATAR--------------VLVVGATNRPDSLDPALRRAGRFD 426
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMK 361
RE+ LG+PDE +R +IL L R LR+ +F+ +A TPGFV +
Sbjct: 427 REVCLGIPDEASRERILQTLCRKLRLPETFNFSHLAHLTPGFVGADLMALCREAAVCAVH 486
Query: 362 RII----DQRKSELS----------GNSI-AEQHS---DDWWR--------QPWLPEEME 395
R++ +Q+++E G S+ AE S D+ R P E+M+
Sbjct: 487 RVLMRRQEQQRTEPETGGLPSDGEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQMQ 546
Query: 396 RLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455
L + + DF A VQPS++REGF +PNV W DVG L+ +R E I+ ++ PE++
Sbjct: 547 GLCLELNDFIVALSEVQPSAKREGFVTVPNVTWADVGALEDIREELTMAILAPVRNPEQF 606
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 515
G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVGESE AVR +F
Sbjct: 607 RALGLVAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF 666
Query: 516 SRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574
RA+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+ VF++ ATNR
Sbjct: 667 QRAKNSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLETRQQVFILAATNR 725
Query: 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCE 631
PD++D A+LRPGR K L+V LP P +R IL+ + + K P+D+ VDL IA C+
Sbjct: 726 PDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVDLEAIANDHRCD 785
Query: 632 NLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQR 691
+G ++ K+ T+ HFE+A K+ PS+S +
Sbjct: 786 CYTGADLSALVREASLCALRQEITGQKNGIGTAELTVSHKHFEEAFRKVKPSISVKDQRM 845
Query: 692 YKTLSET 698
Y+ L +
Sbjct: 846 YEALQRS 852
|
|
| UNIPROTKB|H0Y8B6 NVL "Nuclear valosin-containing protein-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.7e-124, Sum P(2) = 1.7e-124
Identities = 276/675 (40%), Positives = 388/675 (57%)
Query: 60 DSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKS-REVEMKKE-----ESVXXXXXXXXX 113
DS E + S++ ++ M RK L N S R+ E +E E+V
Sbjct: 78 DSSMEDYPDPQDSKDSSLLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARG 137
Query: 114 XXXXXXXPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTK 173
+F+D+GG + L+E+ ++++ + HP++ LGV P G+LL+GPPGCGKT
Sbjct: 138 LEFQISNVKFEDVGGNDMTLKEV-CKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTL 196
Query: 174 LAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR 233
LAHAIA E +P K++A E+VSGVSG SE+ +R+LF +A AP I+FIDEIDAI KR
Sbjct: 197 LAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKR 256
Query: 234 ENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPA 293
E ++MERRIV QL+TCMD+ + + VLVIGATNRPD++DPA
Sbjct: 257 EVASKDMERRIVAQLLTCMDDLNNVAATAR--------------VLVIGATNRPDSLDPA 302
Query: 294 LRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXX 353
LRR GRFDREI LG+PDE +R +IL L R LR+ +FD +A TPGFV
Sbjct: 303 LRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCR 362
Query: 354 XXXXXXMKRII----DQRKS-----ELSGNSIAEQH---------SDDWWR--------Q 387
+ R++ +Q+K +L + E+ D+ R
Sbjct: 363 EAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQD 422
Query: 388 PWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVR 447
P E+M+ L I + DF A VQPS++REGF +PNV W D+G L+ +R E I+
Sbjct: 423 PLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILA 482
Query: 448 RIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES 507
++ P++++ G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVGES
Sbjct: 483 PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 542
Query: 508 ELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGV 566
E AVR +F RA+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+ V
Sbjct: 543 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLEARQQV 601
Query: 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHT 623
F++ ATNRPD++D A+LRPGR K L+V LP P +R IL+ + + K P+D V+L
Sbjct: 602 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEA 661
Query: 624 IAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPS 683
IA C+ +G ++ KS ++ + HFE+A K+ S
Sbjct: 662 IAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 721
Query: 684 VSELQIQRYKTLSET 698
+S+ Y+ L E+
Sbjct: 722 ISKKDQIMYERLQES 736
|
|
| UNIPROTKB|O15381 NVL "Nuclear valosin-containing protein-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 261/607 (42%), Positives = 365/607 (60%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+F+D+GG + L+E+ ++++ + HP++ LGV P G+LL+GPPGCGKT LAHAIA E
Sbjct: 263 KFEDVGGNDMTLKEV-CKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 321
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+P K++A E+VSGVSG SE+ +R+LF +A AP I+FIDEIDAI KRE ++ME
Sbjct: 322 LDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDME 381
Query: 242 RRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRIV QL+TCMD+ + + VLVIGATNRPD++DPALRR GRFD
Sbjct: 382 RRIVAQLLTCMDDLNNVAATAR--------------VLVIGATNRPDSLDPALRRAGRFD 427
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMK 361
REI LG+PDE +R +IL L R LR+ +FD +A TPGFV +
Sbjct: 428 REICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVN 487
Query: 362 RII----DQRKS-----ELSGNSIAEQH---------SDDWWR--------QPWLPEEME 395
R++ +Q+K +L + E+ D+ R P E+M+
Sbjct: 488 RVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQ 547
Query: 396 RLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455
L I + DF A VQPS++REGF +PNV W D+G L+ +R E I+ ++ P+++
Sbjct: 548 GLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQF 607
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLF 515
+ G+ G LL GPPGCGKTL+AKAVANE+G NFI +KGPELLN YVGESE AVR +F
Sbjct: 608 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF 667
Query: 516 SRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574
RA+ +PC++FFDEVDAL +R +E G V R++NQLL E+DG + R+ VF++ ATNR
Sbjct: 668 QRAKNSAPCVIFFDEVDALCPRRSDRETGASV-RVVNQLLTEMDGLEARQQVFIMAATNR 726
Query: 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCE 631
PD++D A+LRPGR K L+V LP P +R IL+ + + K P+D V+L IA C+
Sbjct: 727 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCD 786
Query: 632 NLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQR 691
+G ++ KS ++ + HFE+A K+ S+S+
Sbjct: 787 CYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQIM 846
Query: 692 YKTLSET 698
Y+ L E+
Sbjct: 847 YERLQES 853
|
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| SGD|S000003957 RIX7 "Putative ATPase of the AAA family" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 3.1e-124, Sum P(3) = 3.1e-124
Identities = 130/291 (44%), Positives = 183/291 (62%)
Query: 375 SIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGL 434
S+ +Q ++ +P E++ L+I DF +A +QP+++REGF+ +P+V W +VG L
Sbjct: 480 SVVQQFIRNY-PEPLSGEQLSLLSIKYEDFLKALPTIQPTAKREGFATVPDVTWANVGAL 538
Query: 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494
+R E + IV+ IK PE YE+ G+ G LL+GPPGCGKTL+AKAVANE+ ANFI I
Sbjct: 539 QRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFISI 598
Query: 495 KGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554
KGPELLNKYVGESE ++R +F+RAR PC++FFDE+DAL +R R++N LL
Sbjct: 599 KGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSESSSRVVNTLL 658
Query: 555 IELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK- 613
ELDG + R+G+FVIGATNRPD++D A+LRPGR K L++ LP +E+ I++ L +
Sbjct: 659 TELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHG 718
Query: 614 -PIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDV 663
P+ VD I +++ C N SG K S+ V
Sbjct: 719 TPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQSV 769
|
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| CGD|CAL0000102 RIX7 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 155/324 (47%), Positives = 200/324 (61%)
Query: 388 PWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVR 447
P E++ L IT DF A VQPS++REGF+ IP+V W++VG L +R E IV+
Sbjct: 481 PLNQEQLAPLAITYQDFVNALPSVQPSAKREGFATIPDVTWQNVGALFKIRMELHMCIVQ 540
Query: 448 RIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES 507
IK PE Y + G+ G L++GPPGCGKTL+AKAVANE+ ANFI IKGPELLNKYVGES
Sbjct: 541 PIKKPELYLKVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGES 600
Query: 508 ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVF 567
E AVR +F RAR +PCI+FFDE+DAL +R R++N LL ELDG + RKGVF
Sbjct: 601 EKAVRQVFQRARASTPCIIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLNDRKGVF 660
Query: 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDSVDLHTIA 625
VIGATNRPD++D A+LRPGR K LY+ LPTP+ER IL+ L R P+ +VDL+ I+
Sbjct: 661 VIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSPLHANVDLNAIS 720
Query: 626 QSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSS--DVTPF--------TIKLT--HF 673
+ C N SG + ++ D + F I +T F
Sbjct: 721 RDSRCGNFSGADLSSLVKEAGVWALKKRFFQNQKIQELDSSGFYEDSIGEDDISITAEDF 780
Query: 674 EQALSKISPSVSELQIQRYKTLSE 697
+ ALS I PSVS+ RY+ L++
Sbjct: 781 DHALSSIRPSVSDRDRMRYEKLNK 804
|
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| UNIPROTKB|Q5AGG2 RIX7 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 155/324 (47%), Positives = 200/324 (61%)
Query: 388 PWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVR 447
P E++ L IT DF A VQPS++REGF+ IP+V W++VG L +R E IV+
Sbjct: 481 PLNQEQLAPLAITYQDFVNALPSVQPSAKREGFATIPDVTWQNVGALFKIRMELHMCIVQ 540
Query: 448 RIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES 507
IK PE Y + G+ G L++GPPGCGKTL+AKAVANE+ ANFI IKGPELLNKYVGES
Sbjct: 541 PIKKPELYLKVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGES 600
Query: 508 ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVF 567
E AVR +F RAR +PCI+FFDE+DAL +R R++N LL ELDG + RKGVF
Sbjct: 601 EKAVRQVFQRARASTPCIIFFDELDALVPRRDTSMSESSSRVVNTLLTELDGLNDRKGVF 660
Query: 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDSVDLHTIA 625
VIGATNRPD++D A+LRPGR K LY+ LPTP+ER IL+ L R P+ +VDL+ I+
Sbjct: 661 VIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSPLHANVDLNAIS 720
Query: 626 QSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSS--DVTPF--------TIKLT--HF 673
+ C N SG + ++ D + F I +T F
Sbjct: 721 RDSRCGNFSGADLSSLVKEAGVWALKKRFFQNQKIQELDSSGFYEDSIGEDDISITAEDF 780
Query: 674 EQALSKISPSVSELQIQRYKTLSE 697
+ ALS I PSVS+ RY+ L++
Sbjct: 781 DHALSSIRPSVSDRDRMRYEKLNK 804
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SS94 | CD48C_ARATH | No assigned EC number | 0.6304 | 0.9216 | 0.7890 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00035083001 | SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (659 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 702 | |||
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 1e-177 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-135 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 9e-73 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 1e-69 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 8e-65 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 1e-63 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 4e-62 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 2e-61 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 2e-61 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 9e-61 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 8e-59 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 1e-58 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 1e-56 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 4e-56 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 3e-55 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 2e-53 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-52 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 9e-51 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-48 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 2e-47 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 2e-45 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 2e-44 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 2e-44 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 3e-44 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 7e-43 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 6e-40 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 2e-32 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 1e-29 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 5e-27 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 5e-24 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 5e-24 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-16 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-15 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 2e-14 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-14 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 5e-11 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 5e-09 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 6e-09 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-07 | |
| TIGR00382 | 413 | TIGR00382, clpX, endopeptidase Clp ATP-binding reg | 2e-07 | |
| COG1219 | 408 | COG1219, ClpX, ATP-dependent protease Clp, ATPase | 2e-07 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 2e-07 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 3e-07 | |
| PRK05342 | 412 | PRK05342, clpX, ATP-dependent protease ATP-binding | 4e-07 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 1e-06 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 2e-06 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 3e-06 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 3e-06 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 3e-06 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 4e-06 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 6e-06 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 1e-05 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 1e-05 | |
| PRK13341 | 725 | PRK13341, PRK13341, recombination factor protein R | 1e-05 | |
| CHL00206 | 2281 | CHL00206, ycf2, Ycf2; Provisional | 1e-05 | |
| COG1484 | 254 | COG1484, DnaC, DNA replication protein [DNA replic | 3e-05 | |
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 3e-05 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 5e-05 | |
| pfam01057 | 271 | pfam01057, Parvo_NS1, Parvovirus non-structural pr | 8e-05 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-04 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 1e-04 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 3e-04 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 3e-04 | |
| COG0466 | 782 | COG0466, Lon, ATP-dependent Lon protease, bacteria | 4e-04 | |
| TIGR00390 | 441 | TIGR00390, hslU, ATP-dependent protease HslVU, ATP | 5e-04 | |
| COG0542 | 786 | COG0542, clpA, ATP-binding subunits of Clp proteas | 5e-04 | |
| COG0593 | 408 | COG0593, DnaA, ATPase involved in DNA replication | 7e-04 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 8e-04 | |
| PRK08116 | 268 | PRK08116, PRK08116, hypothetical protein; Validate | 0.001 | |
| TIGR00763 | 775 | TIGR00763, lon, ATP-dependent protease La | 0.001 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 0.001 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 0.002 | |
| COG1220 | 444 | COG1220, HslU, ATP-dependent protease HslVU (ClpYQ | 0.002 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 0.002 | |
| pfam00910 | 105 | pfam00910, RNA_helicase, RNA helicase | 0.002 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 | |
| PRK08116 | 268 | PRK08116, PRK08116, hypothetical protein; Validate | 0.004 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 523 bits (1348), Expect = e-177
Identities = 265/588 (45%), Positives = 370/588 (62%), Gaps = 40/588 (6%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
++D+GG++ E+++ V +P+ HP+L + LG+ P G+LLYGPPG GKT LA A+ANE
Sbjct: 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F I+ E++S G SEE +R++F +A APSI+FIDEIDAIA KRE + E+E+
Sbjct: 237 GAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK 296
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
R+V QL+T MD G V+VIGATNRPDA+DPALRRPGRFDR
Sbjct: 297 RVVAQLLTLMD-----------------GLKGRGRVIVIGATNRPDALDPALRRPGRFDR 339
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKR 362
EIV+ VPD+ AR +IL V TRN+ + DL K+A T GFVGADLAALA +A A++R
Sbjct: 340 EIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRR 399
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
I + K I E ++ L +TM DF EA KMV+PS+ RE
Sbjct: 400 FIREGKINFEAEEIPA-------------EVLKELKVTMKDFMEALKMVEPSAIREVLVE 446
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV+W D+GGL+ ++ E + +K PE +E+ G+ G LL+GPPG GKTL+AKA
Sbjct: 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKA 506
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KE 541
VA E+GANFI ++GPE+L+K+VGESE A+R +F +AR +P I+FFDE+DA+ RG +
Sbjct: 507 VATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566
Query: 542 GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
V +R++NQLL E+DG + V VI ATNRPD++D A+LRPGRF +L+ VP P +
Sbjct: 567 DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626
Query: 602 RGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL------- 654
R I + R P+ + VDL +A + E +GAD+ A+ EAAMAAL + +
Sbjct: 627 RKEIFKIHTRSMPLAEDVDLEELA--EMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684
Query: 655 ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
+ + +++ HF +AL K+ PSVS+ + RY+ L++ K
Sbjct: 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRL 732
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 405 bits (1043), Expect = e-135
Identities = 237/545 (43%), Positives = 314/545 (57%), Gaps = 61/545 (11%)
Query: 143 PLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS 202
PL P+L + LG+ P G+LL+GPPG GKT LA A+ANE G F I+ E++S G S
Sbjct: 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGES 61
Query: 203 EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262
E +R+LF +A + APSI+FIDEIDA+A KR + Q E+ERR+V QL+ MD R
Sbjct: 62 ELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKR----- 116
Query: 263 DQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322
G V+VIGATNRPD +DPA RRPGRFDREI + +PDE R++IL + T
Sbjct: 117 -------------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHT 163
Query: 323 RNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSD 382
R + + +A T G GADL ALA +A ++R ID +
Sbjct: 164 RLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYI----------- 212
Query: 383 DWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFD 442
+T DFEEA K V PS R +V +D+GGL+ + E
Sbjct: 213 ---------------GVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELK 255
Query: 443 RYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502
I +K PE + + G+ G LLYGPPG GKTL+AKAVA E+ + FI +KG ELL+K
Sbjct: 256 EAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315
Query: 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK 562
+VGESE +R LF +AR +P I+F DE+D+L + RG R++ QLL ELDG +K
Sbjct: 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375
Query: 563 RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDSVD 620
+GV VI ATNRPD +D A+LRPGRF +L+YVPLP +ER I + R K P+ + VD
Sbjct: 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVD 435
Query: 621 LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680
L +A + E SGAD+AA++ EAA+ AL + T+ F AL KI
Sbjct: 436 LEELA--EITEGYSGADIAALVREAALEALREARR--------REVTLD--DFLDALKKI 483
Query: 681 SPSVS 685
PSV+
Sbjct: 484 KPSVT 488
|
Length = 494 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 9e-73
Identities = 110/232 (47%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P+V +ED+GGLD E + +K PE +EE G+D G LLYGPPG GKTL+AKAV
Sbjct: 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAV 205
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
AN+ A FI + G EL+ KY+GE VR LF AR +P I+F DE+DA+ KR G
Sbjct: 206 ANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGT 265
Query: 544 WV---VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
V+R + +LL +LDG D R V VI ATNRPD++D A+LRPGRF + + PLP +
Sbjct: 266 SGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652
R IL+ RK + D VDL +A+ E SGADL A+ EA M A+ +
Sbjct: 326 GRAEILKIHTRKMNLADDVDLELLARL--TEGFSGADLKAICTEAGMFAIRE 375
|
Length = 406 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 1e-69
Identities = 114/260 (43%), Positives = 153/260 (58%), Gaps = 16/260 (6%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV +ED+GGL+ E + +K PE +EE G++ G LLYGPPG GKTL+AKAV
Sbjct: 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 185
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GK 540
A+E A FI + G EL+ K++GE VR LF AR +P I+F DE+DA+ KR G
Sbjct: 186 AHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGT 245
Query: 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G V+R L QLL E+DG D R V +I ATNR D++D A+LRPGRF +++ VPLP +
Sbjct: 246 SGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEE 305
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660
R IL+ RK + D VDL +A + E SGADL A+ EA M A+ D
Sbjct: 306 GRLEILKIHTRKMNLADDVDLEELA--ELTEGASGADLKAICTEAGMFAIRDD------- 356
Query: 661 SDVTPFTIKLTHFEQALSKI 680
+ + F +A+ K+
Sbjct: 357 ----RTEVTMEDFLKAIEKV 372
|
Length = 389 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 8e-65
Identities = 128/373 (34%), Positives = 183/373 (49%), Gaps = 56/373 (15%)
Query: 52 DLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLG 111
L + S ++ +++ + + R IDLV E EE++K +
Sbjct: 176 TLAARTVGKSGADLGALAKEAALRELR-----RAIDLVGEYIGVTEDDFEEALKKVLPSR 230
Query: 112 AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGK 171
L E D+GG+E EELK + PL P+L + LG+RP G+LLYGPPG GK
Sbjct: 231 -GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGK 289
Query: 172 TKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231
T LA A+A E+ F + +E++S G SE+NIR+LF KA + APSI+FIDEID++AS
Sbjct: 290 TLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS 349
Query: 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVD 291
R + RR+V QL+T +D + VLVI ATNRPD +D
Sbjct: 350 GRGPSEDGSGRRVVGQLLTELD---------GIEKAEG--------VLVIAATNRPDDLD 392
Query: 292 PALRRPGRFDREIVLGVPDENARVQILSVLTR--NLRVEGSFDLVKIARSTPGFVGADLA 349
PAL RPGRFDR I + +PD R++I + R + DL ++A T G+ GAD+A
Sbjct: 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA 452
Query: 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATK 409
AL +A A++ E R +T+ DF +A K
Sbjct: 453 ALVREAALEALR-------------------------------EARRREVTLDDFLDALK 481
Query: 410 MVQPSSRREGFSA 422
++PS E +
Sbjct: 482 KIKPSVTYEEWKE 494
|
Length = 494 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 1e-63
Identities = 112/232 (48%), Positives = 145/232 (62%), Gaps = 5/232 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV +ED+GGL+ E + +K PE +EE G++ G LLYGPPG GKTL+AKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-- 541
A+E A FI + G EL+ KY+GE VR +F A+ +P I+F DE+DA+ KR
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236
Query: 542 -GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G V+R L QLL ELDG D R V VI ATNRPD++D A+LRPGRF +++ VPLP +
Sbjct: 237 SGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652
R IL+ RK + + VDL IA K E SGADL A+ EA M A+ +
Sbjct: 297 GRLEILKIHTRKMKLAEDVDLEAIA--KMTEGASGADLKAICTEAGMFAIRE 346
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 4e-62
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 74/337 (21%)
Query: 80 EVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKME 139
EV+P + D ++ EV + ++D+GG+E + E++
Sbjct: 107 EVLPSEKD-PRVQAMEVIESPNVT-------------------YEDIGGLEEQIREVREA 146
Query: 140 VIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199
V +PL P+L + +G+ P G+LLYGPPG GKT LA A+A+ET F ++ +E+V
Sbjct: 147 VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206
Query: 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL----QREMERRIVTQLMTCMDES 255
G +R+LF A APSI+FIDEIDAIA+KR + RE++R ++ QL+ MD
Sbjct: 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLM-QLLAEMD-- 263
Query: 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARV 315
D + G V +I ATNR D +DPA+ RPGRFDR I + +PDE R+
Sbjct: 264 --------------GFDPR-GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRL 308
Query: 316 QILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNS 375
+IL + TR + + DL ++A T G GADL A+ +AG A++
Sbjct: 309 EILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------------- 355
Query: 376 IAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412
+R +TM DF +A + V
Sbjct: 356 -------------------DRTEVTMEDFLKAIEKVM 373
|
Length = 389 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 2e-61
Identities = 114/332 (34%), Positives = 165/332 (49%), Gaps = 72/332 (21%)
Query: 79 FEVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKM 138
V+P ++D EVE K + + ++D+GG++ ++E++
Sbjct: 126 VRVLPPEVD-PRVSVMEVEEKPDVT-------------------YEDIGGLDEQIQEIRE 165
Query: 139 EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198
V +PL +P+L + LG+ P G+LLYGPPG GKT LA A+AN+T F ++ +E+V
Sbjct: 166 VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225
Query: 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER---RIVTQLMTCMDES 255
G +R+LF A APSI+FIDEIDAI +KR + +R R + +L+ +D
Sbjct: 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD-- 283
Query: 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARV 315
D + G V VI ATNRPD +DPAL RPGRFDR+I +PDE R
Sbjct: 284 --------------GFDPR-GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRA 328
Query: 316 QILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNS 375
+IL + TR + + DL +AR T GF GADL A+ +AG A++
Sbjct: 329 EILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE------------- 375
Query: 376 IAEQHSDDWWRQPWLPEEMERLTITMTDFEEA 407
R +TM DF +A
Sbjct: 376 -------------------RRDEVTMEDFLKA 388
|
Length = 406 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 2e-61
Identities = 108/261 (41%), Positives = 150/261 (57%), Gaps = 19/261 (7%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P V ++DV G+D + E IV +K P ++ + G + G LL GPPG GKTL+AKAV
Sbjct: 50 PKVTFKDVAGIDEAKEEL-MEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAV 108
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK--- 540
A EAG F I G + + +VG VR LF +A+ +PCI+F DE+DA+ +RG
Sbjct: 109 AGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG 168
Query: 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G E+ LNQLL+E+DG GV VI ATNRPDV+D A+LRPGRF + + V LP
Sbjct: 169 GGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIK 228
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAM-AALEDKLISSKS 659
R IL+ A+ K + VDL +A + SGADLA ++NEAA+ AA ++K
Sbjct: 229 GREEILKVHAKNKKLAPDVDLKAVA--RRTPGFSGADLANLLNEAALLAARKNKT----- 281
Query: 660 SSDVTPFTIKLTHFEQALSKI 680
I + E+A+ ++
Sbjct: 282 -------EITMNDIEEAIDRV 295
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 9e-61
Identities = 115/272 (42%), Positives = 157/272 (57%), Gaps = 37/272 (13%)
Query: 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLA 175
+ K F+D+ G++ EEL ME++ L +P LG + G+LL GPPG GKT LA
Sbjct: 47 EEKPKVTFKDVAGIDEAKEEL-MEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105
Query: 176 HAIANETGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232
A+A E GVPF+ IS ++ V GV GAS +RDLF +A + AP I+FIDEIDA+ +
Sbjct: 106 KAVAGEAGVPFFSISGSDFVEMFVGV-GASR--VRDLFEQAKKNAPCIIFIDEIDAVGRQ 162
Query: 233 R------ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR 286
R N +RE + + QL+ MD + G V+VI ATNR
Sbjct: 163 RGAGLGGGNDERE---QTLNQLLVEMD----------------GFGTNTG-VIVIAATNR 202
Query: 287 PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGA 346
PD +DPAL RPGRFDR++V+ +PD R +IL V +N ++ DL +AR TPGF GA
Sbjct: 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGA 262
Query: 347 DLAALANKAGNLAMKRIIDQRKSELSGNSIAE 378
DLA L N+A LA ++ K+E++ N I E
Sbjct: 263 DLANLLNEAALLAARK----NKTEITMNDIEE 290
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 8e-59
Identities = 110/252 (43%), Positives = 151/252 (59%), Gaps = 3/252 (1%)
Query: 399 ITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEF 458
+ +T+ E +P +P V +ED+GGL + + + +K PE +E
Sbjct: 149 VYVTEATEVEIREKPVREEIE-RKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL 207
Query: 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518
G++ G LLYGPPG GKTL+AKAVANEAGA FI I GPE+++KY GESE +R +F A
Sbjct: 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEA 267
Query: 519 RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578
+P I+F DE+DA+ KR + G V +R++ QLL +DG R V VIGATNRPD +
Sbjct: 268 EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327
Query: 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADL 638
D A+ RPGRF + + + +P R IL+ R P+ + VDL +A+ GADL
Sbjct: 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAE--VTHGFVGADL 385
Query: 639 AAMMNEAAMAAL 650
AA+ EAAMAAL
Sbjct: 386 AALAKEAAMAAL 397
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 1e-58
Identities = 102/249 (40%), Positives = 148/249 (59%), Gaps = 14/249 (5%)
Query: 114 ELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTK 173
E++ + ++D+GG+E + E++ V +PL HP+L + +G+ P G+LLYGPPG GKT
Sbjct: 112 EVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTL 171
Query: 174 LAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR 233
LA A+A+ET F ++ +E+V G +R++F A APSI+FIDEIDAIA+KR
Sbjct: 172 LAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR 231
Query: 234 ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293
+ +R + LM + E D D + G V VI ATNRPD +DPA
Sbjct: 232 TDSGTSGDREVQRTLMQLLAE-------------LDGFDPR-GNVKVIAATNRPDILDPA 277
Query: 294 LRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353
L RPGRFDR I + +PD R++IL + TR +++ DL IA+ T G GADL A+
Sbjct: 278 LLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337
Query: 354 KAGNLAMKR 362
+AG A++
Sbjct: 338 EAGMFAIRE 346
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-56
Identities = 101/225 (44%), Positives = 135/225 (60%), Gaps = 6/225 (2%)
Query: 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485
+ + D+ G++ + EF+ +V +K PE + G + G LL GPPG GKTL+AKA+A
Sbjct: 180 ITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238
Query: 486 EAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGW 544
EA F I G E + +VG VR LF +A+ SPCI+F DE+DA+ +RG GG
Sbjct: 239 EAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGG 298
Query: 545 VVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602
ER LNQLL E+DG KGV VI ATNR D++D A+LRPGRF + + V LP + R
Sbjct: 299 NDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358
Query: 603 GLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647
IL+ AR K + V L IA+ SGADLA ++NEAA+
Sbjct: 359 LDILKVHARNKKLSPDVSLELIARRT--PGFSGADLANLLNEAAI 401
|
Length = 638 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 4e-56
Identities = 113/293 (38%), Positives = 153/293 (52%), Gaps = 35/293 (11%)
Query: 94 REVEMKKEESVKGGMGLGAEE----LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQL 149
+ K + M G + ++ G F+D+ G+E EE + EV+ L P+
Sbjct: 149 QRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFE-EVVSFLKKPER 207
Query: 150 PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDL 209
+G + G+LL GPPG GKT LA AIA E VPF+ IS +E V G +RDL
Sbjct: 208 FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL 267
Query: 210 FSKAYRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHRLVQPGD 263
F KA +P IVFIDEIDA+ +R N +RE + + QL+T MD G
Sbjct: 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDERE---QTLNQLLTEMD--------GF 316
Query: 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR 323
+ +K V+VI ATNR D +D AL RPGRFDR+I + +PD R+ IL V R
Sbjct: 317 KGNKG---------VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367
Query: 324 NLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSI 376
N ++ L IAR TPGF GADLA L N+A L +R +K+ ++ I
Sbjct: 368 NKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR----KKATITMKEI 416
|
Length = 638 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 3e-55
Identities = 111/264 (42%), Positives = 152/264 (57%), Gaps = 19/264 (7%)
Query: 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIA 480
V + DV G+D + E +V +K P++Y+ G + G LL GPPG GKTL+A
Sbjct: 142 EDQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLA 200
Query: 481 KAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK 540
KAVA EAG F I G + + +VG VR LF +A+ +PCI+F DE+DA+ +RG
Sbjct: 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260
Query: 541 -EGGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597
GG ER LNQLL+E+DG +GV VI ATNRPDV+D A+LRPGRF + + V LP
Sbjct: 261 GLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELP 320
Query: 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAALEDKLIS 656
R IL+ A+ KP+ + VDL IA+ SGADLA ++NEAA +AA +K
Sbjct: 321 DIKGREQILKVHAKNKPLAEDVDLKKIARG--TPGFSGADLANLLNEAALLAARRNK--- 375
Query: 657 SKSSSDVTPFTIKLTHFEQALSKI 680
I + E+A+ ++
Sbjct: 376 ---------KEITMRDIEEAIDRV 390
|
Length = 596 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-53
Identities = 97/234 (41%), Positives = 137/234 (58%), Gaps = 13/234 (5%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P+V + D+GGLD + E + + PE YE+ G+D G LLYGPPG GKT++AKAV
Sbjct: 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR----- 538
A+ A FI + G E + KY+GE VR +F AR +P I+F DEVD++ TKR
Sbjct: 200 AHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259
Query: 539 --GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596
+E V+R+L +LL ++DG D+ V VI ATNR D +D A+LRPGR + + PL
Sbjct: 260 GADRE----VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315
Query: 597 PTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL 650
P ++ LI + + K + + VDL E +S AD+AA+ EA M A+
Sbjct: 316 PDRRQKRLIFQTITSKMNLSEEVDLEDFVSRP--EKISAADIAAICQEAGMQAV 367
|
Length = 398 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 5e-52
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LLYGPPG GKT +AKAVA E GA FI I G EL++KYVGESE +R LF A+ +PC++
Sbjct: 2 LLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVI 61
Query: 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKG-VFVIGATNRPDVMDRAVLRP 585
F DE+DAL RG G R++NQLL ELDG V VI ATNRPD +D A+LR
Sbjct: 62 FIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLR- 120
Query: 586 GRFGKLLYVPL 596
GRF +++ PL
Sbjct: 121 GRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 9e-51
Identities = 115/278 (41%), Positives = 154/278 (55%), Gaps = 42/278 (15%)
Query: 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKL 174
L+ + F D+ G++ EEL E++ L +P+ Q LG + G+LL GPPG GKT L
Sbjct: 141 LEDQVKVTFADVAGVDEAKEEL-SELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLL 199
Query: 175 AHAIANETGVPFYKISATEVV---SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231
A A+A E GVPF+ IS ++ V GV GAS +RDLF +A + AP I+FIDEIDA+
Sbjct: 200 AKAVAGEAGVPFFSISGSDFVEMFVGV-GASR--VRDLFEQAKKNAPCIIFIDEIDAVGR 256
Query: 232 KRE------NLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATN 285
+R N +RE + + QL+ M D G V+VI ATN
Sbjct: 257 QRGAGLGGGNDERE---QTLNQLLVEM----------------DGFGGNEG-VIVIAATN 296
Query: 286 RPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345
RPD +DPAL RPGRFDR+I++ +PD R QIL V +N + DL KIAR TPGF G
Sbjct: 297 RPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSG 356
Query: 346 ADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDD 383
ADLA L N+A LA +R + I + ++
Sbjct: 357 ADLANLLNEAALLAARR---------NKKEITMRDIEE 385
|
Length = 596 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 5e-48
Identities = 69/148 (46%), Positives = 88/148 (59%), Gaps = 17/148 (11%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LLYGPPG GKT LA A+A E G PF +IS +E+VS G SE+ +R+LF A + AP +
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 221 VFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280
+FIDEIDA+A R + RR+V QL+T +D S V+V
Sbjct: 61 IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDG----------------FTSSLSKVIV 104
Query: 281 IGATNRPDAVDPALRRPGRFDREIVLGV 308
I ATNRPD +DPAL R GRFDR I +
Sbjct: 105 IAATNRPDKLDPALLR-GRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-47
Identities = 90/244 (36%), Positives = 134/244 (54%), Gaps = 22/244 (9%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG++ +E++ V +PL P+L + +G+ P G+LLYGPPG GKT LA A+A+ T
Sbjct: 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ----R 238
F ++ +E V G +RD+F A APSI+FIDE+D+IA+KR + Q R
Sbjct: 204 TATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADR 263
Query: 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
E++ RI+ +L+ MD DQ + V VI ATNR D +DPAL RPG
Sbjct: 264 EVQ-RILLELLNQMDGF-------DQTTN----------VKVIMATNRADTLDPALLRPG 305
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
R DR+I +PD + I +T + + DL AD+AA+ +AG
Sbjct: 306 RLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQ 365
Query: 359 AMKR 362
A+++
Sbjct: 366 AVRK 369
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-45
Identities = 93/233 (39%), Positives = 133/233 (57%), Gaps = 5/233 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P + D+GGL+ E + + PE Y++ G+ G +LYGPPG GKTL+AKAV
Sbjct: 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR--GKE 541
ANE A F+ + G EL+ KY+G+ VR LF A +P I+F DE+DA+ TKR
Sbjct: 238 ANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATS 297
Query: 542 GGWV-VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
GG ++R + +LL +LDG D R V VI ATNR + +D A++RPGR + + P P
Sbjct: 298 GGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK 357
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653
+ I E K + + VDL +K + LSGAD+ A+ EA + AL ++
Sbjct: 358 TKRRIFEIHTSKMTLAEDVDLEEFIMAK--DELSGADIKAICTEAGLLALRER 408
|
Length = 438 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-44
Identities = 92/239 (38%), Positives = 139/239 (58%), Gaps = 14/239 (5%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+E ++E+K V +PL HP+L +G++P G++LYGPPG GKT LA A+ANET
Sbjct: 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
F ++ +E++ G + +R+LF A APSIVFIDEIDAI +KR + E+
Sbjct: 242 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEK 301
Query: 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302
I ++ +++ D DS+ G V VI ATNR +++DPAL RPGR DR
Sbjct: 302 EIQRTMLELLNQ-------------LDGFDSR-GDVKVIMATNRIESLDPALIRPGRIDR 347
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361
+I PDE + +I + T + + DL + + GAD+ A+ +AG LA++
Sbjct: 348 KIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406
|
Length = 438 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-44
Identities = 100/254 (39%), Positives = 146/254 (57%), Gaps = 17/254 (6%)
Query: 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA 489
DV G D + E +V ++ P +++ G + G L+ GPPG GKTL+AKA+A EA
Sbjct: 153 DVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 211
Query: 490 NFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER 548
F I G + + +VG VR +F +A+ +PCI+F DE+DA+ +RG GG ER
Sbjct: 212 PFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDER 271
Query: 549 --LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606
LNQ+L+E+DG + +G+ VI ATNRPDV+D A+LRPGRF + + V LP R IL
Sbjct: 272 EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 331
Query: 607 EALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPF 666
+ R+ P+ +D IA+ SGADLA ++NEAA L +++ + V
Sbjct: 332 KVHMRRVPLAPDIDAAIIARGT--PGFSGADLANLVNEAA-------LFAARGNKRV--- 379
Query: 667 TIKLTHFEQALSKI 680
+ + FE+A KI
Sbjct: 380 -VSMVEFEKAKDKI 392
|
Length = 644 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 3e-44
Identities = 115/300 (38%), Positives = 160/300 (53%), Gaps = 44/300 (14%)
Query: 104 VKGGMGLGAEELKGKEGPR----------FQDLGGMESVLEELKMEVIVPLYHPQLPQWL 153
++GG G GA GK R F D+ G + EE+ E++ L P Q L
Sbjct: 123 MQGGGGKGAMSF-GKSKARMLTEDQIKTTFADVAGCDEAKEEVA-ELVEYLREPSRFQKL 180
Query: 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA 213
G + G+L+ GPPG GKT LA AIA E VPF+ IS ++ V G +RD+F +A
Sbjct: 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240
Query: 214 YRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267
+ AP I+FIDEIDA+ +R + +RE + + Q++ MD G + ++
Sbjct: 241 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE---QTLNQMLVEMD--------GFEGNE 289
Query: 268 SDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV 327
++VI ATNRPD +DPAL RPGRFDR++V+G+PD R QIL V R + +
Sbjct: 290 G---------IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL 340
Query: 328 EGSFDLVKIARSTPGFVGADLAALANKAGNLAM---KRIIDQRKSELSGNSI---AEQHS 381
D IAR TPGF GADLA L N+A A KR++ + E + + I AE+ S
Sbjct: 341 APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRS 400
|
Length = 644 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 7e-43
Identities = 89/182 (48%), Positives = 113/182 (62%), Gaps = 19/182 (10%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKF--PEEYEEFGVDLETGFLLYGPPGCGKTLIA 480
+P+V + D+GGL + E R V + F PE Y E+G+ G LLYGPPGCGKTLIA
Sbjct: 176 VPDVTYADIGGLGS-QIEQIRDAVE-LPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIA 233
Query: 481 KAVANEAGAN----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCIL 526
KAVAN A F++IKGPELLNKYVGE+E +R +F RAR P I+
Sbjct: 234 KAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIV 293
Query: 527 FFDEVDALTTKRGKEGGWVVER-LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRP 585
FFDE+D+L RG VE ++ QLL E+DG + V VIGA+NR D++D A+LRP
Sbjct: 294 FFDEMDSLFRTRGSGVSSDVETTVVPQLLAEIDGVESLDNVIVIGASNREDMIDPAILRP 353
Query: 586 GR 587
GR
Sbjct: 354 GR 355
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-40
Identities = 99/307 (32%), Positives = 148/307 (48%), Gaps = 34/307 (11%)
Query: 391 PEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRI- 449
P +T T T V + R E I ++ +DV G E + R I
Sbjct: 90 PSGGGIITST-------TIFVLETPREEDREIISDITLDDVIG-----QEEAKRKCRLIM 137
Query: 450 KFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL 509
++ E E FG L YGPPG GKT++AKA+ANEA + +K EL+ ++VG+
Sbjct: 138 EYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGAR 197
Query: 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEG--GWVVERLLNQLLIELDGADKRKGVF 567
+ L+ RAR +PCI+F DE+DA+ R + G V E ++N LL ELDG + +GV
Sbjct: 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSE-IVNALLTELDGIKENEGVV 256
Query: 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQS 627
I ATNRP+++D A+ RF + + LP +ER ILE A+K P+ DL +A
Sbjct: 257 TIAATNRPELLDPAI--RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA-- 312
Query: 628 KFCENLSGADLAAMMNEAAM--AALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVS 685
+ +SG D+ + + A+ A ED+ ++ E+AL K +
Sbjct: 313 AKTKGMSGRDIKEKVLKTALHRAIAEDRE------------KVEREDIEKALKKERKRRA 360
Query: 686 ELQIQRY 692
Y
Sbjct: 361 PRPKHLY 367
|
Length = 368 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 87/261 (33%), Positives = 130/261 (49%), Gaps = 41/261 (15%)
Query: 113 EELKGKEGP--RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCG 170
E+L +E P + D+GG+ S +E+++ V +P HP+L + G++P G+LLYGPPGCG
Sbjct: 169 EDLVLEEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCG 228
Query: 171 KTKLAHAIAN--------ETGVP--FYKISATEVVSGVSGASEENIRDLFSKAYRTA--- 217
KT +A A+AN E G F I E+++ G +E IR +F +A A
Sbjct: 229 KTLIAKAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEG 288
Query: 218 -PSIVFIDEIDAIASKR-ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275
P IVF DE+D++ R + ++E +V QL+ +D L
Sbjct: 289 RPVIVFFDEMDSLFRTRGSGVSSDVETTVVPQLLAEIDGVESL----------------- 331
Query: 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS-VLTRNLRVEGSFDLV 334
V+VIGA+NR D +DPA+ RPGR D +I + PD A I + LT +L +
Sbjct: 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAKYLTDDLPLPEDL--- 388
Query: 335 KIARSTPGFVGADLAALANKA 355
+ G A AAL +
Sbjct: 389 ---AAHDGDREATAAALIQRV 406
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 69/189 (36%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+L YGPPG GKT +A A+ANE VP + ATE++ G I +L+ +A + AP I
Sbjct: 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCI 213
Query: 221 VFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279
VFIDE+DAIA R + R IV L+T + D G V+
Sbjct: 214 VFIDELDAIALDRRYQELRGDVSEIVNALLTEL----------------DGIKENEG-VV 256
Query: 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339
I ATNRP+ +DPA+R RF+ EI +P++ R++IL + + DL +A
Sbjct: 257 TIAATNRPELLDPAIR--SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAK 314
Query: 340 TPGFVGADL 348
T G G D+
Sbjct: 315 TKGMSGRDI 323
|
Length = 368 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-27
Identities = 51/138 (36%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESEL---AVRTLFSRA 518
LLYGPPG GKT +A+A+ANE GA F+++ +LL V VR LF A
Sbjct: 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA 80
Query: 519 RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578
P +LF DE+D+L LL L D R+ V VIGATNRP +
Sbjct: 81 EKAKPGVLFIDEIDSL-------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLG 133
Query: 579 DRAVLRPGRFGKLLYVPL 596
D R + +PL
Sbjct: 134 DLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-24
Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 43/187 (22%)
Query: 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---G 183
G E +E L+ + L + P +LLYGPPG GKT LA AIANE G
Sbjct: 1 VGQEEAIEALR-------------EALELPPPKNLLLYGPPGTGKTTLARAIANELFRPG 47
Query: 184 VPFYKISATEVVSGVSGASEEN---IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
PF ++A++++ G+ A +R LF A + P ++FIDEID+ +
Sbjct: 48 APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS-----------L 96
Query: 241 ERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRF 300
R L+ ++ + L + V VIGATNRP D R
Sbjct: 97 SRGAQNALLRVLETLNDLRIDREN-------------VRVIGATNRPLLGDLDRALYDRL 143
Query: 301 DREIVLG 307
D IV+
Sbjct: 144 DIRIVIP 150
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-24
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
N K D+GGLD L+ + R F ++ +G+ G LL G G GK+L AKA+
Sbjct: 223 VNEKISDIGGLDNLKDWLKK---RSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAI 279
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVD-ALTTKRGKEG 542
AN+ + + +L VGESE +R + A SPCIL+ DE+D A + K
Sbjct: 280 ANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD 339
Query: 543 GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602
R+L + L ++K+ VFV+ N D++ +LR GRF ++ ++ LP+ +ER
Sbjct: 340 SGTTNRVLATFITWL--SEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397
Query: 603 GLILEA-LARKKPIDDSVDLHTIAQ-SKFCENLSGADLAAMMNEAAMAALEDK 653
I + L + +P S + I + SK SGA++ + EA A +K
Sbjct: 398 EKIFKIHLQKFRP--KSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK 448
|
Length = 489 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 2e-16
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIK-----------------GPELLNKYVGESEL 509
L+ GPPG GKT +A+A+A E G + K G EL
Sbjct: 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL 65
Query: 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVI 569
+R + AR P +L DE+ +L + LL + L L K + VI
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVI 120
Query: 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPT 598
TN + A+LR RF + + + L
Sbjct: 121 LTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 2e-15
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 40/167 (23%)
Query: 161 ILLYGPPGCGKTKLAHAIANE---TGVPFYKISATE--------------VVSGVSGASE 203
IL+ GPPG GKT LA A+A E G I + SG+ E
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGE 64
Query: 204 ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263
+R + A + P ++ +DEI ++ + + + L+ +++
Sbjct: 65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKN-------- 116
Query: 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPD 310
+ VI TN + PAL R RFDR IVL +
Sbjct: 117 --------------LTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMA--------------GILLYGPPG 168
D+GG L+ LK WL R + G+LL G G
Sbjct: 227 ISDIGG----LDNLK-------------DWLKKRSTSFSKQASNYGLPTPRGLLLVGIQG 269
Query: 169 CGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEID- 227
GK+ A AIAN+ +P ++ ++ G+ G SE +R + A +P I++IDEID
Sbjct: 270 TGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDK 329
Query: 228 AIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP 287
A ++ R++ +T + E K V V+ N
Sbjct: 330 AFSNSESKGDSGTTNRVLATFITWLSE-------------------KKSPVFVVATANNI 370
Query: 288 DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG--SFDLVKIARSTPGFVG 345
D + + R GRFD L +P R +I + + R + +D+ K+++ + F G
Sbjct: 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430
Query: 346 ADL 348
A++
Sbjct: 431 AEI 433
|
Length = 489 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 3e-14
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 11/70 (15%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPS- 219
++L+GPPG GKT LA IA T PF +SA V SGV +++R++ +A + +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSA--VTSGV-----KDLREVIEEARQRRSAG 91
Query: 220 ---IVFIDEI 226
I+FIDEI
Sbjct: 92 RRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 5e-11
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 163 LYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPS--- 219
L+GPPG GKT LA IA T F +SA V SGV +++R++ +A +
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSA--VTSGV-----KDLREIIEEARKNRLLGRR 105
Query: 220 -IVFIDEI 226
I+F+DEI
Sbjct: 106 TILFLDEI 113
|
Length = 436 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 10/83 (12%)
Query: 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT-----EVVSGVSGASEENI 206
WL +P +LLYGPPG GKT LAHA+AN+ G +++A+ +V+ V+G + +
Sbjct: 33 WLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATS- 91
Query: 207 RDLFSKAYRTAPSIVFIDEIDAI 229
LF + ++ +DE+D I
Sbjct: 92 GSLFGARRK----LILLDEVDGI 110
|
Length = 482 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 41/198 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISAT-----EVVSGVSGASEENIRDLFSKAYR 215
+LL GPPG GKT LA A+A G+PF +I T + G A + + +
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY-AYAALLLEPGEFRFV 104
Query: 216 TAP------SIVFIDEIDAIASKREN-LQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268
P I+ +DEI+ + +N L +E R VT + RL P
Sbjct: 105 PGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGL---TTIRLPPP------- 154
Query: 269 DASDSKPGYVLVIGATNRPDAVD-----PALRRPGRFDREIVLGVPDENARVQILSVLTR 323
+VI N + AL RF I + PD + +L R
Sbjct: 155 ---------FIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS--EEEERIILAR 201
Query: 324 NLRVEGSFDLVKIARSTP 341
V+ +
Sbjct: 202 VGGVDELDLESLVKPVLS 219
|
Length = 329 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 156 RPMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISATE-----VVSGVSGASEENIR 207
RP+ L GP G GKT+LA A+A +I +E VS + GA +
Sbjct: 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVG 60
Query: 208 -----DLFSKAYRTAPSIVFIDEIDAIAS 231
L R SIV IDEI+
Sbjct: 61 YEEGGQLTEAVRRKPYSIVLIDEIEKAHP 89
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENI--RDLFSKAYRTA 217
ILL GP G GKT LA +A VPF AT + +G G ENI + L + Y
Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 178
Query: 218 PS---IVFIDEIDAIASKREN 235
+ I++IDEID I+ K EN
Sbjct: 179 KAQKGIIYIDEIDKISRKSEN 199
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413 |
| >gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENI--RDLFSKAY--- 214
ILL GP G GKT LA +A VPF AT + +G G ENI + L + Y
Sbjct: 100 ILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 159
Query: 215 RTAPSIVFIDEIDAIASKREN 235
R I++IDEID IA K EN
Sbjct: 160 RAERGIIYIDEIDKIARKSEN 180
|
Length = 408 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT---A 217
+LLYGPPG GKT LA+ IANE GV +I+ SG + E DL A T
Sbjct: 53 VLLYGPPGLGKTTLANIIANEMGVNI-RIT--------SGPALEKPGDL--AAILTNLEP 101
Query: 218 PSIVFIDEI 226
++FIDEI
Sbjct: 102 GDVLFIDEI 110
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT---A 217
+LLYGPPG GKT LA+ IANE GV +I SG + E DL A T
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNI-RI--------TSGPALEKPGDL--AAILTNLEE 102
Query: 218 PSIVFIDEI 226
++FIDEI
Sbjct: 103 GDVLFIDEI 111
|
Length = 328 |
| >gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 37/81 (45%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENI-RDLFSKA-Y--- 214
ILL GP G GKT LA +A VPF AT + +G G ENI L A Y
Sbjct: 111 ILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 170
Query: 215 RTAPSIVFIDEIDAIASKREN 235
+ IV+IDEID IA K EN
Sbjct: 171 KAQRGIVYIDEIDKIARKSEN 191
|
Length = 412 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 467 LLYGPPGCGKTLIAKAVANE-------AGANFIHIKGPELLNKYVGESELAVRTLFSRAR 519
L GPPG GKT IA+ VA + +L+ +Y+GESE + A
Sbjct: 316 LFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSAL 375
Query: 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579
+LF DE L + ++ LL ++ + R + VIGA R D +D
Sbjct: 376 G---GVLFLDEAYTLVETGYGQKDPFGLEAIDTLLARME--NDRDRLVVIGAGYRKD-LD 429
Query: 580 RAV-----LRPGRFGKLLYVPLPTPDE 601
+ + LR RF +++ P +PDE
Sbjct: 430 KFLEVNEGLR-SRFTRVIEFPSYSPDE 455
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCS--- 522
+L+GPPG GKT +A+ +A A F + G +L R + AR
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAV-----TSGVKDL--REVIEEARQRRSAG 91
Query: 523 -PCILFFDEV 531
ILF DE+
Sbjct: 92 RRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 50/213 (23%), Positives = 72/213 (33%), Gaps = 41/213 (19%)
Query: 437 LRHEFDRYIVRRIKFPEEYEEFGVDLETG--FLLYGPPGCGKTLIAKAVANEAGANFIHI 494
+R E ++ +V E E + L G LL GPPG GKTL+A+A+A G F+ I
Sbjct: 18 IRSELEKVVVGD---EEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRI 74
Query: 495 KGPELLNKY--VGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGGW 544
+ L +G A L IL DE++ +
Sbjct: 75 QCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------- 127
Query: 545 VVERLLNQLLIE-------LDGADKRKGVFVIGATNRPDVMDRAVLRP------GRFGKL 591
V+ L + L E L VI N + P RF L
Sbjct: 128 -VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG---EYEGTYPLPEALLDRF--L 181
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTI 624
L + + PD LAR +D+ +
Sbjct: 182 LRIYVDYPDSEEEERIILARVGGVDELDLESLV 214
|
Length = 329 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA--- 217
+LL+GPPG GKT LAH IANE GV + T SG + E DL A T
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGV---NLKIT------SGPALEKPGDLA--AILTNLEE 103
Query: 218 PSIVFIDEIDAIA 230
++FIDEI ++
Sbjct: 104 GDVLFIDEIHRLS 116
|
Length = 332 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAP-S 219
+LLYGPPG GKT LAH IANE GV + T SG + E DL +
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGV---NLKIT------SGPALEKPGDLAAILTNLEEGD 83
Query: 220 IVFIDEIDAIA 230
++FIDEI ++
Sbjct: 84 VLFIDEIHRLS 94
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 160 GILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASE---ENIR 207
GIL+ GPPG GKT LA IA E G VPF IS +E+ S +E + +R
Sbjct: 67 GILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALR 119
|
Length = 450 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 36/156 (23%)
Query: 160 GILLYGPPGCGKTKL----AHAIANETGVPFYK-----ISATEVVSGVSGASEENIRDLF 210
G+LL GPPG GK++L A A++N FY + ++ +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSN--RPVFYVQLTRDTTEEDLKGRRNIDPGGASWVD- 57
Query: 211 SKAYRTA--PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268
R A I +DEI+ ++ L++ +DE L+ G + K
Sbjct: 58 GPLVRAAREGEIAVLDEINRANPD-----------VLNSLLSLLDERRLLLPEGGELVK- 105
Query: 269 DASDSKPGYVLVIGATNRPDA----VDPALRRPGRF 300
+ P +I N D + PALR RF
Sbjct: 106 ----AAPDGFRLIATMNPLDRGLNELSPALRS--RF 135
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 20/78 (25%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL----------LNKYVGESELAVRTLFS 516
LLYGPPG GKT +A A+AN+ G I EL + + GE+ +LF
Sbjct: 43 LLYGPPGVGKTSLAHALANDYGWEVI-----ELNASDQRTADVIERVAGEA-ATSGSLFG 96
Query: 517 RARTCSPCILFFDEVDAL 534
R ++ DEVD +
Sbjct: 97 ARRK----LILLDEVDGI 110
|
Length = 482 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 158 MAG--ILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASE---ENIR 207
+AG +L+ GPPG GKT LA AI+ E G PF IS +EV S +E + R
Sbjct: 48 IAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFR 104
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 18/77 (23%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY--- 214
+ ++LYGPPG GKT LA IAN T F ++A V++GV ++R +A
Sbjct: 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA--VLAGVK-----DLRAEVDRAKERL 104
Query: 215 -----RTAPSIVFIDEI 226
RT I+FIDE+
Sbjct: 105 ERHGKRT---ILFIDEV 118
|
Length = 725 |
| >gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 62/255 (24%), Positives = 97/255 (38%), Gaps = 40/255 (15%)
Query: 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF---------------YKISATEVVSG 197
L + P GIL+ G G G++ L +A + VPF + I ++
Sbjct: 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDS 1684
Query: 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC------ 251
++I T + + +D + I LQ E + + C
Sbjct: 1685 DDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFE----LAKAMSPCIIWIPN 1740
Query: 252 -----MDESHRLVQPGDQKSKS-DASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREI- 304
++ES+ L S S D +LVI +T+ P VDPAL P + + I
Sbjct: 1741 IHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1800
Query: 305 --VLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLAMK 361
L +P + LS TR +E F T G DL AL N+A +++
Sbjct: 1801 IRRLLIPQQRKHFFTLS-YTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS-- 1857
Query: 362 RIIDQRKSELSGNSI 376
I Q+KS + N+I
Sbjct: 1858 --ITQKKSIIDTNTI 1870
|
Length = 2281 |
| >gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 159 AGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATEVVSGV-----SGASEENIRDLF 210
++L GPPG GKT LA AI NE G+ I+A +++S + G EE +
Sbjct: 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL 165
Query: 211 SKAYRTAPSIVFIDEI 226
K ++ ID+I
Sbjct: 166 KKV-----DLLIIDDI 176
|
Length = 254 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRDLFSKA 213
M +L GPPG GKT A A+A E ++ + E+ AS+E IR+ +
Sbjct: 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-----NASDERGIDVIRNKIKEF 92
Query: 214 YRTAPS------IVFIDEIDAIASKREN-LQREMER 242
RTAP I+F+DE D + S + L+R ME
Sbjct: 93 ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM 128
|
Length = 319 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 468 LYGPPGCGKTLIAKAVANEAGANFIHIKG-----PELLNKYVGESELAVRTLFSRARTCS 522
L+GPPG GKT +A+ +A A F + +L E A + RT
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI----IEEARKNRLLGRRT-- 106
Query: 523 PCILFFDEV 531
ILF DE+
Sbjct: 107 --ILFLDEI 113
|
Length = 436 |
| >gnl|CDD|216270 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 148 QLPQWLGVR--PMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189
L WL + + YGP GKT LA AIA+ VP Y
Sbjct: 101 VLLAWLSKQGGKRNTVWFYGPASTGKTNLAQAIAH--AVPLYGC 142
|
This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity. Length = 271 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGA---NFIHIKGPELLNK------------YVGESELA 510
FL GP G GKT +AKA+A I I E + + YVG E
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG 65
Query: 511 VRTLFSRARTCSPCILFFDEVD 532
T R + I+ DE++
Sbjct: 66 QLTEAVRRKP--YSIVLIDEIE 85
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502
LL+GPPG GKT +A +ANE G N GP L K
Sbjct: 56 LLFGPPGLGKTTLAHIIANELGVNLKITSGP-ALEK 90
|
Length = 332 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 3e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LLYGPPG GKT +A +ANE G N GP L
Sbjct: 54 LLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 86
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LLYGPPG GKT +A +ANE G N GP L
Sbjct: 55 LLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87
|
Length = 328 |
| >gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIR 207
+ L GPPG GKT L +IA G F +IS + GV +E IR
Sbjct: 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRIS----LGGVRDEAE--IR 393
|
Length = 782 |
| >gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRTAP 218
IL+ GP G GKT++A +A PF K+ AT+ V V E +RDL A
Sbjct: 50 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLVDIA----- 104
Query: 219 SIVFIDEIDAIASKRENLQREMERRIVTQLM 249
V + + + I R+ + E RIV L+
Sbjct: 105 --VKLVKEEMIEKVRDRAEERAEERIVDSLL 133
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441 |
| >gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 57/181 (31%)
Query: 162 LLYGPPGCGKTK----LAHAIANETGVP----FYKISATEVVSGVSGAS-----EENIRD 208
+L G PG GKT LA I N VP +I + ++ S V+GA EE ++
Sbjct: 195 VLVGEPGVGKTAIVEGLAQRIVNGD-VPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKA 253
Query: 209 LFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268
+ + ++ I+FIDEI H +V G + +
Sbjct: 254 VLKEVEKSKNVILFIDEI-----------------------------HTIVGAGATEGGA 284
Query: 269 -DASD-SKP----GYVLVIGATN----RPDAV-DPALRRPGRFDREIVLGVPDENARVQI 317
DA++ KP G + IGAT R D AL R RF +++++ P + I
Sbjct: 285 MDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAI 341
Query: 318 L 318
L
Sbjct: 342 L 342
|
Length = 786 |
| >gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 161 ILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
+ +YG G GKT L AI NE +++ + + A +N + F + Y
Sbjct: 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYS 175
Query: 216 TAPSIVFIDEIDAIASKRENLQRE 239
+ ID+I +A K E Q E
Sbjct: 176 LDL--LLIDDIQFLAGK-ERTQEE 196
|
Length = 408 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LLYGPPG GKT +A +ANE G N GP L
Sbjct: 34 LLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL 66
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 450 KFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG---PELLNK---- 502
K+ +++EE + G LL+G G GKT +A +ANE + + P+LLN+
Sbjct: 102 KYVKKFEEMKKE-NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKST 160
Query: 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLN 551
Y + + IL D L +R E W E++ N
Sbjct: 161 YKSSGKEDENEIIRSLVNADLLIL-----DDLGAERDTE--WAREKVYN 202
|
Length = 268 |
| >gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 22/86 (25%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIR------------- 207
+ L GPPG GKT L +IA F + S + GV +E IR
Sbjct: 350 LCLVGPPGVGKTSLGKSIAKALNRKFVRFS----LGGVRDEAE--IRGHRRTYVGAMPGR 403
Query: 208 --DLFSKAYRTAPSIVFIDEIDAIAS 231
KA +T + +DEID I S
Sbjct: 404 IIQGLKKA-KTKNPLFLLDEIDKIGS 428
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 775 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 29/121 (23%)
Query: 467 LLYGPPGCGKTLIAKAVANEA-GANFIHIKGPE----------------LLNKYVGESEL 509
+L G G GKT + + +A + ++++ P L +EL
Sbjct: 8 VLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILRALGLPLSGGTTAEL 67
Query: 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVI 569
+ + + +L DE L+ L +L D ++K V ++
Sbjct: 68 -LEAILDALKRRGRPLLIIDEAQHLS-----------LEALEELRDLYDLSEKGIQVILV 115
Query: 570 G 570
G
Sbjct: 116 G 116
|
Length = 124 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.002
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
IL+ GPPG GK+ LA +A + G+P + G++ + + D+
Sbjct: 2 ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDI----------D 51
Query: 221 VFIDEIDAIASKRENLQREMER 242
+ ++ ++ I + + ++
Sbjct: 52 IDLELLEEILDELAKQEWVIDG 73
|
Length = 114 |
| >gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRT 216
IL+ GP G GKT++A +A G PF K+ AT+ V V E IRDL A +
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKL 110
|
Length = 444 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEE-------NIRDLF 210
M ++L GPPG GKT A+A+E P YK + E+ AS++ N +F
Sbjct: 34 MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL-----NASDDRGIDVVRNKIKMF 88
Query: 211 SKAYRTAPS----IVFIDEIDAIAS-KRENLQREME 241
++ T P IV +DE D++ S ++ L+R ME
Sbjct: 89 AQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTME 124
|
Length = 319 |
| >gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
I LYGPPGCGK+ LA +A V S N D F Y T +
Sbjct: 1 IWLYGPPGCGKSTLAKYLARALLKHLGLPKKDSVYSR-------NPDDDFWDGY-TGQPV 52
Query: 221 VFIDEIDAIASK 232
V ID+
Sbjct: 53 VIIDDFGQNPDG 64
|
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query: 150 PQWL--GVRPMAGI-LLYGPPGCGKT----KLAHAIANETGVPFYKISATE---VVSGVS 199
+WL G+ P G+ LL G PG GK+ LA A+A TG PF E V+
Sbjct: 22 LRWLVKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVA--TGRPFLGPFPVEPGRVLYLDG 79
Query: 200 GASEENIRDLFSKAYRTA-----PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDE 254
SE +R P +V ID + ++ EN + ++ L
Sbjct: 80 EDSEAGLRRRLRALGEALEEIEGPDLVVIDPLASLLGGDENDNAAV-GALLAALDRLARR 138
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 43/151 (28%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELLNKYVGESEL----------AVR 512
G LL GPPG GK+ +A+ +A A ++ L + E +L A
Sbjct: 1 GVLLVGPPGTGKSELAERLA-AALSNRPVFYV----QLTRDTTEEDLKGRRNIDPGGASW 55
Query: 513 T---LFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL------LIELDGADK- 562
L AR I DE++ V+ LL+ L L E K
Sbjct: 56 VDGPLVRAAR--EGEIAVLDEINRANPD-------VLNSLLSLLDERRLLLPEGGELVKA 106
Query: 563 -RKGVFVIGATNRPD----VMDRAVLRPGRF 588
G +I N D + A+ RF
Sbjct: 107 APDGFRLIATMNPLDRGLNELSPALRS--RF 135
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 160 GILLYGPPGCGKTKLAHAIANE 181
G+LL+G G GKT LA IANE
Sbjct: 116 GLLLWGSVGTGKTYLAACIANE 137
|
Length = 268 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 100.0 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 100.0 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 100.0 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.98 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.98 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.97 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.97 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.97 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.96 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.96 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.96 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 99.93 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.91 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.89 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.89 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.88 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.88 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.87 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.86 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.86 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.83 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.83 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.83 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.82 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.82 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.81 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.78 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.77 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.77 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.77 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.75 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.73 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.73 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.73 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.72 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.72 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.71 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.69 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.69 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.68 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.68 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.68 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.68 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.68 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.68 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.68 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.66 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.66 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.66 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.65 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.65 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.65 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.64 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.64 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.64 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.63 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.63 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.62 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.61 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.6 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.6 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.59 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.59 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.58 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.58 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.57 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.57 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.57 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.56 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.56 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.56 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.56 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.56 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.56 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.55 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.55 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.55 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.54 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.53 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.53 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.53 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.53 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.53 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.53 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 99.52 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.52 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.51 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.51 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.51 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.5 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.5 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.5 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.5 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.5 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.49 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.48 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.48 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.48 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.47 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.46 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.46 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.46 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.46 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.46 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.45 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.45 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.45 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.45 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.45 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.44 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.44 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.44 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.43 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.43 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.43 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.43 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.43 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.42 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.42 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.42 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.42 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.42 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.42 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.41 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.4 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.4 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.4 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.4 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.4 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.4 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.4 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.39 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.39 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.39 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.38 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.38 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.38 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.38 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.38 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.38 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.37 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.37 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.36 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.36 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.36 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.35 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.35 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.35 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.34 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.33 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.33 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.33 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.33 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.32 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.31 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 99.31 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.31 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.3 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.3 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.3 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.29 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.29 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.29 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.29 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.29 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.28 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.28 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.28 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.27 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.27 | |
| PHA02244 | 383 | ATPase-like protein | 99.27 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.27 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.26 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 99.26 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.25 | |
| PHA02244 | 383 | ATPase-like protein | 99.25 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.24 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.24 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.24 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.23 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.22 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.21 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.21 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.21 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.2 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.2 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.2 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.2 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.2 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.19 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.19 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.19 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.18 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.18 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.17 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.17 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.17 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.17 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.17 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.17 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.16 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.16 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.15 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.15 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.15 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.14 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.13 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.13 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.13 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.13 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.12 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.12 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 99.12 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.12 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.11 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 99.11 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.11 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.11 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.11 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 99.1 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.1 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.09 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.09 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.09 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.09 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.09 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.08 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.07 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.07 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.07 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.06 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.06 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.06 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.05 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.05 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.05 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.04 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.04 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.03 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.02 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 99.02 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.02 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.02 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.01 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.01 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 99.01 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.01 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.0 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 99.0 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.0 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.0 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.0 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.0 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 98.99 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 98.98 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.97 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.97 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.95 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.95 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.94 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.93 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.93 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.93 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.93 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.9 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.9 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.9 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.89 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.89 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.88 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.88 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.88 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.87 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.87 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.86 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.84 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 98.84 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 98.84 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.83 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.82 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.82 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.81 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.79 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.79 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.79 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.79 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.78 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.78 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.77 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.76 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.75 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.75 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.73 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.72 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.72 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.71 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.71 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.66 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.66 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.66 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.65 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.65 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.64 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.64 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.62 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.62 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.61 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.61 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.61 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.59 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.59 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.58 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.57 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.56 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.56 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.55 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.55 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.54 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.53 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.53 | |
| PRK08181 | 269 | transposase; Validated | 98.53 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.52 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 98.52 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.52 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.52 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.52 | |
| PRK08181 | 269 | transposase; Validated | 98.5 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.49 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.48 | |
| PRK06526 | 254 | transposase; Provisional | 98.47 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.46 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.46 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.46 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.46 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.46 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.45 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.45 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.44 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.44 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.44 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 98.42 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.42 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.42 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 98.41 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.41 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.4 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.39 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.39 | |
| PRK06526 | 254 | transposase; Provisional | 98.38 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.36 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.35 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.35 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.35 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.35 | |
| KOG3595 | 1395 | consensus Dyneins, heavy chain [Cytoskeleton] | 98.33 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.33 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.33 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.32 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.32 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.31 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.31 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.3 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.29 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.27 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.26 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.25 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.24 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.24 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.24 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.22 | |
| KOG1808 | 1856 | consensus AAA ATPase containing von Willebrand fac | 98.22 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.21 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.2 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.18 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.15 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 98.15 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.15 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.15 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.15 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.15 | |
| PRK06851 | 367 | hypothetical protein; Provisional | 98.13 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.13 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 98.13 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.13 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.1 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.1 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.1 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.09 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.09 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 98.09 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.05 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.04 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.0 |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-111 Score=877.26 Aligned_cols=568 Identities=54% Similarity=0.894 Sum_probs=520.3
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
..++|.+|+|++....+|.+.+.. +.+|+.|..+|+.|++|||||||||||||+||++||++++.||+.|++.++++++
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 366899999999999999988866 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
.|+++++++++|++|....|||+||||||.+.++++..+.++++|++.+|+++||++...-. ....|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~-------------~g~~V 330 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT-------------KGDPV 330 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc-------------CCCCe
Confidence 99999999999999999999999999999999999999999999999999999998764111 12339
Q ss_pred EEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 279 LVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 279 ~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+||||||+|+.|||+|+|+|||++.|.+..|+..+|.+||+.+++++.+...+++..+|..|+||+|+||.+||.+|+..
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCccccc-------cCcc-----------------------cccCCCChhhhhhhcccHhHHHHHH
Q 045279 359 AMKRIIDQRKSELSGNSIAEQ-------HSDD-----------------------WWRQPWLPEEMERLTITMTDFEEAT 408 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~-------~~~~-----------------------~~~~~~~~~~~~~~~i~~~d~~~~l 408 (702)
|++|+++............+. .... .+..+...+..+.+.|+.+||..|+
T Consensus 411 AikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 411 AIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred HHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 999999865521111000000 0000 1222344466677889999999999
Q ss_pred hccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC
Q 045279 409 KMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 409 ~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
..++|+..|+++..+|+++|++||++++++.+|..+|.+|+++++.|.++|+..|.|+|||||||||||.+||++|++.+
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 489 ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 489 ~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
.+|+.|++++|+++|||++|..+|++|.+|+.+.||||||||+|+|+++|+.++.+...+++|+||++|||.....+|+|
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
|+|||+|+.+|||++||||||+.+|+++|+.++|..||+.+.+ +.+++.+++++.||....|+||+|+||..+|++|.
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 88899999999999888888999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-----CCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 647 MAALEDKLISSKSSSD-----VTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~-----~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
+.|+++.+........ .....+++.||++|+++++||+++.+...|+.+.++++
T Consensus 731 i~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 731 ILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 9999998864432211 11235788999999999999999999999999988754
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-93 Score=759.37 Aligned_cols=512 Identities=46% Similarity=0.812 Sum_probs=489.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
..++ ++++|.......+.+.+..|++++..+...|++++.++|+|||||||||.+++++|++.++.++.+++..+..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3446 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 199 SGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
.|+++..++..|+.+.... |+++||||+|.+++++..... ..+++..+|+.+|++... .++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~-----------------~~~ 320 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKP-----------------DAK 320 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcC-----------------cCc
Confidence 9999999999999999998 999999999999998877655 789999999999997642 467
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
++||++||.++.|||+++| |||++.+.+..|+..+|.+|++.++++++...+.++..++..+.||+|+||..+|++|..
T Consensus 321 vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~ 399 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASL 399 (693)
T ss_pred EEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999998877899999999999999999999999988
Q ss_pred HHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 358 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.+.++ +.++|..+...++|+..++.....|++.|++|||++++
T Consensus 400 ~~~r~-------------------------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~l 442 (693)
T KOG0730|consen 400 QATRR-------------------------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEEL 442 (693)
T ss_pred HHhhh-------------------------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHH
Confidence 77665 35678889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHH
Q 045279 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 438 k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
|..+++.|.|+++|++.|.++|+.+|+|+|||||||||||++||++|++++++|+.+++++++++|+|++|..++.+|.+
T Consensus 443 K~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~k 522 (693)
T KOG0730|consen 443 KRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRK 522 (693)
T ss_pred HHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 518 ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
|+...||||||||||++.+.|+++.+++.++++++||++|||.....+|+||+|||+|+.||+|++||||||++||||+|
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 99999999999999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.+.|.+||+.+++++++..++|++.|| ..|+||||+||.++|++|+..|+++.+.. ..|+.+||++|+
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vdl~~La--~~T~g~SGAel~~lCq~A~~~a~~e~i~a---------~~i~~~hf~~al 671 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVDLEELA--QATEGYSGAEIVAVCQEAALLALRESIEA---------TEITWQHFEEAL 671 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCccccHHHHH--HHhccCChHHHHHHHHHHHHHHHHHhccc---------ccccHHHHHHHH
Confidence 9999999999999999999999999999 67899999999999999999999998753 379999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHH
Q 045279 678 SKISPSVSELQIQRYKTLSET 698 (702)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~ 698 (702)
+.++++++..+++.|+.|.+.
T Consensus 672 ~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 672 KAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HhhcccCCHHHHHHHHHHhhc
Confidence 999999999999999999875
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-78 Score=703.37 Aligned_cols=551 Identities=48% Similarity=0.804 Sum_probs=495.9
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+.++|+||+|++.+++.+.+.+..|+.+|+++..+|+.++.++||+||||||||++++++|+.++.+++.+++.++.+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
.|..+..+..+|+.+....|+||||||||.+.+.++....+...++...|+..|++... .+.+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~-----------------~~~v 315 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG-----------------RGRV 315 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc-----------------CCCE
Confidence 99999999999999999999999999999999887665566677888999999986532 3559
Q ss_pred EEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 279 LVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 279 ~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+||++||.++.+|+++++++||+..+.++.|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..+|+.|...
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA 395 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888777777899999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccch
Q 045279 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLR 438 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k 438 (702)
++++.+.......... ...........++.+||..++..+.|+..++.....|.+.|++++|++.+|
T Consensus 396 al~r~~~~~~~~~~~~-------------~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k 462 (733)
T TIGR01243 396 ALRRFIREGKINFEAE-------------EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVK 462 (733)
T ss_pred HHHHHhhccccccccc-------------cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHH
Confidence 9888765322111100 011112234568899999999999999888888888999999999999999
Q ss_pred hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 439 HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 439 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
+.|.+.+.+++.+++.+.++|..++.|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|
T Consensus 463 ~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A 542 (733)
T TIGR01243 463 QELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 542 (733)
T ss_pred HHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
+...||||||||+|.+++.|+... .....+++++||.+|++.....+++||+|||+|+.||++++||||||.+|+||+|
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 999999999999999999887543 4466899999999999988888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCCccccH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS-------SDVTPFTIKL 670 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~-------~~~~~~~i~~ 670 (702)
+.++|.+||+.+.++.++..+++++.+| ..|+||+|+||.++|++|++.|+++........ .......|++
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~~l~~la--~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 700 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDVDLEELA--EMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEM 700 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccH
Confidence 9999999999999999998899999999 679999999999999999999999865422100 0112357999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 671 THFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 671 ~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
+||+.|+++++|+++++++..|++|.+.|+.
T Consensus 701 ~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 701 RHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999874
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-76 Score=630.98 Aligned_cols=535 Identities=36% Similarity=0.617 Sum_probs=448.0
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHH
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENI 206 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~ 206 (702)
-+++..+..+...+ .|-..|. ..+......+||+|+||||||+++++.|.+++.+++.++|.++.+...+.++.++
T Consensus 404 ~~~~~~~~~l~~vl-~p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 404 PGLEAKVLELVAVL-SPQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred ccchHHHHHHHHHh-CcccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 44555555454333 3333322 2234455679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCCCCCCeEEEEEecC
Q 045279 207 RDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD-ESHRLVQPGDQKSKSDASDSKPGYVLVIGATN 285 (702)
Q Consensus 207 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld-~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn 285 (702)
..+|..|+...|+|||+-++|.+..+..+ ....++...+-..+. +. .....+.++||++|+
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~---------------~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNED---------------FKFSCPPVIVVATTS 541 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhccc---------------ccCCCCceEEEEecc
Confidence 99999999999999999999998855433 222344444433333 10 011234599999999
Q ss_pred CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 286 RPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 286 ~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
..+.+++.+++ -|.++|.++.|+.++|.+||+.++....+..++....++..+.||+.+++..++..+-..+..++..
T Consensus 542 s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~ 619 (953)
T KOG0736|consen 542 SIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKN 619 (953)
T ss_pred ccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHh
Confidence 99999999999 7878899999999999999999999999888889999999999999999999998885555555544
Q ss_pred hhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc-CccccccCCccccccCCcccchhhhHHH
Q 045279 366 QRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR-REGFSAIPNVKWEDVGGLDYLRHEFDRY 444 (702)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~-~~~~~~~~~~~~~~i~g~~~~k~~l~~~ 444 (702)
.. +.... .+.....|. .....++++||.+++...+.... .-+...+|++.|+||||++++|..+.+.
T Consensus 620 ~~---l~g~~-~~~~~~~~~--------~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldT 687 (953)
T KOG0736|consen 620 KG---LAGGL-QEEDEGELC--------AAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDT 687 (953)
T ss_pred hc---ccccc-hhccccccc--------cccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHH
Confidence 33 11111 111111111 12257899999999987765432 2356678999999999999999999999
Q ss_pred HHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCe
Q 045279 445 IVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC 524 (702)
Q Consensus 445 i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 524 (702)
|..|++|+++|.. |++++.|+|||||||||||.+||++|.++..+|+.|++++++++|+|++|+++|.+|++||..+||
T Consensus 688 IqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PC 766 (953)
T KOG0736|consen 688 IQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPC 766 (953)
T ss_pred hcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCe
Confidence 9999999999986 888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcchhhcccCCC--CchHHHHHHHHHHHhhhCCC--CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCC-H
Q 045279 525 ILFFDEVDALTTKRGKE--GGWVVERLLNQLLIELDGAD--KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT-P 599 (702)
Q Consensus 525 vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~-~ 599 (702)
||||||+|+++++|+.+ +++++++++.+||.+|||.. ..+.+|||+|||||+.|||+++||||||+.+|+.+++ .
T Consensus 767 VIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 767 VIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred EEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccH
Confidence 99999999999999765 56799999999999999986 5788999999999999999999999999999999886 5
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHhhhhcC-CCCCHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCccccHHH
Q 045279 600 DERGLILEALARKKPIDDSVDLHTIAQSKFC-ENLSGADLAAMMNEAAMAALEDKLISSK------SSSDVTPFTIKLTH 672 (702)
Q Consensus 600 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~~-~~~sg~dl~~~~~~a~~~a~~~~~~~~~------~~~~~~~~~i~~~d 672 (702)
+.+..|++...++++++.++++..+|. .| ..|+|+|+-.+|.+|.+.|+++...... ...+.....|+++|
T Consensus 847 esk~~vL~AlTrkFkLdedVdL~eiAk--~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eD 924 (953)
T KOG0736|consen 847 ESKLRVLEALTRKFKLDEDVDLVEIAK--KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMED 924 (953)
T ss_pred HHHHHHHHHHHHHccCCCCcCHHHHHh--hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHH
Confidence 678899999999999999999999994 45 4999999999999999999999876443 12344567899999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 673 FEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 673 ~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
|.+|.++..||++++++.+|+++++.|.
T Consensus 925 flks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 925 FLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999986
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-68 Score=561.11 Aligned_cols=515 Identities=34% Similarity=0.516 Sum_probs=430.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEechhhhcccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISATEVVSGVS 199 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~~l~~~~~ 199 (702)
.+++-...+|++..+....| +....++||.||+|||||.|++++++++. +++..++|+.+...-.
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666666666666544333 33456799999999999999999999874 5677899999877666
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcc--hhhhHHHHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR--ENLQREMERRIVTQLMTCMD-ESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~--~~~~~~~~~~~~~~ll~~ld-~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
....+.+..+|..+..++|+|+++|++|.+++.. ++.+.......+..++..+- .+.. ...
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~----------------~~~ 540 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK----------------RNR 540 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc----------------cCc
Confidence 6677788999999999999999999999999732 23344444444555554333 2221 234
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+.|||+.+....++|.|.++++|+.++.++.|...+|.+||..++.+.... ...++.-++..|+||...|+..++++|
T Consensus 541 ~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa 620 (952)
T KOG0735|consen 541 KIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA 620 (952)
T ss_pred EEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988776533 233566699999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccC-CccccccCCc
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIP-NVKWEDVGGL 434 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~-~~~~~~i~g~ 434 (702)
...+...-... ..+ .+|.++|.++++.+.|...|......+ ...|++++|+
T Consensus 621 i~~a~leris~---------------------------~~k-lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~ 672 (952)
T KOG0735|consen 621 IHEAFLERISN---------------------------GPK-LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGL 672 (952)
T ss_pred HHHHHHHHhcc---------------------------Ccc-cchHHHHHHHHHhcChHHhhhccccccCCCCceecccH
Confidence 98876322111 112 678999999999999988876654444 4899999999
Q ss_pred ccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHH
Q 045279 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTL 514 (702)
Q Consensus 435 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 514 (702)
.++|+.+.+.+.+|.+|+.+|...+++.+.|+|||||||||||.+|.++|..++..|+.+++++++++|+|.+|+++|.+
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l 752 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL 752 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 515 FSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 515 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|.+|+...||||||||+|+++++|+-++.++.++++|+||++|||..+-++|+|++||.+|+.||||++||||+|+.++.
T Consensus 753 F~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C 832 (952)
T KOG0735|consen 753 FERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYC 832 (952)
T ss_pred HHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
|+|++.+|.+|++.+........++|++.+| ..|+||+|+||..++-.|.+.|+.+...... .....+.++...+.
T Consensus 833 ~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a--~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~~~~p~~~~~~~~ 908 (952)
T KOG0735|consen 833 PLPDEPERLEILQVLSNSLLKDTDVDLECLA--QKTDGFTGADLQSLLYNAQLAAVHEILKRED--EEGVVPSIDDASLE 908 (952)
T ss_pred CCCCcHHHHHHHHHHhhccCCccccchHHHh--hhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--ccccCCccchhhhh
Confidence 9999999999999999999999999999999 6799999999999999999999999886543 12222234444444
Q ss_pred HH--HhhcCCCCCHHHHHHHHHHHH
Q 045279 675 QA--LSKISPSVSELQIQRYKTLSE 697 (702)
Q Consensus 675 ~a--l~~~~~~~~~~~~~~~~~~~~ 697 (702)
.. ..+.+|+.+.-+-..+.....
T Consensus 909 si~~~~~~~~s~~~~~~~~~~~~~~ 933 (952)
T KOG0735|consen 909 SIFSDSKRKPSRSALDNRKGQDVYS 933 (952)
T ss_pred hhhhccCCCccccccchhhhhhHHH
Confidence 33 346677777644444444333
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=532.14 Aligned_cols=489 Identities=48% Similarity=0.739 Sum_probs=445.0
Q ss_pred hhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceE
Q 045279 142 VPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIV 221 (702)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il 221 (702)
.++.++..+..++..++.+++++||||||||+++++++.. +..+..+++......+.|..+..+..+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 3566677778889999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcc
Q 045279 222 FIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~ 301 (702)
++||+|.+.+.+.........++..+++..+++.. ... +.+++.+|.+..+++++++++||+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-----------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~ 142 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-----------------RGQ-VIVIGATNRPDGLDPAKRRPGRFD 142 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-----------------CCc-eEEEeecCCccccChhHhCccccc
Confidence 99999999998877666778899999999988653 123 889999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccC
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHS 381 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~ 381 (702)
..+.+..|+...+.+|+.............+...++..+.||.+.++..++..+...+.++...
T Consensus 143 ~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~---------------- 206 (494)
T COG0464 143 REIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID---------------- 206 (494)
T ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc----------------
Confidence 9999999999999999999888887777788999999999999999999999998888887640
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~ 461 (702)
.......++.+++..+++.+.|+ +......+.+.|.+++|++.++..+.+.+.+++++++.|.+.+..
T Consensus 207 ----------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~ 274 (494)
T COG0464 207 ----------LVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLR 274 (494)
T ss_pred ----------cCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCC
Confidence 00122467889999999998887 555667789999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE 541 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 541 (702)
++.|+|||||||||||++|+++|.+++.+|+.+..++++++|+|+++++++.+|..|+...||||||||+|++.+.|+.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~ 354 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS 354 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCC--CCCC
Q 045279 542 GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPI--DDSV 619 (702)
Q Consensus 542 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~ 619 (702)
......++++++|.+|++.....+|+||+|||+|+.+|++++||||||..|+||+|+.++|.+||+.+++.... ..++
T Consensus 355 ~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~ 434 (494)
T COG0464 355 EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDV 434 (494)
T ss_pred CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhh
Confidence 77766899999999999999999999999999999999999999999999999999999999999999996554 5678
Q ss_pred CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045279 620 DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTL 695 (702)
Q Consensus 620 ~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 695 (702)
+++.++ ..++||+|+||..+|++|++.++++.. ...|+++||..|+++++|+++ |++|
T Consensus 435 ~~~~l~--~~t~~~sgadi~~i~~ea~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 435 DLEELA--EITEGYSGADIAALVREAALEALREAR----------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred hHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHhc----------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 999999 578999999999999999999999874 237999999999999999988 7766
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-56 Score=440.89 Aligned_cols=251 Identities=45% Similarity=0.721 Sum_probs=239.7
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|++|||+++.++.+++.+..|+++|++|.++|+.||+|+|||||||||||.+||++|++.++.|+.+.+|+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|+.+|+|++.+.+|.+|+.|+.+.||||||||||++..+|.+++ ....++.+-+||++|||+....++-||+|||++
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999999997653 346788889999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+.||||++||||||+.|+||+|+.+.|.+||+.+.+++.+..++|++.+| ..|+||||+||+++|.+|++.|+++...
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la--~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA--RLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH--HhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999 7899999999999999999999999765
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.||++||.+|..++..
T Consensus 379 -----------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 379 -----------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred -----------eecHHHHHHHHHHHHh
Confidence 8999999999998854
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=401.14 Aligned_cols=280 Identities=35% Similarity=0.595 Sum_probs=256.0
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|+||.|+.++|+.|.+++..|+..|+.|.. ..+|.+|+|++||||||||+|||++|.+++..|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 3455678999999999999999999999999999999986 467889999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCC----CCcEEEEEec
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADK----RKGVFVIGAT 572 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~----~~~~~vI~at 572 (702)
.+.++|.|++|+.+|-+|+.|+...|++|||||||+|+.+|+.+. +..++++.++||.+|||..+ ...|+|++||
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999999998764 56789999999999999643 2449999999
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
|.|+.||.||+| ||.+.|++|+|+.+.|..+++..++......+++++.++ ..++||||+||+++|++|.+.++++
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~la--e~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLA--ERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHH--HHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999 6689999999999999999999998
Q ss_pred HHhhcC------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Q 045279 653 KLISSK------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702 (702)
Q Consensus 653 ~~~~~~------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (702)
...... ...++....|+..||+.|+++++||++...+.+|++|...|+++
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 875432 11222235799999999999999999999999999999999975
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=379.15 Aligned_cols=249 Identities=43% Similarity=0.695 Sum_probs=229.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.-..+.++++||+|+++.+++|++.|..|+.+|++|..+|+.||.|||||||||||||.||+|+|++.++.|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+..|.|+....++++|..|+..+||||||||||.+...+..... ....|.+-+||.+||++..
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-------------- 287 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-------------- 287 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--------------
Confidence 99999999999999999999999999999999999988865432 2335566678888887653
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++|-||+|||+++.|||||+||||||+.|+||.|+.+.|.+||+.+.+++.+..++++..+++.++|++|+||+++
T Consensus 288 ---~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 288 ---RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAI 364 (406)
T ss_pred ---CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|.+|.+.|++.- +..+|++||.++.+.+.
T Consensus 365 ctEAGm~AiR~~--------------------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 365 CTEAGMFAIRER--------------------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHhHHHHHhc--------------------------------cCeecHHHHHHHHHHHH
Confidence 999999998751 24789999999988764
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=351.68 Aligned_cols=249 Identities=38% Similarity=0.657 Sum_probs=235.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|+++|.++||++-.|+.+++++..|+.|.++|+++|+.||+|+|+|||||||||++|+++|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|.|++...+|.+|..|+.+.|+||||||+|+++.+|-+.. .....+++-+||++|||+....++-||++||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 999999999999999999999999999999999999996553 34678899999999999999999999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
||||++||||+|+.|+||+|+..+++-+|.....++.+..++|++.+. ..-+..||+||..+|++|.+.|+++...
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v--~rpdkis~adi~aicqeagm~avr~nry-- 382 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLV--ARPDKISGADINAICQEAGMLAVRENRY-- 382 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHh--cCccccchhhHHHHHHHHhHHHHHhcce--
Confidence 999999999999999999999999999999999999999999999998 5568999999999999999999999764
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.|...||++|.+..-.
T Consensus 383 ---------vvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 383 ---------VVLQKDFEKAYKTVVK 398 (408)
T ss_pred ---------eeeHHHHHHHHHhhcC
Confidence 7899999999987643
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=383.98 Aligned_cols=244 Identities=43% Similarity=0.692 Sum_probs=232.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+++|+|+-|.++.|+.|++ |...++.|+.|.++|-+.|+|+||+||||||||.|||++|.+.+.||+...+++|-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 47889999999999999998 56778999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL 583 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~ 583 (702)
||.+.+.+|.+|..|+++.||||||||||++.++|......+....+|+||.+|||+..+..++||+|||.|+.||+|+.
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 99999999999999999999999999999999999888777899999999999999999999999999999999999999
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDV 663 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~ 663 (702)
||||||++|.+|.||...|.+||+.++.+.....++|..-|| .-|.||+|+||.|+|+.|+..|..+...
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiA--RGT~GFsGAdLaNlVNqAAlkAa~dga~-------- 527 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIA--RGTPGFSGADLANLVNQAALKAAVDGAE-------- 527 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhc--cCCCCCchHHHHHHHHHHHHHHHhcCcc--------
Confidence 999999999999999999999999999999999999999999 4588999999999999999888877654
Q ss_pred CCccccHHHHHHHHhhcC
Q 045279 664 TPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 664 ~~~~i~~~d~~~al~~~~ 681 (702)
.+++.|++.|-+++-
T Consensus 528 ---~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 528 ---MVTMKHLEFAKDRIL 542 (752)
T ss_pred ---cccHHHHhhhhhhee
Confidence 799999999999873
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=361.79 Aligned_cols=278 Identities=32% Similarity=0.590 Sum_probs=253.8
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|+++.|++..|+.|.+++..|++.|++|.. +..|.+||||||||||||++||+++|.+.+..|+.|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 345679999999999999999999999999999999985 5678899999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-CCCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-DKRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~vI~atn~~~~ 577 (702)
++++|.|+++..++++|+.|+.+.|+||||||||++++.|+++.+...+++..+||.+|.|. ...+.++|++|||.|+.
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999997 45678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
||.|+.| ||++.||+|+|+...|..+|+.++...+.. .+.|+..|+ ..|+||||+||.-+++.|.+..++.....
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~--~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELA--RKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHH--hhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999 999999999999999999999999987655 467899999 67999999999999999999999986531
Q ss_pred cC-----------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK-----------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~-----------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.- .......+.||+.||.+++.+++|.+++.++...++|.+.|+.
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 10 0011234579999999999999999999999999999999985
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=377.21 Aligned_cols=396 Identities=23% Similarity=0.380 Sum_probs=301.7
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCC
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRP 297 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~ 297 (702)
|.|+++.|+|.++.+. . ..+.+..+...+.. .+..+++++ . ...+++.|.+
T Consensus 82 ~~~~vl~d~h~~~~~~-----~-~~r~l~~l~~~~~~-------------------~~~~~i~~~-~--~~~~p~el~~- 132 (489)
T CHL00195 82 PALFLLKDFNRFLNDI-----S-ISRKLRNLSRILKT-------------------QPKTIIIIA-S--ELNIPKELKD- 132 (489)
T ss_pred CcEEEEecchhhhcch-----H-HHHHHHHHHHHHHh-------------------CCCEEEEEc-C--CCCCCHHHHh-
Confidence 6899999999887321 1 22333333333332 123344444 2 2457777776
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 045279 298 GRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSI 376 (702)
Q Consensus 298 ~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~ 376 (702)
-+ .++.++.|+.+++.+++..+....... ....+..+++.+.|++..+++.++..+.... .. +
T Consensus 133 -~~-~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-------~~-------~ 196 (489)
T CHL00195 133 -LI-TVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-------KT-------I 196 (489)
T ss_pred -ce-eEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CC-------C
Confidence 33 678999999999999998887654333 2345788999999999999998877543210 00 0
Q ss_pred ccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcccc-ccCCccccccCCcccchhhhHHHHHHHhhChHHH
Q 045279 377 AEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFS-AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455 (702)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~-~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~ 455 (702)
+ .+ ......+.-.+.+.. . .... ..+...|++++|++.+|+++.+.... .....
T Consensus 197 ~-------------~~---~~~~i~~~k~q~~~~---~---~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~ 251 (489)
T CHL00195 197 D-------------EN---SIPLILEEKKQIISQ---T---EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQA 251 (489)
T ss_pred C-------------hh---hHHHHHHHHHHHHhh---h---ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHH
Confidence 0 00 000001111111111 0 1111 12467899999999999988764322 23455
Q ss_pred HHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 456 ~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
.++|.++++|+|||||||||||++|+++|++++.+|+.++++.+.++|+|+++..++++|..|+...||||||||+|.+.
T Consensus 252 ~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 252 SNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAF 331 (489)
T ss_pred HhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCC-CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 536 TKRGK-EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 536 ~~r~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
.+++. +..+...+++++++..|+. ...+++||+|||+++.||++++||||||.+|+|++|+.++|.+||+.++++..
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~ 409 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR 409 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC
Confidence 76543 3445678999999999985 34679999999999999999999999999999999999999999999999865
Q ss_pred CC--CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC--CCHHHHH
Q 045279 615 ID--DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS--VSELQIQ 690 (702)
Q Consensus 615 ~~--~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~--~~~~~~~ 690 (702)
.. .+.+++.+| ..|+||+|+||+++|++|+..|+.+. ..++.+||..|++++.|. ...++++
T Consensus 410 ~~~~~~~dl~~La--~~T~GfSGAdI~~lv~eA~~~A~~~~------------~~lt~~dl~~a~~~~~Pls~~~~e~i~ 475 (489)
T CHL00195 410 PKSWKKYDIKKLS--KLSNKFSGAEIEQSIIEAMYIAFYEK------------REFTTDDILLALKQFIPLAQTEKEQIE 475 (489)
T ss_pred CCcccccCHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHcC------------CCcCHHHHHHHHHhcCCCcccCHHHHH
Confidence 43 478899999 67899999999999999998887653 268999999999999996 4667899
Q ss_pred HHHHHHHHH
Q 045279 691 RYKTLSETF 699 (702)
Q Consensus 691 ~~~~~~~~~ 699 (702)
.+++|...-
T Consensus 476 ~~~~Wa~~~ 484 (489)
T CHL00195 476 ALQNWASSG 484 (489)
T ss_pred HHHHHHHcC
Confidence 999998753
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=386.35 Aligned_cols=257 Identities=43% Similarity=0.692 Sum_probs=240.3
Q ss_pred cccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Q 045279 112 AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191 (702)
Q Consensus 112 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~ 191 (702)
.+...+.++++|+||+|++++|.+|++.|.+|++||+.|.++|+.++++||||||||||||++|+++|++.+.+|+.+.+
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.++.+.|+|+++..++.+|.+|+...|+|+|+||||.+...++....+...|++++||+.||+...
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~-------------- 567 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA-------------- 567 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--------------
Confidence 999999999999999999999999999999999999999999765668889999999999998764
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
..+|+||||||+|+.||+|++||||||+.|++++|+.+.|.+||+..++++.+..++++..+|..|+||+|+||..+
T Consensus 568 ---~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 568 ---LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ---cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
|++|+..+++..+.. ..|+..+|+++++...++.
T Consensus 645 Cq~A~~~a~~e~i~a------------------------------~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 645 CQEAALLALRESIEA------------------------------TEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHhccc------------------------------ccccHHHHHHHHHhhcccC
Confidence 999999999876541 3578899999998877654
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=342.07 Aligned_cols=256 Identities=38% Similarity=0.632 Sum_probs=239.4
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
..+|+.+|+.+||++...+.+.+.|..|.+||++|..+|+..|+|+|||||||||||.+|+++|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|+|++.+.+|.+|-.|+...|+|||+||||++...|.+++ .+...+.+-+||+++||+....++-||+|||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 999999999999999999999999999999999999886543 45678888999999999999999999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|||++||||+|+.|+||+|+.+.|.+|++.+-+++.+....++..+| ....|.||++++.+|-+|.+.|+++..-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia--ekm~gasgaevk~vcteagm~alrerrv-- 374 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA--EKMPGASGAEVKGVCTEAGMYALRERRV-- 374 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH--HhCCCCccchhhhhhhhhhHHHHHHhhc--
Confidence 999999999999999999999999999999999999999999999999 5678999999999999999999999764
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
.+|++||+.|..++-..-++..+
T Consensus 375 ---------hvtqedfemav~kvm~k~~e~nm 397 (404)
T KOG0728|consen 375 ---------HVTQEDFEMAVAKVMQKDSEKNM 397 (404)
T ss_pred ---------cccHHHHHHHHHHHHhccccccc
Confidence 89999999999988654444333
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=363.84 Aligned_cols=444 Identities=30% Similarity=0.479 Sum_probs=336.9
Q ss_pred CCCCCccc--ccCHHHHHHHHHH-HhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechh
Q 045279 118 KEGPRFQD--LGGMESVLEELKM-EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-PFYKISATE 193 (702)
Q Consensus 118 ~~~~~~~~--i~G~~~~k~~l~~-~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~~i~~~~ 193 (702)
.+...|.+ |+|++.....+-. +....+.-|++.+++|++..+|+|||||||||||.+||.|.+.++. +--.+|+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 55666766 6899999877654 4455667779999999999999999999999999999999999974 446789999
Q ss_pred hhcccccccHHHHHHHHHHHHhhC--------CceEEechhhHhhhcchhh--hHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRTA--------PSIVFIDEIDAIASKRENL--QREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~~--------p~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+.+.|+|+++.+++.+|..|.... --||++||||.++..+++. .......++++||.-||+...
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq------ 366 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ------ 366 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh------
Confidence 999999999999999999987431 2399999999999988764 346778999999999998765
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cCCcccHHHHHhh
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VEGSFDLVKIARS 339 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~~~~~~~~la~~ 339 (702)
-.+|+|||.||+.+.||.||+|||||...+++..|++.-|++|++.+.+++. +..++++.++|..
T Consensus 367 -----------LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l 435 (744)
T KOG0741|consen 367 -----------LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAAL 435 (744)
T ss_pred -----------hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH
Confidence 2459999999999999999999999999999999999999999998877653 5667899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc
Q 045279 340 TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG 419 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~ 419 (702)
|.+|+|++|..+++.|...|+.|.+.... .....+...+.+.++..||..++..++|......
T Consensus 436 TKNfSGAEleglVksA~S~A~nR~vk~~~-----------------~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~se 498 (744)
T KOG0741|consen 436 TKNFSGAELEGLVKSAQSFAMNRHVKAGG-----------------KVEVDPVAIENLKVTRGDFLNALEDVKPAFGISE 498 (744)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhhccCc-----------------ceecCchhhhheeecHHHHHHHHHhcCcccCCCH
Confidence 99999999999999999999998764321 0112344566789999999999999998764211
Q ss_pred ccccCCccccc--cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 420 FSAIPNVKWED--VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 420 ~~~~~~~~~~~--i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
. .++. ..|+-.--..+.+.+.....+.+..+.-...+-.++||.||||+|||+||-.+|...+.||+.+-.+
T Consensus 499 e------~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp 572 (744)
T KOG0741|consen 499 E------DLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP 572 (744)
T ss_pred H------HHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh
Confidence 0 0000 1111111111111111111111222222335567799999999999999999999999999988665
Q ss_pred cccccCcCchHH----HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC-CcEEEEEec
Q 045279 498 ELLNKYVGESEL----AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR-KGVFVIGAT 572 (702)
Q Consensus 498 ~l~~~~~g~~~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~at 572 (702)
+-+ +|.+|. .++.+|+.|.+.+-+||++|+++.|..-..- +-.++.-+++.|+..+....+. .+.+|++||
T Consensus 573 e~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-GPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 573 EDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred HHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc-CchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 532 454443 4899999999989999999999998843211 2235567788888888776544 467777888
Q ss_pred CCCCccCc-cccCCCccceEEEcCCCCH-HHHHHHHH
Q 045279 573 NRPDVMDR-AVLRPGRFGKLLYVPLPTP-DERGLILE 607 (702)
Q Consensus 573 n~~~~ld~-a~~r~gRf~~~i~~~~p~~-~~r~~il~ 607 (702)
.+.+.|.. .++. .|+..+.+|..+. ++..+++.
T Consensus 649 S~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 649 SRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred cHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 77766554 3344 8999999998765 66666654
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=371.31 Aligned_cols=271 Identities=38% Similarity=0.651 Sum_probs=243.4
Q ss_pred cccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Q 045279 112 AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191 (702)
Q Consensus 112 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~ 191 (702)
-+.+..-+.++|+||+|++++..+|..++.+|+++|++|+.+|+..+.|||||||||||||.||+++|++.+..|+.|.+
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 34466678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+|.+.|+|+++..++.+|+.|+...|||||+||+|.|.+.++......+.|++++||..||++..
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~-------------- 644 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE-------------- 644 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--------------
Confidence 999999999999999999999999999999999999999999988889999999999999998754
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc--CcccCCcccHHHHHhhCC--CCCHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR--NLRVEGSFDLVKIARSTP--GFVGAD 347 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~--~~~~~~~~~~~~la~~t~--g~~~~d 347 (702)
+..|.||||||+|+-||||++|||||+..+++++|+.++|.+||+.+++ +..+..+++++.+++.+. ||+|+|
T Consensus 645 ---R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGAD 721 (802)
T KOG0733|consen 645 ---RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGAD 721 (802)
T ss_pred ---ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhh
Confidence 4459999999999999999999999999999999999999999999999 666788899999999877 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 348 LAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 348 l~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
|..||++|...|+++.+...........+. .....+++.+|..+++.+.|+.
T Consensus 722 LaaLvreAsi~AL~~~~~~~~~~~~~~~~~----------------~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 722 LAALVREASILALRESLFEIDSSEDDVTVR----------------SSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCccccee----------------eeeeeecHHHHHHHHHhcCCCc
Confidence 999999999999988776433211110000 0124678899999999988764
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=392.15 Aligned_cols=457 Identities=21% Similarity=0.282 Sum_probs=361.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++|.++|.++.++++++.+ ..+.++|.+|+|+||+|||.++..+|.+. +..++.++.
T Consensus 168 klDPvIGRd~EI~r~iqIL-------------~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQIL-------------SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHH-------------hccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 7999999999999999877 45678999999999999999999999986 567899999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.++.+ |.|+++.+++.+++......+.||||||||.+.+.+...+ ......++.+.|.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA------------------ 296 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA------------------ 296 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh------------------
Confidence 999877 8999999999999999988899999999999998775433 2333444444443
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 343 (702)
+|.+.+||||+.-+ +-|+||.| || ..|.+..|+.++...||+.+...++.++.+.+.+-|
T Consensus 297 ------RGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A------ 361 (786)
T COG0542 297 ------RGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA------ 361 (786)
T ss_pred ------cCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH------
Confidence 56799999998755 78999999 99 569999999999999999999999888887666433
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhh--------------------------h---
Q 045279 344 VGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEE--------------------------M--- 394 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~--- 394 (702)
+..|+.++.+++.++..|+++.+.+|+++++...... .|.. .
T Consensus 362 --------l~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~ 432 (786)
T COG0542 362 --------LVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLI 432 (786)
T ss_pred --------HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6677888888888888899999999888876655322 1110 0
Q ss_pred h---hh--------------cccHhHHHHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhh
Q 045279 395 E---RL--------------TITMTDFEEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIK 450 (702)
Q Consensus 395 ~---~~--------------~i~~~d~~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 450 (702)
. .+ .++.+++..++..|+.-... +.....+...-..+.|++.+...+.++|...
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra-- 510 (786)
T COG0542 433 DEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA-- 510 (786)
T ss_pred HHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--
Confidence 0 00 15556777777777643221 1112223334567899999988888877654
Q ss_pred ChHHHHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEeccccccc------------CcCchHHHH
Q 045279 451 FPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNK------------YVGESELAV 511 (702)
Q Consensus 451 ~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~------------~~g~~~~~~ 511 (702)
+.|+ +|..++||.||+|+|||.+|++||..+. .+++++++|++..+ |||+.+..
T Consensus 511 ------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG- 583 (786)
T COG0542 511 ------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG- 583 (786)
T ss_pred ------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc-
Confidence 4454 3445789999999999999999999985 79999999999864 99988866
Q ss_pred HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCC-------
Q 045279 512 RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRP------- 575 (702)
Q Consensus 512 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~------- 575 (702)
.+.+.+++++++||+||||++.+ .+++|.||+.||.- ....+++||||||--
T Consensus 584 -~LTEaVRr~PySViLlDEIEKAH-----------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 584 -QLTEAVRRKPYSVILLDEIEKAH-----------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred -chhHhhhcCCCeEEEechhhhcC-----------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 68888899999999999999999 89999999999873 245679999999832
Q ss_pred ---------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-------CCC---CCCCHHHH
Q 045279 576 ---------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK-------PID---DSVDLHTI 624 (702)
Q Consensus 576 ---------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~l 624 (702)
..+.|+|++ |+|.+|.|.+.+.+...+|+..++... ++. .+.-.+++
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l 729 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFL 729 (786)
T ss_pred ccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 146678888 999999999999999999998876642 222 12235677
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 625 AQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 625 a~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+...+-..|.++-|+++|+.-....+.+.+..
T Consensus 730 ~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 730 AEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred HHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 87767778999999999999988888877654
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=337.11 Aligned_cols=250 Identities=38% Similarity=0.633 Sum_probs=235.8
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|.+++|..+..+.+++.+..++.|++.|-.+|+.||+|+|+|||||||||.+|+++|+..+..|+.+-+|
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+++.+|+|++...+|.+|+.|+....|||||||+|++.+.|-++ +.....+.+-+|+.+|||+....++-|+++||+
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 99999999999999999999999999999999999999988554 334667888889999999999999999999999
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+.||||++||||+|+.++|.+|+.+.|..||+.+.+.+.+..++.++.+| .+|.+-+|++||.+|-+|.+.|++...
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ella--rlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLA--RLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHH--hhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 789999999999999999999999887
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
. ..|..||..|..++
T Consensus 404 k-----------~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 K-----------VATEKDFLDAVNKV 418 (435)
T ss_pred h-----------hhhHHHHHHHHHHH
Confidence 5 68889999999877
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=341.54 Aligned_cols=249 Identities=37% Similarity=0.632 Sum_probs=232.9
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|..+|.+++|++...+.+.+.+..|+.||+.|..+|+.||+|++|||+||||||.||+++|+...+.|+++-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
+.+|.|++.+.+|++|.-|...+|+|+||||||++..+|-+.++ ....+.+-+||+++||+.....+-||+|||+.+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999999855433 355667778889999999999999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.||||++||||+|+.|.||.||...+..||..+..++.+..+++++.+. ..-+.+||+||+++|-+|.+.|+++...
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li--~~kddlSGAdIkAictEaGllAlRerRm- 412 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELI--MTKDDLSGADIKAICTEAGLLALRERRM- 412 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHh--hcccccccccHHHHHHHHhHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999998 3347899999999999999999999887
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcC
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.++++||.+|..++-
T Consensus 413 ----------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 413 ----------KVTMEDFKKAKEKVL 427 (440)
T ss_pred ----------hccHHHHHHHHHHHH
Confidence 799999999988774
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=328.17 Aligned_cols=247 Identities=35% Similarity=0.600 Sum_probs=233.4
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|...|.+|||++...+.+.+++..++.|++.|.++|+.||+|+|+|||||||||.+|++.|.+.+..|+.+.++.++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|+|.+.+.+|..|+.|+...|+||||||+|++..+|.++. .....+.+-+||++|||+....++-||++||+.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997653 346678888899999999999999999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|||++|.||+|+.|+||.|+.+.|..|++.+.+++.+..+++++.+| .-|++|+|+..+.+|-+|.+.|+++...
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa--RsTddFNGAQcKAVcVEAGMiALRr~at--- 398 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA--RSTDDFNGAQCKAVCVEAGMIALRRGAT--- 398 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh--hcccccCchhheeeehhhhHHHHhcccc---
Confidence 99999999999999999999999999999999999999999999999 5689999999999999999999998654
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+.+||..++..+.
T Consensus 399 --------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 399 --------EVTHEDFMEGILEVQ 413 (424)
T ss_pred --------cccHHHHHHHHHHHH
Confidence 799999999988764
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=342.77 Aligned_cols=273 Identities=34% Similarity=0.582 Sum_probs=239.8
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
.+...++.++|+||.|+.++|+-|.++|..|+..|+.|+.+ .+|.++||++||||||||+||+++|.+++..|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 34556889999999999999999999999999999998853 56789999999999999999999999999999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+++.|.|++++.++-+|+.|+.++|++|||||||+|++.++.. ..+.++|+-.+||.+||+.+....
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e----------- 348 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE----------- 348 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-----------
Confidence 99999999999999999999999999999999999999988764 578899999999999998765221
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
....|+|+|+||.||+||.||+| ||...|++|+|+.+.|..+++..++........++..++..++||+|.||.++
T Consensus 349 --~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 349 --NSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred --cceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 12349999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|++|.+.+++|.+....++... +.. .+.. ..+++..||+.++..+.|+..
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~-------------~la-kE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIR-------------QLA-KEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhh-------------hhh-hhcc-ccccchhhHHHHHHHcCcCCC
Confidence 9999999999877654322111 000 1111 257899999999999988654
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=385.26 Aligned_cols=458 Identities=20% Similarity=0.261 Sum_probs=325.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+++.++|.++.++++.+.+ ..+.++++||+||||||||++|+++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL-------------~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHH-------------hccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 6899999999999999866 22456789999999999999999999874 456677777
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.. .+.|+++.+++.+|..+....++||||||||.+.+.+.... .....+++.. .+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp---~L~--------------- 312 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP---LLS--------------- 312 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH---HHh---------------
Confidence 77764 47889999999999998877889999999999987654211 1111222222 222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 343 (702)
.|.+.|||+||..+ ..|++|.| || ..|.++.|+.+++..|++.+...+...+.+.+...+
T Consensus 313 ------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a------ 377 (758)
T PRK11034 313 ------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA------ 377 (758)
T ss_pred ------CCCeEEEecCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH------
Confidence 45699999999865 68999999 99 579999999999999999988888777666554333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc----
Q 045279 344 VGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG---- 419 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~---- 419 (702)
+..|+.++.+++.++..|+++.+.++++++...+.+. ......++.+|+...+..|..-.....
T Consensus 378 --------l~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~----~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~ 445 (758)
T PRK11034 378 --------VRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV----SKRKKTVNVADIESVVARIARIPEKSVSQSD 445 (758)
T ss_pred --------HHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcc----cccccccChhhHHHHHHHHhCCChhhhhhhH
Confidence 3334444444444455555555555555443322110 011235777888888877764321111
Q ss_pred ---ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 420 ---FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 420 ---~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
...+....-..+.|++.+++.+...+....... ....+|..++||+||||||||++|+++|..++.+|+.+++
T Consensus 446 ~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~ 521 (758)
T PRK11034 446 RDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_pred HHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeec
Confidence 111112223458899999888888775431100 0012344579999999999999999999999999999999
Q ss_pred ccccc------------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC----
Q 045279 497 PELLN------------KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---- 560 (702)
Q Consensus 497 ~~l~~------------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---- 560 (702)
+++.. .|+|.... ..+.+.++..+++||||||+|.+. .++++.|++.|+..
T Consensus 522 se~~~~~~~~~LiG~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd 588 (758)
T PRK11034 522 SEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTD 588 (758)
T ss_pred hhhcccccHHHHcCCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeec
Confidence 88753 24443221 134445566678999999999998 78999999999842
Q ss_pred -----CCCCcEEEEEecCCC-------------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 561 -----DKRKGVFVIGATNRP-------------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 561 -----~~~~~~~vI~atn~~-------------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
....+++||+|||.. ..+.|.|++ |+|.+|.|++++.++..+|+..++
T Consensus 589 ~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 123578999999932 236678877 999999999999999999998765
Q ss_pred cc-------CCCCC---CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 611 RK-------KPIDD---SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 611 ~~-------~~~~~---~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.+ .++.. +.-++.|+...+...|.++.|+++++.-...++.+.+..
T Consensus 667 ~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~ 722 (758)
T PRK11034 667 VELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_pred HHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 52 22222 223567776666778889999999999999888887654
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=389.01 Aligned_cols=455 Identities=22% Similarity=0.307 Sum_probs=327.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++++++|.++.+.++.+.+ ..+..+++||+||||||||++++++|+.+ +..++.+++
T Consensus 180 ~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 7899999999999988766 33456789999999999999999999987 678999999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
+.+.. .+.|+++.+++.+|+.+....++||||||+|.+.+.+....+. ....+.|...+.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~---------------- 308 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS---------------- 308 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----------------
Confidence 99884 5889999999999999987778999999999998765322111 112222333333
Q ss_pred CCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~ 344 (702)
.|.+.+||+||..+ .+|+++.| ||. .|.++.|+.+++.+|++.....+...+... ++
T Consensus 309 -----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~----------i~ 370 (731)
T TIGR02639 309 -----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVK----------YS 370 (731)
T ss_pred -----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcc----------cC
Confidence 35699999999743 68999999 995 799999999999999998776544322221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC-------
Q 045279 345 GADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR------- 417 (702)
Q Consensus 345 ~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~------- 417 (702)
... +..++..+.+++.++..|+++.+.++++++...+.+.. .....++.+|+..++..+..-...
T Consensus 371 ~~a----l~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~----~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~ 442 (731)
T TIGR02639 371 DEA----LEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA----KKKANVSVKDIENVVAKMAHIPVKTVSVDDR 442 (731)
T ss_pred HHH----HHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc----ccccccCHHHHHHHHHHHhCCChhhhhhHHH
Confidence 222 22333344444445555566666555555433322110 112458889999998877532210
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.....+.......+.|++.+++.+...+... +.|+ +|..+++|+||||||||++|+++|..++.+++.
T Consensus 443 ~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~ 514 (731)
T TIGR02639 443 EKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER 514 (731)
T ss_pred HHHHHHHHHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence 1111222334556788888888777665443 3333 233458999999999999999999999999999
Q ss_pred Eeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-
Q 045279 494 IKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA- 560 (702)
Q Consensus 494 i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~- 560 (702)
++++++.+. |+|..+.. .+...++..+++||||||+|.+. ..+++.|++.|+..
T Consensus 515 ~d~se~~~~~~~~~lig~~~gyvg~~~~~--~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 515 FDMSEYMEKHTVSRLIGAPPGYVGFEQGG--LLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYAT 581 (731)
T ss_pred EeCchhhhcccHHHHhcCCCCCcccchhh--HHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCe
Confidence 999887542 45543322 45566667788999999999998 78999999998863
Q ss_pred --------CCCCcEEEEEecCCCC-------------------------ccCccccCCCccceEEEcCCCCHHHHHHHHH
Q 045279 561 --------DKRKGVFVIGATNRPD-------------------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILE 607 (702)
Q Consensus 561 --------~~~~~~~vI~atn~~~-------------------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~ 607 (702)
....+++||+|||... .+.|.|+. |||.+|.|.+++.++..+|++
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~ 659 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQ 659 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHH
Confidence 1245789999998631 25677776 999999999999999999998
Q ss_pred HHhccC-------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 608 ALARKK-------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 608 ~~~~~~-------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+.+. ++. .+..++.++...+...|.++.|+++++.....++.+.+..
T Consensus 660 ~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~ 718 (731)
T TIGR02639 660 KFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILF 718 (731)
T ss_pred HHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHh
Confidence 877631 111 2233567776667778899999999999998888877653
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=371.51 Aligned_cols=244 Identities=45% Similarity=0.733 Sum_probs=228.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
..+.|.|+.|.+++|+.|.+ +...+++|+.|.++|...|+|+||+||||||||.|||++|.+.+.||+.+++++|+..+
T Consensus 306 t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 45899999999999999998 55779999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC----CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK----EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+|.....+|.+|..|+...|||+||||||++...|++ ..+......+|+||.+|||+.....|+|+++||+++.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999952 345567899999999999999889999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
+|++||||||+.|++++|+...|.+|++.++++.++. .++++..+| ..|.||+|+||.|+|++|+..|.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a--~~t~gf~gadl~n~~neaa~~a~r~~~~--- 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA--SLTPGFSGADLANLCNEAALLAARKGLR--- 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH--hcCCCCcHHHHHhhhhHHHHHHHHhccC---
Confidence 9999999999999999999999999999999998885 678888888 7899999999999999999999998765
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+..||+.|++++.
T Consensus 540 --------~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 540 --------EIGTKDLEYAIERVI 554 (774)
T ss_pred --------ccchhhHHHHHHHHh
Confidence 799999999999553
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=330.04 Aligned_cols=296 Identities=31% Similarity=0.506 Sum_probs=248.3
Q ss_pred hhhhcCCCCCCcccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 101 EESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
++..+...++.+.+..+++.++|+|+.|++.+|+.|+++|+.|+.+|++|.. +..|.+++||||||||||++||+++|.
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 4445556677888899999999999999999999999999999999999885 355789999999999999999999999
Q ss_pred HhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 181 ~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
+.+..|+.|+.++|++.|.|++++.++.+|+.|+.+.|+||||||||.+++.++...++..+|+-++||.+|.+...
T Consensus 189 EAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~--- 265 (439)
T KOG0739|consen 189 EANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN--- 265 (439)
T ss_pred hcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc---
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999997543
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhh
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARS 339 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 339 (702)
....|+|+||||.||.||.+++| ||...|++|.|....|..+|+.++...... ...++..|++.
T Consensus 266 -------------d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 266 -------------DNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARK 330 (439)
T ss_pred -------------CCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhh
Confidence 22349999999999999999999 999999999999999999999888776543 35689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccc--------cccCc---ccccCCC---ChhhhhhhcccHhHHH
Q 045279 340 TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIA--------EQHSD---DWWRQPW---LPEEMERLTITMTDFE 405 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~---~~~~~~~~~i~~~d~~ 405 (702)
|+||+|+|+.-+++.|.+..++++..........+... +-|.- ..+...| ..+.+-...+|+.||.
T Consensus 331 TeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~ 410 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFL 410 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHH
Confidence 99999999999999999999998876543322222110 01110 0000111 1223335679999999
Q ss_pred HHHhccCCCC
Q 045279 406 EATKMVQPSS 415 (702)
Q Consensus 406 ~~l~~~~p~~ 415 (702)
+++...+|..
T Consensus 411 k~l~~tkPTv 420 (439)
T KOG0739|consen 411 KSLSRTKPTV 420 (439)
T ss_pred HHHhhcCCCC
Confidence 9998877653
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=353.36 Aligned_cols=250 Identities=40% Similarity=0.661 Sum_probs=232.2
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|++.|++|+|++.+++.+.+.+..++.+++.|.++|+.+|+|+|||||||||||++|+++|+.++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|+|+++..++.+|..|+...|+||||||+|.+..+|.+.. .....+++.++|..|+++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 999999999999999999999999999999999998774332 23557889999999999888889999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+||+++||||||..|+|++|+.++|..||+.++.+.++..+++++.++ ..++||+|+||+++|++|++.|+++...
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la--~~t~g~sgaDI~~l~~eA~~~A~r~~~~-- 372 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFV--SRPEKISAADIAAICQEAGMQAVRKNRY-- 372 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999999999999899999999 6789999999999999999999988532
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.|+.+||.+|+.++...
T Consensus 373 ---------~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 373 ---------VILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------ccCHHHHHHHHHHHHhc
Confidence 79999999999998554
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=356.06 Aligned_cols=268 Identities=39% Similarity=0.650 Sum_probs=237.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-|+++|+||+|++++|.+|.+.+..|++||++|.. |+++..|||||||||||||.+|+|+|.++...|+.|.+.++..-
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 47889999999999999999999999999999986 88999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh--HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ--REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
|+|+++++++.+|+.|+...|||||+||+|+++++++..+ .+...|++.+||..||+++. ...
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~---------------~~s 809 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD---------------SSS 809 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC---------------CCC
Confidence 9999999999999999999999999999999999997754 46779999999999998753 012
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCC-HHHHHHHHHHhhcCcccCCcccHHHHHhhCC-CCCHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPD-ENARVQILSVLTRNLRVEGSFDLVKIARSTP-GFVGADLAALAN 353 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~~~~~~~~~~~~~~~la~~t~-g~~~~dl~~l~~ 353 (702)
..|+||||||+|+.|||+|+||||||+.+++.+++ .+.+..||+.+.+++.++.++++..+|+.++ .|+|+|+.++|.
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 34999999999999999999999999999999884 6778889999999999999999999998874 799999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
+|...|++|.+.......... ...+-..+.++++||.++.+.++|+..
T Consensus 890 dA~l~AikR~i~~ie~g~~~~---------------~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 890 DAMLAAIKRTIHDIESGTISE---------------EEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHhhhccccc---------------cccCCceEEEEHHHHHHHHHhcCCccc
Confidence 999999999886543111100 111223578999999999999998764
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=333.47 Aligned_cols=274 Identities=33% Similarity=0.569 Sum_probs=243.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
-.++|++|+|++.+++.+++.+..|+.++++|...+ +.+++|+|||||||||||.+|+++|++.+.+|+.+..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 367999999999999999999999999999997544 5789999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC--cEEEEEecCCCCccCc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK--GVFVIGATNRPDVMDR 580 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vI~atn~~~~ld~ 580 (702)
|.|++++.++.+|..|....|+||||||+|++.+.|+.+.+.....+-++++..+||+...+ +|+|++|||+|..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 99999999999999999999999999999999999977778888999999999999986554 5999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc--C
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS--K 658 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~--~ 658 (702)
|++| |+...+++++|+.++|.+|++.++++.++..++|+..+| ..|+||||.||+++|..|+..++++.+... .
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA--~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIA--QMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHH--HhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 9999 999999999999999999999999999999999999999 679999999999999999999999988764 1
Q ss_pred CC---------------CCCCCccccHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHHhc
Q 045279 659 SS---------------SDVTPFTIKLTHFEQALSKISPSVSE--LQIQRYKTLSETFKA 701 (702)
Q Consensus 659 ~~---------------~~~~~~~i~~~d~~~al~~~~~~~~~--~~~~~~~~~~~~~~~ 701 (702)
.+ .......++++||.+|..++.++++. ..+...+.|...+++
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00 01113679999999999988776443 233445666655544
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=312.47 Aligned_cols=243 Identities=34% Similarity=0.559 Sum_probs=219.2
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..+++++++++|+++.|+.++- |...++.|+.|.+ ..|+++|||||||||||++|+++|++.+.||+.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHH-HHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3467899999999999988754 5566778887665 56899999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
.|+|+....++++|++|+...|||+||||+|++.-.|..+. .+...+++|.||++|||...+..|+.|++||+|+.||+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999999998776543 34557899999999999999999999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHH-HHHHHHHHHHHHHHhhcCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAA-MMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~-~~~~a~~~a~~~~~~~~~~ 659 (702)
++.+ ||...|+|.+|+.++|..|++.+++++++.-+.+++.++ ..+.|+||+||.. +++.|...|+.+..+
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~--~~t~g~SgRdikekvlK~aLh~Ai~ed~e---- 341 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA--AKTKGMSGRDIKEKVLKTALHRAIAEDRE---- 341 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH--HHhCCCCchhHHHHHHHHHHHHHHHhchh----
Confidence 9988 999999999999999999999999999999999999999 6789999999985 777777888887665
Q ss_pred CCCCCCccccHHHHHHHHhhcCCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.|+.+|++.|+.+.++.
T Consensus 342 -------~v~~edie~al~k~r~~ 358 (368)
T COG1223 342 -------KVEREDIEKALKKERKR 358 (368)
T ss_pred -------hhhHHHHHHHHHhhccc
Confidence 69999999999986553
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=353.59 Aligned_cols=244 Identities=44% Similarity=0.742 Sum_probs=231.2
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
...++|.|+.|.+++|+.+.+ +...++.|..|..+|...|+|++|+||||||||.|||++|.+.+.||+.+++|+|+..
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 356899999999999999998 6678899999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|||-....+|.+|.+|+...|||+||||+|++...|+.+ ++...+..+|+||.+|||+..+..++||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999988643 45677889999999999999889999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
+|++||||||+.|.++.||...|.+|++.++++.++..++++..+| ..|.||+|+|+.|++++|+..|.++...
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA--r~tpGfsGAdL~nl~NEAal~aar~n~~---- 376 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA--RGTPGFSGADLANLLNEAALLAARRNKK---- 376 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh--hhCCCcccchHhhhHHHHHHHHHHhcCe----
Confidence 9999999999999999999999999999999999999999999999 6799999999999999999999998764
Q ss_pred CCCCCCccccHHHHHHHHhhc
Q 045279 660 SSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~ 680 (702)
.|++.||++|..++
T Consensus 377 -------~i~~~~i~ea~drv 390 (596)
T COG0465 377 -------EITMRDIEEAIDRV 390 (596)
T ss_pred -------eEeccchHHHHHHH
Confidence 79999999999987
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=335.04 Aligned_cols=226 Identities=41% Similarity=0.632 Sum_probs=212.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|+|+-|.|++|++|.+.| ..++.|+.|.++|-+-|+||||+||||||||+|||++|.+.++||++.+++++-.-
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 44779999999999999999766 78999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
++|....+++.+|..|+..+||||||||||.+.+++........++.+++||..||++.. ...
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q-----------------NeG 439 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ-----------------NEG 439 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc-----------------CCc
Confidence 999999999999999999999999999999999988776555889999999999998865 223
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|+||||||.|+.+|+||.||||||++|.+|.|+..-|.+||..++.+.....+++..-+|+-|+||+|+||.++++.|+.
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 045279 358 LAMK 361 (702)
Q Consensus 358 ~a~~ 361 (702)
.|..
T Consensus 520 kAa~ 523 (752)
T KOG0734|consen 520 KAAV 523 (752)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=343.65 Aligned_cols=254 Identities=44% Similarity=0.709 Sum_probs=234.0
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|++.|++++|++..++.+.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
..+|+|+++..++.+|..|+...|+||||||+|.+.+.|+... .....+.+.+++.++++.....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998876543 2345677888898999888778999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.+|++++||||||..|+||+|+.++|.+||+.++++..+..+.++..++ ..++||+|+||+++|++|++.|+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la--~~t~g~sgadl~~l~~eA~~~a~~~~~~- 358 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA--ELTEGASGADLKAICTEAGMFAIRDDRT- 358 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999999888889999999 6789999999999999999999987432
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
.|+.+||.+|+.+++++...
T Consensus 359 ----------~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 359 ----------EVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred ----------CcCHHHHHHHHHHHhccccc
Confidence 69999999999999886554
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=340.12 Aligned_cols=248 Identities=38% Similarity=0.628 Sum_probs=229.8
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.++|++|+|++..++.+.+.+..++.+++.|..+|+.++.++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
++|+|+++..++.+|..|....|+||||||+|.+..+|... ......+.+.++|..|+++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999877543 223456778889999999887788999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++||||||..|+|++|+.++|.+||+.++.++.+..+++++.++ ..++||+|+||+++|++|++.|+++...
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la--~~t~g~sgAdI~~i~~eA~~~Alr~~r~-- 410 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFI--MAKDELSGADIKAICTEAGLLALRERRM-- 410 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 999999999999999999999999999999999999998899999999 6789999999999999999999988643
Q ss_pred CCCCCCCCccccHHHHHHHHhhcC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+.+||.+|+.++.
T Consensus 411 ---------~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 411 ---------KVTQADFRKAKEKVL 425 (438)
T ss_pred ---------ccCHHHHHHHHHHHH
Confidence 799999999999874
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=364.93 Aligned_cols=471 Identities=20% Similarity=0.237 Sum_probs=314.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-++++++|+++.+.++.+.+ ..+..++++|+||||||||++|+.+|+.+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l-------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDIL-------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHH-------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 38999999999998888766 33456789999999999999999999986 25578888
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.+.+.+ .+.|+++.+++.+|+.+.. ..++||||||||.+.+.+....... ..+.|+..+.
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~~n~Lkp~l~-------------- 313 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD---AANLLKPALA-------------- 313 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc---HHHHhhHHhh--------------
Confidence 888764 4889999999999999865 4678999999999987553211111 1122333332
Q ss_pred CCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-----ccHHHHH
Q 045279 268 SDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-----FDLVKIA 337 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-----~~~~~la 337 (702)
+|.+.+||||+..+ .+||+|.| || ..|.++.|+.+++..||+.+.+.+..++. ..+..++
T Consensus 314 -------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 314 -------RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV 383 (852)
T ss_pred -------CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH
Confidence 46699999998743 69999999 99 57999999999999999887766554333 2355666
Q ss_pred hhCCCCCH-----HHHHHHHHHHHHHHH-H------------HHHHhh---hhccccCcc---ccc--------------
Q 045279 338 RSTPGFVG-----ADLAALANKAGNLAM-K------------RIIDQR---KSELSGNSI---AEQ-------------- 379 (702)
Q Consensus 338 ~~t~g~~~-----~dl~~l~~~a~~~a~-~------------r~~~~~---~~~~~~~~~---~~~-------------- 379 (702)
..+.+|.. .-.-.++++|+.... . +-+... ......+.. ...
T Consensus 384 ~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (852)
T TIGR03345 384 ELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALE 463 (852)
T ss_pred HHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHH
Confidence 77766643 334455666543221 1 000000 000000000 000
Q ss_pred -----cCcccccCCC--------------------Ch---------------------hhhhhhcccHhHHHHHHhccCC
Q 045279 380 -----HSDDWWRQPW--------------------LP---------------------EEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 380 -----~~~~~~~~~~--------------------~~---------------------~~~~~~~i~~~d~~~~l~~~~p 413 (702)
-...|..... .. .......++..|+...+..|+.
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tg 543 (852)
T TIGR03345 464 AELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTG 543 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHC
Confidence 0000000000 00 0000123667777777776653
Q ss_pred CCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC---CCc-ceEEEcCCCCChhHHHHH
Q 045279 414 SSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD---LET-GFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 414 ~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~-~~ll~Gp~GtGKT~la~~ 482 (702)
-..... ...+....-..+.|++.....+.+.+... +.|+. .|. .+||+||||||||.+|++
T Consensus 544 ip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 544 IPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALA 615 (852)
T ss_pred CCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 221110 11111223356888888888887776543 22221 233 489999999999999999
Q ss_pred HHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 483 VANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 483 la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+|..+ ...++.++++++... |+|..+.. .+...++.++++||+|||++.+. .
T Consensus 616 La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-----------~ 682 (852)
T TIGR03345 616 LAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-----------P 682 (852)
T ss_pred HHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-----------H
Confidence 99988 458899999877532 66664433 35566677889999999999988 7
Q ss_pred HHHHHHHHhhhCCC---------CCCcEEEEEecCCC-----------------------------CccCccccCCCccc
Q 045279 548 RLLNQLLIELDGAD---------KRKGVFVIGATNRP-----------------------------DVMDRAVLRPGRFG 589 (702)
Q Consensus 548 ~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-----------------------------~~ld~a~~r~gRf~ 589 (702)
.+++.|++.++... ...+++||+|||.. ..+.|+|++ |++
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~ 760 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT 760 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee
Confidence 88889998887532 23678999999952 125677777 997
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccC--------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 590 KLLYVPLPTPDERGLILEALARKK--------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~--------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+|.|.+++.++..+|+...+... ++. .+.-++.|+...+...|.++.|+++|+.-...++.+.+.
T Consensus 761 -iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l 836 (852)
T TIGR03345 761 -VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998866541 221 222356677655555678999999999988888887654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=366.50 Aligned_cols=470 Identities=20% Similarity=0.274 Sum_probs=320.0
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
.++.++|.++.++++.+.+ ..+.+++++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L-------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQIL-------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHH-------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 6899999999999999877 44567899999999999999999999986 368999999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
+.+.. .|.|+++.+++.+|+.+....++||||||||.+.+.+..........+ |...+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l---Lkp~l~---------------- 304 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI---LKPALA---------------- 304 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH---hHHHHh----------------
Confidence 98875 478999999999999998778899999999999876543222211222 222222
Q ss_pred CCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cC-CcccHHHHHhh
Q 045279 270 ASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VE-GSFDLVKIARS 339 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~-~~~~~~~la~~ 339 (702)
+|.+.+||+|+..+ ..||++.+ || ..|.++.|+.++...|++.....+. +. .+..+..++..
T Consensus 305 -----rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~l 376 (821)
T CHL00095 305 -----RGELQCIGATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKL 376 (821)
T ss_pred -----CCCcEEEEeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46699999999864 68999999 99 5689999999999999987654332 22 12234555565
Q ss_pred CCCCCH-----HHHHHHHHHHHHHHHHH---------HHHhhhhc-------c-ccCccccc----------------cC
Q 045279 340 TPGFVG-----ADLAALANKAGNLAMKR---------IIDQRKSE-------L-SGNSIAEQ----------------HS 381 (702)
Q Consensus 340 t~g~~~-----~dl~~l~~~a~~~a~~r---------~~~~~~~~-------~-~~~~~~~~----------------~~ 381 (702)
+.+|.+ .-.-.++++|+....-. .+.+.... . ........ ..
T Consensus 377 s~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (821)
T CHL00095 377 SDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAII 456 (821)
T ss_pred hhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 655543 33445556554422110 00000000 0 00000000 00
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHH
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEE 454 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~ 454 (702)
..|.... . .......++.+|+..++..++.-..... ...+....-+.+.|++.++..+..++...
T Consensus 457 ~~~~~~~-~-~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~------ 528 (821)
T CHL00095 457 QSKKTEE-E-KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA------ 528 (821)
T ss_pred HHHHhhh-c-ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH------
Confidence 0000000 0 0011245888899888888764322111 11111223356889999988887777543
Q ss_pred HHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc------------cCcCchHHHHHHHH
Q 045279 455 YEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN------------KYVGESELAVRTLF 515 (702)
Q Consensus 455 ~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~------------~~~g~~~~~~~~~f 515 (702)
+.|+ +|...+||+||||||||++|+++|+.+ +.+++.++++++.. .|+|..+.. .+.
T Consensus 529 --~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~--~l~ 604 (821)
T CHL00095 529 --RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGG--QLT 604 (821)
T ss_pred --hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccc--hHH
Confidence 2222 233458999999999999999999987 46899999888743 255544432 466
Q ss_pred HHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCC----------
Q 045279 516 SRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPD---------- 576 (702)
Q Consensus 516 ~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~---------- 576 (702)
..++..+.+||+|||+|.+. .++++.|++.|+... ...+++||+|||...
T Consensus 605 ~~~~~~p~~VvllDeieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~ 673 (821)
T CHL00095 605 EAVRKKPYTVVLFDEIEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGL 673 (821)
T ss_pred HHHHhCCCeEEEECChhhCC-----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcccc
Confidence 77777788999999999998 889999999998631 346899999998531
Q ss_pred ---------------------------ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCC---CCC
Q 045279 577 ---------------------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPID---DSV 619 (702)
Q Consensus 577 ---------------------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~---~~~ 619 (702)
.+.|.|++ |+|.+|.|.+++.++..+|++..+.+ .++. .+.
T Consensus 674 gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~ 751 (821)
T CHL00095 674 GFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTER 751 (821)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHH
Confidence 13356666 99999999999999999998877664 2221 122
Q ss_pred CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 620 DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 620 ~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+.++...+...|.++.|+++++.-...++.+.+..
T Consensus 752 ~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~ 788 (821)
T CHL00095 752 IKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLS 788 (821)
T ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 3566776555667889999999999988888877653
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=292.59 Aligned_cols=229 Identities=40% Similarity=0.648 Sum_probs=214.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++.+++.||+|++-.|+++++.+..|+.+.+++++.|+.|++|||+|||||||||+|++++|+.....|+.+.+++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|+....++.+|..|+.+.|+|+||||||.++.++-..+. ....+++-+|+.+||++..
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq---------------- 291 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ---------------- 291 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc----------------
Confidence 999999999999999999999999999999999987755443 3446778888999998764
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+|-||.+||+.+.+||+++||||+++.|+||.|+..++.-+|..+..++.+...+++..+....+..+++|+.++|.
T Consensus 292 -~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 292 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred -ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|.+.+++.
T Consensus 371 eagm~avr~ 379 (408)
T KOG0727|consen 371 EAGMLAVRE 379 (408)
T ss_pred HHhHHHHHh
Confidence 999998774
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=351.70 Aligned_cols=472 Identities=21% Similarity=0.291 Sum_probs=311.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++++++|.++.++++.+.+ ..+..++++|+||||||||++|+++|..+ +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHH-------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 7999999999999998776 34566889999999999999999999987 678899999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+..+ +.|+++.+++.+|..+.. ..++||||||+|.+.+.+..........+ |...+.
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~---lkp~l~--------------- 304 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM---LKPALA--------------- 304 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHH---hcchhh---------------
Confidence 988744 789999999999998654 46789999999999876543222222222 222222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-----HHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-----LVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-----~~~la~ 338 (702)
+|.+.+||||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+...+.+. +...+.
T Consensus 305 ------~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ 375 (857)
T PRK10865 305 ------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT 375 (857)
T ss_pred ------cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence 46699999999976 58999999 995 688999999999999998887766554322 333334
Q ss_pred hCCCCC-----HHHHHHHHHHHHHHH-------------HHHHHHhhhhc---cccC-ccc---------c---cc----
Q 045279 339 STPGFV-----GADLAALANKAGNLA-------------MKRIIDQRKSE---LSGN-SIA---------E---QH---- 380 (702)
Q Consensus 339 ~t~g~~-----~~dl~~l~~~a~~~a-------------~~r~~~~~~~~---~~~~-~~~---------~---~~---- 380 (702)
.+..|. +.....+++.++... ..+.+...... ...+ ... . ..
T Consensus 376 ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~ 455 (857)
T PRK10865 376 LSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQY 455 (857)
T ss_pred HhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444432 333344555443221 11111000000 0000 000 0 00
Q ss_pred --C-cccccCC--------------------------------------CChh----------------hhhhhcccHhH
Q 045279 381 --S-DDWWRQP--------------------------------------WLPE----------------EMERLTITMTD 403 (702)
Q Consensus 381 --~-~~~~~~~--------------------------------------~~~~----------------~~~~~~i~~~d 403 (702)
. .+|.... ..+. ..-...++.+|
T Consensus 456 ~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 535 (857)
T PRK10865 456 SELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAE 535 (857)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHH
Confidence 0 0000000 0000 00012366777
Q ss_pred HHHHHhccCCCCcCc-------cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCC
Q 045279 404 FEEATKMVQPSSRRE-------GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPP 472 (702)
Q Consensus 404 ~~~~l~~~~p~~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~ 472 (702)
+..++..|+.-.... ....+.......+.|++.+...+...+... +.|+ +|...++|+|||
T Consensus 536 i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~ 607 (857)
T PRK10865 536 IAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPT 607 (857)
T ss_pred HHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCC
Confidence 777777766332211 111122334556888888888777766543 2222 222468999999
Q ss_pred CCChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 473 GCGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 473 GtGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
|||||++|+++|..+ +.+++.++++++... |+|..+.. .+....+..+.+||||||++.+.
T Consensus 608 G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEieka~-- 683 (857)
T PRK10865 608 GVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKAH-- 683 (857)
T ss_pred CCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhhCC--
Confidence 999999999999977 457999998876532 33432222 23344455667999999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCC-------------------------CccCcccc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRP-------------------------DVMDRAVL 583 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~-------------------------~~ld~a~~ 583 (702)
..+++.|++.|+.. ....+++||+|||.. ..+.|+|+
T Consensus 684 ---------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELl 754 (857)
T PRK10865 684 ---------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI 754 (857)
T ss_pred ---------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHH
Confidence 78899999988642 124567899999972 13557787
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccC-------CCCC---CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKK-------PIDD---SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~~---~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+ |+|.++.|.+++.+....|++.++.+. +... +.-++.|+...+...|.++.|+++|+.-+...+.+.
T Consensus 755 n--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 755 N--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred H--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999988876542 2221 223456665555556778999999999998888877
Q ss_pred Hhh
Q 045279 654 LIS 656 (702)
Q Consensus 654 ~~~ 656 (702)
+..
T Consensus 833 iL~ 835 (857)
T PRK10865 833 ILS 835 (857)
T ss_pred HHc
Confidence 653
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=326.85 Aligned_cols=277 Identities=36% Similarity=0.614 Sum_probs=249.4
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+++.|+++.|++.+|+.+.+.+.+++..+..|..+ ..+.+++||.||||+|||+|++++|.+.+..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 34567899999999999999999999999999999864 35678999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecCCCCcc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn~~~~l 578 (702)
++|+|+++..++.+|.-|+...|+|+||||+|++..+|.+......+++..++|.++++. ...++|+||+|||+|+.+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 999999999999999999999999999999999999998888888899999999999986 355689999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS- 656 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~- 656 (702)
|.+++| ||.+++++|+|+.+.|..+|+.++.+.+.. .+.+++.++ ..|+||+|+||.++|++|++..++.....
T Consensus 304 Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~--~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 304 DEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLA--KVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHH--HHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 999999 999999999999999999999999987433 457888888 78999999999999999999888776542
Q ss_pred -cCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Q 045279 657 -SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702 (702)
Q Consensus 657 -~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (702)
.........+.|+..||..|+..++|+++...++.|+.|...|++.
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 2222334456899999999999999999999999999999999863
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=310.97 Aligned_cols=233 Identities=37% Similarity=0.608 Sum_probs=217.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
.-.++|+||+|++.+|+++.+.|..|+++|++|..-+ ++++.||||+||||||||++|+++|++.+..|+.|..+.+++
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4467999999999999999999999999999996433 568999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
.|+|+.++.++.+|..|.+-.|+||||||+|+++..++..+.+..+.+-++|+..+|++.. ....
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s---------------~~~~ 230 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS---------------KDSE 230 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC---------------CCCc
Confidence 9999999999999999999999999999999999999878889999999999999997653 1223
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.|+|+||||+|.++|.|+.| |++++++++.|+..+|..||+.+++...++.++++..+|+.|.||+|+||..+|..|.
T Consensus 231 rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 59999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 045279 357 NLAMKRIIDQR 367 (702)
Q Consensus 357 ~~a~~r~~~~~ 367 (702)
...++.++...
T Consensus 309 ~~~ire~~~~~ 319 (386)
T KOG0737|consen 309 LRPIRELLVSE 319 (386)
T ss_pred HhHHHHHHHhc
Confidence 99999988775
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=355.44 Aligned_cols=473 Identities=21% Similarity=0.301 Sum_probs=316.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+++.++|.++.++++.+.+ ..+..++++|+||||||||++++++|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 7899999999999998766 34566889999999999999999999986 567888988
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.. .|.|+.+..++.+|..+... .+.||||||||.+.+.+...... ...+.|...+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~~~Lk~~l---------------- 298 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM---DAGNMLKPAL---------------- 298 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh---HHHHHhchhh----------------
Confidence 88864 47899999999999988653 58899999999998644322111 1222222222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~ 338 (702)
..|.+.+||+|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+...+.. .+...+.
T Consensus 299 -----~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 299 -----ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT 370 (852)
T ss_pred -----hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 146699999999864 58999999 994 68999999999999999888777665543 3445566
Q ss_pred hCCCCC-----HHHHHHHHHHHHHHHHH-------------HHHHhhh---hccccC--ccc---------------c--
Q 045279 339 STPGFV-----GADLAALANKAGNLAMK-------------RIIDQRK---SELSGN--SIA---------------E-- 378 (702)
Q Consensus 339 ~t~g~~-----~~dl~~l~~~a~~~a~~-------------r~~~~~~---~~~~~~--~~~---------------~-- 378 (702)
.+.+|. +.-.-.++++|+....- +-+.... ...... ... .
T Consensus 371 ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (852)
T TIGR03346 371 LSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEY 450 (852)
T ss_pred hccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 665553 33445566666543211 0000000 000000 000 0
Q ss_pred cc-CcccccCC--------------------------------------CCh------------------hhhhhhcccH
Q 045279 379 QH-SDDWWRQP--------------------------------------WLP------------------EEMERLTITM 401 (702)
Q Consensus 379 ~~-~~~~~~~~--------------------------------------~~~------------------~~~~~~~i~~ 401 (702)
.. ...|.... ..+ +......++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 530 (852)
T TIGR03346 451 ADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTA 530 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCH
Confidence 00 00000000 000 0001124677
Q ss_pred hHHHHHHhccCCCCcCc-------cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEc
Q 045279 402 TDFEEATKMVQPSSRRE-------GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYG 470 (702)
Q Consensus 402 ~d~~~~l~~~~p~~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~G 470 (702)
+|+..++..+....... ....+.......+.|++.+...+...+... +.|+ +|...++|+|
T Consensus 531 ~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~G 602 (852)
T TIGR03346 531 EEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLG 602 (852)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEc
Confidence 77777777664322111 011112224466889998888887776553 2222 3445689999
Q ss_pred CCCCChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 471 PPGCGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 471 p~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
|||||||++|+++|..+ +.+++.++++++... |+|..+. ..+...++..+.+||||||++.+.
T Consensus 603 p~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka~ 680 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKAH 680 (852)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccCC
Confidence 99999999999999987 568999999876432 3444332 245555666778899999999998
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC-------------------------ccCcc
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD-------------------------VMDRA 581 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~-------------------------~ld~a 581 (702)
..+++.|++.|+.. ....+++||+|||... .+.|.
T Consensus 681 -----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe 749 (852)
T TIGR03346 681 -----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE 749 (852)
T ss_pred -----------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence 88999999988753 1246789999999721 24466
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|+. |+|.++.|.+++.++..+|+...+.. .++. .+..++.|+...+...|+.+.|++++++.+...+.
T Consensus 750 l~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 750 FLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred Hhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 766 99999999999999999998876542 2111 12234566655445567889999999999998888
Q ss_pred HHHhhc
Q 045279 652 DKLISS 657 (702)
Q Consensus 652 ~~~~~~ 657 (702)
+.+...
T Consensus 828 ~~~l~~ 833 (852)
T TIGR03346 828 KKILAG 833 (852)
T ss_pred HHHHhC
Confidence 876543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=291.15 Aligned_cols=245 Identities=38% Similarity=0.627 Sum_probs=222.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-+..+++-++|++..++++.+.+..|.+||++|..+|+..+.++|||||||||||.||+++|....+.|+.+++++++..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|.|+....++++|-.|+..+|+|+|+||||++.+.+.... +....+..-+|+.++|++..
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea----------------- 283 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA----------------- 283 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-----------------
Confidence 9999999999999999999999999999999998764432 23335556677888887653
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
..++-||.|||+.+-+||+++||||+++.|+||+|+++.|.+|++.+-+++.+....++..+|...+|.+|+++..+|.+
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|.+.+.+.- +..+|.+||+-+...+
T Consensus 364 agm~alrer--------------------------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 364 AGMYALRER--------------------------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hhHHHHHHh--------------------------------hccccHHHHHHHHHHH
Confidence 999887641 2568889998887654
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=307.35 Aligned_cols=245 Identities=38% Similarity=0.627 Sum_probs=228.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+++|+.++|+-.....+.+.+..++..+.+|.++|+.+|.+++||||||||||.+|+++|..++++|+.+.++.+.++|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
|++.+.+|+.|..|+...|||||+||||+..++|.... +....+.+-+|+.+|+++....+|-+|+|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 99999999999999999999999999999999885543 345567777788899999999999999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
++||||+|+.+.+|+|+...|..|++.+........+.+.+.+. .+.++|+|+|++++|.+|.+.|+++...
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaiv--K~~d~f~gad~rn~~tEag~Fa~~~~~~------ 359 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAIL--KLVDGFNGADLRNVCTEAGMFAIPEERD------ 359 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHH--HHHhccChHHHhhhcccccccccchhhH------
Confidence 99999999999999999999999999999998888899988888 7889999999999999999999988654
Q ss_pred CCCCccccHHHHHHHHhhcCC
Q 045279 662 DVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 662 ~~~~~~i~~~d~~~al~~~~~ 682 (702)
.+-++||..+..++..
T Consensus 360 -----~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 360 -----EVLHEDFMKLVRKQAD 375 (388)
T ss_pred -----HHhHHHHHHHHHHHHH
Confidence 6888999999988765
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=344.11 Aligned_cols=389 Identities=32% Similarity=0.496 Sum_probs=301.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEec
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISA 191 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~ 191 (702)
....+.|++|+|++.++.+|++.|..|+.+|+.|..+++.++++|||+||||||||..|+++|..+ +..|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 356779999999999999999999999999999999999999999999999999999999999887 356778888
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
++..+.|+|+.+.+++.+|+.|+...|+|+|+||||-+++.+...+......++..||..|+++..
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds-------------- 403 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS-------------- 403 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--------------
Confidence 999999999999999999999999999999999999999999888888889999999999998764
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~ 350 (702)
+|.|+||||||+++.+||+++|||||++.++|+.|+.++|.+|+.....++..... ..+..+|..+.||.|+||+.
T Consensus 404 ---RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 404 ---RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred ---CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHH
Confidence 78899999999999999999999999999999999999999999998888773332 34677999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc-ccccCCcccc
Q 045279 351 LANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG-FSAIPNVKWE 429 (702)
Q Consensus 351 l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~-~~~~~~~~~~ 429 (702)
+|.+|+..++++-..+.......-. .....+.+...+|..++....|+..+.. ....|.-..-
T Consensus 481 LCTeAal~~~~r~~Pq~y~s~~kl~----------------~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~ 544 (1080)
T KOG0732|consen 481 LCTEAALIALRRSFPQIYSSSDKLL----------------IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYL 544 (1080)
T ss_pred HHHHHhhhhhccccCeeeccccccc----------------ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcce
Confidence 9999999998875544331111111 1122344788899999998888776642 2222211111
Q ss_pred c-cCCcccchhhhH-------------HHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEE
Q 045279 430 D-VGGLDYLRHEFD-------------RYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHI 494 (702)
Q Consensus 430 ~-i~g~~~~k~~l~-------------~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i 494 (702)
. +.+.......++ +...+.++..+..-...+--...+++.|..|.|-+.+..++-+.+ +.++...
T Consensus 545 ~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~ 624 (1080)
T KOG0732|consen 545 KPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSL 624 (1080)
T ss_pred ecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHH
Confidence 1 111111111111 111111111111000011112347888999999999999998876 5666666
Q ss_pred ecccccccC-cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 495 KGPELLNKY-VGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 495 ~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
..+.++..- .+..+..+..+|..|+...||||||-.+|......
T Consensus 625 ~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 625 DISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 666665543 45677788899999999999999999999877443
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.66 Aligned_cols=246 Identities=42% Similarity=0.713 Sum_probs=225.1
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|.++|++++|++.+|..+.+.+.. +++++.|.+.|..+++|+||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35688999999999999999986654 89999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|+|.++..++.+|..|+...|+||||||+|.+..+|+.. ......+++++||.+|+++....+++||+|||+++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 9999999999999999999999999999999999888653 2345578999999999999888899999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|++++||||||..|++++|+.++|.+|++.++++.+...+.++..++ ..+.||+|+||+++|++|+..|.++..
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la--~~t~G~sgadl~~l~~eA~~~a~~~~~---- 280 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVA--RRTPGFSGADLANLLNEAALLAARKNK---- 280 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999999999999999999999999999999988877788899999 678999999999999999988776532
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..|+.+||+.|+.++.
T Consensus 281 -------~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 281 -------TEITMNDIEEAIDRVI 296 (495)
T ss_pred -------CCCCHHHHHHHHHHHh
Confidence 2699999999999874
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=297.34 Aligned_cols=246 Identities=39% Similarity=0.651 Sum_probs=222.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..++.||+|++..++++.+.+..|+.||++|+..|++++.+|+|||+||||||.||+++|+.....|+.+-+++++..
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 56669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH---HHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT---QLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~---~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|.|.....++.+|..|..++|+|+||||||.+...+-+..+...+.+.. .||+++|++. .
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd-----------------s 321 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------------S 321 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc-----------------c
Confidence 9999999999999999999999999999999998886655555554444 4555555543 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
++.|-||.|||..+.+||+|.||||+++.|.|+.|++..+..||..+..++.+..++++..+......++|+||.++|.+
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|..+|.+.- +..++.+||.++.+.+.
T Consensus 402 aGllAlRer--------------------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 402 AGLLALRER--------------------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred HhHHHHHHH--------------------------------HhhccHHHHHHHHHHHH
Confidence 999987741 24678999998887653
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=323.13 Aligned_cols=234 Identities=41% Similarity=0.665 Sum_probs=222.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
..++.|.||+|+.++|+.+.+.+.+|.++|.+|...+++.+.|||||||||||||.||.++|...+..|+.+.+.++.+.
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
|.|++++.++.+|..|....|||||+||+|+++++++....+...|++++||++||+...+ .|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl----------------~G- 803 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL----------------DG- 803 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc----------------ce-
Confidence 9999999999999999999999999999999999999988899999999999999987652 22
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|.|+|||.+|+.|||||+||||+++.++.+.|+..+|.+|++.+........+.++..+|..|+||+|+||..++-.|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 045279 358 LAMKRIIDQRK 368 (702)
Q Consensus 358 ~a~~r~~~~~~ 368 (702)
.++.+++.+..
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99998887643
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=316.86 Aligned_cols=268 Identities=36% Similarity=0.628 Sum_probs=230.7
Q ss_pred CCccccc--cCCcccc-hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-eEEEEecccc
Q 045279 424 PNVKWED--VGGLDYL-RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-NFIHIKGPEL 499 (702)
Q Consensus 424 ~~~~~~~--i~g~~~~-k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l 499 (702)
|+-.|++ |||++.- -..+++++...+.-|+...++|.+..+|+|||||||||||.+||.+...++. .--.++++++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4555665 6788754 3445677888888999999999999999999999999999999999999854 4467899999
Q ss_pred cccCcCchHHHHHHHHHHHHh--------CCCeEEEEeCcchhhcccCCCC--chHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 500 LNKYVGESELAVRTLFSRART--------CSPCILFFDEVDALTTKRGKEG--GWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~--------~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
+++|||++|.++|.+|+.|.. ..-.||+|||||+++..|+... .++.+.++|+||..|||...-.+++||
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVI 373 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVI 373 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEE
Confidence 999999999999999998853 2335999999999999998653 457799999999999999999999999
Q ss_pred EecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC----CCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----PIDDSVDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 570 ~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
+.||+.+.||.|++|||||....++.+||+..|.+|++.+.+++ .++.++|+++|| ..|.+|||++|..+++.|
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA--~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELA--ALTKNFSGAELEGLVKSA 451 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHH--HHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999887764 456789999999 789999999999999999
Q ss_pred HHHHHHHHHhhcC----CCCCCCCccccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 045279 646 AMAALEDKLISSK----SSSDVTPFTIKLTHFEQALSKISPS--VSELQIQRYK 693 (702)
Q Consensus 646 ~~~a~~~~~~~~~----~~~~~~~~~i~~~d~~~al~~~~~~--~~~~~~~~~~ 693 (702)
...|+.+...... .........|+++||..||..++|+ +++++++.|.
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999886542 1223345689999999999999997 5666666554
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=287.54 Aligned_cols=229 Identities=38% Similarity=0.641 Sum_probs=209.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++..++.||+|+++.+++|.+.+..|+.|++.|..+|++++.++|+|||||||||.+||+.|...+..|..+.+..++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 36666899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
-|.|...+.++..|..|+...|+||||||+|.+..++-... +....+..-.||.++|+++.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss---------------- 307 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS---------------- 307 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC----------------
Confidence 99999999999999999999999999999999987764432 22234445567777776643
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...|-||++||+.+-+||+++|.||+++.|+||.|+.+.|.+|++.+.+++.+..++++.++++.|++|+|++++++|-
T Consensus 308 -~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 308 -DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred -ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 4559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|.+.+.++
T Consensus 387 EAGMiALRr 395 (424)
T KOG0652|consen 387 EAGMIALRR 395 (424)
T ss_pred hhhHHHHhc
Confidence 999999886
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=329.59 Aligned_cols=227 Identities=46% Similarity=0.709 Sum_probs=209.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
..+++|+|+.|.+++|++|.|.| ..+++|+.|..+|++.++|+||+||||||||.||+++|.+.++||+.+++++++..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 45689999999999999999876 88999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh----hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN----LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+.|....+++.+|..|+...|||+||||||.+...++. ..+......+++|+..||+...
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~---------------- 447 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET---------------- 447 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC----------------
Confidence 99999999999999999999999999999999988842 2345556778999999998653
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.+.|+|+|+||+++.+|++++||||||+.|.++.|+...|.+|++.+++...+. ...++..+|..|+||+|+||.++|
T Consensus 448 -~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 448 -SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred -CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 245999999999999999999999999999999999999999999999998885 566788899999999999999999
Q ss_pred HHHHHHHHHH
Q 045279 353 NKAGNLAMKR 362 (702)
Q Consensus 353 ~~a~~~a~~r 362 (702)
++|+..+.++
T Consensus 527 neaa~~a~r~ 536 (774)
T KOG0731|consen 527 NEAALLAARK 536 (774)
T ss_pred hHHHHHHHHh
Confidence 9999988775
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=319.55 Aligned_cols=253 Identities=39% Similarity=0.656 Sum_probs=216.1
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---------- 490 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------- 490 (702)
...|+++|++|+|++..++.+.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 4568899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEecccccccCcCchHHHHHHHHHHHHhC----CCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCc
Q 045279 491 FIHIKGPELLNKYVGESELAVRTLFSRARTC----SPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKG 565 (702)
Q Consensus 491 ~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~ 565 (702)
|+.+..+++.++|+|+++..++.+|..|+.. .|+||||||+|.++.+|+.+. +.....++++||..||+.....+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 6778889999999999999999999988763 699999999999998886543 34456789999999999988889
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-CCCC---------CCCCHHHHhhh--------
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-KPID---------DSVDLHTIAQS-------- 627 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-~~~~---------~~~~~~~la~~-------- 627 (702)
++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .++. ...++..++..
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~ 413 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYAT 413 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998875 3331 11122222211
Q ss_pred -------------------hcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 628 -------------------KFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 628 -------------------~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.+.+.+||++|+++|.+|...|+.+.+.. ....|+.+|+..|+..-
T Consensus 414 ~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 414 SEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred hcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------CCcCcCHHHHHHHHHHh
Confidence 12456899999999999999999998742 12379999999998754
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=316.57 Aligned_cols=247 Identities=47% Similarity=0.742 Sum_probs=226.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.+.|++++|++..++.+.+.+..++.+++.|..+|..++.|+||+||||||||++|+++|+.++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..|+|.+...++.+|..++...|+||||||+|.+...+.... .....+.+.+++.++++.....+++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999998999999999999987775432 23446677888888998877788999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++||||||..|+|+.|+.++|.+|++.++.+..+..+.+++.++ ..+.||+|+||+++|++|++.|+++...
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la--~~t~g~sg~dl~~l~~~A~~~a~~~~~~-- 349 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA--KMTEGASGADLKAICTEAGMFAIREERD-- 349 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999988888788999999 6789999999999999999999887532
Q ss_pred CCCCCCCCccccHHHHHHHHhhc
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.|+.+||.+|+.++
T Consensus 350 ---------~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 350 ---------YVTMDDFIKAVEKV 363 (364)
T ss_pred ---------ccCHHHHHHHHHHh
Confidence 79999999999875
|
Many proteins may score above the trusted cutoff because an internal |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=314.40 Aligned_cols=247 Identities=38% Similarity=0.607 Sum_probs=221.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|+||+|++.+|+++.+.+..|+.+|+++..+|+.++.++||+||||||||++|+++|+.++.+|+.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|.....++.+|..|....|+||||||+|.++..+... .+....+++..++..+++...
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~---------------- 281 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ---------------- 281 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC----------------
Confidence 9999999999999999999999999999999998765322 123345677788888876432
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+++||+|||.++.+||+++|+|||+..|+|+.|+.++|..||+.++.+..+..+.++..++..++||+|+||.++|.
T Consensus 282 -~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 282 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred -CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 2358999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
+|...+.++. ...++.+||.+++..+.
T Consensus 361 eA~~~A~r~~--------------------------------~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 361 EAGMQAVRKN--------------------------------RYVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHH
Confidence 9998887641 13688999999988754
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=284.56 Aligned_cols=228 Identities=36% Similarity=0.623 Sum_probs=210.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++.+++.|++|-.+.++.+++.+..|+.+|+.|..+|+.|+.+||+|||||||||..|+++|++.+..|+.+-+++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|+|+....++++|+.|+....||+|+||||.+.+.+-.. .+....+..-+|+.++|++.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd----------------- 312 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD----------------- 312 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC-----------------
Confidence 9999999999999999999999999999999998876432 22333455556777777764
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+|++-|+.+||+|+.+||+|+||||+++.++|..|+.+-|.+||+.+.+.+.++.+..+..+++.+++-+|++|+.+|.
T Consensus 313 prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 313 PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
+|.+.+++
T Consensus 393 eagmfair 400 (435)
T KOG0729|consen 393 EAGMFAIR 400 (435)
T ss_pred HhhHHHHH
Confidence 99998866
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=326.71 Aligned_cols=243 Identities=42% Similarity=0.703 Sum_probs=221.8
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.+.|++++|++++++.+.+.+ ..++.++.|..+|...++|+||+||||||||++|+++|.+++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4578999999999999998855 558889999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
+|.+...++.+|..|+...||||||||+|.+...|+.+ .+......+++||.+|+++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99988999999999999999999999999999877543 344567889999999999988889999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++||||||..|.|++|+.++|..||+.++++.....+.++..+| ..+.||+|+||+++|++|+..|.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA--~~t~G~sgaDL~~lvneAal~a~r~~~------ 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA--RRTPGFSGADLANLLNEAAILTARRKK------ 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 999999999999999999999999999999998877888899999 678999999999999999988876643
Q ss_pred CCCCCccccHHHHHHHHhhc
Q 045279 661 SDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~ 680 (702)
..|+.+||+.|+.++
T Consensus 409 -----~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 -----ATITMKEIDTAIDRV 423 (638)
T ss_pred -----CCcCHHHHHHHHHHH
Confidence 279999999999987
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=276.52 Aligned_cols=220 Identities=34% Similarity=0.524 Sum_probs=193.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+|++|++++|+... .+...+.+|+.|..+ .+++||||||||||||++|+++|++.+.|++.+++..+...
T Consensus 115 ~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 45669999999999999887 565778888876655 57899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
++|....+++.+|+.|...+|||+||||+|.+.-++.-. ..+....+++.||+.||++.. ..
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e-----------------ne 253 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE-----------------NE 253 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc-----------------CC
Confidence 999999999999999999999999999999998776432 244556789999999998754 22
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHH-HHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAA-LANKA 355 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~-l~~~a 355 (702)
.|+.||+||.++.|||++++ ||...|+|..|+.++|.+|+..+.+.+.+.-..++..++..+.||+|+||.. +++.|
T Consensus 254 GVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred ceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHH
Confidence 39999999999999999999 9999999999999999999999999999998899999999999999999864 44555
Q ss_pred HHHHH
Q 045279 356 GNLAM 360 (702)
Q Consensus 356 ~~~a~ 360 (702)
...|+
T Consensus 332 Lh~Ai 336 (368)
T COG1223 332 LHRAI 336 (368)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=306.79 Aligned_cols=254 Identities=41% Similarity=0.660 Sum_probs=221.7
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++|+|++++++++.+.+..|+.+|+.+..+|+.++.++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
...|.|..+..++.+|+.+....|+||||||+|.+...+.... +....+.+..++..+++...
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-------------- 267 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-------------- 267 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--------------
Confidence 9999999999999999999999999999999999987654432 12223445556665554321
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++++||+|||.++.+|++++|||||+..|.|+.|+.++|.+||+.++++..+..+.++..++..|.||+++|+..+
T Consensus 268 ---~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 268 ---RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred ---CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 34599999999999999999999999999999999999999999999998888777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR 417 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~ 417 (702)
|++|...++++. ...|+.+||..|+..+++....
T Consensus 345 ~~eA~~~a~~~~--------------------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 345 CTEAGMFAIRDD--------------------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHcC--------------------------------CCCcCHHHHHHHHHHHhccccc
Confidence 999998887641 1358899999999988775543
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=330.26 Aligned_cols=270 Identities=43% Similarity=0.667 Sum_probs=234.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++|+|++.+|+.|.+.+.+|+.+++++..+|++++.++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.|+++..++.+|..|....|+||||||||.+.+.++.. ......+++++|+..|++...
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~----------------- 587 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE----------------- 587 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-----------------
Confidence 99999999999999999999999999999999999877543 234567889999999997532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
..+++||+|||.++.+||+++|||||+..|+++.|+.++|.+||+.+.++..+..+.++..++..++||+|+||..+|++
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~ 667 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCRE 667 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|...++++......... +. ...........++.+||..+++.++|+..
T Consensus 668 A~~~a~~~~~~~~~~~~----~~----------~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 668 AAMAALRESIGSPAKEK----LE----------VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHHHhhhccchh----hh----------cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 99999888654321000 00 00001112357999999999998887653
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=301.82 Aligned_cols=247 Identities=39% Similarity=0.639 Sum_probs=218.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+..+|+||+|++.+++++.+.+..|+.+|+++..+|+.++.++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|.....++.+|..|....|+||||||||.+...+.... .....+.+..++..++++..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~---------------- 319 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS---------------- 319 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc----------------
Confidence 99999999999999999999999999999999987654322 12234555667777776432
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++.||+|||.++.+|++++|+|||+..|+|+.|+.++|.+||+.++.+..+..+.++..++..+.||+++|+.++|.
T Consensus 320 -~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 320 -RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred -cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
+|+..|.++- ...|+.+||..|+..+.
T Consensus 399 eA~~~Alr~~--------------------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 399 EAGLLALRER--------------------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHhc--------------------------------CCccCHHHHHHHHHHHH
Confidence 9999887641 13688999999988764
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=314.42 Aligned_cols=253 Identities=45% Similarity=0.694 Sum_probs=230.9
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++++|++.+++.+.+.+.+++.+++.+...+++++.++||+||||||||++|+++|.+++.+|+.+..+++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 44567889999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.+.|.|++++.++.+|..|+...||||||||+|++.+.++...+....+++++|+..|++...
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~----------------- 375 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK----------------- 375 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc-----------------
Confidence 999999999999999999999999999999999999998876666668999999999987654
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc--CCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV--EGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~--~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+|+||+|||.++.+|++++|+|||+..++|++|+.++|.+||+.+++.... ..+.++..+++.+.||+++|+..+|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999986554 4677899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|...+.+... ...++.+||..+++...|+.
T Consensus 456 ~ea~~~~~~~~~-------------------------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 456 REAALEALREAR-------------------------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHHHHhc-------------------------------cCCccHHHHHHHHHhcCCCC
Confidence 999998877643 13688999999999876653
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=332.13 Aligned_cols=211 Identities=18% Similarity=0.270 Sum_probs=179.2
Q ss_pred hHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC----------cC----------------
Q 045279 452 PEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY----------VG---------------- 505 (702)
Q Consensus 452 ~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~----------~g---------------- 505 (702)
.....++|..+|+|+||+||||||||++||++|.+++.||+.+.++++++.| +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455788999999999999999999999999999999999999999998765 12
Q ss_pred ---------------chHH--HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---CCCc
Q 045279 506 ---------------ESEL--AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---KRKG 565 (702)
Q Consensus 506 ---------------~~~~--~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---~~~~ 565 (702)
.++. .++.+|+.|++.+||||||||||+++.+... ...+++||.+|++.. ...+
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc------eehHHHHHHHhccccccCCCCC
Confidence 2222 3788999999999999999999999865211 224789999999763 4568
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHH
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDS-VDLHTIAQSKFCENLSGADLAAMM 642 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~ 642 (702)
|+||||||+|+.||||++||||||+.|+++.|+..+|.+++..++. +..+..+ ++++.+| ..|.||+||||.++|
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA--~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFG--SITMGSNARDLVALT 1850 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHH--HhCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998886543 3444433 5788999 679999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 643 NEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 643 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
++|+..|+++... .|+.+++..|+.++.
T Consensus 1851 NEAaliAirq~ks-----------~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1851 NEALSISITQKKS-----------IIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHcCCC-----------ccCHHHHHHHHHHHH
Confidence 9999999998643 799999999999764
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=320.58 Aligned_cols=264 Identities=37% Similarity=0.601 Sum_probs=231.9
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEe
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIK 495 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~ 495 (702)
.....+.|+++||++.++..+++.+..++.|++.|..+++.||+|+||+||||||||..|+++|..+ +..|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 3345789999999999999999999999999999999999999999999999999999999999987 56788889
Q ss_pred cccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 496 GPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 496 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+++.+++|+|+.++.++.+|+.|+...|+|+||||||.|++.|+......-..++.+||..|+|...+..|+||+|||++
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999999997776667788999999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+|||+.||||||+.++||+|+.+.|.+|+..+-++..-.. ..-+..+| ..+.||.|+||+.+|-+|++.++++..
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la--~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLA--EETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHH--HhccccchHHHHHHHHHHhhhhhcccc
Confidence 999999999999999999999999999999998877654222 22346677 668899999999999999999999864
Q ss_pred hhc-----CCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 655 ISS-----KSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 655 ~~~-----~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
-.. ...-+.....|...||..|+.++.|+...
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 211 11122233358889999999999887655
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=306.86 Aligned_cols=227 Identities=46% Similarity=0.693 Sum_probs=211.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|.|+.|.+++|+++.+.| .+++.|..|..+|.+-++++||+||||||||+||+++|.+.++||+.+++++++.-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45689999999999999999766 88999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
++|-...+++.+|.+|++++|||+||||||.+...++.. .++...+.+++||..||++..
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~----------------- 285 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG----------------- 285 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-----------------
Confidence 999999999999999999999999999999999877532 455667789999999998652
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
...|+||++||+|+-+||||+|||||++.|.++.|+...|.+|++.+.++..+...+++..+|+.|+||+++|+.+++++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHH
Confidence 22399999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 355 AGNLAMKR 362 (702)
Q Consensus 355 a~~~a~~r 362 (702)
|+..+.++
T Consensus 366 Aal~aar~ 373 (596)
T COG0465 366 AALLAARR 373 (596)
T ss_pred HHHHHHHh
Confidence 99998876
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.23 Aligned_cols=245 Identities=39% Similarity=0.673 Sum_probs=222.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
...|.++.|.+..+..+.+.+.. +..+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45789999999999999886655 56777788888888999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
|.+...++.+|..|+...||||||||+|.+...|+.. ......+++++||.+||++.....++||+|||+|+.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999999888653 2345578999999999999888999999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
++||||||+.|+|++|+.++|.+||+.++++.++..+.++..++ ..+.||+|+||.++|++|+..|+++..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la--~~t~G~sgadl~~l~~eAa~~a~r~~~------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHcCC-------
Confidence 99999999999999999999999999999999988889999999 678999999999999999999887643
Q ss_pred CCCCccccHHHHHHHHhhcCCC
Q 045279 662 DVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 662 ~~~~~~i~~~d~~~al~~~~~~ 683 (702)
..|++.||+.|+.++.+.
T Consensus 378 ----~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 ----RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----CcccHHHHHHHHHHHhcc
Confidence 279999999999877543
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=301.26 Aligned_cols=242 Identities=26% Similarity=0.422 Sum_probs=207.9
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+..+|++|+|++.+|+.+.+..... .......|+++++++||+||||||||++|+++|++++.+++.++++.+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4568999999999999998755321 2223456889999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh-hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN-LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
.|+++..++.+|..|....||||||||||.++...+. ...+...+++..++..|++. ...
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------------~~~ 360 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------------KSP 360 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------------CCc
Confidence 9999999999999999999999999999999875432 23456678888999888742 234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC--CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE--GSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~--~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
|+||||||.++.+||+++|+|||+..++++.|+.++|.+||+.++++.... .+.++..++..|.||+|+||.++|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886533 367899999999999999999999998
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
...+... ...++.+||..++..+.|..
T Consensus 441 ~~~A~~~---------------------------------~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 441 MYIAFYE---------------------------------KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHc---------------------------------CCCcCHHHHHHHHHhcCCCc
Confidence 8766431 12578999999999988865
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=270.28 Aligned_cols=249 Identities=19% Similarity=0.251 Sum_probs=186.1
Q ss_pred ccccc-CCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC
Q 045279 427 KWEDV-GGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505 (702)
Q Consensus 427 ~~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g 505 (702)
.|+.+ +|+.-.+..+...+....+.. ....+.++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 666666665554443322221 123678999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHH-HHHHHhhhCC------------CCCCcEE
Q 045279 506 ESELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLL-NQLLIELDGA------------DKRKGVF 567 (702)
Q Consensus 506 ~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~-~~ll~~l~~~------------~~~~~~~ 567 (702)
++++.+|++|..|.. ..||||||||||+++++|+........+++ .+||++||+. ....+++
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999875 469999999999999999755444445555 7999998863 3456799
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCC--CCCHHH--------
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCE--NLSGAD-------- 637 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~--~~sg~d-------- 637 (702)
||+|||+|+.|||+++||||||+.+ +.|+.++|..|++.++++..+. ..++..|+...-.. .|.|+-
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999865 6899999999999999998776 47777777431111 245533
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CCCCCCCccccHHHHHHHHhhc
Q 045279 638 LAAMMNEAAMAALEDKLISSK-SSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~~~~~~-~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++..|.+.....+...+-... ......++.+|.+.+.++=..+
T Consensus 348 v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l 391 (413)
T PLN00020 348 VRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNML 391 (413)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 444555555444444433221 2334455677888777765444
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=299.53 Aligned_cols=245 Identities=44% Similarity=0.670 Sum_probs=214.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|+++.+.+. .+.+++.+...|...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 457799999999999999997664 5888888888899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....++.+|..+....|+||||||||.+...++.. ......+.++.|+..|+++..
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~----------------- 190 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT----------------- 190 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-----------------
Confidence 999999999999999999999999999999999776542 233446778889998886532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+.++||+|||.++.+||+++|||||+..|+++.|+.++|.+|++.+++........++..++..+.||+++||..+|++
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~e 270 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNE 270 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999988776667789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|...+.++. ...|+.+|+..++....
T Consensus 271 A~~~a~~~~--------------------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 271 AALLAARKN--------------------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHcC--------------------------------CCCCCHHHHHHHHHHHh
Confidence 877654420 13578899999887654
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=284.50 Aligned_cols=229 Identities=43% Similarity=0.715 Sum_probs=202.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++++++++.+.+..|+.+++.+..+|+.++.++||+||||||||++|+++|+.++.+|+.+.++.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.|.....++.+|..+....|+||||||+|.+...+.... +....+.+..++..+++...
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~---------------- 258 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP---------------- 258 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC----------------
Confidence 89999888899999999988999999999999986654321 12223445556666654321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++.||+|||.++.+|++++|+|||+..|.|+.|+.++|.+||+.++....+....++..+++.+.||+++|+..+|+
T Consensus 259 -~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 259 -RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred -CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999998888777788999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|...++++
T Consensus 338 ~A~~~a~~~ 346 (364)
T TIGR01242 338 EAGMFAIRE 346 (364)
T ss_pred HHHHHHHHh
Confidence 999888764
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=285.49 Aligned_cols=191 Identities=38% Similarity=0.672 Sum_probs=169.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------e
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP----------F 186 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----------~ 186 (702)
..+.++|++|+|++.+++++.+.+..|+.+|+++...|+++++++|||||||||||++|+++|+.++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 356789999999999999999999999999999999999999999999999999999999999998644 5
Q ss_pred EEEechhhhcccccccHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCC
Q 045279 187 YKISATEVVSGVSGASEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQP 261 (702)
Q Consensus 187 ~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~ 261 (702)
+.+.++++...|.|+++..++.+|+.+... .|+||||||+|.++..++.. .++...+++.+|+..|++...
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~---- 330 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES---- 330 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc----
Confidence 667778888899999999999999998763 69999999999999776543 345567888999999987542
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 262 GDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.++++||+|||+++.|||+++|||||+..|+|+.|+.++|.+||+.++..
T Consensus 331 -------------~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 -------------LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred -------------CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 24599999999999999999999999999999999999999999988764
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=280.33 Aligned_cols=271 Identities=36% Similarity=0.544 Sum_probs=229.0
Q ss_pred CcccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 111 GAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 111 ~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
..++....+.+.|+|+.|++.+++.+.+.+++|+.++.+|..+ ..+..++||.||||+|||+|+++||.+.+..|+.++
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 3555556778899999999999999999999999999997743 346689999999999999999999999999999999
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
++.+.+.|.|+.+..++.+|.-|+..+|+|+||||||.++..+.....+..+++..+++.++++...
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s------------- 285 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS------------- 285 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC-------------
Confidence 9999999999999999999999999999999999999999999777788889999999988886432
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc-cCCcccHHHHHhhCCCCCHHHHH
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR-VEGSFDLVKIARSTPGFVGADLA 349 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~-~~~~~~~~~la~~t~g~~~~dl~ 349 (702)
....+|+||||||.|+++|.+++| ||..++++|.|+.+.|..+|..++.... .....++..+++.|+||++.|+.
T Consensus 286 --~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 286 --APDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred --CCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 233479999999999999999999 9999999999999999999999998773 23346799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCc
Q 045279 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE 418 (702)
Q Consensus 350 ~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~ 418 (702)
++|.+|.+-..+....... +.. -.......++..||..+...+.+.....
T Consensus 362 ~l~kea~~~p~r~~~~~~~--~~~-----------------~~~~~~r~i~~~df~~a~~~i~~~~s~~ 411 (428)
T KOG0740|consen 362 ALCKEAAMGPLRELGGTTD--LEF-----------------IDADKIRPITYPDFKNAFKNIKPSVSLE 411 (428)
T ss_pred HHHHHhhcCchhhcccchh--hhh-----------------cchhccCCCCcchHHHHHHhhccccCcc
Confidence 9999998776655433200 000 0001225688899999999888765443
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=295.15 Aligned_cols=244 Identities=44% Similarity=0.656 Sum_probs=211.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|+|++|++++++++.+.+ ..+..++.+..+|...+.++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 44679999999999999998765 56888888888999999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh---hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN---LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....+..+|..|....|+||||||||.+...++. ..+....+.+..|+..++++..
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~----------------- 318 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG----------------- 318 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-----------------
Confidence 88888888999999999999999999999999866532 1233445678888888886532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
...|+||+|||.++.+|++++|||||+..+.++.|+.++|.+||+.+++......+.++..+++.+.||+++||.++|++
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 23499999999999999999999999999999999999999999999988776667789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|+..+.++. ...++.+||..++..+
T Consensus 399 Aal~a~r~~--------------------------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 399 AAILTARRK--------------------------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHhC--------------------------------CCCcCHHHHHHHHHHH
Confidence 987765431 1357888999888764
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=255.01 Aligned_cols=227 Identities=39% Similarity=0.640 Sum_probs=201.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|++++|+-..+.++.+.+..|+.+|.++.++|+++|.+++||||||||||.+|+++|..+++.|+.+..+.+.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHH---HHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQ---LMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~---ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|++...+++.|..|....|||||+||||.+.+.+........+.+..+ |+.+|+++..
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~----------------- 268 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT----------------- 268 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-----------------
Confidence 99999999999999999999999999999999987744322233334444 4455554432
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
-++|-+|.|||+|+.|+|+|+||||+++.+.+|.|.+..|+.|++.+.......+..+...+.+..+||++.|+++.|.+
T Consensus 269 l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 269 LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTE 348 (388)
T ss_pred cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccc
Confidence 34589999999999999999999999999999999999999999999888888888889999999999999999999999
Q ss_pred HHHHHHH
Q 045279 355 AGNLAMK 361 (702)
Q Consensus 355 a~~~a~~ 361 (702)
|...+.+
T Consensus 349 ag~Fa~~ 355 (388)
T KOG0651|consen 349 AGMFAIP 355 (388)
T ss_pred ccccccc
Confidence 8766544
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=279.41 Aligned_cols=245 Identities=41% Similarity=0.647 Sum_probs=211.6
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
...+|+++.|.+.+++++.+.+.. +..+..+..++...+.+++|+||||||||+++++++++++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 355899999999999999987654 5566666667778888999999999999999999999999999999999999989
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.|.....++.+|..+....|+||||||+|.+...++.. ......+.++.|+..|+++.. .
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-----------------~ 288 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-----------------N 288 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-----------------C
Confidence 99999999999999999999999999999998766532 233446788889999887542 2
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..++||+|||.++.+||+++|||||++.|.++.|+.++|.+||+.++++..+..+.++..+++.+.||+++||.++|++|
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999998887788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
...+.+. ....++..|+..+...+.+
T Consensus 369 a~~a~r~--------------------------------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 369 ALFAARG--------------------------------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHc--------------------------------CCCcccHHHHHHHHHHHhc
Confidence 9887653 1135788899888876543
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-29 Score=290.61 Aligned_cols=195 Identities=23% Similarity=0.330 Sum_probs=159.2
Q ss_pred CcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc----------cc-----------------
Q 045279 148 QLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV----------SG----------------- 200 (702)
Q Consensus 148 ~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~----------~g----------------- 200 (702)
.....+|+.+++||||+||||||||+||+++|.+.++||+.++++++...+ .|
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 344677899999999999999999999999999999999999999998653 11
Q ss_pred --------------ccH--HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 201 --------------ASE--ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 201 --------------~~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
... ..++.+|+.|+..+||||||||||.+..+.. ....+.+|+..|++...
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~------- 1766 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCE------- 1766 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccc-------
Confidence 111 2378899999999999999999999986521 11236778888875321
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh--cCcccCCc-ccHHHHHhhCC
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT--RNLRVEGS-FDLVKIARSTP 341 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~--~~~~~~~~-~~~~~la~~t~ 341 (702)
......|+||||||.|+.||||++|||||++.|.++.|+..+|.+++..++ ++..+... .++..+|+.|+
T Consensus 1767 -------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~ 1839 (2281)
T CHL00206 1767 -------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITM 1839 (2281)
T ss_pred -------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCC
Confidence 001234999999999999999999999999999999999999999987654 33333332 47899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 045279 342 GFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 342 g~~~~dl~~l~~~a~~~a~~r 362 (702)
||+|+||.++|++|+..++++
T Consensus 1840 GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999988775
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=246.97 Aligned_cols=231 Identities=22% Similarity=0.264 Sum_probs=172.7
Q ss_pred CCcccc-cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 121 PRFQDL-GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 121 ~~~~~i-~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
.+|+++ +|+--.+.-+.+.+....++ ....++++++.+++||||||||||++|+++|++++.+++.+++.++.++|.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 467888 55444444333322221111 111357899999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHh-----hCCceEEechhhHhhhcchhhhHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYR-----TAPSIVFIDEIDAIASKRENLQREMERRIV-TQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~-~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
|++++.++.+|..|.. .+||||||||||.+++.++..+.....+++ .+|+.++|+....-..|... ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~-----~~~ 264 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWR-----EKE 264 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccc-----ccc
Confidence 9999999999999975 469999999999999988755555555565 79999998643211111100 001
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCC----CCHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG----FVGADLA 349 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g----~~~~dl~ 349 (702)
....|.||+|||.++.|||+|+|+|||+..+ ..|+.++|.+||+.+++...+. ..++..++..++| |.|+--.
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlra 341 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRA 341 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHH
Confidence 2345999999999999999999999999864 6899999999999999988765 4678888888877 4555444
Q ss_pred HHHHHHHHHHHH
Q 045279 350 ALANKAGNLAMK 361 (702)
Q Consensus 350 ~l~~~a~~~a~~ 361 (702)
.+.+++++..+.
T Consensus 342 r~yd~~v~~~i~ 353 (413)
T PLN00020 342 RVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=245.30 Aligned_cols=470 Identities=21% Similarity=0.261 Sum_probs=284.3
Q ss_pred CcccccCH-HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 122 RFQDLGGM-ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 122 ~~~~i~G~-~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
.++.++|. ++.++++++.+ ..+.++|.+|+|.||+|||.++..+|+.. +..++.++
T Consensus 184 kldPvigr~deeirRvi~iL-------------~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~ 250 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEIL-------------SRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALD 250 (898)
T ss_pred CCCCccCCchHHHHHHHHHH-------------hccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEE
Confidence 47788887 88888888776 45566899999999999999999999986 35677888
Q ss_pred chhhhcc--cccccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVSG--VSGASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~~--~~g~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
...+..+ +.|+.+.+++.+...+. .+...||||||+|.+.+...+....... .+|..+-.
T Consensus 251 ~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~----nlLkp~L~------------- 313 (898)
T KOG1051|consen 251 FGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAA----NLLKPLLA------------- 313 (898)
T ss_pred hhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHH----HhhHHHHh-------------
Confidence 8777666 67889999999999888 4466799999999999876552222222 23333332
Q ss_pred CCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHH-------
Q 045279 268 SDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVK------- 335 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~------- 335 (702)
.|.+.+||||+.-+ .-+|++.+ ||+ .+.++.|+.++...||......+..++...+..
T Consensus 314 -------rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~ 383 (898)
T KOG1051|consen 314 -------RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAA 383 (898)
T ss_pred -------cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCccccccccccc
Confidence 23489999887422 67999999 994 588999999998999988877765554432211
Q ss_pred -HH--hhCCCCCHHHHHHHHHHHHHHHHH------HHHHh----------hhhccccCc---cccccCcc----------
Q 045279 336 -IA--RSTPGFVGADLAALANKAGNLAMK------RIIDQ----------RKSELSGNS---IAEQHSDD---------- 383 (702)
Q Consensus 336 -la--~~t~g~~~~dl~~l~~~a~~~a~~------r~~~~----------~~~~~~~~~---~~~~~~~~---------- 383 (702)
+. ..+..|-+.-...++++|+..... ..+.. ....+.... +.......
T Consensus 384 ~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~ 463 (898)
T KOG1051|consen 384 QLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQ 463 (898)
T ss_pred chhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 11 223334444444455555433211 00000 000000000 00000000
Q ss_pred cccCCCChh--hhhhh-----cc---------------------------------------cHhHHHHHHhccCCCC--
Q 045279 384 WWRQPWLPE--EMERL-----TI---------------------------------------TMTDFEEATKMVQPSS-- 415 (702)
Q Consensus 384 ~~~~~~~~~--~~~~~-----~i---------------------------------------~~~d~~~~l~~~~p~~-- 415 (702)
.....+..+ ..+.+ .+ +..++......|....
T Consensus 464 ~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~ 543 (898)
T KOG1051|consen 464 PLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVD 543 (898)
T ss_pred cchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchh
Confidence 000000000 00000 00 0011111111111000
Q ss_pred cC-----ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC---CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 416 RR-----EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV---DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 416 ~~-----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.. +.+..+....-+.|.|++++...+.++|... +.|. .+...++|.||.|+|||.+|+++|..+
T Consensus 544 ~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~ 615 (898)
T KOG1051|consen 544 RLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV 615 (898)
T ss_pred hhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH
Confidence 00 0000011112244677777777666666554 2222 356678999999999999999999987
Q ss_pred ---CCeEEEEeccccc---------ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 488 ---GANFIHIKGPELL---------NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 488 ---~~~~~~i~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.-.|+.++++++. ..|+|..+.. ++.+..++.+++||||||||... ..+++.|++
T Consensus 616 Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq 682 (898)
T KOG1051|consen 616 FGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQ 682 (898)
T ss_pred cCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHH
Confidence 5689999999632 2488887766 78888899999999999999999 889999999
Q ss_pred hhhCCC---------CCCcEEEEEecCCC----------------------------------------CccCccccCCC
Q 045279 556 ELDGAD---------KRKGVFVIGATNRP----------------------------------------DVMDRAVLRPG 586 (702)
Q Consensus 556 ~l~~~~---------~~~~~~vI~atn~~----------------------------------------~~ld~a~~r~g 586 (702)
.+|... ...+++||||+|.- ..+.|.|++
T Consensus 683 ~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n-- 760 (898)
T KOG1051|consen 683 LLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN-- 760 (898)
T ss_pred HHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhc--
Confidence 998732 34679999998731 123344544
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CC---------CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 587 RFGKLLYVPLPTPDERGLILEALARKKPIDD-SV---------DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 587 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~---------~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+|.++.|.+.+.++..+|....+....... +. -.+.++...+...|..+-|++.|++-....+....
T Consensus 761 rid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051|consen 761 RIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred ccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhh
Confidence 8899999999998877777766554321110 00 01122211122233446666777666666555554
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=216.05 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=177.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGP 497 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~ 497 (702)
+++++|++.+|+.+.+.+.+ +.....+.+.|..+ +.+++|+||||||||++|+++|..+ ..+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999997766 44556667777654 3458999999999999999999975 2368999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC-
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD- 576 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~- 576 (702)
++.+.|+|+++..++.+|++| .++||||||+|.+...++ ......++++.|+..|+.. ..+++||++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 999999999988888888887 458999999999975432 2334578899999999854 35678888876422
Q ss_pred ----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HH----HHhhhhcCCCCC-HHHHHHHHHHHH
Q 045279 577 ----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LH----TIAQSKFCENLS-GADLAAMMNEAA 646 (702)
Q Consensus 577 ----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~----~la~~~~~~~~s-g~dl~~~~~~a~ 646 (702)
.++|++.+ ||+.+|+|++|+.+++.+|+..++++.....+.+ .. .+........|+ ++++++++..|+
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34689988 9999999999999999999999998765443332 22 222222234666 799999999999
Q ss_pred HHHHHHHHhhcCCC-CCCCCccccHHHHHH
Q 045279 647 MAALEDKLISSKSS-SDVTPFTIKLTHFEQ 675 (702)
Q Consensus 647 ~~a~~~~~~~~~~~-~~~~~~~i~~~d~~~ 675 (702)
.....+........ +...-.+|+.+|+.+
T Consensus 252 ~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGRVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCCCCCHHHHhCCCHHHHhH
Confidence 88887776532111 122234566666644
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=208.13 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=176.1
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHhC-------CeEEEEecccc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIHIKGPEL 499 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~i~~~~l 499 (702)
+++|++.+|+.+.+.+.+ +..+..+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999997766 66777777888764 45899999999999999999998762 37999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--CC-
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR--PD- 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~--~~- 576 (702)
.+.|+|+++..++.+|+.| .++||||||++.+.+.++ ......++++.|+..|+.. ..+++||++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 9999999988888999887 448999999999975432 2234478889999999853 356788888764 23
Q ss_pred --ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhh----hcCCCC-CHHHHHHHHHHHHHH
Q 045279 577 --VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQS----KFCENL-SGADLAAMMNEAAMA 648 (702)
Q Consensus 577 --~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~----~~~~~~-sg~dl~~~~~~a~~~ 648 (702)
.++|++.+ ||+..|.||+|+.+++..|++.++++.....+.+ ++.+... ...+.+ +++++++++..|+..
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 35899999 9999999999999999999999999865432222 2222211 111233 469999999999887
Q ss_pred HHHHHHhhcC-CCCCCCCccccHHHHHHH
Q 045279 649 ALEDKLISSK-SSSDVTPFTIKLTHFEQA 676 (702)
Q Consensus 649 a~~~~~~~~~-~~~~~~~~~i~~~d~~~a 676 (702)
...+...... ......-.+|+.+|+.++
T Consensus 253 ~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 253 QANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 7766654221 111223346667776543
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=207.24 Aligned_cols=217 Identities=18% Similarity=0.278 Sum_probs=164.9
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCC---CceEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEech
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRP---MAGILLYGPPGCGKTKLAHAIANETG-------VPFYKISAT 192 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~i~~~ 192 (702)
+.+|+|++++|++|.+.+.+ +..++++...|+.+ +.++||+||||||||++|+++|+.+. .+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35899999999999987755 44455555666643 45699999999999999999998762 368999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++...+.|.++..+..+|+.+. ++||||||+|.+..... ...........|+..|+..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~----------------- 158 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ----------------- 158 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC-----------------
Confidence 9999999988888888888874 35999999999865322 1234567778888888752
Q ss_pred CCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-H---HH-HHhh--C
Q 045279 273 SKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-L---VK-IARS--T 340 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~---~~-la~~--t 340 (702)
.++++||++++... .++|++++ ||+.+|.|++|+.+++.+|+..+++......... . .. +.+. .
T Consensus 159 --~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~ 234 (287)
T CHL00181 159 --RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQ 234 (287)
T ss_pred --CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCC
Confidence 24488888886522 45799999 9999999999999999999999987654332222 1 11 2221 2
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHh
Q 045279 341 PGF-VGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 341 ~g~-~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
+.| ++++++++++.+......|+...
T Consensus 235 ~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 235 PLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 344 48999999999999998888765
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-22 Score=201.66 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=162.1
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~ 496 (702)
.+++++|++.+|+.+.+.+.+.... ....+.|..+ ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3577999999999999987766443 3333455543 4578999999999999999999875 347889999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
+++.+.|+|+++..++.+|..+. ++||||||+|.|... .......+.++.|+..|+.. ..++++|++++..+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 99999999999999999998874 589999999999732 11223467888999999864 34456666654322
Q ss_pred -----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhh------cCC-CCCHHHHHHHHH
Q 045279 577 -----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSK------FCE-NLSGADLAAMMN 643 (702)
Q Consensus 577 -----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~------~~~-~~sg~dl~~~~~ 643 (702)
.++|++.+ ||+..|.||.|+.+++..|++.++.......+.+ ++.++... ... .-+++.+++++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 47889988 9999999999999999999999998765543333 33332110 011 235688999999
Q ss_pred HHHHHHHHHHHh
Q 045279 644 EAAMAALEDKLI 655 (702)
Q Consensus 644 ~a~~~a~~~~~~ 655 (702)
.|......+...
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 888777666553
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-22 Score=203.74 Aligned_cols=217 Identities=18% Similarity=0.282 Sum_probs=166.3
Q ss_pred cc-cccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Q 045279 123 FQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANETG-------VPFYKISA 191 (702)
Q Consensus 123 ~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~i~~ 191 (702)
++ +++|++++|++|.+.+.+ +..++.+...|+. ++.+++|+||||||||++|+++|+.+. .+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 799999999999987755 6566666677766 355899999999999999999988773 37999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.++...+.|.+...+..+|+.+.. ++|||||++.+..... .......+...|+..|+..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~---------------- 157 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ---------------- 157 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC----------------
Confidence 999988999888888888988744 5999999999864322 1234456677888888742
Q ss_pred CCCCCeEEEEEecCCC--C---CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh------
Q 045279 272 DSKPGYVLVIGATNRP--D---AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS------ 339 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~--~---~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~------ 339 (702)
.++++||++++.. + .++|++++ ||...|.||.|+.+++.+|+..++++........ ...+...
T Consensus 158 ---~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~ 232 (284)
T TIGR02880 158 ---RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT 232 (284)
T ss_pred ---CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC
Confidence 2458888887653 2 46899999 9999999999999999999999988764332222 2222221
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 340 TPG-FVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 340 t~g-~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
.+. -+++.+++++..+......|+..+
T Consensus 233 ~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 233 QPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 122 368999999999999888888754
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=199.12 Aligned_cols=217 Identities=18% Similarity=0.259 Sum_probs=161.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANET-------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~~i~~ 191 (702)
.+++++|++++|++|.+.+.++... ..+...|.. ...+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4789999999999999887665433 222233443 34689999999999999999999875 247889999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|+....+..+|..+. ++||||||+|.|....+ .......+..|+..|+..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~---------------- 140 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDN---------------- 140 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhcc----------------
Confidence 99999999999999999998874 45999999999974221 223455677788888753
Q ss_pred CCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHh-------
Q 045279 272 DSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIAR------- 338 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~------- 338 (702)
++++++|++++..+ .++|++++ ||+..+.|+.|+.+++.+|++.++.........+ +..++.
T Consensus 141 ---~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 215 (261)
T TIGR02881 141 ---RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQ 215 (261)
T ss_pred ---CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHh
Confidence 23467776664432 47899999 9988999999999999999999887654433222 222211
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 339 --STPGFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 339 --~t~g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
....-+++.+.+++..|......|++..
T Consensus 216 ~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 216 LSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 1123478999999999988888877654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=176.34 Aligned_cols=130 Identities=45% Similarity=0.770 Sum_probs=119.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCch
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGW 544 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~ 544 (702)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.+...++.+|..+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999888556667
Q ss_pred HHHHHHHHHHHhhhCCCCC-CcEEEEEecCCCCccCccccCCCccceEEEcCC
Q 045279 545 VVERLLNQLLIELDGADKR-KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 545 ~~~~~~~~ll~~l~~~~~~-~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~ 596 (702)
....+++.|+..++..... .+++||++||.++.++++++| +||+..|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7789999999999987655 669999999999999999998 89999999874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=193.18 Aligned_cols=237 Identities=26% Similarity=0.353 Sum_probs=175.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~ 496 (702)
.|+.++--.++|+.+-.+....+...+....-. +...+-+||+||||||||+|+|++|+.+ ...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 588888778888888776655443322111111 1234558999999999999999999987 457899999
Q ss_pred ccccccCcCchHHHHHHHHHHHHh---CCC--eEEEEeCcchhhcccCC----CCchHHHHHHHHHHHhhhCCCCCCcEE
Q 045279 497 PELLNKYVGESELAVRTLFSRART---CSP--CILFFDEVDALTTKRGK----EGGWVVERLLNQLLIELDGADKRKGVF 567 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~---~~~--~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~ 567 (702)
..++++|.+++.+.+..+|++... -.. -.++|||+++++..|.. +.....-+++|.+|++||......+++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999987642 122 35668999999987732 233455799999999999999999999
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC---CC-C-C--------CC-----HHHHhhhhc
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP---ID-D-S--------VD-----LHTIAQSKF 629 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~---~~-~-~--------~~-----~~~la~~~~ 629 (702)
+++|+|..+.||.||.. |-|-+.++++|+...+.+|++..+.+.- +- . . .. ...+. ...
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~-~~~ 376 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI-ELS 376 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH-HHh
Confidence 99999999999999998 9999999999999999999998776521 10 0 0 01 11122 123
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 630 CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 630 ~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
+.|.||+-||.+=--|- .+. ....+|+.++|..|+..
T Consensus 377 ~~gLSGRtlrkLP~Lah----a~y---------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAH----AEY---------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred hcCCccchHhhhhHHHH----Hhc---------cCCCccChHHHHHHHHH
Confidence 46889988887643222 111 12247899999888754
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=188.28 Aligned_cols=209 Identities=26% Similarity=0.378 Sum_probs=155.5
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~ 506 (702)
.+++++....++..+.+.-...-.. .....+-++||||||||||||++|+-||...|..+-.+.+.++.- .-.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchH
Confidence 3566666666666665532221111 112345678999999999999999999999999998888888643 2234
Q ss_pred hHHHHHHHHHHHHhCCCe-EEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccC
Q 045279 507 SELAVRTLFSRARTCSPC-ILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~-vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r 584 (702)
....+.++|+.+.....+ +|||||+|.+...|.... +...+..+|.||-.-. .....++++.+||+|..+|.++..
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 566789999999876554 688999999999887653 4456778888875543 345678889999999999999988
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhccCCCCC---------------------------CCCHHHHhhhhcCCCCCHHH
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDD---------------------------SVDLHTIAQSKFCENLSGAD 637 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---------------------------~~~~~~la~~~~~~~~sg~d 637 (702)
|||.+++||+|..++|..|+..++.++-... +..+...| ..|+||||++
T Consensus 505 --Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA--kkTeGfSGRE 580 (630)
T KOG0742|consen 505 --RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA--KKTEGFSGRE 580 (630)
T ss_pred --hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH--HhccCCcHHH
Confidence 9999999999999999999999887643211 01123344 5689999999
Q ss_pred HHHHHHHHHH
Q 045279 638 LAAMMNEAAM 647 (702)
Q Consensus 638 l~~~~~~a~~ 647 (702)
|..++-....
T Consensus 581 iakLva~vQA 590 (630)
T KOG0742|consen 581 IAKLVASVQA 590 (630)
T ss_pred HHHHHHHHHH
Confidence 9998864443
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=193.02 Aligned_cols=206 Identities=23% Similarity=0.270 Sum_probs=162.0
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g 505 (702)
.+|+.++--.+.|+.+.+-+...++..+.|++.|....+|.|||||||||||+++.|+|+.++..+.-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 57888888899999999999999999999999999999999999999999999999999999999988887664 2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc-----h--HHHHHHHHHHHhhhCCCCCC--cEEEEEecCCCC
Q 045279 506 ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG-----W--VVERLLNQLLIELDGADKRK--GVFVIGATNRPD 576 (702)
Q Consensus 506 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~-----~--~~~~~~~~ll~~l~~~~~~~--~~~vI~atn~~~ 576 (702)
.... ++.++-.+. +.+||+|.+||.-..-+..... . ...=.++-||+.+||.-..+ --|||+|||..+
T Consensus 273 ~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2222 778876553 5579999999987653322111 1 12345788999999974443 678899999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHH
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAM 641 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~ 641 (702)
.||||++||||+|.+|+++.=+.++...++..++.-.. ...-++.+.........+.||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999987643 2233344442112235578887753
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=176.10 Aligned_cols=202 Identities=26% Similarity=0.358 Sum_probs=128.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|+|++|+++++..+.-.+...... -.+..++|||||||+||||||+.||++++.+|..+++..+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------ 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------ 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------
Confidence 8999999999999987555332221 12346899999999999999999999999999988875432
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
....+..++.... ...||||||||.+.... .+.|+..|++..-.+--|.+......... -.++.+|
T Consensus 88 k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~-----------qe~LlpamEd~~idiiiG~g~~ar~~~~~-l~~FTli 153 (233)
T PF05496_consen 88 KAGDLAAILTNLK--EGDILFIDEIHRLNKAQ-----------QEILLPAMEDGKIDIIIGKGPNARSIRIN-LPPFTLI 153 (233)
T ss_dssp SCHHHHHHHHT----TT-EEEECTCCC--HHH-----------HHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEE
T ss_pred hHHHHHHHHHhcC--CCcEEEEechhhccHHH-----------HHHHHHHhccCeEEEEeccccccceeecc-CCCceEe
Confidence 1244455555543 45699999999987543 34588889876542221211110000001 1238899
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~ 354 (702)
|||+....+++.|+. ||.....+..++.++...|+......+.+..+.+ ...+|+.+.| +++-..+++++
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 999999999999999 9988889999999999999998887777665444 5567777776 66655555443
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=187.00 Aligned_cols=232 Identities=22% Similarity=0.311 Sum_probs=165.8
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|++.+...-. .+... +......+++||||||||||++|++||...+.+|..+++.
T Consensus 19 RP~~lde~vGQ~HLlg~~~-~lrr~---------v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------ 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGK-PLRRA---------VEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------ 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCc-hHHHH---------HhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------
Confidence 3457788888887653211 11111 1123456799999999999999999999999999999873
Q ss_pred cCchHHHHHHHHHHHHhCC----CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCCCc
Q 045279 504 VGESELAVRTLFSRARTCS----PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRPDV 577 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~----~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~~~ 577 (702)
-.+.+.+|.++++|+... .-|||+|||+.+. +.-+..||-.|+ ...+++|+|| |.-..
T Consensus 83 -~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGATTENPsF~ 146 (436)
T COG2256 83 -TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGATTENPSFE 146 (436)
T ss_pred -cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEeccCCCCCee
Confidence 345678999999995432 4799999999999 555677777775 5678888887 55668
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+|+++ |+ .++++.+.+.++...+++.-+. +.++.. .+.++.-+.. +.-..+++|.|.+++..-+.+.....
T Consensus 147 ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~-~l~~~s~GD~R~aLN~LE~~~~~~~~ 222 (436)
T COG2256 147 LNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALD-YLVRLSNGDARRALNLLELAALSAEP 222 (436)
T ss_pred ecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHH-HHHHhcCchHHHHHHHHHHHHHhcCC
Confidence 9999998 88 5889999999999998888332 333331 1222222211 11256788999988744433322211
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .++.+++++.+++..+.....+..+|..+++..++
T Consensus 223 ---------~~-~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKS 259 (436)
T COG2256 223 ---------DE-VLILELLEEILQRRSARFDKDGDAHYDLISALHKS 259 (436)
T ss_pred ---------Cc-ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHh
Confidence 11 34589999999999999999999999999999886
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=168.36 Aligned_cols=131 Identities=47% Similarity=0.787 Sum_probs=115.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQRE 239 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 239 (702)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+....+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999998887 9999999999999887444556
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 045279 240 MERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 240 ~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~ 308 (702)
....++..|+..++.... ...+++||++||.++.++++++| +||+..|.++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~----------------~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSS----------------KNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTT----------------TSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeeccccccc----------------ccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 677888899999987543 23459999999999999999997 79999998873
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=197.25 Aligned_cols=249 Identities=24% Similarity=0.253 Sum_probs=173.0
Q ss_pred HHHHhhhhhccccchhhhhhhhhcc-----ccccccccccccccchhhhhhhhhhhhhcCC--CCCCcccccCCC-----
Q 045279 52 DLMKSMLRDSYSESKITRRKSEEKN-----IEFEVMPRKIDLVNAKSREVEMKKEESVKGG--MGLGAEELKGKE----- 119 (702)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 119 (702)
..|+.++|++|..+|.+..+++... .+++...+++..........++...|..+.. .+.+.+...-..
T Consensus 220 ~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwl 299 (782)
T COG0466 220 EQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWL 299 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 4566788999999999999884332 3355555555544433333334434333222 222211111111
Q ss_pred -------------------CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 120 -------------------GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 120 -------------------~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
.+--.|..|++++|+++.+++....+.+.+ .+.-++|+||||+|||+|++.||+
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccC-------CCcEEEEECCCCCCchhHHHHHHH
Confidence 111267899999999999999765554432 235589999999999999999999
Q ss_pred HhCCCeEEEechhhhcc---------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 181 ETGVPFYKISATEVVSG---------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 181 ~l~~~~~~i~~~~l~~~---------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
.++..|+.++...+.+. |+|+...++-+-+..|...+| +++|||||.|..+...... .+||..
T Consensus 373 al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEV 444 (782)
T COG0466 373 ALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEV 444 (782)
T ss_pred HhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhh
Confidence 99999999998876543 899999998888888877777 9999999999877554322 246665
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
+|--++ ....+++-..+... .+|+||+|+|..+.|+.+|+. |+ .+|.++-++.+|..+|.+.++
T Consensus 445 LDPEQN-~~F~DhYLev~yDL---S~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 445 LDPEQN-NTFSDHYLEVPYDL---SKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCHhhc-CchhhccccCccch---hheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 553222 11112222222222 359999999999999999999 99 889999999999999998765
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-20 Score=190.55 Aligned_cols=206 Identities=25% Similarity=0.321 Sum_probs=158.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+-+|+.++=-.+.|++|.+.+...+...+.+++.|....+|.|||||||||||+++.|+|+.++..++-++.+++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 36999999999999999999999999999999999999999999999999999999999999999999998887532
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---H----HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---E----MERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
. ..++.++... ...+||+|+|||+-+.-+..... . ...-.+.-||.++|++...
T Consensus 274 --n-~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-------------- 334 (457)
T KOG0743|consen 274 --D-SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-------------- 334 (457)
T ss_pred --c-HHHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc--------------
Confidence 2 2367777665 34469999999987643222111 0 1223456789998876431
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCC--CCHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG--FVGADLAA 350 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g--~~~~dl~~ 350 (702)
+.+.=+||.|||..+.|||||+||||+|.+|+++..+.+....+++.++.-.. ...-+.++.+...+ .+++|+..
T Consensus 335 -cg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 335 -CGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -CCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 12336888999999999999999999999999999999999999999887643 11123333333222 36766653
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=179.45 Aligned_cols=207 Identities=25% Similarity=0.429 Sum_probs=152.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccccc
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS 202 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~ 202 (702)
|++++-......+|..+.+.. .+- ...-.+-+|||||||||||||++|+-||...|..+..+.+.++. ....+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aT-aNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qa 427 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIAT-ANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQA 427 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHh-ccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHH
Confidence 667776666666666544322 111 11234567899999999999999999999999999888887752 233344
Q ss_pred HHHHHHHHHHHHhhCC-ceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 203 EENIRDLFSKAYRTAP-SIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 203 ~~~~~~~f~~a~~~~p-~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
...+..+|+.++.... -+|||||.|.++-.+... -++..+..++.||-...+ ...++++
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-------------------qSrdivL 488 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-------------------QSRDIVL 488 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-------------------cccceEE
Confidence 5678999999987654 588999999987665442 345556667776654322 1234888
Q ss_pred EEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC------------------------C---cccH
Q 045279 281 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE------------------------G---SFDL 333 (702)
Q Consensus 281 I~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~------------------------~---~~~~ 333 (702)
+.+||.|+.+|.++-. ||+.+|+||+|..++|..+|..++.++-.. . ...+
T Consensus 489 vlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~ 566 (630)
T KOG0742|consen 489 VLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKC 566 (630)
T ss_pred EeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHH
Confidence 8999999999999988 999999999999999999998877654211 0 0125
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHH
Q 045279 334 VKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 334 ~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+.|..|+||+|++|..|+....
T Consensus 567 ~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 567 SEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred HHHHHhccCCcHHHHHHHHHHHH
Confidence 66889999999999999876543
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=198.93 Aligned_cols=232 Identities=20% Similarity=0.265 Sum_probs=165.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc--------
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-------- 500 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~-------- 500 (702)
+++.|++.+++.+.+++...... +...+.+++|+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999988866544211 122344799999999999999999999999999999765432
Q ss_pred -ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC-----C--------CCCCcE
Q 045279 501 -NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG-----A--------DKRKGV 566 (702)
Q Consensus 501 -~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~-----~--------~~~~~~ 566 (702)
..|+|.....+.+.|..+....| ||||||||.+.+..+.+ ..+.||..||. + ....++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 35788877778888888876555 89999999998643221 23455555542 1 122578
Q ss_pred EEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc-----cCCCC------CCCCHHHHhhhhcCCCCCH
Q 045279 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR-----KKPID------DSVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 567 ~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~------~~~~~~~la~~~~~~~~sg 635 (702)
++|+|||.++.+++++++ ||+ +|.|+.|+.+++..|++.++. ...+. .+..+..++. .++..+..
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~ 540 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGV 540 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCC
Confidence 999999999999999999 995 889999999999999988762 22221 1234556665 46777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCccccHHHHHHHHhh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSK-SSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~-~~~~~~~~~i~~~d~~~al~~ 679 (702)
++|++.+...+..+..+...... .........|+.++++..+..
T Consensus 541 R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 541 RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 99999888888777666553221 111122357888888877654
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-18 Score=161.37 Aligned_cols=188 Identities=25% Similarity=0.357 Sum_probs=122.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|++.++..+.-.+..... ...+..++|||||||+|||++|+.+|++++.+|..++++.+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 355789999999999887655543321 1234568999999999999999999999999999888765322
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~ 567 (702)
...+..++... ....||||||||.+. ...+..|+..|++.. .-.+..
T Consensus 89 ----~~dl~~il~~l--~~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ----AGDLAAILTNL--KEGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----HHHHHHHHHhc--CCCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 12333444443 256799999999999 788888899888632 113478
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
+|+||++...+.+.+.. ||..+..+..|+.++..+|++.-....++.-+.+ ...+|. .+.| +.+-.-++++
T Consensus 152 ligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~--rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR--RSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH--CTTT-SHHHHHHHHH
T ss_pred EeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH--hcCC-ChHHHHHHHH
Confidence 99999999999999988 9998889999999999999998877766654332 455663 2323 4444444444
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=172.27 Aligned_cols=184 Identities=26% Similarity=0.313 Sum_probs=149.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~ 191 (702)
-|+.++--..+|+++..++...++..+....-. +...+-+||+||||||||+|++++|+.+. ..++++|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 478888778899999988876665543322211 34556799999999999999999999983 45789999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhh---CC--ceEEechhhHhhhcchhh----hHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRT---AP--SIVFIDEIDAIASKRENL----QREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~---~p--~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
..+.++|.+++.+.+..+|++.... .. ..++|||++++...+.+. .....-|+++++|+++|.+..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~----- 294 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR----- 294 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-----
Confidence 9999999999999999999887642 22 256799999999877443 234457899999999998765
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
..+|++++|+|-.+.||.|+-. |-|-+.++.+|+...+.+|++..+..
T Consensus 295 ------------~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 295 ------------YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred ------------CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 5679999999999999999988 99999999999999999999876644
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-18 Score=163.83 Aligned_cols=205 Identities=24% Similarity=0.318 Sum_probs=150.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+-+|++.+|++++|++|.-.+.....+. ....|+||+||||.||||||+.||++++..+...++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 3389999999999999987665543332 345789999999999999999999999999988777665
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
+....+..++.... ..+||||||||.+.+.- -.-|...|+++..-+.-|.+-........- ..+.
T Consensus 89 -eK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldL-ppFT 153 (332)
T COG2255 89 -EKPGDLAAILTNLE--EGDVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDL-PPFT 153 (332)
T ss_pred -cChhhHHHHHhcCC--cCCeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccC-CCee
Confidence 23455566666643 44699999999998543 234777788776544333332221211222 2388
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+||||++...+...|+. ||.....+..++.++..+|+......+.+..+.+ ...+|+...| ++|-..++++++
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998887777765544 5567777666 555444554443
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=168.67 Aligned_cols=147 Identities=29% Similarity=0.500 Sum_probs=117.5
Q ss_pred CCCcccccCHHHHHHH---HHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEE---LKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+-++++++|+++.+.. |...+ ....-.+++|||||||||||||+.||+.++..|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3389999999998743 33333 1233467999999999999999999999999999998764
Q ss_pred ccccccHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..-+.++.+++.|... ...||||||||.+....|. .||..++
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD-----------~lLp~vE------------------- 129 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD-----------ALLPHVE------------------- 129 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh-----------hhhhhhc-------------------
Confidence 2346789999999543 2479999999999866543 4777776
Q ss_pred CCCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 273 SKPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 273 ~~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|.|++|||| |+.-.+.+++++ |. .++.+.+.+.++...++...
T Consensus 130 --~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 130 --NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred --CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHH
Confidence 3569999988 556699999999 88 77999999999999999873
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=178.22 Aligned_cols=176 Identities=25% Similarity=0.332 Sum_probs=135.2
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------- 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------- 196 (702)
+|..||+++|+++.+.+...... |-..+.-++|+||||+|||+++++||..+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 67899999999999988654333 3345667999999999999999999999999999998876643
Q ss_pred --ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCCCC
Q 045279 197 --GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDASD 272 (702)
Q Consensus 197 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~~~ 272 (702)
.|+|+...++-+.+......+| +++|||||.+....+.... .+||..||--++ |.++ .-.....
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDH---YLdVp~D- 551 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDH---YLDVPVD- 551 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhh---ccccccc-
Confidence 3899999998888888877777 8999999999854333221 235555553221 1111 1111111
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR 323 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~ 323 (702)
-.+|++|||+|..+.|+++|+. |+ .+|.++-|..+|...|.+.++-
T Consensus 552 --LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 552 --LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred --hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 1359999999999999999999 99 8899999999999999987763
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=194.54 Aligned_cols=217 Identities=23% Similarity=0.229 Sum_probs=150.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh--------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-------- 195 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~-------- 195 (702)
++++|++++|+.+.+.+....... ...+.++||+||||||||++|++||+.++.+++.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458999999999998776544332 12334799999999999999999999999999998776432
Q ss_pred -cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCCCC
Q 045279 196 -SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDASD 272 (702)
Q Consensus 196 -~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~~~ 272 (702)
..|.|.....+...|..+....| |+||||||.+....+.. ....|+..++..+. +.+... +...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~-----~~~~ 459 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYL-----DVPF 459 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccC-----Ccee
Confidence 24667777777777877755555 89999999998643321 13456666664211 111100 0000
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc-----CcccC-----C-cccHHHHHh-hC
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR-----NLRVE-----G-SFDLVKIAR-ST 340 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~-----~~~~~-----~-~~~~~~la~-~t 340 (702)
.-+++++|+|||.++.+++++++ || .+|.|+.|+.+++.+|++.++. ...+. . +..+..+++ .+
T Consensus 460 -d~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 460 -DLSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred -ccCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 12458999999999999999999 99 6899999999999999987652 11111 1 112444444 44
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 341 PGFVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 341 ~g~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
..+..|+|+..+...++..+.++.
T Consensus 536 ~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 536 REAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHH
Confidence 556678888888887777766554
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-17 Score=187.15 Aligned_cols=244 Identities=24% Similarity=0.267 Sum_probs=168.3
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++++.|.+.....+.+.+ ......+++|+||||||||++|+.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 45678888887766554433 12345688999999999999999999987 67889999
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
++.+. .+|.|+.+..++.+|+.+....++||||||+|.+.+.+...++. ..+.+.|...|. ...+.+|++||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEecC
Confidence 88887 57999999999999999987788999999999999765432221 233444555553 46789999998
Q ss_pred CC-----CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHhhhhcCCCC-----CHHHH
Q 045279 574 RP-----DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-----DSVDLHTIAQSKFCENL-----SGADL 638 (702)
Q Consensus 574 ~~-----~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~~~~~-----sg~dl 638 (702)
.. ...|+++.| ||. .|.++.|+.+++..|++......... .+..+..++ .++..| -..-.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~--~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAV--ELSARYINDRFLPDKA 394 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHH--HhhhcccccccCCHHH
Confidence 63 357999999 997 79999999999999999876653211 222334444 223333 23334
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHHh
Q 045279 639 AAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS--P--SVSELQIQRYKTLSETFK 700 (702)
Q Consensus 639 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~--~--~~~~~~~~~~~~~~~~~~ 700 (702)
-.++.+|+....-+. .......|+.+|+..++.... | .++..+...+..+.+.+.
T Consensus 395 i~lld~a~a~~~~~~-------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 395 IDVIDEAGASFRLRP-------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHHHHhhhhhhcCc-------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 456666653211110 001234699999999998874 2 334455666666655544
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=166.43 Aligned_cols=216 Identities=21% Similarity=0.256 Sum_probs=151.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+..|++++|.+..++.+...+.... ....++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4578999999999998877664321 1124567899999999999999999999999888777655432
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
....+..++... ..++||||||+|.+.. ...+.+...|+... ....+.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 122344444433 3578999999999873 22233334443221 1124678
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||++..+++++.+ ||...+.|++|+.+++.+|++..+...++..+ ..++.++ ..+.|.. +.+.++++.+..
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia--~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIA--RRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH--HHcCCCc-hHHHHHHHHHHH
Confidence 9999999999999988 99989999999999999999998887655433 2356666 3454533 666677766554
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.+..+. ...|+.+++..++......
T Consensus 229 ~a~~~~-----------~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 229 FAQVKG-----------DGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHcC-----------CCCCCHHHHHHHHHHhCCC
Confidence 444331 1268888999988876543
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=170.09 Aligned_cols=238 Identities=19% Similarity=0.216 Sum_probs=162.6
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHH---cCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEE---FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~---~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
++|++.+++.+..++...++....... -...+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997776554433221110 01124578999999999999999999999999999999988764 58887
Q ss_pred hHHH-HHHHHHH----HHhCCCeEEEEeCcchhhcccCCCC--ch-HHHHHHHHHHHhhhCCC-----------CCCcEE
Q 045279 507 SELA-VRTLFSR----ARTCSPCILFFDEVDALTTKRGKEG--GW-VVERLLNQLLIELDGAD-----------KRKGVF 567 (702)
Q Consensus 507 ~~~~-~~~~f~~----a~~~~~~vl~iDEid~l~~~r~~~~--~~-~~~~~~~~ll~~l~~~~-----------~~~~~~ 567 (702)
.... +..++.. .....++||||||||.+..++...+ .+ ....+++.||+.|++.. ...+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5443 4444432 2234789999999999987632111 11 12468899999998631 122355
Q ss_pred EEEecCCCC----------------------------------------------------ccCccccCCCccceEEEcC
Q 045279 568 VIGATNRPD----------------------------------------------------VMDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 568 vI~atn~~~----------------------------------------------------~ld~a~~r~gRf~~~i~~~ 595 (702)
+|+|+|-.. .+.|+|+. |+|.+++|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 666655400 13555655 999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 596 LPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 596 ~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
+++.+++.+|+.. +++ ..++. .+.-++.|+...+..+|.++.|+++++..+...+.+.... .
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~----~ 386 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR----E 386 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc----C
Confidence 9999999999972 332 22222 2334677887767788899999999999988888765431 1
Q ss_pred CCCCccccHHHHH
Q 045279 662 DVTPFTIKLTHFE 674 (702)
Q Consensus 662 ~~~~~~i~~~d~~ 674 (702)
......|+.+.+.
T Consensus 387 ~~~~v~I~~~~v~ 399 (412)
T PRK05342 387 DVEKVVITKEVVE 399 (412)
T ss_pred CCceEEECHHHhc
Confidence 2334567777765
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=164.86 Aligned_cols=211 Identities=21% Similarity=0.269 Sum_probs=143.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~ 506 (702)
+|++++|++.+++.+..++..... ....+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 588999999999988876643311 1234567999999999999999999999988876665443221
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEEEE
Q 045279 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFVIG 570 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~vI~ 570 (702)
...+...+... ..+.+|||||++.+.+ .....|+..|+... ....+++|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222333222 3568999999999883 33333444443211 113378899
Q ss_pred ecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 571 ATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 571 atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
+||++..+++++.+ ||...+.+++|+.+++.++++..+.......+ ..++.++ ..+.|+. +.+.+++..+...|
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia--~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIA--RRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH--HHhCCCc-chHHHHHHHHHHHH
Confidence 99999999999988 99889999999999999999988876554432 3355666 3455544 55556666554333
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.... ...|+.+++..++..+
T Consensus 210 ~~~~-----------~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 210 QVRG-----------QKIINRDIALKALEML 229 (305)
T ss_pred HHcC-----------CCCcCHHHHHHHHHHh
Confidence 2221 1258888888888875
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=178.35 Aligned_cols=245 Identities=23% Similarity=0.270 Sum_probs=168.2
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
-.++.+.|-+.....+.+.+.. ....++||+||||||||++|+.+|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3456778877776666553322 235678999999999999999999864 45666666
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...++ .+|.|+.+..++.+|..+....++||||||+|.+.+.+....+. .++.+.|...+ ....+.||++||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHH----hCCCeEEEecCC
Confidence 66665 46889999999999999888788999999999998766432221 22333333333 356789999999
Q ss_pred CCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh--------hhcCCCCCHHHHHH
Q 045279 574 RPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ--------SKFCENLSGADLAA 640 (702)
Q Consensus 574 ~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~--------~~~~~~~sg~dl~~ 640 (702)
.++ ..|+++.| ||+ .|.++.|+.+++..|++.+..++....++.+...|. ..+...+-......
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 57999999 996 799999999999999999877766665555544332 22334455567888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP----SVSELQIQRYKTLSETF 699 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~----~~~~~~~~~~~~~~~~~ 699 (702)
++.+|+...-- .. .......|+.+|+.+++.+..- .+...+.+.+..+...+
T Consensus 401 lldea~a~~~~--~~-----~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L 456 (758)
T PRK11034 401 VIDEAGARARL--MP-----VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_pred HHHHHHHhhcc--Cc-----ccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHh
Confidence 89988853211 00 0011225888999998887653 12233444444554443
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=155.90 Aligned_cols=232 Identities=22% Similarity=0.328 Sum_probs=155.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe---EEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---FIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~ 501 (702)
+.++++.+|++.+... ...+...+ ....-.+++|+||||||||+||+.|+...+.+ |+++++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~i---------eq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLI---------EQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHH---------HcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 4466777777765443 12121111 11233578999999999999999999987655 77777633
Q ss_pred cCcCchHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CC
Q 045279 502 KYVGESELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NR 574 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~ 574 (702)
.....+|.+|+.+.. ....|||||||+.+. +.-+..||-.++ ...+++|+|| |.
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~fLP~VE----~G~I~lIGATTENP 261 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDTFLPHVE----NGDITLIGATTENP 261 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhcccceec----cCceEEEecccCCC
Confidence 445678999988753 456899999999998 444555655543 5678889887 55
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc---c--C---CCCC------CCCHHHHhhhhcCCCCCHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---K--K---PIDD------SVDLHTIAQSKFCENLSGADLAA 640 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~---~--~---~~~~------~~~~~~la~~~~~~~~sg~dl~~ 640 (702)
...+..++++ ||. ++.......+....||..-+. + . ++.. +.-++.++ ..+.+|.|.
T Consensus 262 SFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla------~lsdGDaR~ 332 (554)
T KOG2028|consen 262 SFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA------YLSDGDARA 332 (554)
T ss_pred ccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH------HhcCchHHH
Confidence 5689999999 994 667777777887778776333 1 1 1111 11234444 445568777
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.++..-+. +......... .+...++.+|+.++|+...-.+...+.++|..+++.+++
T Consensus 333 aLN~Lems-~~m~~tr~g~---~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKS 389 (554)
T KOG2028|consen 333 ALNALEMS-LSMFCTRSGQ---SSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKS 389 (554)
T ss_pred HHHHHHHH-HHHHHhhcCC---cccceecHHHHHHHHhhccceecccchhHHHHHHHHHHh
Confidence 76643332 2222211111 134579999999999999988999999999999998875
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=161.21 Aligned_cols=204 Identities=26% Similarity=0.346 Sum_probs=137.2
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|++++|+++++++|...+...... -....+++|+||||||||++|+++|+.++..+..+++..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 7999999999999998777432211 123567999999999999999999999998877665543221
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
...+...+... ..+.+|||||+|.+.... ...|+..+++....+-.+............+ .+.+|
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li 133 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLV 133 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCC-CeEEE
Confidence 12233333332 346799999999887432 1235555554433221111111111111122 27899
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||.+..+++++++ ||...+.+++|+.+++.+++...+.......+. .+..+++.+.|+. +.+..++..+.
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 999999999999999 998888999999999999999887765444333 3567888887754 55566666543
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=164.76 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.++..|...+.. -+.++.+||+|||||||||+|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 34899999999999998877632 1234569999999999999999999998753
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.+++.. ......++.+.+.+. .+...|+||||+|.|... ..+.||..
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-----------A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-----------SFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-----------HHHHHHHH
Confidence 22222211 111234455544443 334569999999988642 35568888
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++ .++++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.++..+....+....
T Consensus 145 LEE-------------------Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 145 LEE-------------------PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred hhc-------------------CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 875 35679999999999999999999 99 679999999999999999888776554333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..+++...| +.|+..++++.+.
T Consensus 203 eAL~~Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 203 EGLFWIAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 35667766666 6777777776654
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=145.84 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=151.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+..|++.+|++.+|..+.-++...... ....-|+|||||||.||||+|..+|++++.++-..+++-+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3567899999999999998777655322 245568999999999999999999999999988887766532
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~ 567 (702)
...+..++... .+.+||||||||.+. ..+-..|...|+++. .-....
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 23344555443 356899999999998 455555566677632 123578
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
+|+||.+.-.|...+.. ||..+..+..|+.++...|+....+...+.-+. ....+|.++ .| +.+=.-+++++.-
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS--RG-TPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS--RG-TPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc--cC-CcHHHHHHHHHHH
Confidence 99999999999998877 999999999999999999999988777665433 345666432 22 3333333333322
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
-.|.-.. ...|+.+-..+|+....
T Consensus 229 Dfa~V~~-----------~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 229 DFAQVKG-----------DGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHhc-----------CCcccHHHHHHHHHHhC
Confidence 2222111 12566666777776653
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=176.21 Aligned_cols=218 Identities=20% Similarity=0.219 Sum_probs=145.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------- 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------- 196 (702)
.+++|++++|+++.+.+....... -..+..++|+||||||||++++.+|+.++.+++.++++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 458999999999998886443221 124467999999999999999999999999999888776432
Q ss_pred --ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 197 --GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 197 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.|.|.....+...+..+....| |+||||||.+....+.. ....|+..+|.-+......... +... .
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~---~~~~-d 462 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYL---EVDY-D 462 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccc---cccc-c
Confidence 2556666555555555443344 89999999998653321 2345777776422111100000 0000 1
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-----cccC-----Cccc-HHHHH-hhCCC
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-----LRVE-----GSFD-LVKIA-RSTPG 342 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-----~~~~-----~~~~-~~~la-~~t~g 342 (702)
-++|++|+|+|.. .|+|+|++ || .+|.+..++.++..+|++.++.. .... .... +..++ ..+..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 2459999999988 59999999 99 68999999999999999877631 1111 1111 33343 33455
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 045279 343 FVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 343 ~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
+-.|.+++.+...++..+.+.+
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 5668888888877766665544
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=162.30 Aligned_cols=206 Identities=27% Similarity=0.328 Sum_probs=139.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|++++++.+...+..... .-.+..+++|+||||||||++|+++|+.++..+..+++..+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 34899999999999999876643211 123457899999999999999999999999988777655432
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
....+..++... ..+++|||||||.+....+ ..+...|++....+--+............+ .+.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~ 152 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFT 152 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceeecCC-Cce
Confidence 123344455443 3467999999998864221 124445554322111111100000001112 378
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+|++||.+..+++++++ ||...+.|+.|+.+++.+|+............. .+..+++.+.|.. +.+..+++.+.
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 89999999999999999 998889999999999999999888776655443 3667888877744 66666665543
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=168.01 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=132.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|++++|++.+...|...+... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3467899999999988877765421 334568999999999999999999988652
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.++++. ..+...+|.+.+.+. ...+.|+||||+|.+. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 33333321 112345666655543 3356799999999998 788999999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+. ...++++|++|+.++.|.+++++ || .++.|..++.++....++..+.+.++.. +..+..++ .++
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia------~~S 212 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA------KKG 212 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 9975 34678888999999999999998 99 4788999999888888988888766542 23345555 345
Q ss_pred HHHHHHHHH
Q 045279 635 GADLAAMMN 643 (702)
Q Consensus 635 g~dl~~~~~ 643 (702)
+|++|.+++
T Consensus 213 ~Gd~RdAL~ 221 (484)
T PRK14956 213 DGSVRDMLS 221 (484)
T ss_pred CChHHHHHH
Confidence 566666555
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-16 Score=163.99 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=161.1
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcC----C-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cC
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFG----V-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KY 503 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~----~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~ 503 (702)
.++|++.+++.+..++...++......... . ....++||+||||||||++|+++|..++.+|..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999988776654433321100000 1 12468999999999999999999999999999999888753 58
Q ss_pred cCchH-HHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCC-c-h-HHHHHHHHHHHhhhCCC-----------CCC
Q 045279 504 VGESE-LAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEG-G-W-VVERLLNQLLIELDGAD-----------KRK 564 (702)
Q Consensus 504 ~g~~~-~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~-~-~-~~~~~~~~ll~~l~~~~-----------~~~ 564 (702)
+|... ..+..++..+ ....++||||||+|.+..++.... . + ....+++.||+.|+|.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 88753 3344444322 234678999999999997543211 1 1 11368889999997642 234
Q ss_pred cEEEEEecCCC---------------------------C-----------------------ccCccccCCCccceEEEc
Q 045279 565 GVFVIGATNRP---------------------------D-----------------------VMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 565 ~~~vI~atn~~---------------------------~-----------------------~ld~a~~r~gRf~~~i~~ 594 (702)
+.++|+|+|-. + .+.|+|+. |+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 57888888851 0 13456655 99999999
Q ss_pred CCCCHHHHHHHHHHH----hcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 595 PLPTPDERGLILEAL----ARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~~----~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
.+.+.+++.+|+... +++ .++. .+.-++.++...+...|.+|.|+.+++...+.++-+....
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~---- 391 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL---- 391 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC----
Confidence 999999999998752 322 1221 1233677887767778899999999999888777765431
Q ss_pred CCCCCccccHHHHH
Q 045279 661 SDVTPFTIKLTHFE 674 (702)
Q Consensus 661 ~~~~~~~i~~~d~~ 674 (702)
.......|+.+.+.
T Consensus 392 ~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 392 EDLEKVVITKETVL 405 (413)
T ss_pred CCCcEEEECHHHHc
Confidence 22333456666553
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-16 Score=168.05 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=144.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+.+|++++|++.+++.|...+... ..+.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3567899999999988776654321 34566899999999999999999998754
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.++++. ..+...+|.+.+.+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHH
Confidence 345554432 1223446666665542 245799999999997 667888998
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++|+.+..+.+++.+ |+. ++.|.+++.++...+++..+...++.- +..++.++. ++
T Consensus 140 ~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~------~s 208 (472)
T PRK14962 140 TLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK------RA 208 (472)
T ss_pred HHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------Hh
Confidence 888543 457777777778899999988 884 899999999999999999887655432 233455662 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++|+|.+++.....+.. .. ..|+.+++..++...
T Consensus 209 ~GdlR~aln~Le~l~~~---~~---------~~It~e~V~~~l~~~ 242 (472)
T PRK14962 209 SGGLRDALTMLEQVWKF---SE---------GKITLETVHEALGLI 242 (472)
T ss_pred CCCHHHHHHHHHHHHHh---cC---------CCCCHHHHHHHHcCC
Confidence 56777666544322111 00 148888888888665
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=161.27 Aligned_cols=244 Identities=24% Similarity=0.320 Sum_probs=169.9
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC-c
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-E 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g-~ 506 (702)
-++|++++|+.+.-++............+ .-.+|.++||+||||||||++|+++|..++.+|+.++++.+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999998877665443222211111 1235689999999999999999999999999999999998874 6888 5
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 045279 507 SELAVRTLFSRA-------------------------------------------------------------------- 518 (702)
Q Consensus 507 ~~~~~~~~f~~a-------------------------------------------------------------------- 518 (702)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 667677766655
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q 045279 519 -----------------------------------------------------------------------RTCSPCILF 527 (702)
Q Consensus 519 -----------------------------------------------------------------------~~~~~~vl~ 527 (702)
+....+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012557999
Q ss_pred EeCcchhhcccCCCCchH-HHHHHHHHHHhhhCC--------CCCCcEEEEEecC----CCCccCccccCCCccceEEEc
Q 045279 528 FDEVDALTTKRGKEGGWV-VERLLNQLLIELDGA--------DKRKGVFVIGATN----RPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~-~~~~~~~ll~~l~~~--------~~~~~~~vI~atn----~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|||||+++.+......++ ..-+++.||..++|. -..+++++||+.- .|..|-|.|.- ||+.++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 999999997653322222 255899999999983 3557888888763 46667777754 99999999
Q ss_pred CCCCHHHHHHHH----HHHh-------ccCCCC---CCCCHHHHhhhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 595 PLPTPDERGLIL----EALA-------RKKPID---DSVDLHTIAQSKFC-----ENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 595 ~~p~~~~r~~il----~~~~-------~~~~~~---~~~~~~~la~~~~~-----~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
..++.++...|| ..++ +..++. .+..+..+|..... .+..++-|+.++......+.-+.-
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p- 409 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP- 409 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC-
Confidence 999999999888 2222 222222 23345666655443 566778888888876654443322
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhc
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
........|+.+.+...+..+
T Consensus 410 ----~~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 410 ----DLSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred ----CCCCCEEEECHHHHHhHHHHH
Confidence 122345678888887777665
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=164.09 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=148.9
Q ss_pred CccccccCCcccchhh---hHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHE---FDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
+.++++++|++.+... +...+.. ....+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 4567889998887555 5554421 234579999999999999999999999999999987532
Q ss_pred cCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCC
Q 045279 502 KYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRP 575 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~ 575 (702)
+...++.+++.+. ...+.||||||+|.+. ...++.|+..++. ..+++|++| |..
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~~ 132 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENPS 132 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCChh
Confidence 2345666666653 2356899999999987 5667777877763 456667665 334
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC--C-C-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP--I-D-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~--~-~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
..+++++++ || .++.|++++.++...+++..+.... . . .+..++.++ .++++|++.+++.....+..
T Consensus 133 ~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~------~~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALA------RLANGDARRALNLLELAALG 203 (413)
T ss_pred hhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH------HhCCCCHHHHHHHHHHHHHc
Confidence 578999988 98 6889999999999999988776421 1 1 112233444 23455666555433222211
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
. ..|+.+++..+++.........+..+|+.+++..+
T Consensus 204 ---~----------~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~k 239 (413)
T PRK13342 204 ---V----------DSITLELLEEALQKRAARYDKDGDEHYDLISALHK 239 (413)
T ss_pred ---c----------CCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHH
Confidence 1 16899999999887654454444556766665544
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-16 Score=152.84 Aligned_cols=192 Identities=20% Similarity=0.275 Sum_probs=138.0
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC------eEEE
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA------NFIH 493 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~------~~~~ 493 (702)
.....+..++++.|++.+++.|...+.. ....++|||||||||||+.|+++|.++.. .+..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 3344567889999999999988876543 34467899999999999999999998854 3345
Q ss_pred EecccccccCcCchHHHHHHHHHHHHh---------CC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 494 IKGPELLNKYVGESELAVRTLFSRART---------CS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 494 i~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
.+.++..+.-++. ..+ .-|++... ++ +.|++|||+|.+. .+.++.|.+.|+.+..
T Consensus 94 lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~s~- 158 (346)
T KOG0989|consen 94 LNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDFSR- 158 (346)
T ss_pred hcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcccc-
Confidence 5666654432221 111 22333322 22 3799999999999 8999999999997654
Q ss_pred CcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHH
Q 045279 564 KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMM 642 (702)
Q Consensus 564 ~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~ 642 (702)
.+.+|..||+.+.|...+.+ |+. .+.|+....+.....|+....+.++.-+.+ ++.++ .++++|||.++
T Consensus 159 -~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~------~~S~GdLR~Ai 228 (346)
T KOG0989|consen 159 -TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA------KISDGDLRRAI 228 (346)
T ss_pred -ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH------HHcCCcHHHHH
Confidence 55666679999999999988 995 677887777777788888888877764433 45555 45888999877
Q ss_pred HHHHHHH
Q 045279 643 NEAAMAA 649 (702)
Q Consensus 643 ~~a~~~a 649 (702)
.-....+
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 6544433
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=166.56 Aligned_cols=186 Identities=22% Similarity=0.269 Sum_probs=137.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+..+.+||+||+||||||+++.||+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 3899999999999999987621 1334568999999999999999999998652
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.++..+ ......++.+++.+.. +...|+||||+|.|... ..+.||+.|
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-----------A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-----------AFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-----------HHHHHHHHH
Confidence 22222211 1123345666665532 34569999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. +.++.||.+||.+..|.+.+++ |+ ..+.|..++.++..++|..++....+..+.
T Consensus 144 EEP-------------------P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e 201 (830)
T PRK07003 144 EEP-------------------PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ 201 (830)
T ss_pred Hhc-------------------CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 863 4568999999999999999999 99 779999999999999999988776654433
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+..+++...| +.++..+++.++...
T Consensus 202 AL~lIA~~A~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 202 ALRLLARAAQG-SMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 35567777766 677777777766543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=167.21 Aligned_cols=186 Identities=21% Similarity=0.287 Sum_probs=136.8
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
.-+|++|+|++.+++.|.+.+.. -+.++.+||+||+||||||+|+.||+.+++.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 33899999999999999987732 1234668999999999999999999999761
Q ss_pred ---------------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 186 ---------------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 186 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
++.++..+ ......++.+++.+. .+...|+||||+|.|... ..+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-----------AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-----------AFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-----------HHH
Confidence 12222211 112344566666543 334569999999988642 345
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR 326 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~ 326 (702)
.||+.|++ .+++++||.+||.+..|.+.+++ |+ ..+.|..++.++..+.+..++....
T Consensus 143 ALLKTLEE-------------------PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 143 AMLKTLEE-------------------PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred HHHHhhcc-------------------CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 68888886 35668999999999999999999 98 7799999999999999988877655
Q ss_pred cCCccc-HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 327 VEGSFD-LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 327 ~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.+ +..+++...| +.++..++++++..
T Consensus 201 i~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 201 IAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 544333 4556666655 77777777776543
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=158.87 Aligned_cols=244 Identities=23% Similarity=0.305 Sum_probs=169.4
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC-c
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-E 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g-~ 506 (702)
.++|++.+++.+..++........+..... -..+.++||+||||||||++|+.+|..++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999877755432221111111 113589999999999999999999999999999999998886 6888 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 045279 507 SELAVRTLFSRAR------------------------------------------------------------------- 519 (702)
Q Consensus 507 ~~~~~~~~f~~a~------------------------------------------------------------------- 519 (702)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5666777766661
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 045279 520 -----------------------------------------------------------------------TCSPCILFF 528 (702)
Q Consensus 520 -----------------------------------------------------------------------~~~~~vl~i 528 (702)
....+|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred eCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEecC----CCCccCccccCCCccceEEEcC
Q 045279 529 DEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGATN----RPDVMDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~atn----~~~~ld~a~~r~gRf~~~i~~~ 595 (702)
||||+++.+.+....+++ .-+++.||..++|. -+++++++||+.- .|+.|-|.|.- ||+.++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 999999976533222332 55899999999983 3567888888763 46667788865 999999999
Q ss_pred CCCHHHHHHHHH----HHhc-------cCCCC---CCCCHHHHhhhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 596 LPTPDERGLILE----ALAR-------KKPID---DSVDLHTIAQSKFC-----ENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 596 ~p~~~~r~~il~----~~~~-------~~~~~---~~~~~~~la~~~~~-----~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.++.++...||. ..++ ..++. .+..++.+|..... .+..++-|+.++........-+.-
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p-- 411 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP-- 411 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC--
Confidence 999999998882 2333 22222 23345667755443 466778888888776654443321
Q ss_pred cCCCCCCCCccccHHHHHHHHhhc
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
........|+.+.+...+..+
T Consensus 412 ---~~~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 412 ---DMSGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred ---CCCCCEEEECHHHHHHHHHHH
Confidence 122344678888777766655
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=164.09 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=149.3
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-----
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN----- 501 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~----- 501 (702)
.-+|-.|++++|+++-+++.-.. =.|...+.-++|+||||+|||++++.+|..++..|++++...+.+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 34678999999999988775431 113334556889999999999999999999999999998654432
Q ss_pred ----cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHH-----HHHH-hhhCCCCCCcEEEEEe
Q 045279 502 ----KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLN-----QLLI-ELDGADKRKGVFVIGA 571 (702)
Q Consensus 502 ----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~-----~ll~-~l~~~~~~~~~~vI~a 571 (702)
.|+|.....+-+.++++...+| +++|||+|.+...-+++..+..-+++. .|+. .|+-.-.-.+|++|||
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 3999988888899999998888 889999999984333332222222111 0111 1121224467999999
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-----CCC-CCCCHHHHhhhhcCCCCC---H-----HH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK-----PID-DSVDLHTIAQSKFCENLS---G-----AD 637 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-----~~~-~~~~~~~la~~~~~~~~s---g-----~d 637 (702)
.|..+.|.++++. |+ .+|.++-|..+|..+|.+.++-.. ++. ..+++..-|...+...|+ | ..
T Consensus 561 AN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ 637 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQ 637 (906)
T ss_pred ccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999998 99 499999999999999998886542 222 234444433323333332 2 34
Q ss_pred HHHHHHHHHHHHHHHH
Q 045279 638 LAAMMNEAAMAALEDK 653 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~ 653 (702)
|..+|+.++..-++..
T Consensus 638 iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 638 IEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5556776666555444
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=163.39 Aligned_cols=240 Identities=18% Similarity=0.224 Sum_probs=158.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-----
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN----- 501 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~----- 501 (702)
.-.+-.|++.+|+++.+++.-.. ..+-..+.-++|+||||+|||+|++.+|+.++..|+++....+.+
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 34567899999999988775432 112233455789999999999999999999999999998654432
Q ss_pred ----cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH-----HH-hhhCCCCCCcEEEEEe
Q 045279 502 ----KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL-----LI-ELDGADKRKGVFVIGA 571 (702)
Q Consensus 502 ----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l-----l~-~l~~~~~~~~~~vI~a 571 (702)
.|+|.....+-+-+.+|...+| |++|||||.+...-.++..+.+-+++.-- .. .++-.-.-.+|++|+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 3999988888889999998888 89999999998654444333333322111 10 0111123457999999
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-----CCCC-CCCCHHHHhhhhcCCCCC---H-HHHHHH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-----KPID-DSVDLHTIAQSKFCENLS---G-ADLAAM 641 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~-~~~~~~~la~~~~~~~~s---g-~dl~~~ 641 (702)
+|..+.|+.+++. |+. +|.++-|+.+|..+|.+.++-. .++. .+..+..-|...+...|+ | +.|.+-
T Consensus 473 ANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~ 549 (782)
T COG0466 473 ANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLERE 549 (782)
T ss_pred cCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHH
Confidence 9999999999998 994 9999999999999999887542 3333 123333322222233332 2 444444
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+...+..++.+....... ....|+..++.+-|....
T Consensus 550 i~ki~RK~~~~i~~~~~k----~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 550 IAKICRKAAKKILLKKEK----SIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHHHHHHHHHHhcCcc----cceeeCHHHHHHHhCCcc
Confidence 444444444444332111 113577777777766543
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=172.15 Aligned_cols=230 Identities=17% Similarity=0.257 Sum_probs=165.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc-------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------- 500 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------- 500 (702)
-.+..|++.+|+.+.+++..... .+...+..++|+||||||||++++.+|+.++.+|+.++.+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 34589999999999876654321 1223445689999999999999999999999999998866543
Q ss_pred --ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------------CCCCc
Q 045279 501 --NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------------DKRKG 565 (702)
Q Consensus 501 --~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------------~~~~~ 565 (702)
..|+|.....+.+.+..+....| ||||||+|.+....+. +..+.|+..||.. ....+
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCc
Confidence 23677766666666766655444 8999999999864322 1244556555531 13367
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-----CCCC------CCCCHHHHhhhhcCCCCC
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-----KPID------DSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~~~~~~~s 634 (702)
+++|+|+|.. .|+++|+. ||. +|.|+.|+.++..+|.+.++.. .... .+.-++.++. .++..+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~G 540 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAG 540 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccC
Confidence 8999999987 59999999 995 8999999999999999888741 1111 1222456664 5667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|.|+++++..+..++.+..... ......|+.+++.+.|..-+
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHHHHHHhCCCc
Confidence 89999999998887777765421 12345789999988887543
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=166.95 Aligned_cols=213 Identities=22% Similarity=0.271 Sum_probs=147.9
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEE
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFI 492 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~ 492 (702)
.....|+++.|.+...+.+...+. ...+.++||+||||||||++|+++++.+ +.+|+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 345688999999988777654321 1345689999999999999999998753 36899
Q ss_pred EEecccc-------cccCcCchH----------------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHH
Q 045279 493 HIKGPEL-------LNKYVGESE----------------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERL 549 (702)
Q Consensus 493 ~i~~~~l-------~~~~~g~~~----------------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~ 549 (702)
.++++.. .....|... .....++. ....++|||||++.+. ...
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~ 191 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQ 191 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHH
Confidence 9998642 111111000 00001222 2356899999999999 788
Q ss_pred HHHHHHhhhCCC--------------------------CCCcEEEE-EecCCCCccCccccCCCccceEEEcCCCCHHHH
Q 045279 550 LNQLLIELDGAD--------------------------KRKGVFVI-GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 550 ~~~ll~~l~~~~--------------------------~~~~~~vI-~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
++.||..|+... -..++.+| +||+.++.++|++++ ||. .+.|++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 888888775410 01233444 556779999999988 985 788999999999
Q ss_pred HHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 603 GLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 603 ~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..|++..+++..+.-+ ..++.++ .+ .++++++.++++.|+..|..+.. ..|+.+|++.++..-
T Consensus 269 ~~Il~~~a~k~~i~is~~al~~I~--~y--~~n~Rel~nll~~Aa~~A~~~~~-----------~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 269 KEIAKNAAEKIGINLEKHALELIV--KY--ASNGREAVNIVQLAAGIALGEGR-----------KRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHH--Hh--hhhHHHHHHHHHHHHHHHhhCCC-----------cEEcHHHHHHHhCCc
Confidence 9999999988665432 2244444 22 24789999999999877765421 279999999999744
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=166.41 Aligned_cols=208 Identities=23% Similarity=0.384 Sum_probs=134.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKI 189 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i 189 (702)
+.+|++|+|.+..++.+...+. ...+.++||+||||||||++|+++.+.. +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 3489999999999998885441 1235689999999999999999997642 3678999
Q ss_pred echhh-------hcccccccH----------------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 190 SATEV-------VSGVSGASE----------------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 190 ~~~~l-------~~~~~g~~~----------------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
+|+.. .....+... ..-.+.+..+ ...+||||||+.|.... .+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~-----------q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQ-----------MN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHH-----------HH
Confidence 98642 111111100 0001123333 34599999999987543 33
Q ss_pred HHHHHHhhhccccCCCCCCCCCC---------CCCCCCCeEEEEEec-CCCCCCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSD---------ASDSKPGYVLVIGAT-NRPDAVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~---------~~~~~~~~v~vI~at-n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
.|+..+++...++..+....... .....+.++++|++| +.++.++|++++ |+ ..+.|++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 56777765433322111110000 011123446666554 668999999999 98 578999999999999
Q ss_pred HHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 317 ILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 317 Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
|++..+++.......+ +..++..+. +++++.++++.|+..+
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 9999888766543333 344444432 7899999988887655
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=167.29 Aligned_cols=185 Identities=21% Similarity=0.285 Sum_probs=135.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|.+.+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 457899999999999888766432 34556799999999999999999998865
Q ss_pred --------------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 490 --------------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 490 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
.+++++.++ ..+...+|.+.+.+. .....|+||||+|.+. ....|
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHHH
Confidence 223333221 123445677776654 2346899999999998 78899
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~ 630 (702)
.||+.|+.. ..++++|++||.++.|.+.+++ || ..+.|..++.++..+.++..+.+.++..+. .++.++ ..+
T Consensus 143 ALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA--~~A 215 (700)
T PRK12323 143 AMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA--QAA 215 (700)
T ss_pred HHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHc
Confidence 999999864 4567888899999999999998 99 689999999999999988888766554332 245555 222
Q ss_pred CCCCHHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEAA 646 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a~ 646 (702)
+-+.++..+++..+.
T Consensus 216 -~Gs~RdALsLLdQai 230 (700)
T PRK12323 216 -QGSMRDALSLTDQAI 230 (700)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 224455555554433
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-15 Score=161.09 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=136.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||||||||++|+++|+.+++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4899999999999999887731 2335778999999999999999999998752
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+...+. .+...|+||||+|.|... ..+.|+..+
T Consensus 80 ~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHHHHHH
Confidence 23333321 112345566665543 234569999999988643 345678888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
++. ++.+.+|.+|+.+..+.+.+++ |+ .++.|..++.++....+..++..........
T Consensus 143 EEP-------------------P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e 200 (702)
T PRK14960 143 EEP-------------------PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD 200 (702)
T ss_pred hcC-------------------CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 752 4557888888888889999988 98 6799999999999999998887766554433
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+++.+.| +.|++.++++.+..
T Consensus 201 AL~~IA~~S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 201 AIWQIAESAQG-SLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 5567766655 88888888776653
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=158.23 Aligned_cols=183 Identities=19% Similarity=0.252 Sum_probs=127.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--------------- 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------------- 184 (702)
+-+|++++|++++++.|...+.. -+.++.+||+|||||||||+|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 34899999999999888876622 123466999999999999999999999864
Q ss_pred ---------CeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 185 ---------PFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 185 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
.++.++++. ......++.+.+.+.. +...|+||||+|.+... ..+.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-----------a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-----------AFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-----------HHHHHHHH
Confidence 244444321 1112344555544432 23469999999988532 23457777
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
++.. ++.+++|++|+.+..+++++++ |+ ..+.|..|+.++...+++..+.........
T Consensus 141 LE~p-------------------~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 141 LEEP-------------------PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred HHhC-------------------CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 7642 4457888888778899999999 98 689999999999999999888765543333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+..+++.+.| ..+.+.+.+..
T Consensus 199 eal~~Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 199 EALSFIAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHH
Confidence 35567766554 45554444443
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=165.26 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=133.9
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~~ 192 (702)
.+|++|+|++.+++.|...+.. -+.++.+||+|||||||||+|+++|+.+++... .-+|.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 4899999999999999877632 123455799999999999999999999976410 00111
Q ss_pred hhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ +.+ .....++.+.+.+. .+...|+||||+|.|... ..+.||..|++
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-----------AqNALLKtLEE---- 145 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-----------SFNALLKTLEE---- 145 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-----------HHHHHHHHHhc----
Confidence 11111 001 11234555555443 234569999999998633 45578888886
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la 337 (702)
.++++++|++|+.+..|.+.+++ |+ .++.|..++.++....+...+....+.... .+..++
T Consensus 146 ---------------PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 146 ---------------PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred ---------------cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35668899999999999999999 98 779999999999999998887665443332 355666
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAG 356 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~ 356 (702)
+.+.| +.|++.+++..+.
T Consensus 208 ~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 208 KAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 66655 7777777777655
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=160.04 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=134.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|..++.. .+.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45789999999999988876532 134556799999999999999999998854
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.+++++.++ ..+...++.+++.+.. ....|+||||+|.|. ...+|.||+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHHH
Confidence 233333321 1233456777766542 346899999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ..++.||++||.++.|.+.+++ || ..+.|..++.++...+|+..+.+.++..+ ..+..|+ ..++| +.
T Consensus 143 LEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~G-sm 214 (830)
T PRK07003 143 LEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA--RAAQG-SM 214 (830)
T ss_pred HHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCC-CH
Confidence 9864 4477888899999999999988 99 68999999999999999998887665432 3345555 22222 33
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 44445544433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=157.19 Aligned_cols=203 Identities=20% Similarity=0.237 Sum_probs=138.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.+...+.. + +.+..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999888775532 1 345567999999999999999999988532
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ......++.+.+.+.. ....|+||||+|.+. ...++.||..
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHH
Confidence 22222211 1233456677665542 235699999999997 6778899999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
++... ..+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++...+++..+++.+..- +..++.++. +++
T Consensus 143 lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~------~s~ 211 (363)
T PRK14961 143 LEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY------HAH 211 (363)
T ss_pred HhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 98643 456677778888889888877 88 5899999999999999999888766432 233455552 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
++++.+++..-..+.. . ...|+.+++.+++..
T Consensus 212 G~~R~al~~l~~~~~~-~-----------~~~It~~~v~~~l~~ 243 (363)
T PRK14961 212 GSMRDALNLLEHAINL-G-----------KGNINIKNVTDMLGL 243 (363)
T ss_pred CCHHHHHHHHHHHHHh-c-----------CCCCCHHHHHHHHCC
Confidence 4555444432211111 0 115777777776653
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=162.68 Aligned_cols=180 Identities=22% Similarity=0.268 Sum_probs=133.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 46799999999999988876642 144567899999999999999999998865
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++- .+...+|.+...+. ...+.|+||||+|.+. ....+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHH
Confidence 3444444321 23445677766553 2356799999999998 6788999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+.+|++|+.+..+.+.+++ |+ .++.|..++.++....++..+.+.++..+ ..+..++. .++
T Consensus 142 LEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~------~S~ 210 (702)
T PRK14960 142 LEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE------SAQ 210 (702)
T ss_pred HhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 98643 456777788888888888887 88 58999999999999999998887765433 33455662 244
Q ss_pred HHHHHHHHH
Q 045279 636 ADLAAMMNE 644 (702)
Q Consensus 636 ~dl~~~~~~ 644 (702)
+++|.+++.
T Consensus 211 GdLRdALnL 219 (702)
T PRK14960 211 GSLRDALSL 219 (702)
T ss_pred CCHHHHHHH
Confidence 555555543
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=161.77 Aligned_cols=185 Identities=24% Similarity=0.311 Sum_probs=135.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. + +-++.+||+||+||||||+|+.+|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4899999999999999877732 1 234558999999999999999999998763
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. .+...|+||||+|.|... ..+.||+.|
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-----------a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-----------HHHHHHHHH
Confidence 22222221 112234555555543 234569999999988743 355688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .++++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++....+...+....+....
T Consensus 144 EE-------------------Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~ 201 (647)
T PRK07994 144 EE-------------------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR 201 (647)
T ss_pred Hc-------------------CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 86 35678899999999999999999 98 789999999999999998887665544332
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..++..+.| +.++...+++.+..
T Consensus 202 aL~~Ia~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 202 ALQLLARAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766665 77777777776543
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=169.05 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=139.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
+..++.++|.+.....+.+.+. .....+++|+||||||||++|+.+|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3467788888886444433221 2344578999999999999999999976 3557778
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+.+.+. ..|.|+.+..++.+|+.+.. ..++||||||+|.+.+.++..+. .++-+.|+..| ....+.+|+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l----~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPAL----ARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHh----hCCCeEEEEe
Confidence 777766 36899999999999999864 45789999999999976543322 12233444444 3567899999
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-----CCCHHHHhhhhcCCCC-----CHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-----SVDLHTIAQSKFCENL-----SGA 636 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-----~~~~~~la~~~~~~~~-----sg~ 636 (702)
|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+.+...... +..+..++ .++.+| -..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~--~ls~ryi~~r~LPD 397 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV--ELSHRYIPGRQLPD 397 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH--HHcccccccccCcc
Confidence 98643 48999999 995 899999999999999877766543222 22334444 334444 334
Q ss_pred HHHHHHHHHHH
Q 045279 637 DLAAMMNEAAM 647 (702)
Q Consensus 637 dl~~~~~~a~~ 647 (702)
-.-.++.+|+.
T Consensus 398 KAIdlldea~a 408 (852)
T TIGR03345 398 KAVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHHH
Confidence 45566777764
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=161.90 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=135.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|.+.++..+..++.... .| .++.++||+||||||||++|+++|++++.+++.+++++...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 45678999999999999888775432 12 34778999999999999999999999999999999987532
Q ss_pred cCchHHHHHHHHHHHHh------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 504 VGESELAVRTLFSRART------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
...++.+...+.. ..+.||+|||+|.+..+.+ ...++.|+..++. .+..+|+++|.+..
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~~~ 142 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDPYD 142 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCccc
Confidence 1233333333321 2578999999999875221 2345566666652 23346678898888
Q ss_pred cCc-cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 578 MDR-AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 578 ld~-a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+.+ .+.+ |+ ..|.|+.|+.+++..+++..+...++..+ ..++.++. .+++|+|.+++....
T Consensus 143 ~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~------~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 143 PSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE------RSGGDLRSAINDLQA 205 (482)
T ss_pred cchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCCHHHHHHHHHH
Confidence 877 4444 44 68999999999999999998887665432 34556662 356799999887654
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=152.44 Aligned_cols=300 Identities=24% Similarity=0.235 Sum_probs=171.6
Q ss_pred hhhhhccccchhhhhhhhhccccccccccccccccchhhhhhhhhhhhhcCCCCCCcccccCCCCCCcc-cccCHHHHHH
Q 045279 56 SMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQ-DLGGMESVLE 134 (702)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~G~~~~k~ 134 (702)
+.++++++.+......+--.+..+-.|+.|+.++..-...... .. ......+.... .-.-.++ .|+|++.+|+
T Consensus 8 ~~~~CSFCGr~~~ev~~li~g~~~~IC~~Ci~~~~~i~~~~~~-~~--~~~~~~~~~p~---~i~~~L~~~ViGq~~ak~ 81 (412)
T PRK05342 8 KLLYCSFCGKSQHEVRKLIAGPGVYICDECIELCNEIIREELK-EE--AVELKELPTPK---EIKAHLDQYVIGQERAKK 81 (412)
T ss_pred CccccCCCCCChhhccccccCCCCcccchHHHHHHHHhhhhhh-cc--ccccccCCCHH---HHHHHHhhHeeChHHHHH
Confidence 4557888888655555444455556677777654433222100 00 00000011000 0001344 4899999999
Q ss_pred HHHHHhhhhccCCCcccc---cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHHH-HHHH
Q 045279 135 ELKMEVIVPLYHPQLPQW---LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEEN-IRDL 209 (702)
Q Consensus 135 ~l~~~v~~~~~~~~~~~~---~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~~-~~~~ 209 (702)
.+...+...+........ -...+..++||+||||||||++|+++|..++.+|+.++++.+.. +|.|..... +..+
T Consensus 82 ~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l 161 (412)
T PRK05342 82 VLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKL 161 (412)
T ss_pred HHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHH
Confidence 998776544332211000 01125678999999999999999999999999999999998764 577765433 3444
Q ss_pred HHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCC-CCCCC-CCCCCCCCCCeEEE
Q 045279 210 FSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQP-GDQKS-KSDASDSKPGYVLV 280 (702)
Q Consensus 210 f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~~-~~~~~~~~~~~v~v 280 (702)
+..+ ....++||||||||.+.....+. .+-....+...||..|++....+.. ++... ......-...++++
T Consensus 162 ~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilf 241 (412)
T PRK05342 162 LQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILF 241 (412)
T ss_pred HHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCcee
Confidence 4322 23467899999999998753221 1122235678899999865433322 11111 11100011123444
Q ss_pred EEecCCC---------------------------------------C-----CCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 281 IGATNRP---------------------------------------D-----AVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 281 I~atn~~---------------------------------------~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
|++.+.. + .+.|.|.. |++.++.|.+.+.+++.+
T Consensus 242 i~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~ 319 (412)
T PRK05342 242 ICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVR 319 (412)
T ss_pred eecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHH
Confidence 4211100 0 13566666 999999999999999999
Q ss_pred HHHH----hhcCc-------cc--CCc-ccHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 317 ILSV----LTRNL-------RV--EGS-FDLVKIARS--TPGFVGADLAALANKAGNLAMKRI 363 (702)
Q Consensus 317 Il~~----~~~~~-------~~--~~~-~~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r~ 363 (702)
|+.. +++++ .+ ... .-+..+++. ..++-.|.|+.++...+...+..+
T Consensus 320 Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 320 ILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9973 33221 11 111 124456654 456667888888887776665543
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=169.63 Aligned_cols=168 Identities=26% Similarity=0.339 Sum_probs=128.9
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++.++|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 456788888876554444322 1345678999999999999999999987 67888988
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 496 GPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.++..+. .+..+.|...+ ....+.+|+||
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchh----hcCCCeEEEcC
Confidence 88876 56889999999999988644 46889999999999976544333 22334444333 35688999999
Q ss_pred CCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 573 NRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 573 n~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+.......
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 9876 48999999 997 67899999999999999887665443
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-14 Score=151.30 Aligned_cols=190 Identities=22% Similarity=0.312 Sum_probs=130.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~~ 192 (702)
.+|++|+|++.+++.+...+.. + +.++.+||+|||||||||+|+++|+.+++... ..+|.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4899999999999999877722 1 23456899999999999999999999864210 01111
Q ss_pred hhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ ........++.+.+.+.. +...|++|||+|.+... ..+.|+..+++.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-----------a~naLLk~lEe~--- 146 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-----------SFNALLKTLEEP--- 146 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-----------HHHHHHHHHhcC---
Confidence 11111 001223445566555432 23459999999988532 234577777752
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la 337 (702)
++++.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...++......+ ..+..++
T Consensus 147 ----------------~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia 207 (363)
T PRK14961 147 ----------------PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA 207 (363)
T ss_pred ----------------CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4457788888888889999998 98 67999999999999999988877654333 2355567
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAG 356 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~ 356 (702)
..+.| +++++.++++.+.
T Consensus 208 ~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 208 YHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 66655 6777777766553
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=158.40 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=135.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||||||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 3899999999999999987732 1234568999999999999999999998653
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. .+...|+||||+|.|... ..+.|+..|
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHHHHHH
Confidence 33444321 122344566666543 233469999999988743 245688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. |.++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+..+++..+.....
T Consensus 144 Eep-------------------p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~ 201 (509)
T PRK14958 144 EEP-------------------PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA 201 (509)
T ss_pred hcc-------------------CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 862 4568888888888989989999 88 668999999999988888888776554333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..+++...| +.+++.++++.+.
T Consensus 202 al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 202 ALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 35567766654 7888888887664
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=157.33 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=136.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+.+|++++|++.+.+.|...+.. .+.+.++||+||||||||++|+++|+.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456899999999998887765432 2456789999999999999999999988542
Q ss_pred ---------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 491 ---------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 491 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
+++++++ ...+...++.+++.+.. ....|+||||+|.+. ...++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHH
Confidence 1222221 11245567888877753 345799999999997 67789
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~ 630 (702)
.|+..|+.. ...+++|++|+.++.+.+++.+ |+ ..+.|..++.++...+++..+++.+...+ ..++.++. .+
T Consensus 147 aLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s 219 (507)
T PRK06645 147 ALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY--KS 219 (507)
T ss_pred HHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc
Confidence 999999853 4567777788888899999988 88 58999999999999999999987765433 33566663 23
Q ss_pred CCCCHHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEAA 646 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a~ 646 (702)
+-+.+++-+.+..++
T Consensus 220 -~GslR~al~~Ldkai 234 (507)
T PRK06645 220 -EGSARDAVSILDQAA 234 (507)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 225566656665554
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=154.36 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=139.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe------------E
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------------Y 187 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------------~ 187 (702)
+-+|++++|++.+++.|...+.. -+.+.++||+|||||||||+|+++|+.+++.. .
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 34899999999999998876521 23457899999999999999999999986521 1
Q ss_pred EEechhhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 188 KISATEVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 188 ~i~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.-+|..+..+ ........++.+++.+.. +...|++|||+|.+.. ...+.|+..++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~LE 153 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKTLE 153 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 1112222111 011234566777777642 2346999999998853 23456777777
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+ .+..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...++...++........ .
T Consensus 154 e-------------------pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eA 211 (507)
T PRK06645 154 E-------------------PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEA 211 (507)
T ss_pred h-------------------cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4 24568888888888899999999 98 679999999999999999988876654443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+..+++.+.| +.+++.++++.+...
T Consensus 212 L~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 212 LRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 5667777666 888888888777544
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=154.03 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=138.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---------------- 184 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---------------- 184 (702)
-+|+||+|++.+++.|...+.. -+.++++||+||+||||||+|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 4999999999999999876621 134578999999999999999999997643
Q ss_pred --------CeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 185 --------PFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 185 --------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.++.+++++ ......++.+.+.+.. ....|++|||+|.|... ..+.|+..+
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-----------A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-----------AFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH-----------HHHHHHHHH
Confidence 234444432 1223456777766642 23469999999988632 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++..+...+.
T Consensus 141 Ee-------------------Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e 198 (491)
T PRK14964 141 EE-------------------PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE 198 (491)
T ss_pred hC-------------------CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH
Confidence 85 24568888889988899999999 98 779999999999999999988876655443
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..+++.+.| +.+++.++++.+..
T Consensus 199 AL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 199 SLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766654 88888888777654
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=142.19 Aligned_cols=186 Identities=24% Similarity=0.271 Sum_probs=130.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC------eEEEechh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP------FYKISATE 193 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~------~~~i~~~~ 193 (702)
+.+|+++.|++.+++.|...+. .+-..++|||||||||||+.|+++|..++.+ +...+.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~-------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALL-------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHh-------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 4499999999999999998772 1345679999999999999999999998752 23334444
Q ss_pred hhcccccccHHHHHHHHHHHHhh---------C-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRT---------A-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~---------~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
-....+ ...++ .-|.+.... . +.|++|||+|.|....+ ..|.+.|+..
T Consensus 99 erGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~-------- 156 (346)
T KOG0989|consen 99 ERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDF-------- 156 (346)
T ss_pred cccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhcc--------
Confidence 322111 11111 112222211 1 25999999999985543 4577888864
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPG 342 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g 342 (702)
+..+++|..||..+.|.+.+.+ |+ ..+.|+....+.....|+.++...++..+.+ +..++....|
T Consensus 157 -----------s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 -----------SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -----------ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3458999999999999999999 99 5588999999999999999998888776655 5556666555
Q ss_pred CCHHHHHHHHHHH
Q 045279 343 FVGADLAALANKA 355 (702)
Q Consensus 343 ~~~~dl~~l~~~a 355 (702)
+.|+....++.+
T Consensus 223 -dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 223 -DLRRAITTLQSL 234 (346)
T ss_pred -cHHHHHHHHHHh
Confidence 444444444433
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.6e-14 Score=150.52 Aligned_cols=220 Identities=22% Similarity=0.234 Sum_probs=139.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---------CeEEEEecccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---------ANFIHIKGPEL 499 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~~~l 499 (702)
+.+.|.+...+.|...+...+. + ..+.+++++||||||||++++.+++.+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4577888777777666544321 1 3456799999999999999999998652 57888888654
Q ss_pred ccc----------C---------cCc-hHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 500 LNK----------Y---------VGE-SELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 500 ~~~----------~---------~g~-~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.+. . .+. .......++.... ...+.||+|||+|.+.+.. ..++..|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 321 1 011 1222344554443 2456799999999997221 345666665422
Q ss_pred C-CCCCCcEEEEEecCCCC---ccCccccCCCccc-eEEEcCCCCHHHHHHHHHHHhccC---CCCCCCCHHHHhhhhcC
Q 045279 559 G-ADKRKGVFVIGATNRPD---VMDRAVLRPGRFG-KLLYVPLPTPDERGLILEALARKK---PIDDSVDLHTIAQSKFC 630 (702)
Q Consensus 559 ~-~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~~ 630 (702)
. .....++.+|+++|.++ .+++.+.+ ||. ..+.|++|+.+++..|++..++.. ....+..++.++. ++
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~--~~ 233 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA--LA 233 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH--HH
Confidence 1 12336788899999876 47777766 774 679999999999999999988631 1111222333332 11
Q ss_pred CCCCHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 631 ENLSGADLAA---MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 631 ~~~sg~dl~~---~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..+++|+|. +|+.|+..|..+.. ..|+.+|+.+|+..+.
T Consensus 234 -~~~~Gd~R~al~~l~~a~~~a~~~~~-----------~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 234 -AQEHGDARKAIDLLRVAGEIAEREGA-----------ERVTEDHVEKAQEKIE 275 (365)
T ss_pred -HHhcCCHHHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHHH
Confidence 223345554 66677666654422 2688999998887664
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=153.01 Aligned_cols=182 Identities=17% Similarity=0.154 Sum_probs=129.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+.+++++.|.+++...|...+.. ....+++|+||||||||++|+++|+++. ..++.++.++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 456789999999888877654321 1224699999999999999999999872 3467777765
Q ss_pred ccccCcCchHHHHHHHHHH---HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 499 LLNKYVGESELAVRTLFSR---AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~---a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
..+. ..++..... .. ...+.|++|||+|.+. ...++.|+..|+.... .+.+|++
T Consensus 75 ~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~~--~t~~il~ 135 (319)
T PLN03025 75 DRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYSN--TTRFALA 135 (319)
T ss_pred cccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhcccC--CceEEEE
Confidence 4321 123333222 11 1246799999999998 5667888888875433 3456667
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
||.+..+.+++.+ |+ ..+.|+.|+.++...+++..+++.++.- +..++.++ ..+++|+|.+++...
T Consensus 136 ~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~------~~~~gDlR~aln~Lq 202 (319)
T PLN03025 136 CNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAII------FTADGDMRQALNNLQ 202 (319)
T ss_pred eCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHHH
Confidence 8888888888987 88 4899999999999999999888766543 23345555 235678888887665
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=154.33 Aligned_cols=180 Identities=28% Similarity=0.409 Sum_probs=126.8
Q ss_pred CCcccccCHHHHHHH---HHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEE---LKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-+|++++|+++++.. +...+.. ....+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 389999999999766 6665521 233579999999999999999999999999999987642
Q ss_pred cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
....++.+++.+. .+.+.||||||+|.+.... .+.|+..+++
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~-----------q~~LL~~le~------------------- 118 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ-----------QDALLPHVED------------------- 118 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH-----------HHHHHHHhhc-------------------
Confidence 2234555666553 2356799999999886432 2345555553
Q ss_pred CCCeEEEEEecC--CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc--c-CC-cccHHHHHhhCCCCCHHH
Q 045279 274 KPGYVLVIGATN--RPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR--V-EG-SFDLVKIARSTPGFVGAD 347 (702)
Q Consensus 274 ~~~~v~vI~atn--~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~--~-~~-~~~~~~la~~t~g~~~~d 347 (702)
+.+++|++|+ +...+++++++ |+ ..+.|+.++.++...++...+.... . .. ...+..+++.+.| ..+.
T Consensus 119 --~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~ 192 (413)
T PRK13342 119 --GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARR 192 (413)
T ss_pred --CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHH
Confidence 2367777653 35589999999 98 7899999999999999988765431 1 11 2235566766644 5666
Q ss_pred HHHHHHHHH
Q 045279 348 LAALANKAG 356 (702)
Q Consensus 348 l~~l~~~a~ 356 (702)
+.+++..+.
T Consensus 193 aln~Le~~~ 201 (413)
T PRK13342 193 ALNLLELAA 201 (413)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=158.66 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=143.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|++++|++.++..|...+.. ...+..+||+||||||||++|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 356799999999998888776543 134455799999999999999999998743
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++ ..+...++.+...+.. ..+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 144444421 1233456666554432 356799999999886 7788999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++||.+..+.+.+.+ |+. .+.|+.|+.++....++..+++.++..+ ..+..++ ..++
T Consensus 140 LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia------~~s~ 208 (504)
T PRK14963 140 LEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA------RLAD 208 (504)
T ss_pred HHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3466777788889999999987 885 8999999999999999999887765432 2345555 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+|++.+++........ . ..|+.+++.+++...
T Consensus 209 GdlR~aln~Lekl~~~---~----------~~It~~~V~~~l~~~ 240 (504)
T PRK14963 209 GAMRDAESLLERLLAL---G----------TPVTRKQVEEALGLP 240 (504)
T ss_pred CCHHHHHHHHHHHHhc---C----------CCCCHHHHHHHHCCC
Confidence 6777766644332221 0 147777766665443
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=160.02 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=131.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++|+|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 356789999999998888776532 1335678999999999999999999988542
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.+++..- .+-..++.+.+.+. .....||||||+|.+. ...++.||.
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHH
Confidence 344433211 11233444433322 3456799999999998 778899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+.. ..++++|++||.+..+.+.+++ |+. ++.|+.++.++...+++..+.+.++.. +..++.++ .++
T Consensus 142 ~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA------~~s 210 (624)
T PRK14959 142 TLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA------RRA 210 (624)
T ss_pred Hhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 99864 3467888889888888888887 884 789999999999999988887766532 23345555 345
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
+++++.+++..-
T Consensus 211 ~GdlR~Al~lLe 222 (624)
T PRK14959 211 AGSVRDSMSLLG 222 (624)
T ss_pred CCCHHHHHHHHH
Confidence 667776666543
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=156.36 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=128.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE-------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF------------- 491 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~------------- 491 (702)
+.+|++|+|++.++..|..++... +.+..+||+||||||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 467899999999998887765431 3345579999999999999999999886531
Q ss_pred -----------EEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 492 -----------IHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 492 -----------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
+.+++++ ..+...+|.+.+.+. .....|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHH
Confidence 1111111 112344666665553 2346799999999998 8899999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ..++++|++|+.+..|.+.+++ || .++.|..++.++....++..+...++..+ ..+..++ .+++
T Consensus 143 LEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA------~~S~ 211 (944)
T PRK14949 143 LEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA------KAAN 211 (944)
T ss_pred Hhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3456677778888889889988 88 68999999999999888888876554322 2344555 2344
Q ss_pred HHHHHHHH
Q 045279 636 ADLAAMMN 643 (702)
Q Consensus 636 ~dl~~~~~ 643 (702)
|++|.+++
T Consensus 212 Gd~R~ALn 219 (944)
T PRK14949 212 GSMRDALS 219 (944)
T ss_pred CCHHHHHH
Confidence 55554443
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=162.34 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=148.1
Q ss_pred CccccccCCcccchh---hhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRH---EFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
+.+++++.|++.+.. .+...+. .....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 456788899888764 2333221 1233579999999999999999999999999988887531
Q ss_pred cCcCchHHHHHHHHHHHH-----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--
Q 045279 502 KYVGESELAVRTLFSRAR-----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-- 574 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-- 574 (702)
....++..+..+. ...+.+|||||+|.+. ...++.|+..++. ..+++|++|+.
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~----g~IiLI~aTTenp 148 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN----GTITLIGATTENP 148 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC----ceEEEEEecCCCh
Confidence 1123344444431 1345799999999987 5556777776653 45677776643
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
...+++++++ |+ .++.|++++.+++..|++..+.. ..+.- +..++.|+ .++++|+|.+++-..
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La------~~s~GD~R~lln~Le 219 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLV------DVANGDARSLLNALE 219 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHH------HhCCCCHHHHHHHHH
Confidence 3568899988 76 47899999999999999998862 12211 12234444 234556666555322
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
..+. .... .......|+.+++.+++++........+..+|+.+++.+++
T Consensus 220 ~a~~-~~~~-----~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks 268 (725)
T PRK13341 220 LAVE-STPP-----DEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS 268 (725)
T ss_pred HHHH-hccc-----CCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH
Confidence 2111 1000 01112248899999999886655666667889988888764
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=156.46 Aligned_cols=185 Identities=21% Similarity=0.233 Sum_probs=136.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. .+.+.++||+||+|+|||++|+++|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46799999999998888765532 145678999999999999999999986532
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++++++++- .+...+|.+.+.+.. ..+.|++|||+|.+. ...+|.||..
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHHH
Confidence 3455555431 234567778777653 346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+++|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+++.+..-+ ..++.++. .+ +-+-
T Consensus 140 LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~--~s-~Gsl 211 (491)
T PRK14964 140 LEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE--NS-SGSM 211 (491)
T ss_pred HhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCH
Confidence 98654 457777788888889999988 88 57899999999999999998887765433 34556663 22 2344
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++-+.+..++
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-14 Score=150.36 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=127.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------EEechhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-------KISATEV 194 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-------~i~~~~l 194 (702)
.|++|+|++.+++.|...+......+. ..+.+.++.+||+||||+|||++|+++|+.+.+... .-+|..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 699999999999999998866443222 223445788999999999999999999998754310 0001111
Q ss_pred hcc-----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 195 VSG-----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 195 ~~~-----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..+ ...-....++.+++.+.. +...|+||||+|.|.... .+.|+..|++.
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a-----------anaLLk~LEep---- 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA-----------ANALLKAVEEP---- 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH-----------HHHHHHHhhcC----
Confidence 000 011123456777776653 234699999999996432 34588888752
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~ 339 (702)
+.++++|.+|+.++.+.|.+++ |+ ..+.|+.|+.++..+++.... ... ......++..
T Consensus 145 ---------------~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~ 202 (394)
T PRK07940 145 ---------------PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARA 202 (394)
T ss_pred ---------------CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHH
Confidence 2334555555558999999999 98 789999999999887776321 221 2345567888
Q ss_pred CCCCCHHHHHHHH
Q 045279 340 TPGFVGADLAALA 352 (702)
Q Consensus 340 t~g~~~~dl~~l~ 352 (702)
+.|..++.+.-+.
T Consensus 203 s~G~~~~A~~l~~ 215 (394)
T PRK07940 203 SQGHIGRARRLAT 215 (394)
T ss_pred cCCCHHHHHHHhc
Confidence 8887776554443
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=156.75 Aligned_cols=193 Identities=24% Similarity=0.271 Sum_probs=137.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|||||++|+++|+.+++.-. .-+|
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 33899999999999999987732 133567999999999999999999999865310 0011
Q ss_pred hhhhcc----------cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG----------VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~----------~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ ........++.+++.+. .+...|+||||+|.|.. ...+.|+..|++.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEEP-- 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEEP-- 146 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHhC--
Confidence 111111 01122345667766543 23446999999987753 2345688888852
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++...++..++....+..+. .+..+
T Consensus 147 -----------------p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~I 206 (709)
T PRK08691 147 -----------------PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLL 206 (709)
T ss_pred -----------------CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 4558888899999999999988 98 668999999999999999988877655443 35667
Q ss_pred HhhCCCCCHHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~~ 358 (702)
++... .+.+++.++++.+...
T Consensus 207 a~~A~-GslRdAlnLLDqaia~ 227 (709)
T PRK08691 207 GRAAA-GSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHhC-CCHHHHHHHHHHHHHh
Confidence 76665 4888888888776543
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=157.77 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=132.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.+++.|..++... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 457899999999999888866432 345568999999999999999999988542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++++++++ ..+...+|.+.+.+. .....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHHH
Confidence 45554432 123445677776553 2346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.++..+ ..+..++. .+ +-+-
T Consensus 143 LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~--~s-~Gsl 214 (509)
T PRK14958 143 LEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR--AA-NGSV 214 (509)
T ss_pred HhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCcH
Confidence 98653 457777788888888888887 88 57889999999988888888887665432 23455552 22 2233
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
+++-+++..+
T Consensus 215 R~al~lLdq~ 224 (509)
T PRK14958 215 RDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHH
Confidence 4444455443
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=167.39 Aligned_cols=163 Identities=30% Similarity=0.332 Sum_probs=127.6
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++.+.|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 457788898888777766442 2456689999999999999999999976 47899999
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
.+.++ .+|.|+.+..++.+|+.+....++||||||+|.+.+.++..+.. .+.+.|...+ ....+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHH----hCCCcEEEEeCC
Confidence 98877 57899999999999999988788999999999999765433322 2333333333 256788999998
Q ss_pred CCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 574 RPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 574 ~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
..+ ..|+++.+ ||. .|.++.|+.++...|++....
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRS 355 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHH
Confidence 754 47899999 996 578999999999899876543
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=141.61 Aligned_cols=151 Identities=30% Similarity=0.463 Sum_probs=111.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~ 196 (702)
+.+++|.+|+++++.+ .-.+...+.. ..-..++|+||||||||+||+.|+.....+ |+.+++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 3488999999988765 2222222221 223569999999999999999999988665 66666543
Q ss_pred ccccccHHHHHHHHHHHHhh-----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT-----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.....++.+|+.+.+. ...||||||||.+....+. .||..++
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-----------~fLP~VE------------------ 247 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-----------TFLPHVE------------------ 247 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-----------cccceec------------------
Confidence 3446788999988753 4579999999988755443 2444443
Q ss_pred CCCCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 272 DSKPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 272 ~~~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.|.|.+||+| |+.-.+..+|++ |+ .++.+.....++...||..-.
T Consensus 248 ---~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 248 ---NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ---cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 3569999988 445689999999 88 778899999999999997643
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=166.10 Aligned_cols=200 Identities=26% Similarity=0.329 Sum_probs=141.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
+..++.++|.+.....+.+.+ ..+...+++|+||||||||++++.+|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 346677888887655444432 12345678999999999999999999975 6678888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+...+. .++.+.|...+ ....+.+|++
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l----~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPAL----ARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhh----hcCceEEEEe
Confidence 887775 56889999999999998865 35899999999999865433222 23344443333 3567899999
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-----HHHHh---hhhcCCCCCHHHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-----LHTIA---QSKFCENLSGADL 638 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la---~~~~~~~~sg~dl 638 (702)
|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+. +...+ ...+++.|-..-.
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 98764 48999999 996 588999999999999998877766554432 22222 2222233333444
Q ss_pred HHHHHHHHH
Q 045279 639 AAMMNEAAM 647 (702)
Q Consensus 639 ~~~~~~a~~ 647 (702)
-.++.+|+.
T Consensus 386 idlld~a~a 394 (852)
T TIGR03346 386 IDLIDEAAA 394 (852)
T ss_pred HHHHHHHHH
Confidence 456666654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=152.72 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=124.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.++..|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 457899999999998887755431 344557999999999999999999988652
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++++ ..+...+|.+.+.+. .....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 23333321 012344666665543 2356799999999998 8889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ..++++|++|+.++.|.+.+++ || ..+.|..++.++....++..+...++..+ ..+..++
T Consensus 143 LEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 143 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred HHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9864 4467777788889999999988 98 69999999999999999888876655433 2344555
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=146.97 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=122.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+-+|++++|++++++.|...+.. ....++||+||||||||++|+++|+.+. ..++.+++++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 33899999999999998876521 1224699999999999999999999973 23566666543
Q ss_pred hcccccccHHHHHHHHHHHH-------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY-------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.. ...++..+.... .+.+.|++|||+|.|....+ +.|+..++..
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~------------ 126 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIY------------ 126 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcc------------
Confidence 21 112232222211 12356999999999875432 3456666542
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 268 SDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
+....+|.+||....+.+++++ |+ ..+.|+.|+.++....+...+++.++... ..+..++....| ..+
T Consensus 127 -------~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR 195 (319)
T PLN03025 127 -------SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMR 195 (319)
T ss_pred -------cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 2235677888988899999999 88 67999999999999999988877655433 235566666554 334
Q ss_pred HHHHHH
Q 045279 347 DLAALA 352 (702)
Q Consensus 347 dl~~l~ 352 (702)
.+.+.+
T Consensus 196 ~aln~L 201 (319)
T PLN03025 196 QALNNL 201 (319)
T ss_pred HHHHHH
Confidence 333333
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=155.14 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=127.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 45789999999998887765532 134456899999999999999999998753
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.++...- -+...++.+.+.+.. ....|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHH
Confidence 2333332111 112345566555432 356799999999998 7889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.++..+ ..+..++ .+++
T Consensus 143 LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia------~~s~ 211 (546)
T PRK14957 143 LEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA------YHAK 211 (546)
T ss_pred HhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3456667777778888888877 88 69999999999999888888877665432 2344555 2345
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
+|++.+++..
T Consensus 212 GdlR~alnlL 221 (546)
T PRK14957 212 GSLRDALSLL 221 (546)
T ss_pred CCHHHHHHHH
Confidence 5666555543
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-14 Score=149.12 Aligned_cols=209 Identities=24% Similarity=0.289 Sum_probs=137.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.+++.+...+.. ....+++|+||||||||++|+++++.+. .+++.+++++
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 345688899999888877765431 1223699999999999999999999873 3577888877
Q ss_pred ccccC-------------cCc-------hHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 499 LLNKY-------------VGE-------SELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 499 l~~~~-------------~g~-------~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
+.... .+. ....++.+...... ..+.+|+|||+|.+. ....+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHHH
Confidence 54221 011 11223333322221 245799999999886 4556666
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~ 632 (702)
...++.... .+.+|++|+.+..+.+.+.+ |+ ..+.|++|+.+++..+++..+++.++.. +..++.++ .
T Consensus 146 ~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~------~ 214 (337)
T PRK12402 146 RRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA------Y 214 (337)
T ss_pred HHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------H
Confidence 666765433 23455566666677777776 77 5789999999999999999888766542 23345555 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 633 LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 633 ~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++++|++.+++.....+... ..||.+|+.+++...
T Consensus 215 ~~~gdlr~l~~~l~~~~~~~-------------~~It~~~v~~~~~~~ 249 (337)
T PRK12402 215 YAGGDLRKAILTLQTAALAA-------------GEITMEAAYEALGDV 249 (337)
T ss_pred HcCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHhCCC
Confidence 45678888877655433111 157778877776654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=156.58 Aligned_cols=179 Identities=17% Similarity=0.263 Sum_probs=130.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 457899999999998887765431 34556799999999999999999998864
Q ss_pred --------------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 490 --------------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 490 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
.++.++.++ ..+...+|.+.+.+.. ....|++|||+|.+. ...+|
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHHH
Confidence 123332221 1233457777776543 235799999999998 77899
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~ 630 (702)
.||..|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++..+ ..+..++.
T Consensus 143 aLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~---- 213 (618)
T PRK14951 143 AMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR---- 213 (618)
T ss_pred HHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----
Confidence 999999864 3566777788888888888888 88 68999999999999999988887765533 23555662
Q ss_pred CCCCHHHHHHHHH
Q 045279 631 ENLSGADLAAMMN 643 (702)
Q Consensus 631 ~~~sg~dl~~~~~ 643 (702)
+++++++.+++
T Consensus 214 --~s~GslR~al~ 224 (618)
T PRK14951 214 --AARGSMRDALS 224 (618)
T ss_pred --HcCCCHHHHHH
Confidence 23345555444
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=148.53 Aligned_cols=222 Identities=21% Similarity=0.206 Sum_probs=139.0
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc-
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK- 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~- 502 (702)
+.+.|-+...+.+...+...+ ....+.+++++||||||||++++.+++.+ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~---------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL---------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 445666666565655443321 11345678999999999999999999876 577889988654221
Q ss_pred ---------C-------cCch-HHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC
Q 045279 503 ---------Y-------VGES-ELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK 564 (702)
Q Consensus 503 ---------~-------~g~~-~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 564 (702)
. .|.+ ......+++.... ..+.||+|||+|.+....+ ...+..|+..++.... .
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~~-~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYPG-A 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccCC-C
Confidence 1 1111 2223333333332 3467999999999982211 3567777766655432 3
Q ss_pred cEEEEEecCCCC---ccCccccCCCcc-ceEEEcCCCCHHHHHHHHHHHhccCC---CCCCCCHHHHhhhhcCCCCC--H
Q 045279 565 GVFVIGATNRPD---VMDRAVLRPGRF-GKLLYVPLPTPDERGLILEALARKKP---IDDSVDLHTIAQSKFCENLS--G 635 (702)
Q Consensus 565 ~~~vI~atn~~~---~ld~a~~r~gRf-~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~~~~~s--g 635 (702)
++.+|+++|..+ .+++.+.+ || ...|.|++++.++...|++..++... .-.+..++.++. .+.+.+ .
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~--~~~~~~Gd~ 248 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD--LTAREHGDA 248 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH--HHHHhcCcH
Confidence 788888888764 56676655 66 35789999999999999998876421 112233455553 222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+.+-++|..|+..|..+.. ..|+.+|+.+|+..+.+
T Consensus 249 r~a~~ll~~a~~~a~~~~~-----------~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGS-----------RKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHcCC-----------CCcCHHHHHHHHHHHHH
Confidence 3344667677666654422 27999999999987743
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=153.64 Aligned_cols=191 Identities=20% Similarity=0.286 Sum_probs=135.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------E
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF-------------Y 187 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-------------~ 187 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||+||||||+|+++|+.+++.- .
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 3899999999999999987732 13345689999999999999999999987520 0
Q ss_pred EEechhhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 188 KISATEVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 188 ~i~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.-+|..+..+ ........++.+.+.+.. +...|++|||+|.|.... .+.|+..++
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a-----------~NaLLKtLE 149 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA-----------FNAMLKTLE 149 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH-----------HHHHHHhcc
Confidence 1112222111 001123356666666532 224599999999987432 446777777
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+ .++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...+...++.... .
T Consensus 150 E-------------------PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 150 E-------------------PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred c-------------------CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5 25568888888888889989999 98 779999999999999999888766655443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+++.+.| +.+++.++++.+..
T Consensus 208 L~~La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 208 LRLLARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 5667776665 78888877766543
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=151.34 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=131.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---------------- 184 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---------------- 184 (702)
.+|++++|++.+++.|...+.. -+.++.+||+||||||||++|+.+|+.+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4899999999999999877722 123456899999999999999999998864
Q ss_pred --------CeEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 185 --------PFYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 185 --------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.++.+++.. ......++.+++.+. .+...|+||||+|.|... ..+.|+..+
T Consensus 81 ~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-----------a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-----------SFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-----------HHHHHHHHH
Confidence 122222211 011223445554443 234569999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
++. |+.+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....+...++...+.....
T Consensus 144 Eep-------------------p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~ 201 (546)
T PRK14957 144 EEP-------------------PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ 201 (546)
T ss_pred hcC-------------------CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 862 4568888888888888888998 98 7899999999999999988877765544333
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..++..+. .+.+++.++++.+..
T Consensus 202 Al~~Ia~~s~-GdlR~alnlLek~i~ 226 (546)
T PRK14957 202 SLEYIAYHAK-GSLRDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 455666664 477777777776553
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=152.53 Aligned_cols=186 Identities=26% Similarity=0.379 Sum_probs=130.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.++++|+|++.+++.+..++..... | .++.++||+||||||||++|+++|+.++..++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 33899999999999999988854331 1 23678999999999999999999999999999999886432
Q ss_pred cccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
...+..+...+.. ..+.+|+|||+|.+...... ..+..|+..++..
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~-------~~~~aL~~~l~~~------------------ 129 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR-------GGARAILELIKKA------------------ 129 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch-------hHHHHHHHHHHcC------------------
Confidence 1223333333221 24679999999998753211 1233455555421
Q ss_pred CCCeEEEEEecCCCCCCCc-cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDP-ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~-al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l 351 (702)
+..+|.+||.+..+.+ .+++ |+ ..|.|+.|+.+++..++..++....+..+ ..+..++..+.| |++.+
T Consensus 130 ---~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~a 199 (482)
T PRK04195 130 ---KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSA 199 (482)
T ss_pred ---CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHH
Confidence 1346667888888877 6666 66 77999999999999999998876665433 346667776654 55555
Q ss_pred HHHH
Q 045279 352 ANKA 355 (702)
Q Consensus 352 ~~~a 355 (702)
+...
T Consensus 200 in~L 203 (482)
T PRK04195 200 INDL 203 (482)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=153.63 Aligned_cols=167 Identities=23% Similarity=0.304 Sum_probs=127.5
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45789999999999988876543 134566899999999999999999998742
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
+++.++++. +.+...++.+.+.+.. ..+.|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 344444321 2345567788777653 346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ...+++|++|+.++.+.+.+++ |+. .+.|+.|+.++...++...+++.++..+ ..+..++
T Consensus 143 LEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia 207 (559)
T PRK05563 143 LEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA 207 (559)
T ss_pred hcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9864 4466777778889999999988 885 7889999999999999998887765433 3345556
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=145.73 Aligned_cols=185 Identities=28% Similarity=0.389 Sum_probs=131.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-cccc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSG- 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g- 200 (702)
+-|+|++++|+.+..++.....+..+...+. -.++.++||+||||||||++|++||+.++.+|+.++++.+.. +|.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3489999999999877765433332221111 124589999999999999999999999999999999987764 6776
Q ss_pred ccHHHHHHHHHHHH------------------------------------------------------------------
Q 045279 201 ASEENIRDLFSKAY------------------------------------------------------------------ 214 (702)
Q Consensus 201 ~~~~~~~~~f~~a~------------------------------------------------------------------ 214 (702)
..+..++.+|+.|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 34455555555440
Q ss_pred -------------------------------------------------------------------------hhCCceE
Q 045279 215 -------------------------------------------------------------------------RTAPSIV 221 (702)
Q Consensus 215 -------------------------------------------------------------------------~~~p~il 221 (702)
.....|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0134599
Q ss_pred EechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecC----CCCCCCccccC
Q 045279 222 FIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATN----RPDAVDPALRR 296 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn----~~~~ld~al~r 296 (702)
||||||.++....... +-...-+...||..+++....+..+ .-...++++|++.- .|.++=|.|.-
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~---------~v~T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYG---------MVKTDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecce---------eEECCceeEEecCCcCCCChhhccHHHhC
Confidence 9999999997653222 2233446778999998765543221 11245689998763 35667788865
Q ss_pred CCCcceEEEeCCCCHHHHHHHHH
Q 045279 297 PGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 297 ~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+.++.+..++.++...||.
T Consensus 323 --R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 --RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred --ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999994
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-14 Score=149.17 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=125.4
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---------------- 490 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------------- 490 (702)
.|++|+|++.+++.|.+.+.....+. ...+...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48899999999999999887654322 22344467789999999999999999999976442
Q ss_pred -------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 491 -------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 491 -------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
+..+.+.. . .-+...+|.+++.+.. ..+.|+||||+|.+. ....|.||..|+.
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc
Confidence 11121110 0 1223457888877754 345799999999998 7778999999986
Q ss_pred CCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHH
Q 045279 560 ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGAD 637 (702)
Q Consensus 560 ~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~d 637 (702)
.. .++++|.+|+.++.+.|++++ |+ ..++|++|+.++...++... .+.. ......++ .++.|..+.-
T Consensus 144 p~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la--~~s~G~~~~A 210 (394)
T PRK07940 144 PP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAA--RASQGHIGRA 210 (394)
T ss_pred CC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHH--HHcCCCHHHH
Confidence 43 344555556668999999988 98 69999999999877777532 2222 22344455 4555655533
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=153.39 Aligned_cols=191 Identities=21% Similarity=0.292 Sum_probs=131.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. + +.++.+||+||+||||||+|+++|+.+++.- ..-+|
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 33899999999999999987732 1 2345589999999999999999999886421 00011
Q ss_pred hhhhcc---------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 192 TEVVSG---------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 192 ~~l~~~---------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..+..+ ..+ ..-..++.+.+.+. .....|++|||+|.|... ..+.|+..|++
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------A~NALLK~LEE- 144 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------GFNALLKIVEE- 144 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------HHHHHHHHHhc-
Confidence 111100 001 11233444444432 234469999999988643 34568888886
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LV 334 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~ 334 (702)
.++++++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.+..+++......+.. +.
T Consensus 145 ------------------pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~ 203 (584)
T PRK14952 145 ------------------PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYP 203 (584)
T ss_pred ------------------CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 35568899999989999999999 97 7799999999999999998887766544433 33
Q ss_pred HHHhhCCCCCHHHHHHHHHHHH
Q 045279 335 KIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 335 ~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+++. .+.+.+++.++++.++
T Consensus 204 ~Ia~~-s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 204 LVIRA-GGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHH-cCCCHHHHHHHHHHHH
Confidence 44444 4457777777777654
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=131.46 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=138.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
....+.+++|+|.+..|+.|.+.....+. -.+.+++||+|++|||||++++++..++ +..++.+...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34567999999999999999988866443 3478999999999999999999998876 56788888777
Q ss_pred hhcccccccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+. .+..+++... ...+-|||+||+.. ... + .-...|...|++. ..
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e~~-----d---~~yk~LKs~LeGg---------------le 136 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSF--EEG-----D---TEYKALKSVLEGG---------------LE 136 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCC--CCC-----c---HHHHHHHHHhcCc---------------cc
Confidence 62 3445555544 22456999999731 111 1 1124466666642 22
Q ss_pred CCCCeEEEEEecCCCCCCC---------------c--------cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 273 SKPGYVLVIGATNRPDAVD---------------P--------ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld---------------~--------al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..|.||++.+|+|+-..++ + +|.. ||.-.+.|..|+.++-.+|++.+++...+..
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3588999999999843222 1 2333 9999999999999999999999998777665
Q ss_pred cc-c----HHHHHhhCCCCCHHHHHHHHHH
Q 045279 330 SF-D----LVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 330 ~~-~----~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+. . ....+....|.||+-..++++.
T Consensus 215 ~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 215 DEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 42 2 2335566677888877776654
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=159.13 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=132.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
..+|++|+|++.+++.|...+.. -+..+.+||+||+|||||++|+.||+.+++.- .+-+|
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 34999999999999999887732 12345589999999999999999999996421 01111
Q ss_pred hhhhcc---------ccc---ccHHHHHHHHHHH----HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 192 TEVVSG---------VSG---ASEENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 192 ~~l~~~---------~~g---~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..+..+ ..+ .....++.+.+.+ ......|+||||+|.|... ..+.||+.|++.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-----------a~NaLLK~LEEp 147 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-----------GFNALLKIVEEP 147 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-----------HHHHHHHHHhCC
Confidence 111111 001 1123344443333 2345569999999999743 345688888863
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LV 334 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~ 334 (702)
+.+++||++|+.++.|-+.|++ |+ .++.|..++.++...+|..+++...+..+.. +.
T Consensus 148 -------------------P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~ 205 (824)
T PRK07764 148 -------------------PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLP 205 (824)
T ss_pred -------------------CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4568888888888889999999 98 7899999999999999998887766554333 45
Q ss_pred HHHhhCCCCCHHHHHHHHHHHH
Q 045279 335 KIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 335 ~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+++...| +.+++.++++..+
T Consensus 206 lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 206 LVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 55555554 6777777666544
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=153.92 Aligned_cols=186 Identities=20% Similarity=0.256 Sum_probs=133.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++++|++.+++.|...+.. .+.+.++||+||+|||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 356799999999999988876643 1456678999999999999999999987542
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.++.+. +.+...++.++..+.. ....|+||||+|.+. ...++.||.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 12222211 2234467777766532 345799999999987 678899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~s 634 (702)
.|+... ..+.+|++|+.+..+.+.+++ || ..+.|+.++.++...+++..+++.++.-+ ..+..|+.. + +-+
T Consensus 142 tLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~--A-~Gs 213 (709)
T PRK08691 142 TLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA--A-AGS 213 (709)
T ss_pred HHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH--h-CCC
Confidence 998643 456777788888888888876 88 57888999999999999999888765433 235566622 2 223
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
-+++.+++..++
T Consensus 214 lRdAlnLLDqai 225 (709)
T PRK08691 214 MRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-15 Score=158.23 Aligned_cols=267 Identities=21% Similarity=0.221 Sum_probs=164.3
Q ss_pred HhhhhhccccchhhhhhhhhccccccccccccccccchhhhhhhhhhhhhcCCCCCC------cccccCCCCCCcccccC
Q 045279 55 KSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLG------AEELKGKEGPRFQDLGG 128 (702)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~G 128 (702)
.+++++++.++++............. +..+.|+...+...+.+....++.....+. ..........+|++|+|
T Consensus 171 ~s~~l~vl~~~kp~~~~~~~~~~~~~-i~~~~pv~~~g~l~G~v~~~~~~~~l~~l~~~~~~~~~~~~~~a~y~f~~Iig 249 (560)
T COG3829 171 DSTLLEVLRTGKPIRDVVQTYNGNKI-IVNVAPVYADGQLIGVVGISKDVSELERLTRELEESEGLLRLKAKYTFDDIIG 249 (560)
T ss_pred CceehhhhhcCCcceeeeeeecCCce-eEeeccEecCCcEEEEEEeecchHHHHHHHHHHHHHhhhhccccccchhhhcc
Confidence 47778888888776655422211111 455555554444333333222221111111 00011244569999999
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc--------
Q 045279 129 MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-------- 197 (702)
Q Consensus 129 ~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-------- 197 (702)
-.+.+.++.+.+ +...+...+|||.|++||||..+|++|-+.. +.||+.+||+.+...
T Consensus 250 ~S~~m~~~~~~a-----------kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFG 318 (560)
T COG3829 250 ESPAMLRVLELA-----------KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFG 318 (560)
T ss_pred CCHHHHHHHHHH-----------HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhC
Confidence 999999998877 3356778899999999999999999996654 689999999987654
Q ss_pred -----cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 198 -----VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 198 -----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
|.|+....-.++|+.|..+ .||+|||..|+.. +...||..+++... ..-|+. .
T Consensus 319 ye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~-----------LQaKLLRVLQEkei-~rvG~t-------~ 376 (560)
T COG3829 319 YEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLP-----------LQAKLLRVLQEKEI-ERVGGT-------K 376 (560)
T ss_pred cCCccccccccCCCCcceeeccCC---eEEehhhccCCHH-----------HHHHHHHHHhhceE-EecCCC-------C
Confidence 4455443346788888665 9999999777644 34458888876432 222222 2
Q ss_pred CCCCeEEEEEecCCC--CCCCccccCCC---CcceEEEeCCCCHHHHHH----HHHHhhcCccc------C-Cccc-HHH
Q 045279 273 SKPGYVLVIGATNRP--DAVDPALRRPG---RFDREIVLGVPDENARVQ----ILSVLTRNLRV------E-GSFD-LVK 335 (702)
Q Consensus 273 ~~~~~v~vI~atn~~--~~ld~al~r~~---Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~------~-~~~~-~~~ 335 (702)
..+-+|+||||||.. +.+-..-.|.+ |+ .++.+..|+..+|.+ +...++.++.. . -..+ +..
T Consensus 377 ~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 377 PIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred ceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 235669999999983 23333322323 55 568889998877765 22333332211 1 1111 222
Q ss_pred -HHhhCCCCCHHHHHHHHHHHHH
Q 045279 336 -IARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 336 -la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+...++| +.|+|.+++.++..
T Consensus 456 L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 456 LLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHhCCCCc-hHHHHHHHHHHHHh
Confidence 3344566 77889988887764
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=154.45 Aligned_cols=136 Identities=25% Similarity=0.312 Sum_probs=90.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc------ccCc-Cc--hHHHH-HHHHHHHHhCCCeEEEEeC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------NKYV-GE--SELAV-RTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------~~~~-g~--~~~~~-~~~f~~a~~~~~~vl~iDE 530 (702)
...+++||-|.||+|||++..++|+..|..+++|+.++-. +.++ ++ ++-.+ ..-|-.|++ .+..+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 4567899999999999999999999999999999987532 2222 22 11111 223445555 567899999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhC------------CCCCCcEEEEEecCCC------CccCccccCCCccceEE
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDG------------ADKRKGVFVIGATNRP------DVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~~vI~atn~~------~~ld~a~~r~gRf~~~i 592 (702)
+.-.. +.++.-|=..||. +.-+.+..|++|-|.. ..|+..|+. ||- ++
T Consensus 1620 iNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1620 INLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 98766 4444433333332 2345567777777753 378889988 995 67
Q ss_pred EcCCCCHHHHHHHHHHHhc
Q 045279 593 YVPLPTPDERGLILEALAR 611 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~~ 611 (702)
++.-++.++...|...+..
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 7777666666655555443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=159.34 Aligned_cols=185 Identities=20% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|++||+.+.+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 356899999999999988776542 1344558999999999999999999988541
Q ss_pred -------------EEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 491 -------------FIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 491 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
|+.++.... .+...+|.+.+.+ ....+.|+||||+|.|. ...+|.|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaL 140 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNAL 140 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHH
Confidence 233322111 1233455554433 23467899999999999 7889999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~ 632 (702)
|..|+... ..+++|++|+.++.|-+.+.+ |+ .++.|..++.++...++...+++.++..+. .+..++. .+ +
T Consensus 141 LK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~--~s-g 212 (824)
T PRK07764 141 LKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR--AG-G 212 (824)
T ss_pred HHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-C
Confidence 99998643 467777788888888888887 88 588999999999999999988877654332 2344542 22 2
Q ss_pred CCHHHHHHHHHHH
Q 045279 633 LSGADLAAMMNEA 645 (702)
Q Consensus 633 ~sg~dl~~~~~~a 645 (702)
-+-+++.+++...
T Consensus 213 GdlR~Al~eLEKL 225 (824)
T PRK07764 213 GSVRDSLSVLDQL 225 (824)
T ss_pred CCHHHHHHHHHHH
Confidence 2334444444443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=151.70 Aligned_cols=222 Identities=20% Similarity=0.203 Sum_probs=139.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPE 498 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~ 498 (702)
+.|.+-+...+.|..++...+. +..+...++++|+||||||++++.+..++ ...++.|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 3456666666666655544331 22233335699999999999999998765 25678999865
Q ss_pred ccccC----------------cC-chHHHHHHHHHHHH--hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 499 LLNKY----------------VG-ESELAVRTLFSRAR--TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 499 l~~~~----------------~g-~~~~~~~~~f~~a~--~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
+...+ .| .+...+..+|.... .....||+|||||.|.... ..++..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 43321 01 12234556665542 2235699999999998532 455665555433
Q ss_pred CCCCCcEEEEEecCC---CCccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhccCC-CCCCCCHHHHhhhhcCCCCC
Q 045279 560 ADKRKGVFVIGATNR---PDVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARKKP-IDDSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 560 ~~~~~~~~vI~atn~---~~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~~~~~s 634 (702)
....+++||+++|. ++.+++.+.+ ||.. .|.|++|+.+++..||+..+.... .-.+..++.+|.. . ...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk--V-Aq~ 971 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK--V-ANV 971 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh--h-hhc
Confidence 23457899999986 5567787766 6653 488999999999999999887532 2223334555531 1 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSV 684 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 684 (702)
+||+|.++. ++..|.... ....|+.+|+.+|+.++..+.
T Consensus 972 SGDARKALD-ILRrAgEik----------egskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 972 SGDIRKALQ-ICRKAFENK----------RGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred CCHHHHHHH-HHHHHHhhc----------CCCccCHHHHHHHHHHHHhhh
Confidence 578887654 222232211 012688999999988775443
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=152.22 Aligned_cols=186 Identities=23% Similarity=0.296 Sum_probs=135.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 44999999999999999987732 2335669999999999999999999988532
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.++++. +.....++.+.+.+.. +...|++|||+|.|... ..+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-----------a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-----------AFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----------HHHHHHHH
Confidence 22332211 1233456667666542 33469999999988632 34567777
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++ .|.++++|.+|+.+..+.+.+++ |+ ..+.|..|+.++...++...++..++..+.
T Consensus 143 LEe-------------------pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~ 200 (559)
T PRK05563 143 LEE-------------------PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYED 200 (559)
T ss_pred hcC-------------------CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 775 24568888888889999999999 98 678999999999999999888776654443
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..++....| +.+++.++++.+..
T Consensus 201 ~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 201 EALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766665 77777777766543
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-14 Score=154.00 Aligned_cols=168 Identities=20% Similarity=0.283 Sum_probs=123.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|+++.|.+.+++.+..++.. .+.+.++||+||+|+|||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 356789999999998888775532 244567999999999999999999998743
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.++++. ..+...+|.+...+.. ....|++|||+|.+. ....+.||.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 223333221 1223446777665543 245799999999997 667899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
.|+.. ...+++|++|+.+..+.+++++ |+. .+.|++++.++...++...+.+.+..- +..+..++
T Consensus 142 tLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 142 TLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99864 3467788888889999999988 885 899999999999999998887765432 23344555
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=152.56 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=123.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.+++.|..++.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45799999999999988876642 1 344557999999999999999999987531
Q ss_pred ------------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHH
Q 045279 491 ------------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554 (702)
Q Consensus 491 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 554 (702)
++.++++.. .+...++.+.+.+. .....|+||||+|.+. ...+|.||
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHHH
Confidence 223332211 12344555555443 2356799999999998 77899999
Q ss_pred HhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 555 IELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 555 ~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
..|+.. ..++++|++|+.++.+.+++.+ |+ .++.|..++.++....+...+++.+..-+ ..+..++
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia 206 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI 206 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999854 4577888888888999999988 87 58999999999999999988887765433 2334444
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=150.72 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=129.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.++..+...+.. ...+..+||+||||+|||++|+++|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999998887776532 134567899999999999999999998743
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.+++... . +-..++.+.+.+. ...+.|+||||+|.+. ...++.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHH
Confidence 2333332111 1 1233444433322 2467899999999998 667899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++||.+..+.+++.+ |+. .+.|+.++.++...++...+++.++.-+ ..++.++ .++
T Consensus 144 ~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~------~~s 212 (451)
T PRK06305 144 TLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA------RAA 212 (451)
T ss_pred HhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 998643 466777788888889999988 884 7899999999999999888877664432 3345555 345
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
++|++.+++..-
T Consensus 213 ~gdlr~a~~~Le 224 (451)
T PRK06305 213 QGSLRDAESLYD 224 (451)
T ss_pred CCCHHHHHHHHH
Confidence 667777666543
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=154.94 Aligned_cols=187 Identities=24% Similarity=0.295 Sum_probs=131.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE---ec----
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI---KG---- 496 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i---~~---- 496 (702)
.+..|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.--.. .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3568999999999998887766431 3456689999999999999999999875421000 00
Q ss_pred ------cccc--ccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC
Q 045279 497 ------PELL--NKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK 564 (702)
Q Consensus 497 ------~~l~--~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 564 (702)
.++. ......+...+|.+.+.+.. ..+.|++|||+|.+. ...++.||..|+.. ..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEEP--P~ 147 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEEP--PK 147 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhcC--CC
Confidence 0110 00001234557788777654 345799999999998 67899999999864 45
Q ss_pred cEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 565 GVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 565 ~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
.+++|++|+.++.|.+.+++ ||. ++.|.+++.++...++...+.+.++..+. .+..++. .++++++.+++
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~------lS~GslR~Als 218 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK------LSSGSLRDALS 218 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCCHHHHHH
Confidence 67777888889999999988 884 89999999999999998888776654332 2455552 34445554444
Q ss_pred H
Q 045279 644 E 644 (702)
Q Consensus 644 ~ 644 (702)
.
T Consensus 219 l 219 (725)
T PRK07133 219 I 219 (725)
T ss_pred H
Confidence 3
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=150.21 Aligned_cols=184 Identities=17% Similarity=0.247 Sum_probs=130.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34899999999999999877621 1334679999999999999999999998531
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.++++. ...-..++.+...+.. +...|++|||+|.|... ..+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-----------A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-----------AWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----------HHHHHHHH
Confidence 22222211 1122345555554432 23459999999988532 23568888
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS- 330 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~- 330 (702)
|++ .++.+++|.+|+.+..+.+.+++ |+ ..+.|..|+.++...++...+...+....
T Consensus 143 LEE-------------------Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~ 200 (605)
T PRK05896 143 LEE-------------------PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIED 200 (605)
T ss_pred HHh-------------------CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 885 24568888888889999999999 98 57999999999999999988776554332
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+..++..+.| +++++.++++.+
T Consensus 201 eal~~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 201 NAIDKIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 235556666655 666666666653
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=149.08 Aligned_cols=184 Identities=26% Similarity=0.317 Sum_probs=129.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+.+|++|+|++.+++.|...+.. -+.++.+||+|||||||||+|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 44899999999999999887732 1234557999999999999999999998531
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. ...+.|++|||+|.+.. ..++.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHHHH
Confidence 33333321 112233455444432 23456999999987642 2345677777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
+.. +.++++|.+|+.+..+.+.+++ |+ ..+.|..|+.++....+...++...+....
T Consensus 141 Eep-------------------~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~ 198 (504)
T PRK14963 141 EEP-------------------PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE 198 (504)
T ss_pred HhC-------------------CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 642 3447888888888999999998 88 679999999999999999888776654433
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+..++..+.| ..+++.++++.+
T Consensus 199 Al~~ia~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 199 ALQLVARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 35566666665 555665555543
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=147.08 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=123.4
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|++++|.+.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456899999999999888775532 1345678999999999999999999987432
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.+++.+ ..+...++.++..+.. ..+.|++|||+|.+. ...++.|+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 33333321 1233456777776653 234699999999987 667888999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
.++.. ...+++|++|+.++.+.+++.+ |+ ..+.|++|+.++...++...+++.+..-+ ..+..++
T Consensus 140 ~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 140 TLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88754 3466777788888888888887 88 47899999999999999999887665432 3344455
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=153.35 Aligned_cols=191 Identities=23% Similarity=0.265 Sum_probs=133.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------E-Eech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-------K-ISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-------~-i~~~ 192 (702)
-+|++|+|++.+++.+...+.. -+.++.+||+|||||||||+|+.+|+.+++... . -+|.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3899999999999999877732 123456899999999999999999999865210 0 0011
Q ss_pred hhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ ........++.+++.+.. +...|++|||+|.|... ..+.|+..+++
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-----------a~naLLK~LEe---- 145 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-----------AFNAMLKTLEE---- 145 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-----------HHHHHHHHHhC----
Confidence 11110 001223456667766542 23459999999988632 34568888875
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la 337 (702)
.++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++...+.... .+..++
T Consensus 146 ---------------pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la 207 (527)
T PRK14969 146 ---------------PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLA 207 (527)
T ss_pred ---------------CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 24568888888888888888988 88 779999999999998888887665544333 345566
Q ss_pred hhCCCCCHHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~~ 357 (702)
+.+.| +.+++.++++.+..
T Consensus 208 ~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 208 RAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHcCC-CHHHHHHHHHHHHH
Confidence 66554 77888888776654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-12 Score=144.97 Aligned_cols=224 Identities=22% Similarity=0.323 Sum_probs=142.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEE
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIH 493 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~ 493 (702)
....|++++|.+...+.+...+. ...+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45678899999887776543321 1335679999999999999999998765 357899
Q ss_pred Eecccccc-------cCcCchHH----HHHHHHHH----------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHH
Q 045279 494 IKGPELLN-------KYVGESEL----AVRTLFSR----------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQ 552 (702)
Q Consensus 494 i~~~~l~~-------~~~g~~~~----~~~~~f~~----------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 552 (702)
+++..+.. .+.|.... ..+..++. ......++|||||++.+. ...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 99876521 11121100 01111111 112356799999999988 667777
Q ss_pred HHHhhhCCC--------------------------CCCcEEEEEec-CCCCccCccccCCCccceEEEcCCCCHHHHHHH
Q 045279 553 LLIELDGAD--------------------------KRKGVFVIGAT-NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLI 605 (702)
Q Consensus 553 ll~~l~~~~--------------------------~~~~~~vI~at-n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~i 605 (702)
|+..|+... ....+++|++| +.++.+++++.+ ||. .++|++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 777775421 12235666554 568889999887 996 678999999999999
Q ss_pred HHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 606 LEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 606 l~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
++..+.+.....+.+ ++.++ .+ .+.|+..-+++..+...++.+..... .......|+.+|++++++.-+
T Consensus 362 l~~~a~~~~v~ls~eal~~L~--~y--s~~gRraln~L~~~~~~~~~~~~~~~---~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIA--RY--TIEGRKAVNILADVYGYALYRAAEAG---KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHH--HC--CCcHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeeECHHHHHHHhCCCc
Confidence 999988755432222 23333 22 34666666666656544433322100 111235799999999998765
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=154.72 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=124.2
Q ss_pred CCCcccccCHHHHHH---HHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLE---ELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~---~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+.+|++++|++.++. .+...+. .....+++|+|||||||||+|+++++.++.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 348999999999985 3444331 1233579999999999999999999999999988887532
Q ss_pred ccccccHHHHHHHHHHHH-----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAY-----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+ ...++..+..+. .....+|||||||.+....+ +.|+..++.
T Consensus 89 ---~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~----------------- 135 (725)
T PRK13341 89 ---G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVEN----------------- 135 (725)
T ss_pred ---h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcC-----------------
Confidence 1 122333343331 12456999999998864322 235555542
Q ss_pred CCCCCeEEEEEecCC--CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-------cccCCcc-cHHHHHhhCC
Q 045279 272 DSKPGYVLVIGATNR--PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-------LRVEGSF-DLVKIARSTP 341 (702)
Q Consensus 272 ~~~~~~v~vI~atn~--~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-------~~~~~~~-~~~~la~~t~ 341 (702)
+.+++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+.. ..+.... .+..+++...
T Consensus 136 ----g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~ 208 (725)
T PRK13341 136 ----GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN 208 (725)
T ss_pred ----ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC
Confidence 34778877643 4578999998 86 67999999999999999987762 2222222 3566777664
Q ss_pred CCCHHHHHHHHHHHH
Q 045279 342 GFVGADLAALANKAG 356 (702)
Q Consensus 342 g~~~~dl~~l~~~a~ 356 (702)
| +.|.+.++++.++
T Consensus 209 G-D~R~lln~Le~a~ 222 (725)
T PRK13341 209 G-DARSLLNALELAV 222 (725)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 6777777777655
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-14 Score=146.62 Aligned_cols=185 Identities=29% Similarity=0.402 Sum_probs=132.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-cccc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSG- 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g- 200 (702)
..|+|++++|+.+..++....++..+...+.. ..+.++||+||||||||++|+.||+.++.+|+.++++.+.. +|.|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 34999999999999888654433322221111 13589999999999999999999999999999999998875 6777
Q ss_pred ccHHHHHHHHHHHH------------------------------------------------------------------
Q 045279 201 ASEENIRDLFSKAY------------------------------------------------------------------ 214 (702)
Q Consensus 201 ~~~~~~~~~f~~a~------------------------------------------------------------------ 214 (702)
..+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 33445555555551
Q ss_pred ------------------------------------------------------------------------hhCCceEE
Q 045279 215 ------------------------------------------------------------------------RTAPSIVF 222 (702)
Q Consensus 215 ------------------------------------------------------------------------~~~p~il~ 222 (702)
.....|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred echhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecC----CCCCCCccccCC
Q 045279 223 IDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATN----RPDAVDPALRRP 297 (702)
Q Consensus 223 iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn----~~~~ld~al~r~ 297 (702)
|||||.++...++. .+-...-+...||..+++....+..+ .-...+|++|++.- .|.++-|.|.-
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~---------~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYG---------MVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecce---------eEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 99999999765322 22333446778999998755433221 11245689998763 35677788866
Q ss_pred CCcceEEEeCCCCHHHHHHHHH
Q 045279 298 GRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 298 ~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+.++.+..++.++..+||.
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999994
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=150.82 Aligned_cols=191 Identities=21% Similarity=0.307 Sum_probs=133.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE---Eechhh--
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK---ISATEV-- 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---i~~~~l-- 194 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|||||++|+++|+.+.+.-.. -.|...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 44999999999999999987732 1335668999999999999999999998653210 011110
Q ss_pred --------h--cccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 195 --------V--SGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 195 --------~--~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
. .+........++.+.+.+.. +...|++|||+|.|... ..+.|+..|++
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-----------A~NALLKtLEE------ 144 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-----------AFNALLKTLEE------ 144 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------HHHHHHHHhhc------
Confidence 0 00001123446666666542 34469999999988632 35568888886
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS 339 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~ 339 (702)
.|+.+++|.+|+.++.|.+.+++ |+ .++.|..|+.++...++...+...++....+ +..++..
T Consensus 145 -------------PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 145 -------------PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred -------------CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 25568888889889999999999 99 5799999999999999988777665543333 5556666
Q ss_pred CCCCCHHHHHHHHHHHH
Q 045279 340 TPGFVGADLAALANKAG 356 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~ 356 (702)
+.| +.+++..+++.+.
T Consensus 209 S~G-slR~AlslLekl~ 224 (725)
T PRK07133 209 SSG-SLRDALSIAEQVS 224 (725)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 555 6677666666543
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=151.51 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=134.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++++++.|...+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4899999999999999987732 1 345668999999999999999999998642
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++.+ ......++.+.+.+.. ....|++|||+|.|... ..+.|+..|
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-----------a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-----------AFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----------HHHHHHHHH
Confidence 22222211 1123455666665532 23359999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .++++++|.+|+.+..|.+.+++ |+ ..+.|..++.++....+...++...+..+.
T Consensus 144 Ee-------------------pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~ 201 (576)
T PRK14965 144 EE-------------------PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA 201 (576)
T ss_pred Hc-------------------CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 86 24568899999999999999999 88 679999999999998888888776654333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..+++...| +.+++.++++.+..
T Consensus 202 al~~la~~a~G-~lr~al~~Ldqlia 226 (576)
T PRK14965 202 ALALVARKGDG-SMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35556666665 66777777665543
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=143.05 Aligned_cols=295 Identities=21% Similarity=0.198 Sum_probs=169.4
Q ss_pred hhhhccccchhhhhhhhhccccccccccccccccchhhhhhhh---hhhhhc--CCCCCCcccccCCCCCCc-ccccCHH
Q 045279 57 MLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMK---KEESVK--GGMGLGAEELKGKEGPRF-QDLGGME 130 (702)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~-~~i~G~~ 130 (702)
.+++++|.+......+--.+..+-.|+.|+.+++.-....... ..+... ....+.... .-.-.+ +-++|++
T Consensus 7 ~~~c~fc~~~~~~~~~~~~~~~~~ic~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~L~~~ViGQe 83 (413)
T TIGR00382 7 TLYCSFCGKSQDEVRKLIAGPGVYICDECIELCHDILEEELGTRKESKEYEEEFELSYLPTPK---EIKAHLDEYVIGQE 83 (413)
T ss_pred CeecCCCCCChhhcccccCCCCCcCCCchHHHHHHHHHHHhhhccccccchhhccccCCCCHH---HHHHHhcceecCHH
Confidence 3467888887655555555655678888988776443221100 000000 000010000 000022 3469999
Q ss_pred HHHHHHHHHhhhhccCCCc----ccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccH-
Q 045279 131 SVLEELKMEVIVPLYHPQL----PQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASE- 203 (702)
Q Consensus 131 ~~k~~l~~~v~~~~~~~~~----~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~- 203 (702)
++++.+...+......-.. ....++ ....++||+||||||||++|+++|..++.+|..++++.+.. +|.|...
T Consensus 84 ~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e 163 (413)
T TIGR00382 84 QAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVE 163 (413)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHH
Confidence 9999998766332222110 000011 13568999999999999999999999999999999988753 5777643
Q ss_pred HHHHHHHHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 204 ENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 204 ~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
..+..++..+ ....++||||||||.+.....+. .+-.+..+.+.||..|++....+.+.++... ...
T Consensus 164 ~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~------~~~ 237 (413)
T TIGR00382 164 NILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKH------PYQ 237 (413)
T ss_pred HHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccc------cCC
Confidence 3334443322 23356799999999998753321 1112235677788888754332222111110 012
Q ss_pred eEEEEEecCCC---------------------------C-----------------------CCCccccCCCCcceEEEe
Q 045279 277 YVLVIGATNRP---------------------------D-----------------------AVDPALRRPGRFDREIVL 306 (702)
Q Consensus 277 ~v~vI~atn~~---------------------------~-----------------------~ld~al~r~~Rf~~~i~~ 306 (702)
+.++|.|+|.. + .+.|+|.. |++.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 35555555540 0 13466666 99999999
Q ss_pred CCCCHHHHHHHHHHh----hcCc-------cc--CCcc-cHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVL----TRNL-------RV--EGSF-DLVKIARS--TPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 307 ~~p~~~er~~Il~~~----~~~~-------~~--~~~~-~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
.+.+.+++.+|+... .+++ .+ .... .+..+++. ...+-.|.|+.+++......+..
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999998752 2221 11 1111 24456654 45566778888877766554443
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=149.10 Aligned_cols=183 Identities=20% Similarity=0.242 Sum_probs=126.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+.+|++|+|++.+++.|...+.. + +-...+||+||||||||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 34899999999999999877732 1 224679999999999999999999998653
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.+++.. ...-..++.+.+.+. .+...|+||||+|.|... ..+.|+..
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-----------a~naLLk~ 142 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-----------AFNALLKT 142 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-----------HHHHHHHH
Confidence 23333211 011123333332221 234569999999988632 24567887
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++. ++++++|++||.+..+.+.+++ |+ .++.|..++.++...++...+.......+.
T Consensus 143 LEEP-------------------~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~ 200 (624)
T PRK14959 143 LEEP-------------------PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDP 200 (624)
T ss_pred hhcc-------------------CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 7752 3458888899988889889998 98 578999999999999998877766543333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+..+++.+.| +.+++.++++.
T Consensus 201 eal~lIA~~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 201 AAVRLIARRAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 35556666554 55555555543
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=145.25 Aligned_cols=186 Identities=23% Similarity=0.267 Sum_probs=127.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc----
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL---- 499 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l---- 499 (702)
.+..|++++|.+.+++.+...+.. + ..+.++|||||||+|||++|+++|+.+..+.....+..+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 356789999999998877775532 1 445789999999999999999999987542111100000
Q ss_pred --cccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 500 --LNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 500 --~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
.+.....+...++.+++.+.. ..+.|+||||+|.+. ...++.|+..++.. ...+++|++|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~~--~~~~~~Il~~~ 146 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEEP--PAHAIFILATT 146 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhCC--CCceEEEEEeC
Confidence 011111234567777776643 245799999999887 55678888888753 34456667788
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
.+..+.+++.+ |+. .+.|+.|+.++...++...+.+.++. .+..++.++. .+++|++.+++
T Consensus 147 ~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~------~~~gdlr~~~~ 208 (367)
T PRK14970 147 EKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQ------KADGALRDALS 208 (367)
T ss_pred CcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------hCCCCHHHHHH
Confidence 88888898877 774 78999999999999999888876653 2334555552 24456555555
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=152.99 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=125.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 45799999999999888876542 1445668999999999999999999987532
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++.. ..+...++.+.+.+.. ....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHHH
Confidence 33333221 1234457777766643 345799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ..++++|++|+.++.|.+.+++ |+ ..+.|..++.++....+...+++.++..+ ..+..++
T Consensus 143 LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 143 LEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred HHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9864 4567788888999999999988 88 48899999999988888888887665432 3345555
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-13 Score=145.66 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=121.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+++||||||||||+|++++++++ +..++.+++.++...++.........-|..... .+.+|+|||++.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 4568999999999999999999987 566888998887665443322111122222222 5679999999998754
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
+ ..+..|+..++........+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 122333333333222233455544444443 6788877 996 58999999999999999999887
Q ss_pred CCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 613 KPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 613 ~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++.. +..++.+|.+ . .=+.++|..+++.....+.... ..|+.+.+.+++..+
T Consensus 296 ~~~~l~~e~l~~ia~~--~-~~~~R~l~~~l~~l~~~~~~~~------------~~it~~~~~~~l~~~ 349 (450)
T PRK00149 296 EGIDLPDEVLEFIAKN--I-TSNVRELEGALNRLIAYASLTG------------KPITLELAKEALKDL 349 (450)
T ss_pred cCCCCCHHHHHHHHcC--c-CCCHHHHHHHHHHHHHHHHhhC------------CCCCHHHHHHHHHHh
Confidence 55432 3345666632 1 2245677777776654433221 157777777777754
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=149.12 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=126.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|+++.|++.+...+...+.. ...+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45789999999999888776632 1344557899999999999999999987531
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ..+...++.+.+.+.. ..+.|++|||+|.+. ...++.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHH
Confidence 12221110 1223345666655543 346799999999997 6778899999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.++.+.+++.+ |+. .+.|++++.++...++...++..++..+ ..+..++ .+++
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La------~~s~ 211 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA------QASE 211 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3345666677778888888887 884 7999999999999999999888765433 2344555 2344
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
++++.+++..
T Consensus 212 G~lr~al~~L 221 (486)
T PRK14953 212 GGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHH
Confidence 5555555543
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=147.21 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=149.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
+-+|++++|++.+.+.|...+.. -+-.+.+||.||.||||||+||.+|+.+++.- ....|
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 44899999999999999988733 23457799999999999999999999997542 11222
Q ss_pred hhhhcc----------cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG----------VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~----------~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ -....-..++.+.+++. .+.+.|++|||+|.|.. ..++.||..+++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE--- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE--- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc---
Confidence 233322 11223456777777764 23456999999998863 456778888886
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
.|.+|.+|.||+.+..+++.+++ |+ .++.|...+.++....+..++.+..+..+.+ +..+
T Consensus 146 ----------------PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~i 206 (515)
T COG2812 146 ----------------PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLI 206 (515)
T ss_pred ----------------CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 57789999999999999999999 98 6699999999999999999999888877665 4455
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++...| +.||...+++.+....
T Consensus 207 a~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 207 ARAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHcCC-ChhhHHHHHHHHHHcc
Confidence 655555 8899999999887654
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=139.30 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=121.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+.+|++++|.+.+++.+...+.. ....+++|+||||||||++|+++++.+. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 34799999999999999876621 1223699999999999999999999884 35678888775
Q ss_pred hcccc-------------cc-------cHHHHHHHHHHHHh-----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 195 VSGVS-------------GA-------SEENIRDLFSKAYR-----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 195 ~~~~~-------------g~-------~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
..... +. ....++.+...... ..+.+|+|||+|.+.... ...|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~~~L~ 146 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------QQALR 146 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------HHHHH
Confidence 42210 00 01122333322222 234699999999875321 22355
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..++... ....+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...++...++......
T Consensus 147 ~~le~~~-------------------~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (337)
T PRK12402 147 RIMEQYS-------------------RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDY 204 (337)
T ss_pred HHHHhcc-------------------CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5555321 124566666666677788888 87 6789999999999999998887766543
Q ss_pred c-ccHHHHHhhCCCCCHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~ 350 (702)
. ..+..++..+.| +.+.+..
T Consensus 205 ~~~al~~l~~~~~g-dlr~l~~ 225 (337)
T PRK12402 205 DDDGLELIAYYAGG-DLRKAIL 225 (337)
T ss_pred CHHHHHHHHHHcCC-CHHHHHH
Confidence 3 346667776643 4444433
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=142.24 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=110.8
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
...+..++++.|.+.++..+...+.. + ..+..++|+||||+|||++|+++++.++.+++.+++++ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 33456789999999998887765531 1 23455666999999999999999999998999998876 2
Q ss_pred cCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 502 KYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
. +......+........ ...++||||||+|.+.. ......|...++... .++.+|++||.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 2 2211111222111111 13578999999998831 233444444565433 45677889999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
++.+ ||. .+.|+.|+.+++..+++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9988 995 78999999999988776543
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=146.34 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=130.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.+...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999988776543 1344567999999999999999999988542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ..+...+|.+...+.. ..+.|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 22222211 1234457777776643 345799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.++.+.+.+++ |+ ..+.|+.++.++....+...+++.++..+ ..+..++. .+ +-+.
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~--~s-~Gsl 214 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR--AA-AGSM 214 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCH
Confidence 9864 3566777788888888888877 88 68999999999999888888876655432 23455552 22 2233
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++.+++..++
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 44445554443
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=145.20 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=125.6
Q ss_pred CCCCCccccc-CHHH--HHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GMES--VLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~--~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |... +...+.+... .| + ...++++||||||||||+|++++++++ +..++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~----~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE----NP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh----Cc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4566899954 4332 3343433321 11 1 233679999999999999999999987 4568899
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+..........-|..... .+.+|+|||++.+.+... ....++..++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~l~~------------ 242 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER---------TQEEFFHTFNALHE------------ 242 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHH------------
Confidence 99887655433322111122322222 467999999998865421 11234444443322
Q ss_pred CCCCCCCeEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|.. +++++++ ||. .++.+..|+.++|..|++..+......-..+ +..++....|
T Consensus 243 -----~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~- 314 (450)
T PRK00149 243 -----AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS- 314 (450)
T ss_pred -----CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-
Confidence 122456666555554 7789998 985 4789999999999999999887655443333 5556655554
Q ss_pred CHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGN 357 (702)
Q Consensus 344 ~~~dl~~l~~~a~~ 357 (702)
+.+.|..++.....
T Consensus 315 ~~R~l~~~l~~l~~ 328 (450)
T PRK00149 315 NVRELEGALNRLIA 328 (450)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777776665543
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=126.04 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=140.5
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
.....+.++++.|++..|+.|.+.....+ .-.+..++||+|+.|||||+++|++..+. +..+|++...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 33456789999999999998877554442 22467899999999999999999999876 7788999877
Q ss_pred cccccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn~ 574 (702)
++.. +-.+++..+.. .+-|||+|++..=.. +.-...|-..|+|. ....|++|.+|+|+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe~~----------d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLSFEEG----------DTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCCCCCC----------cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 7643 44566665533 457999998652111 34456677778874 56789999999998
Q ss_pred CCccCccc----------cCCC-----------ccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhh--hhcC
Q 045279 575 PDVMDRAV----------LRPG-----------RFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQ--SKFC 630 (702)
Q Consensus 575 ~~~ld~a~----------~r~g-----------Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~--~~~~ 630 (702)
.+.+...+ ++|+ ||...|.|.+|+.++..+|++.++.+.++..+ .++..-|. ....
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 65443322 1222 99999999999999999999999998777654 23332222 1223
Q ss_pred CCCCHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNE 644 (702)
Q Consensus 631 ~~~sg~dl~~~~~~ 644 (702)
.+.||+-.++.|+.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 46788877776653
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=144.49 Aligned_cols=186 Identities=24% Similarity=0.290 Sum_probs=133.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
.+|++++|++.+++.|...+.. | +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4899999999999999987722 2 344567999999999999999999987421
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ...-..++.+...... +...|++|||+|.|... ..+.|+..+
T Consensus 79 ~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~-----------A~NALLK~L 141 (535)
T PRK08451 79 SALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE-----------AFNALLKTL 141 (535)
T ss_pred HHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----------HHHHHHHHH
Confidence 22222111 0112455666554321 23359999999988643 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. |.++.+|.+|+.+..+.+.+++ |+ .++.|..++.++....+...+...+.....
T Consensus 142 EEp-------------------p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~ 199 (535)
T PRK08451 142 EEP-------------------PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE 199 (535)
T ss_pred hhc-------------------CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 863 4457788888888999999999 97 689999999999999998888776554333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+..++....| +.+++.++++.+...
T Consensus 200 Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 200 ALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 35566666555 888888888776644
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-13 Score=147.31 Aligned_cols=191 Identities=20% Similarity=0.284 Sum_probs=132.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------e-EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------F-YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~-~~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. + +.++.+||+||||+|||++|+++|+.+++. + ..-+|
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 33899999999999999987732 1 234669999999999999999999998642 1 01111
Q ss_pred hhhhcc-------cccc---cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSGA---SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g~---~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ ..|. .-..++.+.+.+. .+...|++|||+|.|... ..+.|+..+++
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-----------a~naLLK~LEe--- 145 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-----------AFNALLKTIEE--- 145 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-----------HHHHHHHhhcc---
Confidence 111111 1111 1234455544332 344569999999988632 34567777774
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
.|..+++|++|+.+..+.+++++ |+ ..+.|..++.++..+++...+.......+.+ +..+
T Consensus 146 ----------------pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lL 206 (563)
T PRK06647 146 ----------------PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWI 206 (563)
T ss_pred ----------------CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24568888888888899999999 98 5799999999999999988877665543333 5556
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
++...| +.+++.++++.+.
T Consensus 207 a~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 207 AYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666555 7777777776654
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=142.89 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=129.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------e-EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------F-YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~-~~i~~ 191 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+++. + ...+|
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 34899999999999999887722 1234568999999999999999999998631 1 01122
Q ss_pred hhhhccc----------ccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSGV----------SGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~~----------~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+. .......++.+.+.+. .+.+.|++|||+|.|... ..+.|+..+++.
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-----------a~naLLk~LEep-- 146 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-----------AFNALLKTLEEP-- 146 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-----------HHHHHHHHHhcC--
Confidence 2221110 0111233445544443 234469999999988532 235577777642
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
++.+++|.+|+.++.+.+++++ |+ ..+.|..|+.++...++...++...+..+.+ +..+
T Consensus 147 -----------------p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~L 206 (486)
T PRK14953 147 -----------------PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLL 206 (486)
T ss_pred -----------------CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3446777777778888899998 88 5799999999999999998888766544333 5556
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+.| +.+++.++++.+.
T Consensus 207 a~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 207 AQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666554 6677777766654
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-13 Score=148.97 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=129.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
....|+++.|.+.++..|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3567899999999998887765431 234578999999999999999999988652
Q ss_pred -------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 491 -------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 491 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
++.++. ..+.+...+|.+++.+.. ....|+||||+|.+. ....+.|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naL 141 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNAL 141 (620)
T ss_pred HHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHH
Confidence 222221 122345677888877653 345799999999998 7789999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~ 632 (702)
|..|+.. ...+++|++|+.++.+-+.+.+ |+ ..+.|+.++.++....+...+.+.+..-+ ..+..++ .
T Consensus 142 LK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La------~ 210 (620)
T PRK14948 142 LKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA------Q 210 (620)
T ss_pred HHHHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH------H
Confidence 9999853 3557777788888888888887 88 57889999988888888777776544322 2344555 2
Q ss_pred CCHHHHHHHHHH
Q 045279 633 LSGADLAAMMNE 644 (702)
Q Consensus 633 ~sg~dl~~~~~~ 644 (702)
+++++++.+++.
T Consensus 211 ~s~G~lr~A~~l 222 (620)
T PRK14948 211 RSQGGLRDAESL 222 (620)
T ss_pred HcCCCHHHHHHH
Confidence 344555555443
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=129.80 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=120.1
Q ss_pred CCCccccc--CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 120 GPRFQDLG--GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~--G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
..+|++++ +.+.+++.+.+.+. ...+.+++|+||||||||++|+++++.+ +.+++++++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 44788886 46667777776541 2346789999999999999999999876 467889999887
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.... ..++... ..+.+|+|||+|.+..... +...+...++....
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~----------------- 121 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVRE----------------- 121 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHH-----------------
Confidence 5321 2333322 2345999999998864321 11223333332211
Q ss_pred CCeEEEEEecCCCCCCC---ccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHH
Q 045279 275 PGYVLVIGATNRPDAVD---PALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADL 348 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld---~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl 348 (702)
.+..+|+.++..+..++ +.+.+ |+ ...+.+++|+.+++..+++............ .+..++.. -+.+.+++
T Consensus 122 ~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L 198 (226)
T TIGR03420 122 AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSL 198 (226)
T ss_pred cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHH
Confidence 11134444343444332 67777 66 3678999999999999998876655443333 35566664 45588899
Q ss_pred HHHHHHHHH
Q 045279 349 AALANKAGN 357 (702)
Q Consensus 349 ~~l~~~a~~ 357 (702)
..+++.+..
T Consensus 199 ~~~l~~~~~ 207 (226)
T TIGR03420 199 MALLDALDR 207 (226)
T ss_pred HHHHHHHHH
Confidence 988887654
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=145.73 Aligned_cols=189 Identities=20% Similarity=0.284 Sum_probs=119.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+....+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4568999999999999999999977 5678889888876544322111 1112222222 357999999999875
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
++ .....++..++........+||.++..|. .+++.+.+ ||. ..+.+++|+.++|..|++..++
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 32 12223333333221223335554444454 46677777 886 4799999999999999999988
Q ss_pred cCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 612 KKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 612 ~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
..+..- +..++.+|.. . .-+.++|..+++.....|.... ..||.+.+.++|..
T Consensus 283 ~~~~~l~~e~l~~ia~~--~-~~~~r~l~~~l~~l~~~a~~~~------------~~it~~~~~~~L~~ 336 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKN--I-RSNVRELEGALNRLLAYASLTG------------KPITLELAKEALKD 336 (405)
T ss_pred HcCCCCCHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHH
Confidence 766543 3345667732 2 3366888888887765543321 14566566655554
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=141.14 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=124.9
Q ss_pred CCCCCccc-ccCHHHH--HHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQD-LGGMESV--LEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~-i~G~~~~--k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++ ++|.+.. ...+.+.. ..+ + ...++++||||||||||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~----~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVA----ENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHH----hCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 35668999 5564443 22233222 111 1 234679999999999999999999887 5678899
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+..........-|..... .+.+|+|||++.+.+... ....++..++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~~~~------------ 230 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKER---------TQEEFFHTFNALHE------------ 230 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHH------------
Confidence 98887554332211111111222222 356999999998865321 11234444443321
Q ss_pred CCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|. .+++++++ ||. ..+.|+.|+.++|..|++..++........+ +..++....+
T Consensus 231 -----~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~- 302 (405)
T TIGR00362 231 -----NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS- 302 (405)
T ss_pred -----CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-
Confidence 12245555555554 46788988 885 4789999999999999999888766544433 5556765554
Q ss_pred CHHHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGNLA 359 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a 359 (702)
+.++|..++......+
T Consensus 303 ~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 303 NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777776654433
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=147.98 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=123.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.++..|...+.. ...+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 56799999999999988876642 1345568999999999999999999987542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++.. ..+-..++.+.+.+. ...+.|++|||+|.+. ...++.||..
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHh
Confidence 22222111 122345666665443 2456799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+. ....+++|++|+.+..+.+++.+ |+. .+.|.+++.++...+++..+...++..+ ..+..++
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa 207 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA 207 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 985 34567777888888889899888 885 7899999999999999888877665432 3345555
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=137.16 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=110.0
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSG 200 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g 200 (702)
-+|++++|.+.+++.+...+.. + ..++.+||+||||+|||++++++++.++.+++.+++++ .. ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 3899999999999999877731 1 23456677999999999999999999999999999876 11 11
Q ss_pred ccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 201 ASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 201 ~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
.....+........ ...+.+++|||+|.+.... ....|...++.. ++++.
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~----------~~~~L~~~le~~-------------------~~~~~ 133 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD----------AQRHLRSFMEAY-------------------SKNCS 133 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccCHH----------HHHHHHHHHHhc-------------------CCCce
Confidence 11122222211111 1356799999998873211 112344445532 23478
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR 323 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~ 323 (702)
+|.+||.+..+.+++++ || ..+.++.|+.+++..++..+..
T Consensus 134 ~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 134 FIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred EEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 88899999999999999 99 6789999999999988775443
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=138.60 Aligned_cols=183 Identities=22% Similarity=0.311 Sum_probs=127.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++++|++.+++.+.+.+.. -+.++.+||+||||+|||++|+++++.+...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4899999999999999987732 1234679999999999999999999987532
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++.. ......++.+++.+.. +...|++|||+|.+... ..+.|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-----------~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-----------AFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-----------HHHHHHHHH
Confidence 22222211 1123345667666542 23359999999887532 244577777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+.++++|.+|+.+..+.+.+++ |+ ..+.|+.|+.++...++...++......+.
T Consensus 142 e~-------------------~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~ 199 (355)
T TIGR02397 142 EE-------------------PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE 199 (355)
T ss_pred hC-------------------CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 64 24457888888888888899998 88 678999999999999999888776554332
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+..++..+.| +++.+.+.++.+
T Consensus 200 a~~~l~~~~~g-~~~~a~~~lekl 222 (355)
T TIGR02397 200 ALELIARAADG-SLRDALSLLDQL 222 (355)
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHH
Confidence 34556666554 555555555443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-12 Score=143.69 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=124.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKI 189 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i 189 (702)
+.+|++|+|.+.+++.+...+. ...+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4589999999999998876552 1234579999999999999999998765 3578999
Q ss_pred echhhhc-------ccccccHHH----HHHHHHH----------HHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHH
Q 045279 190 SATEVVS-------GVSGASEEN----IRDLFSK----------AYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQL 248 (702)
Q Consensus 190 ~~~~l~~-------~~~g~~~~~----~~~~f~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~l 248 (702)
+|..+.. .+.|..... ....+.. .......+|||||++.|.... ...|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~-----------Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL-----------QNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH-----------HHHH
Confidence 9876521 111211110 0000100 001124599999998876433 2345
Q ss_pred HHHHhhhccccCCCCCCCC---------CCCCCCCCCeEEEEEec-CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 045279 249 MTCMDESHRLVQPGDQKSK---------SDASDSKPGYVLVIGAT-NRPDAVDPALRRPGRFDREIVLGVPDENARVQIL 318 (702)
Q Consensus 249 l~~ld~~~~~~~~~~~~~~---------~~~~~~~~~~v~vI~at-n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il 318 (702)
+..++.....+..++.... .......+..+++|++| +.++.+++++++ || ..+.+++++.++...|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~-~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RC-AEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ce-eEEEeCCCCHHHHHHHH
Confidence 6666543221111110000 00111234456777655 557889999998 99 46889999999999999
Q ss_pred HHhhcCcccCCcccH-HHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 319 SVLTRNLRVEGSFDL-VKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.........+. ..++..+. .++...+.+..+..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 998876544333333 33444332 44544444444443
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=144.51 Aligned_cols=190 Identities=23% Similarity=0.247 Sum_probs=134.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE-----------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----------- 189 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----------- 189 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||+|+|||++|+++|+.+++.....
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 3899999999999999987732 23456799999999999999999999986542111
Q ss_pred --echhhhccc----------ccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 190 --SATEVVSGV----------SGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 190 --~~~~l~~~~----------~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
+|..+..+. .......++.+++.+.. ....|++|||+|.|... ..+.|+..|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~-----------a~naLLKtLE 157 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA-----------AFNALLKTLE 157 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-----------HHHHHHHHHH
Confidence 111121110 01123456677766542 23469999999988632 3456888887
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+. ++.+.+|.+|+.++.+.+.+++ |+ ..+.|..|+.++...++...++........ .
T Consensus 158 eP-------------------p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eA 215 (598)
T PRK09111 158 EP-------------------PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA 215 (598)
T ss_pred hC-------------------CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 63 4557888888888888889998 98 679999999999999999888776655443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+++.+.| +.+++.++++.+.
T Consensus 216 l~lIa~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 216 LALIARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4555666555 6777777766553
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=136.66 Aligned_cols=222 Identities=23% Similarity=0.285 Sum_probs=146.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-----EEEEecccccccC--
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-----FIHIKGPELLNKY-- 503 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~~~-- 503 (702)
+.+-++....+...+... +....|.++++|||||||||.+++.+++++... ++.|||-.+.+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~---------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPA---------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHH---------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 445555555555543332 233455679999999999999999999988443 8999997665432
Q ss_pred -------------cCchH-HHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 504 -------------VGESE-LAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 504 -------------~g~~~-~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
.|.+. ...+.+++.... ...-||++||+|.|..+.+ +++..|+...... ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 12222 223333333333 3456888999999996542 5777777665544 567889
Q ss_pred EEecCCC---CccCccccCCCcc-ceEEEcCCCCHHHHHHHHHHHhccCCC---CCCCCHHHHhhhhcCCCCCHHHHH--
Q 045279 569 IGATNRP---DVMDRAVLRPGRF-GKLLYVPLPTPDERGLILEALARKKPI---DDSVDLHTIAQSKFCENLSGADLA-- 639 (702)
Q Consensus 569 I~atn~~---~~ld~a~~r~gRf-~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~la~~~~~~~~sg~dl~-- 639 (702)
|+.+|.. +.+|+.+.+ ++ ...|.||+++.+|...|++...+.... -.+.-++.+|. . .+..++|.|
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~--~-~a~~~GDAR~a 234 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAA--L-VAAESGDARKA 234 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHH--H-HHHcCccHHHH
Confidence 9999886 478888865 44 345899999999999999998775322 12223344442 1 133444666
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHH
Q 045279 640 -AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSEL 687 (702)
Q Consensus 640 -~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~ 687 (702)
.+|+.|+..|.++... .++.+|+.+|...+......+
T Consensus 235 idilr~A~eiAe~~~~~-----------~v~~~~v~~a~~~~~~~~~~~ 272 (366)
T COG1474 235 IDILRRAGEIAEREGSR-----------KVSEDHVREAQEEIERDVLEE 272 (366)
T ss_pred HHHHHHHHHHHHhhCCC-----------CcCHHHHHHHHHHhhHHHHHH
Confidence 4777888888776543 788999999976666554443
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=139.96 Aligned_cols=188 Identities=25% Similarity=0.342 Sum_probs=126.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---------EEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF---------YKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~---------~~i~~ 191 (702)
-+|++|+|++.+++.+...+.. -+.++.+||+||||+|||++|+++|+.+.+.- ...+|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 4899999999999999887732 12346799999999999999999999885421 11111
Q ss_pred hhhhcc-------cccc---cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSGA---SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g~---~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ +.|. .-..++.+.+... .....|++|||+|.+... ..+.|+..+++.
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-----------~~n~LLk~lEep-- 148 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-----------AFNSLLKTLEEP-- 148 (451)
T ss_pred HHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-----------HHHHHHHHhhcC--
Confidence 111111 1111 1123333332222 245679999999988632 235677777752
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
++.+++|++|+.+..+.+.+++ |+ ..+.|..++.++...++...++..+...+. .+..+
T Consensus 149 -----------------~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 149 -----------------PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred -----------------CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3457888888888999999999 98 679999999999999998887765544333 35566
Q ss_pred HhhCCCCCHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANK 354 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~ 354 (702)
+..+.| +.+.+.++++.
T Consensus 209 ~~~s~g-dlr~a~~~Lek 225 (451)
T PRK06305 209 ARAAQG-SLRDAESLYDY 225 (451)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 766654 55555555554
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-13 Score=132.77 Aligned_cols=200 Identities=26% Similarity=0.254 Sum_probs=128.5
Q ss_pred ccccchhhhhhhhhccccccccccccccccchhhhhhhhhh-hhhcCCCCCCcccccCCCCCCcccccCHHHHHHHHHHH
Q 045279 61 SYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKE-ESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKME 139 (702)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~ 139 (702)
++|.++....++.-.+..+-.|+.|+.+++.-..+...... .......+-+.++. ..--+-++|++.+|+.|.-+
T Consensus 1 SFCgksq~~v~kliagp~v~ICdeCielc~~ii~ee~~~~~~~~~~~~lPtP~eik----~~Ld~YVIGQe~AKKvLsVA 76 (408)
T COG1219 1 SFCGKSQHEVRKLIAGPGVYICDECIELCNDIIREELKEALDEKELSELPTPKEIK----AHLDEYVIGQEQAKKVLSVA 76 (408)
T ss_pred CCCCccHHHHHHHhcCCCceehHHHHHHHHHHHHHhhhhhccchhhccCCChHHHH----HHhhhheecchhhhceeeee
Confidence 35566666666677888889999999988766544433222 10000111111110 00123479999999877644
Q ss_pred hhhhccCCCcc-cccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHHH-HHHHHHHHH-
Q 045279 140 VIVPLYHPQLP-QWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEEN-IRDLFSKAY- 214 (702)
Q Consensus 140 v~~~~~~~~~~-~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~~-~~~~f~~a~- 214 (702)
|....++-... ..-.+ -...||||+||+|||||.||+.||+.+++||..-+++.|.. +|+|+.-.+ +..+++.|.
T Consensus 77 VYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaady 156 (408)
T COG1219 77 VYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADY 156 (408)
T ss_pred ehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHccc
Confidence 43222111100 00011 14578999999999999999999999999999999999865 588887555 455555543
Q ss_pred ---hhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 215 ---RTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 215 ---~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
+....|++|||||.+.....+. .+-++.-+.+.||..+++.-..+.+.++
T Consensus 157 dV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGG 212 (408)
T COG1219 157 DVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGG 212 (408)
T ss_pred CHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCC
Confidence 2345699999999999766542 2334456778899999988777765433
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-12 Score=135.53 Aligned_cols=203 Identities=22% Similarity=0.263 Sum_probs=125.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~ 191 (702)
..-++++|.++.++.|...+...+. + ..+.+++|+||||||||++++.+++.+. ..+++++|
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456899999999999987744322 1 2346799999999999999999988753 46788888
Q ss_pred hhhhcc----------cc---------cc-cHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 192 TEVVSG----------VS---------GA-SEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 192 ~~l~~~----------~~---------g~-~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
...... .. +. .......++.... ...+.||+|||+|.+....+ .++..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence 653221 10 10 1122333444333 23467899999999973211 12223332
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCc-
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNL- 325 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~- 325 (702)
..+.. .....++.+|+++|.+. .+++++.+ ||. ..+.|++|+.++..+|+...+...
T Consensus 155 ~~~~~----------------~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~ 216 (365)
T TIGR02928 155 ARSNG----------------DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAF 216 (365)
T ss_pred ccccc----------------CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 21100 00124589999998875 68888888 774 578999999999999999877521
Q ss_pred c-cCCccc-HH---HHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 326 R-VEGSFD-LV---KIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 326 ~-~~~~~~-~~---~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
. .....+ +. .++..+.| ..+.+..+|+.|...+
T Consensus 217 ~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a 254 (365)
T TIGR02928 217 YDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIA 254 (365)
T ss_pred cCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 1 111111 22 23333344 3445555666665544
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=145.22 Aligned_cols=190 Identities=21% Similarity=0.189 Sum_probs=132.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEe---------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK--------- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~--------- 495 (702)
+..|++++|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 45789999999999988876642 145668999999999999999999998864321111
Q ss_pred ----c--------ccccccC--cCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 496 ----G--------PELLNKY--VGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 496 ----~--------~~l~~~~--~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
| .++.... ...+...+|.+++.+.. ..+.|+||||+|.+. ...++.||..|
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKtL 156 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKTL 156 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHHH
Confidence 0 0111000 01124457778776653 346799999999998 77899999999
Q ss_pred hCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHH
Q 045279 558 DGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGA 636 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~ 636 (702)
+... ..+++|++|+.++.+.+.+.+ |+ ..+.|..++.++...++...+++.+..-+ ..++.++. .+ +-+-+
T Consensus 157 EePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~--~a-~Gdlr 228 (598)
T PRK09111 157 EEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR--AA-EGSVR 228 (598)
T ss_pred HhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCHH
Confidence 8643 456677777888888888877 88 58999999999999999998887765433 33455552 22 22445
Q ss_pred HHHHHHHHH
Q 045279 637 DLAAMMNEA 645 (702)
Q Consensus 637 dl~~~~~~a 645 (702)
++.+.+..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=142.11 Aligned_cols=166 Identities=21% Similarity=0.276 Sum_probs=112.3
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEech
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISAT 192 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~ 192 (702)
-+.|.|.++.+++|...+...+. +..+.+.++|+|+||||||++++.+.+++ ...+++|+|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 47899999999999988754443 22233345699999999999999998776 2567899996
Q ss_pred hhhcc----------c------cc-ccHHHHHHHHHHHHh--hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 193 EVVSG----------V------SG-ASEENIRDLFSKAYR--TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 193 ~l~~~----------~------~g-~~~~~~~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.+... . .| .....+..+|..... ....||+|||||.|....+ .+ |+..++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DV---LYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KV---LFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HH---HHHHHH
Confidence 43222 1 11 112334555655422 2346999999999986421 12 333333
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCC---CCCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR---PDAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~---~~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
.... ..+.+.|||++|. ++.++|++++ ||.. .+.|++|+.+++.+||...+...
T Consensus 895 ~~~~----------------s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 895 WPTK----------------INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred Hhhc----------------cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 2110 1345999999987 5578899988 7643 48899999999999999887754
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=133.04 Aligned_cols=133 Identities=26% Similarity=0.312 Sum_probs=97.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc------cccccCcCchHHHH-H-------------------HHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP------ELLNKYVGESELAV-R-------------------TLFS 516 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~------~l~~~~~g~~~~~~-~-------------------~~f~ 516 (702)
+.+++|+||||||||++|+++|..++.+++.+++. ++++.|.+.....+ . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46789999999999999999999999999999765 44444443222111 1 1112
Q ss_pred HHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------------CCCcEEEEEecCCCC-----c
Q 045279 517 RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------------KRKGVFVIGATNRPD-----V 577 (702)
Q Consensus 517 ~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~~~vI~atn~~~-----~ 577 (702)
.|.. .+.+|+|||++.+. .++++.|+..|+... .+.++.||+|+|... .
T Consensus 101 ~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2333 45799999999988 778888888876421 123567899999752 5
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
+++++++ || ..+.++.|+.++-.+|++...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 6888988 99 589999999998889998765
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=141.72 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=128.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46799999999999888776532 1 34556799999999999999999998732
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++- .+-..++.+...+.. ....|++|||+|.+. ...++.||..
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 2333332210 123456666655432 245799999999998 8889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+.+|++|+.+..+.+++.+ |+ .++.|.+++.++....+...+++.++.. +..+..++. .++
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~------~s~ 209 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR------SGN 209 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 9976 3456667777888999999988 87 5889999999999999988888766543 234455552 344
Q ss_pred HHHHHHHHH
Q 045279 636 ADLAAMMNE 644 (702)
Q Consensus 636 ~dl~~~~~~ 644 (702)
+|+|.+++.
T Consensus 210 GdlR~alnl 218 (535)
T PRK08451 210 GSLRDTLTL 218 (535)
T ss_pred CcHHHHHHH
Confidence 555555443
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=137.42 Aligned_cols=190 Identities=20% Similarity=0.269 Sum_probs=127.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh-----
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV----- 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l----- 194 (702)
+.+|++++|++.+++.+...+.. | ..++++|||||||+|||++|+++++.+..+.....+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 34899999999999999887732 1 335689999999999999999999988642211100000
Q ss_pred -hcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 195 -VSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 195 -~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
...........+..+++.+.. +.+.|++|||+|.+... ..+.|+..+++.
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le~~-------------- 135 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLEEP-------------- 135 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHhCC--------------
Confidence 000111223456666765532 23469999999877532 234566666541
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADL 348 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl 348 (702)
+...++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+...+...+ ..+..++..+.| +.+.+
T Consensus 136 -----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~ 206 (367)
T PRK14970 136 -----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDA 206 (367)
T ss_pred -----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHH
Confidence 3346677778888889999988 87 57899999999999999888877665433 335556665544 55555
Q ss_pred HHHHHHH
Q 045279 349 AALANKA 355 (702)
Q Consensus 349 ~~l~~~a 355 (702)
.+.++..
T Consensus 207 ~~~lekl 213 (367)
T PRK14970 207 LSIFDRV 213 (367)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=139.54 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=118.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++||||+|+|||+|++++++.+ +..++.+++.++...+...........|.... ...+||+|||++.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 4579999999999999999999876 67788888877654432211111112233332 2567999999999874321
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-C---CccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-P---DVMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~---~~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
..+.+-.++..+- ..... +|+|||. | ..+++.+.+ ||. ..+.+++|+.++|..|++..+...
T Consensus 220 ------~qeelf~l~N~l~---~~~k~-IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 ------TQEEFFHTFNSLH---TEGKL-IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred ------hHHHHHHHHHHHH---HCCCc-EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 1222222222221 12233 4445554 4 357788887 995 788999999999999999998876
Q ss_pred CCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 614 PIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMA-ALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 614 ~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~-a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++.-+. -++.++.+. .-+.+.|.++++..+.. |.... . ...|+.+++.++++..
T Consensus 288 ~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~~~a~~~~-~---------~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 288 SIRIEETALDFLIEAL---SSNVKSLLHALTLLAKRVAYKKL-S---------HQLLYVDDIKALLHDV 343 (445)
T ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh-h---------CCCCCHHHHHHHHHHh
Confidence 654333 345566321 12346666666655432 22222 1 1268899999998864
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=137.56 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=133.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.++..+...+.. ....+++|+||||||||++++++++.+. .+++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 346788899999888877765421 1123589999999999999999999872 3455555443
Q ss_pred ccccCcCchHHHHHHHH-HHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLF-SRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f-~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+ ..+.. ..+.+|+|||+|.+. ...++.|+..++.... .+.+|+++
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~~--~~~lIl~~ 139 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYSQ--NTRFILSC 139 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCCC--CCeEEEEe
Confidence 211 11122222 22221 245699999999987 4455667777765443 34566677
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|.+..+.+++.+ |+. .+.|++++.++...+++.++.+.++.- +..++.++ ..+++|++.+++.....+..
T Consensus 140 ~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~------~~~~gd~r~~~~~l~~~~~~ 210 (319)
T PRK00440 140 NYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY------YVSEGDMRKAINALQAAAAT 210 (319)
T ss_pred CCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHHHHHHHc
Confidence 877777777777 775 689999999999999999988766532 23455555 23566777776655432221
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
. ..||.+++.++.....
T Consensus 211 ~-------------~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 211 G-------------KEVTEEAVYKITGTAR 227 (319)
T ss_pred C-------------CCCCHHHHHHHhCCCC
Confidence 1 1577777777665443
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=125.85 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
.+..+|++++|.+... +...+.... .......++||||||||||+|++++|+++ +....+++....
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~~---------~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKNF---------IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHHh---------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 4456999998765432 111221110 11122357999999999999999999886 345555555432
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
. .....++.... ...+|+|||++.+.+.... ...|...++.... .
T Consensus 79 ~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~---------~~~l~~l~n~~~~----------------~ 123 (229)
T PRK06893 79 Q--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEEW---------ELAIFDLFNRIKE----------------Q 123 (229)
T ss_pred h--------hhhHHHHhhcc--cCCEEEEeChhhhcCChHH---------HHHHHHHHHHHHH----------------c
Confidence 1 11122333332 3469999999988654221 1224444443321 1
Q ss_pred CCeEEEEEecCCCCCCC---ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVD---PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAA 350 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld---~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~ 350 (702)
.+.++|++++..|..++ |.+++..++...+.++.|+.+++.+|++..+....+....+ +..+++...| +.+.+..
T Consensus 124 ~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~ 202 (229)
T PRK06893 124 GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFD 202 (229)
T ss_pred CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHH
Confidence 12245666666666554 88988333345889999999999999998876655544444 4556666554 5555555
Q ss_pred HHHH
Q 045279 351 LANK 354 (702)
Q Consensus 351 l~~~ 354 (702)
++..
T Consensus 203 ~l~~ 206 (229)
T PRK06893 203 ALDL 206 (229)
T ss_pred HHHH
Confidence 5554
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-12 Score=125.79 Aligned_cols=198 Identities=26% Similarity=0.363 Sum_probs=116.7
Q ss_pred CCCCccccc-C--HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEe
Q 045279 119 EGPRFQDLG-G--MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKIS 190 (702)
Q Consensus 119 ~~~~~~~i~-G--~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~ 190 (702)
+..||++++ | .+-+...+...... + -...++++||||+|+|||.|++++++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~----~-------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN----P-------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS----T-------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc----C-------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456899985 5 33334444432211 1 1134579999999999999999998875 56788999
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
+.++...+..........-|..... ...+|+||+++.+.... .+...|...++....
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~~~------------- 128 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ---------RTQEELFHLFNRLIE------------- 128 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH---------HHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch---------HHHHHHHHHHHHHHh-------------
Confidence 8887655433222111112222222 44699999999887432 123345555554432
Q ss_pred CCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCcccH-HHHHhhCCCCC
Q 045279 271 SDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFDL-VKIARSTPGFV 344 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~-~~la~~t~g~~ 344 (702)
.++.+||++-..|. .+++.+.+ ||. ..+.+..|+.+.|.+|++..+....+.-..++ ..+++..++ +
T Consensus 129 ----~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~ 201 (219)
T PF00308_consen 129 ----SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-D 201 (219)
T ss_dssp ----TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-S
T ss_pred ----hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-C
Confidence 23355555545555 46788888 875 47899999999999999998887776655554 445555443 7
Q ss_pred HHHHHHHHHHHHH
Q 045279 345 GADLAALANKAGN 357 (702)
Q Consensus 345 ~~dl~~l~~~a~~ 357 (702)
.+.|..+++....
T Consensus 202 ~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 202 VRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-12 Score=141.17 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=128.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY------------ 187 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~------------ 187 (702)
+.+|++|+|++.+++.|...+.. -+-++.+||+||+||||||+|+.+|+.+.+.-.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 33899999999999999876621 234566999999999999999999999976310
Q ss_pred ----EEechhhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 188 ----KISATEVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 188 ----~i~~~~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
.-+|..+..+ +.+ .....++.+.+.+. .+...|++|||+|.|... ..+.|+
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~naLL 148 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AFNAFL 148 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HHHHHH
Confidence 0011111111 111 11244555555442 234469999999988632 244688
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..+++. ++.+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++......
T Consensus 149 K~LEeP-------------------p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I 206 (620)
T PRK14954 149 KTLEEP-------------------PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQI 206 (620)
T ss_pred HHHhCC-------------------CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 888752 4457777777778889999998 88 7799999999999888888777655433
Q ss_pred c-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+ ..+..++..+.| +.+++.+.++...
T Consensus 207 ~~eal~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 207 DADALQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 3 335566666655 5665555555433
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=139.32 Aligned_cols=198 Identities=22% Similarity=0.288 Sum_probs=121.7
Q ss_pred CCCCCccccc-CHHHH--HHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GMESV--LEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~~--k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |-... ...+.+.+ ..| + ..++++||||||||||+|++++++.+ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~----~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVA----KNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHH----hCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4667999987 63332 22222222 111 1 14579999999999999999999986 4578889
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+.......-..-|.......+.+|+|||++.+.+.... ...++..++....
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~---------q~elf~~~n~l~~------------ 225 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGV---------QTELFHTFNELHD------------ 225 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHH---------HHHHHHHHHHHHH------------
Confidence 9888765543222111111233333345789999999988643211 1223333333221
Q ss_pred CCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|. .+.+++.+ ||. ..+.+.+|+.+.|..|++..+....+....+ +..++....+
T Consensus 226 -----~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~- 297 (440)
T PRK14088 226 -----SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD- 297 (440)
T ss_pred -----cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-
Confidence 12345555555555 46678888 884 4678999999999999998887655443333 4556655554
Q ss_pred CHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAG 356 (702)
Q Consensus 344 ~~~dl~~l~~~a~ 356 (702)
+.+.|..++....
T Consensus 298 ~~R~L~g~l~~l~ 310 (440)
T PRK14088 298 NLRRLRGAIIKLL 310 (440)
T ss_pred CHHHHHHHHHHHH
Confidence 6677776666543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=146.41 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=119.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3567899999999999887765431 344567999999999999999999987532
Q ss_pred ------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHH
Q 045279 491 ------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554 (702)
Q Consensus 491 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 554 (702)
++.++.+. ..+...++.+.+.+.. ....|+||||+|.+. ...++.||
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 12222211 1223345565554432 346799999999998 67789999
Q ss_pred HhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 555 IELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 555 ~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
..|+... ..+++|++|+..+.+.+.+.+ |+. .+.|+.++..+...++...+.+.++..+ ..+..++
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9998654 456667777777778888877 774 7889999999999999888877665432 2345555
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=138.07 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=124.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK------------ 188 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~------------ 188 (702)
.+|++|+|++.+++.|...+.. + +.++.+||+|||||||||+|+++|+.+.+.-..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 3899999999999999876631 1 345669999999999999999999998653100
Q ss_pred ----Eechhhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 189 ----ISATEVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 189 ----i~~~~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
-+|..+..+ +.+ .....++.+.+.+. .....|+||||+|.+... ..+.|+.
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~~~LLk 149 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AFNAFLK 149 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HHHHHHH
Confidence 011111111 111 11244555554442 223459999999988632 2335677
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS 330 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~ 330 (702)
.+++. ++..++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++.......
T Consensus 150 ~LEep-------------------~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~ 207 (397)
T PRK14955 150 TLEEP-------------------PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVD 207 (397)
T ss_pred HHhcC-------------------CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 66642 3346777777777888889988 88 57899999999999888888776554333
Q ss_pred c-cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 F-DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~-~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
. .+..++..+.| +.+.+.+.++.+
T Consensus 208 ~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 208 ADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3 35556666654 566666655544
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-12 Score=142.71 Aligned_cols=188 Identities=26% Similarity=0.327 Sum_probs=129.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE----Ee---c--
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK----IS---A-- 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~----i~---~-- 191 (702)
-+|++++|++.+++.|...+.. + +-..++||+||+|+|||++|+++|+.+++.... -. |
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 4899999999999999987732 1 234679999999999999999999998652110 00 0
Q ss_pred -hhhh----------cccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 192 -TEVV----------SGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 192 -~~l~----------~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
..+. ..........++.+++.+.. +...|+||||+|.|... ..+.|+..+++
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-----------a~naLLK~LEe-- 147 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-----------AFNALLKTLEE-- 147 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH-----------HHHHHHHHHhc--
Confidence 1110 01112334567777766642 23469999999988632 34568888885
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHH
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVK 335 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~ 335 (702)
.++.+++|++|+.+..+-+.+++ |+ ..+.|..++.++....+..++.+...... ..+..
T Consensus 148 -----------------Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 148 -----------------PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred -----------------CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 24568888888888889999999 98 67999999999888888877766544332 23556
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANK 354 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~ 354 (702)
++..+.| ..+++.++++.
T Consensus 208 La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 208 VAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHHHcCC-CHHHHHHHHHH
Confidence 6666655 44555555543
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=133.78 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=116.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--cccccHHH----------HHHHHHHHHhhCCceEEe
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGASEEN----------IRDLFSKAYRTAPSIVFI 223 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~~~~----------~~~~f~~a~~~~p~il~i 223 (702)
...++|||.||||||||++++.+|..++.+++.++++..... ..|..... ..+.+..|.. .+.+|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 345789999999999999999999999999999998876544 33332110 1223444433 4568999
Q ss_pred chhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------------CCC
Q 045279 224 DEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------------AVD 291 (702)
Q Consensus 224 DEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------------~ld 291 (702)
||+|...+. +...|...++.-..+...+. ......+..++||||+|+.+ .++
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~-----~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQ-----NRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCC-----ceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 999877543 23345555653222222111 11111234599999999854 468
Q ss_pred ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc----cHHHHHhh----------CCCCCHHHHHHHHHHHH
Q 045279 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF----DLVKIARS----------TPGFVGADLAALANKAG 356 (702)
Q Consensus 292 ~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~----~~~~la~~----------t~g~~~~dl~~l~~~a~ 356 (702)
++++. ||..++.+++|+.++-.+|+............. .+..++.. ..+.+.|.+..+++.+.
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHH
Confidence 89999 997677999999999999998765433211000 12222222 23457777777776644
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=123.40 Aligned_cols=131 Identities=22% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||+|.|. -+.+.-|-+.|+.. ---+||+|||+ |+-|+..++. |+
T Consensus 291 VpGVLFIDEvHmLD-----------IE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl- 353 (450)
T COG1224 291 VPGVLFIDEVHMLD-----------IECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL- 353 (450)
T ss_pred ecceEEEechhhhh-----------HHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-
Confidence 58899999999887 55666555666542 12378889985 4667777777 77
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTI 668 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i 668 (702)
.+|...+++.++...|++..++...+..+ ..++.|+ .+...-|=+-.-+++.-|...|-++... .|
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~--~ig~etSLRYa~qLL~pa~iiA~~rg~~-----------~V 420 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLT--DIGEETSLRYAVQLLTPASIIAKRRGSK-----------RV 420 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHH--hhchhhhHHHHHHhccHHHHHHHHhCCC-----------ee
Confidence 58888999999999999999988776543 3355565 2221222233334444444555554322 79
Q ss_pred cHHHHHHHHhhcCC
Q 045279 669 KLTHFEQALSKISP 682 (702)
Q Consensus 669 ~~~d~~~al~~~~~ 682 (702)
..+|++.|..-+..
T Consensus 421 ~~~dVe~a~~lF~D 434 (450)
T COG1224 421 EVEDVERAKELFLD 434 (450)
T ss_pred ehhHHHHHHHHHhh
Confidence 99999999887754
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=135.29 Aligned_cols=204 Identities=23% Similarity=0.225 Sum_probs=125.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
....+.++|.++.+++|...+...+. -..+.+++|+||||||||++++.+++.+ +..+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 33567899999999999887744322 1234569999999999999999999877 467888988643
Q ss_pred hc----------cccc-------cc-HHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 195 VS----------GVSG-------AS-EENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 195 ~~----------~~~g-------~~-~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
.+ ...+ .. ...+..+.+.... ..+.||+|||+|.+..... ...+..|+..++..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY 169 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc
Confidence 21 1111 11 1222333333322 3457999999999872211 12344454444422
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcc---cC
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLR---VE 328 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~---~~ 328 (702)
. ..++.+|+++|... .+++.+.+ ||. ..+.|++++.++..+|+...+.... .-
T Consensus 170 ~------------------~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~ 229 (394)
T PRK00411 170 P------------------GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV 229 (394)
T ss_pred C------------------CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC
Confidence 1 12488888888753 57788877 663 5689999999999999988765321 11
Q ss_pred CcccHHHHHhhCCC--CCHHHHHHHHHHHHHHH
Q 045279 329 GSFDLVKIARSTPG--FVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~~~~~~~la~~t~g--~~~~dl~~l~~~a~~~a 359 (702)
....+..+++.+.+ ...+.+..++..|...+
T Consensus 230 ~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 230 DDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred CHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 12224445554422 13344445565555444
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=126.35 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=143.3
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHH-cCC-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEE-FGV-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG 505 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~-~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g 505 (702)
+-++|++..|+.|.-++...++....... -.. -...++||.||+|+|||.||+.||+.++.||..-++..+.. .|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 34788999888876555443322211100 001 12468999999999999999999999999999999988875 5899
Q ss_pred chHHH-HHHHHHHH----HhCCCeEEEEeCcchhhcccCC-CC--chHHHHHHHHHHHhhhCCC----------------
Q 045279 506 ESELA-VRTLFSRA----RTCSPCILFFDEVDALTTKRGK-EG--GWVVERLLNQLLIELDGAD---------------- 561 (702)
Q Consensus 506 ~~~~~-~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~-~~--~~~~~~~~~~ll~~l~~~~---------------- 561 (702)
+...+ +..++..| .+...+|++|||||.++.+... +- .-...-+++.||..++|..
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 86555 44555443 2346689999999999865421 11 1123678899999999831
Q ss_pred ---CCCcEEEEEecC---------------------------------------CC-----CccCccccCCCccceEEEc
Q 045279 562 ---KRKGVFVIGATN---------------------------------------RP-----DVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 562 ---~~~~~~vI~atn---------------------------------------~~-----~~ld~a~~r~gRf~~~i~~ 594 (702)
.+.++++|+..- .| ..|-|.|. ||++.+...
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfI--GRlPvia~L 298 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFI--GRLPVIATL 298 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHh--cccceeeeh
Confidence 223455554332 01 12334454 499999999
Q ss_pred CCCCHHHHHHHHHH----Hhcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 595 PLPTPDERGLILEA----LARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 595 ~~p~~~~r~~il~~----~~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
...+.++..+||.. +.+. ..+. .+..+..+|+..+..+-.++-||.++.+..+..+-+
T Consensus 299 ~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 299 EELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred hhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 99999999988832 2221 1111 223456777666655666688888888776554444
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=139.37 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=125.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|+++.|++.+++.|...+.. + +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 356789999999999888775542 1 445679999999999999999999988552
Q ss_pred -------------------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 491 -------------------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 491 -------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
++.+++.+ ......++.+.+.+. .....|+||||+|.+. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~ 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------I 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------H
Confidence 11121111 012345666655552 2345799999999998 5
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhh
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQ 626 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~ 626 (702)
..++.|+..++... ..+++|++|+.+..+-+++.+ |+. ++.|++++.++....+...++..+..- +..++.++
T Consensus 142 ~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~- 215 (397)
T PRK14955 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG- 215 (397)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Confidence 67788888887543 355666667777888888877 774 789999999999888888887655432 23345555
Q ss_pred hhcCCCCCHHHHHHHHHH
Q 045279 627 SKFCENLSGADLAAMMNE 644 (702)
Q Consensus 627 ~~~~~~~sg~dl~~~~~~ 644 (702)
.++|+|++.+.++
T Consensus 216 -----~~s~g~lr~a~~~ 228 (397)
T PRK14955 216 -----RKAQGSMRDAQSI 228 (397)
T ss_pred -----HHcCCCHHHHHHH
Confidence 3355566655554
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=122.85 Aligned_cols=185 Identities=20% Similarity=0.210 Sum_probs=113.1
Q ss_pred CCCCCccccc-C-HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 118 KEGPRFQDLG-G-MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 118 ~~~~~~~~i~-G-~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
.+..+|++++ | ...+...+.+... .....+++|+||||||||+|++++++.+. ..+.+++..
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~-------------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR-------------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4455899987 4 4555555554331 12235799999999999999999998763 446666665
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..... ...+++.... ..+|+|||++.+..... +...+...+...++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-----~~~~lf~l~n~~~e------------------- 128 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-----WEMAIFDLYNRILE------------------- 128 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-----HHHHHHHHHHHHHH-------------------
Confidence 53211 1122222211 25899999998864321 12222233333332
Q ss_pred CCCCeE-EEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCH
Q 045279 273 SKPGYV-LVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVG 345 (702)
Q Consensus 273 ~~~~~v-~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~ 345 (702)
.++. +++.++++|.. +.|.+++ |+. .++.+.+|+.+++.++++..+....+.-..+ +..+++...+ +.
T Consensus 129 --~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~ 203 (235)
T PRK08084 129 --SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EM 203 (235)
T ss_pred --cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CH
Confidence 1223 44444455554 6799999 885 6789999999999999988666554443333 4556666555 56
Q ss_pred HHHHHHHHH
Q 045279 346 ADLAALANK 354 (702)
Q Consensus 346 ~dl~~l~~~ 354 (702)
+.+..+++.
T Consensus 204 r~l~~~l~~ 212 (235)
T PRK08084 204 RTLFMTLDQ 212 (235)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=129.75 Aligned_cols=148 Identities=23% Similarity=0.299 Sum_probs=97.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh------hhcccccccHHHH-H-------------------HHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE------VVSGVSGASEENI-R-------------------DLF 210 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~------l~~~~~g~~~~~~-~-------------------~~f 210 (702)
.+.++||+||||||||++|+++|+.++.+++.++|.. +...+.+...... . +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999997754 3333322211110 0 112
Q ss_pred HHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--
Q 045279 211 SKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-- 288 (702)
Q Consensus 211 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-- 288 (702)
..|.. .+.+|+||||+.+.+. +...|+..|++....+ .+.... ......+.+++||+|+|+..
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i-~~~~~~--~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLEL-PGKRGT--SRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEc-cCCCCC--CceEecCCCCEEEEeeCCcccc
Confidence 22222 3359999999886643 3445777777532211 111110 00111233588999999853
Q ss_pred ---CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 289 ---AVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 289 ---~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.+++++++ || ..+.++.|+.++..+|+....
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 57899999 99 779999999999999998764
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=137.75 Aligned_cols=185 Identities=19% Similarity=0.228 Sum_probs=126.9
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE----------E
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH----------I 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~----------i 494 (702)
+..|++++|++.++..|...+.. .+.+.++||+||+|||||++|+++|+.+.+.-.. -
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 45789999999999888775532 2455679999999999999999999988652100 0
Q ss_pred ecc--------------cccccCcC---chHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 495 KGP--------------ELLNKYVG---ESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 495 ~~~--------------~l~~~~~g---~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
.|. ++. .+.| .+...++.+.+.+. .....|++|||+|.+. ....+.|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~naL 147 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNAF 147 (620)
T ss_pred CCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHHH
Confidence 000 000 0111 12345666665552 2356799999999998 6678999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~ 632 (702)
|..|+.... .+++|++|+.+..+-+.+.+ |+ .++.|..++.++....+...+++.+.. .+..++.++.
T Consensus 148 LK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~------ 216 (620)
T PRK14954 148 LKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR------ 216 (620)
T ss_pred HHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------
Confidence 999986543 45666667777888888887 77 589999999999888888887766543 2334556662
Q ss_pred CCHHHHHHHHHH
Q 045279 633 LSGADLAAMMNE 644 (702)
Q Consensus 633 ~sg~dl~~~~~~ 644 (702)
.+++|++.++++
T Consensus 217 ~s~Gdlr~al~e 228 (620)
T PRK14954 217 KAQGSMRDAQSI 228 (620)
T ss_pred HhCCCHHHHHHH
Confidence 244555555553
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-12 Score=125.34 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=104.6
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 540 (702)
..++||||||||||++++++|+++ +.....++..... .....++.... ...+|+|||++.+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 457999999999999999999876 3344444433211 11112333332 457999999999874321
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEec-CCCCcc---CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGAT-NRPDVM---DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at-n~~~~l---d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
+ ...+..++..+ ......++|.|+ ..|..+ .+.+.++.+....+.++.|+.+++.+|++..+...++.
T Consensus 109 ----~-~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 ----W-ELAIFDLFNRI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred ----H-HHHHHHHHHHH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 22333333333 222333444444 446544 47787733445788999999999999999888766554
Q ss_pred CC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 617 DS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 617 ~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.+ .-++.++.. . .=+.+.+..++......++. ....||...+.+++.
T Consensus 181 l~~~v~~~L~~~--~-~~d~r~l~~~l~~l~~~~~~------------~~~~it~~~v~~~L~ 228 (229)
T PRK06893 181 LSDEVANFLLKR--L-DRDMHTLFDALDLLDKASLQ------------AQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHh--c-cCCHHHHHHHHHHHHHHHHh------------cCCCCCHHHHHHHhc
Confidence 33 334566632 1 11234444444433211111 112588888887764
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=124.70 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=112.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
....+++|+||+|||||++|+++++.+ +.+++.+++.++... +. ....+.+|+|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc-
Confidence 456789999999999999999999875 667788887665321 11 122457999999998762
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRF--GKLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
..+..|+..++........++|++++.+. .+.+.+.+ || ...+.+|+|+.+++..++......
T Consensus 105 ----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 105 ----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred ----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 22333444443333334444555554432 24566665 76 468999999999888898887766
Q ss_pred CCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 613 KPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 613 ~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.++.-+. -++.++. .. .=+.+++.++++.....|.... ..|+...+.+++.
T Consensus 173 ~~v~l~~~al~~L~~--~~-~gn~~~l~~~l~~l~~~~~~~~------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 173 RGLQLADEVPDYLLT--HF-RRDMPSLMALLDALDRYSLEQK------------RPVTLPLLREMLA 224 (227)
T ss_pred cCCCCCHHHHHHHHH--hc-cCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHh
Confidence 5544332 3445552 11 1144777777776444333332 2799999998886
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=140.09 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=115.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCch-HHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGES-ELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+++||||||||||+|++++++.+ +..++.+++.++...+.... ...+..+.... ...+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcC
Confidence 3469999999999999999999976 45788888888765543211 11122222222 23678999999999874
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+. .....++..++........+||.+.+.|.. +++.+.+ ||. .++.+.+|+.+.|..|++..+.
T Consensus 209 ~~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 209 KT---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cH---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 32 112223333322222333455544455554 5566766 774 5778999999999999999987
Q ss_pred cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 612 KKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 612 ~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..++..+ ..++.++.. . .-+.++|..++......+.... ..|+.+.+.++|+.+
T Consensus 278 ~~~~~l~~ev~~~Ia~~--~-~~~~R~L~g~l~~l~~~~~~~~------------~~it~~~a~~~L~~~ 332 (440)
T PRK14088 278 IEHGELPEEVLNFVAEN--V-DDNLRRLRGAIIKLLVYKETTG------------EEVDLKEAILLLKDF 332 (440)
T ss_pred hcCCCCCHHHHHHHHhc--c-ccCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHHH
Confidence 6544332 335666632 1 2245777777766543332221 146666666665543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=123.34 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=116.2
Q ss_pred CCCCCccccc--CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 118 KEGPRFQDLG--GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 118 ~~~~~~~~i~--G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
....+|++++ +.+.++..+.+... +.....+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3445899976 34555555554431 23456789999999999999999999875 5688888887
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
.+... +. ....+.+|+|||+|.+.... ...|...++....
T Consensus 80 ~~~~~------------~~--~~~~~~~liiDdi~~l~~~~-----------~~~L~~~~~~~~~--------------- 119 (227)
T PRK08903 80 SPLLA------------FD--FDPEAELYAVDDVERLDDAQ-----------QIALFNLFNRVRA--------------- 119 (227)
T ss_pred HhHHH------------Hh--hcccCCEEEEeChhhcCchH-----------HHHHHHHHHHHHH---------------
Confidence 75321 11 12245699999999875321 1234444443221
Q ss_pred CCCCeEEEEEecCC-C--CCCCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHH
Q 045279 273 SKPGYVLVIGATNR-P--DAVDPALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGA 346 (702)
Q Consensus 273 ~~~~~v~vI~atn~-~--~~ld~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~ 346 (702)
.+..++|.+++. + ..+.+.+.+ || ...+.+++|+.+++..++..+.....+....+ +..+++..+| +.+
T Consensus 120 --~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 120 --HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred --cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHH
Confidence 122334444443 2 135677777 76 46899999999999999988776655544433 5556664444 777
Q ss_pred HHHHHHHHH
Q 045279 347 DLAALANKA 355 (702)
Q Consensus 347 dl~~l~~~a 355 (702)
++..+++..
T Consensus 195 ~l~~~l~~l 203 (227)
T PRK08903 195 SLMALLDAL 203 (227)
T ss_pred HHHHHHHHH
Confidence 887777764
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=141.60 Aligned_cols=181 Identities=23% Similarity=0.272 Sum_probs=131.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|++.+++.|...+.. ...+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 45789999999999888776542 134566899999999999999999998753
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
+++.+++.+ ..+...++.+...+.. ....|++|||+|.+. ...++.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHH
Confidence 233333221 1124457777766643 235699999999998 778999999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++|+.+..+-+++++ |+ .++.|..++.++...++...+.+.++..+. .++.++. .+
T Consensus 144 ~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~------~s 212 (614)
T PRK14971 144 TLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ------KA 212 (614)
T ss_pred HHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------Hc
Confidence 998653 456677777778889999988 88 479999999999999999888887765433 3556662 23
Q ss_pred HHHHHHHHHHH
Q 045279 635 GADLAAMMNEA 645 (702)
Q Consensus 635 g~dl~~~~~~a 645 (702)
|+|++.+++..
T Consensus 213 ~gdlr~al~~L 223 (614)
T PRK14971 213 DGGMRDALSIF 223 (614)
T ss_pred CCCHHHHHHHH
Confidence 45555555443
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=138.40 Aligned_cols=193 Identities=23% Similarity=0.295 Sum_probs=144.9
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE-------EE----
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF-------IH---- 493 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~-------~~---- 493 (702)
+..|+++.|++.+...|...+... +...+.||.||.|||||++||.+|+.+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 457899999999999998877543 4456789999999999999999999885431 11
Q ss_pred --Eecccccc-----cCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC
Q 045279 494 --IKGPELLN-----KYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK 562 (702)
Q Consensus 494 --i~~~~l~~-----~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 562 (702)
++...+.+ .-...+-..+|.+.+++. ...+.|.+|||+|.|. ...+|.||..++. +
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE--P 146 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE--P 146 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc--C
Confidence 11111111 011234556888888875 3467899999999999 8999999999985 4
Q ss_pred CCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHH
Q 045279 563 RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAM 641 (702)
Q Consensus 563 ~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~ 641 (702)
..+|++|+||..++.+.+.+++ |+ ..+.|...+.++....+...+.+..+..+.+ +..++.. .+| +-+|.-.+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~G-s~RDalsl 220 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEG-SLRDALSL 220 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCC-ChhhHHHH
Confidence 5689999999999999999999 99 4888999999999999999999888765543 4556632 222 44888777
Q ss_pred HHHHHHH
Q 045279 642 MNEAAMA 648 (702)
Q Consensus 642 ~~~a~~~ 648 (702)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7766643
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=133.47 Aligned_cols=201 Identities=20% Similarity=0.221 Sum_probs=121.0
Q ss_pred CCCCCccccc-CHHHHH--HHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 118 KEGPRFQDLG-GMESVL--EELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~~k--~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
.+..+|++++ |-.... ..+.+....+-. ..-...++++||||||+|||+|++++++.+ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~-------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ-------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc-------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 5667999986 533332 233322211100 011234689999999999999999999876 578889988
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
..+...+.......-...|.... ....+|+|||++.+.+.... ...+...++.+..
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~---------qeelf~l~N~l~~-------------- 233 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGAT---------QEEFFHTFNSLHT-------------- 233 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhh---------HHHHHHHHHHHHH--------------
Confidence 77654332221111112333332 34569999999988643211 1123333332211
Q ss_pred CCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCH
Q 045279 272 DSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVG 345 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~ 345 (702)
.+..+|+++.+.|. .+++++++ ||. ..+.+.+|+.++|..|++..+....+....+ +..++....+ +.
T Consensus 234 ---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-di 307 (445)
T PRK12422 234 ---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NV 307 (445)
T ss_pred ---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CH
Confidence 12245555544443 57899999 985 6789999999999999998887766544444 3446665443 55
Q ss_pred HHHHHHHHHH
Q 045279 346 ADLAALANKA 355 (702)
Q Consensus 346 ~dl~~l~~~a 355 (702)
+.|...+...
T Consensus 308 r~L~g~l~~l 317 (445)
T PRK12422 308 KSLLHALTLL 317 (445)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=131.14 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc--CcCchHHH----------HHHHHHHHHhCCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELA----------VRTLFSRARTCSPCILFF 528 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~--~~g~~~~~----------~~~~f~~a~~~~~~vl~i 528 (702)
...++++|.||||||||++++.+|..++.+++.+++...+.. ++|..... ....+..|.. .+++|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 346789999999999999999999999999999988766554 34432111 1223445554 5688999
Q ss_pred eCcchhhcccCCCCchHHHHHHHHHHHhhhC------------CCCCCcEEEEEecCCCC------------ccCccccC
Q 045279 529 DEVDALTTKRGKEGGWVVERLLNQLLIELDG------------ADKRKGVFVIGATNRPD------------VMDRAVLR 584 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~~vI~atn~~~------------~ld~a~~r 584 (702)
||+|... .++++.|...|+. ...+..+.||+|+|... .++.|++.
T Consensus 141 DEin~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 9999887 5555555555542 12344678999999754 46788888
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
||-.++.++.|+.++-.+|+.....
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9987889999999988888877653
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=122.05 Aligned_cols=113 Identities=27% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC----eEEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA----NFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 533 (702)
|..+++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+ .....+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999986 9999999998761 11111122222211 112235999999999
Q ss_pred hhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC
Q 045279 534 LTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD 576 (702)
Q Consensus 534 l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~ 576 (702)
+++..+.........+++.||+.|++. ....++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 997633333344568899999998862 2346799999999643
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=126.21 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=111.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+.+++|+||+|||||++|++++..+ +.+++.++++++.... ..++.... .+.+|+|||+|.+...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ 105 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC
Confidence 446789999999999999999999876 4678888887765421 22333222 3469999999988632
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC-CCCccC---ccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN-RPDVMD---RAVLRPGRF--GKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn-~~~~ld---~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
. .+ .+.+..++..+. ..... +|++++ .+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++.
T Consensus 106 ~-----~~-~~~L~~~l~~~~---~~~~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 106 P-----EW-QEALFHLYNRVR---EAGGR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred h-----HH-HHHHHHHHHHHH---HcCCe-EEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 1 00 122222333222 12223 444554 343332 56665 66 47899999999999999998876
Q ss_pred cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 612 KKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 612 ~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++..+ ..+..++. .. +-+-++++++++.+...+..... .|+.+.+.+++
T Consensus 174 ~~~~~~~~~~l~~L~~--~~-~gn~r~L~~~l~~~~~~~~~~~~------------~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLR--HG-SRDMGSLMALLDALDRASLAAKR------------KITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHH--hc-cCCHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHh
Confidence 6554322 22445552 11 33558888888877654444321 57777766655
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=120.77 Aligned_cols=152 Identities=21% Similarity=0.302 Sum_probs=93.8
Q ss_pred CCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEec----CCCCccCccccCCCcc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGAT----NRPDVMDRAVLRPGRF 588 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~at----n~~~~ld~a~~r~gRf 588 (702)
+.+|+||||||.++.+.+.++.+++ .-++..||-.++|. ..++++++|++. ..|..|-|.+- |||
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 5679999999999977654433443 56777888888873 356778888876 35788888884 599
Q ss_pred ceEEEcCCCCHHHHHHHHHH-----------HhccCCCC---CCCCHHHHhhhh-----cCCCCCHHHHHHHHHHHHHHH
Q 045279 589 GKLLYVPLPTPDERGLILEA-----------LARKKPID---DSVDLHTIAQSK-----FCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 589 ~~~i~~~~p~~~~r~~il~~-----------~~~~~~~~---~~~~~~~la~~~-----~~~~~sg~dl~~~~~~a~~~a 649 (702)
+-.++....+.++...||.- +++...+. .+..++.+|... -+++..++.|..++....
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL--- 404 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL--- 404 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH---
Confidence 99999999999998888732 23333332 122344444322 123445555555444322
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
. .++-...+.......|+.+-+..-|..+
T Consensus 405 -e-diSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 405 -E-DISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred -H-HhCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 1 1111122333344567777777666554
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=135.95 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=119.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
..++|||++|+|||+|++++++.+ +..++.+++.+|...++..........|.+-.. .+++|+|||++.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 458999999999999999999976 568899999888766544322222223433222 56899999999997543
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC----CccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP----DVMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~----~~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
. ..+.+-.++..+- ..... ||+|+|.+ ..+++.+.+ ||. .++.+..|+.+.|..||+.++..
T Consensus 394 ~------tqeeLF~l~N~l~---e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 S------TQEEFFHTFNTLH---NANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred H------HHHHHHHHHHHHH---hcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1 1222233333332 22222 44466653 357888887 884 66689999999999999999888
Q ss_pred CCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 613 KPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 613 ~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..+.... -++.|+.+. .=+-+.|..++......+.... ..|+.+.++.+|+.+
T Consensus 462 r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~~~~------------~~itl~la~~vL~~~ 515 (617)
T PRK14086 462 EQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFASLNR------------QPVDLGLTEIVLRDL 515 (617)
T ss_pred cCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHhhC------------CCCCHHHHHHHHHHh
Confidence 7665443 345666321 1144677776665543333221 145666666666544
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-12 Score=135.54 Aligned_cols=169 Identities=21% Similarity=0.384 Sum_probs=107.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CC--eEEE
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VP--FYKI 189 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~--~~~i 189 (702)
....|.+|+|++.+++.+.-.+.. ....|+||.|+||||||++|+++++.+. .+ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 345899999999999988743311 1236899999999999999999999983 21 1111
Q ss_pred ech---------hhhc---------------ccccccHH----------HHHHHHHHHHhhCCceEEechhhHhhhcchh
Q 045279 190 SAT---------EVVS---------------GVSGASEE----------NIRDLFSKAYRTAPSIVFIDEIDAIASKREN 235 (702)
Q Consensus 190 ~~~---------~l~~---------------~~~g~~~~----------~~~~~f~~a~~~~p~il~iDEid~l~~~~~~ 235 (702)
.+. .+.. ...|...- --.+.+..+ ...+||+|||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl~~~--- 143 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLLEDH--- 143 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhCCHH---
Confidence 100 0000 01121000 001111122 2249999999887643
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCCH-HH
Q 045279 236 LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPDE-NA 313 (702)
Q Consensus 236 ~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~~-~e 313 (702)
....|+..|++....+... +.....+.++++|+++|+.+ .++++++. ||...+.+++|.. ++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~------G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e 207 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVERE------GLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVET 207 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEEC------CeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHH
Confidence 3456777777543211111 11122455699999999865 68999999 9998999998877 99
Q ss_pred HHHHHHHhh
Q 045279 314 RVQILSVLT 322 (702)
Q Consensus 314 r~~Il~~~~ 322 (702)
+.+|+....
T Consensus 208 ~~~il~~~~ 216 (334)
T PRK13407 208 RVEVIRRRD 216 (334)
T ss_pred HHHHHHHhh
Confidence 999998643
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=136.83 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=132.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---------EEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY---------KISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---------~i~~ 191 (702)
.+|++|+|++.+++.|...+.. -+.++.+|||||+|+|||++|+.+|+.+.+... .-+|
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4899999999999999987732 123456999999999999999999998863210 0011
Q ss_pred hhhhcc-------ccc---ccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSG---ASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g---~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ +.+ .....++.+...+.. +...|++|||+|.|... ..+.|+..|++.
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-----------a~naLLK~LEep-- 148 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-----------AFNAFLKTLEEP-- 148 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH-----------HHHHHHHHHhCC--
Confidence 111111 001 113456666655532 23459999999988532 345688888853
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
+..+++|.+|+....+-+.+++ |+ ..+.|..++.++....+...+....+.... .+..+
T Consensus 149 -----------------p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 149 -----------------PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred -----------------CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4457788888888899999999 88 679999999999999998888777665443 35666
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.| +.+++.++++....
T Consensus 209 a~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 209 AQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 766644 67777666655443
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-11 Score=117.85 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=103.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcch
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRE 234 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~ 234 (702)
.++++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999998764 5678888888775421 223333322 24999999997764322
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCC
Q 045279 235 NLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVP 309 (702)
Q Consensus 235 ~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p 309 (702)
+...|...++.... .+..++|+++..|. ...|.+++ ||. .++.+..|
T Consensus 115 ---------~~~~Lf~l~n~~~~-----------------~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 115 ---------WEEALFHLFNRLRD-----------------SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred ---------HHHHHHHHHHHHHh-----------------cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCC
Confidence 12234444443321 24467777776554 34789999 884 56788999
Q ss_pred CHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 310 DENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+.+++..+++..+....+....+ +..+++...+ +.+.+..+++..
T Consensus 167 ~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 167 SDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 99999999996555544433333 4445555544 666666665544
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=134.00 Aligned_cols=168 Identities=22% Similarity=0.372 Sum_probs=110.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
.++++|||++|||||.|+++|++.+ +..++++++.++...+...........|..-.. ...+|+||||+.+..+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDK 392 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCC
Confidence 3569999999999999999999986 467899999888766543332222223433322 4579999999988754
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CC---CCCccccCCCCcc--eEEEe
Q 045279 233 RENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PD---AVDPALRRPGRFD--REIVL 306 (702)
Q Consensus 233 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~---~ld~al~r~~Rf~--~~i~~ 306 (702)
... ...|+..++.+.. .+.-+|| |+|. +. .+++.|++ ||. .++.+
T Consensus 393 e~t---------qeeLF~l~N~l~e-----------------~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I 443 (617)
T PRK14086 393 EST---------QEEFFHTFNTLHN-----------------ANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDV 443 (617)
T ss_pred HHH---------HHHHHHHHHHHHh-----------------cCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEc
Confidence 321 1223334443321 1223444 5544 33 57899999 884 56799
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
..|+.+.|..||+..+....+....+ +..|+....+ +.+.|..++.+..
T Consensus 444 ~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 444 QPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 99999999999999888776655444 4445555443 5667766666543
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-13 Score=128.85 Aligned_cols=130 Identities=25% Similarity=0.406 Sum_probs=74.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV----------------- 184 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----------------- 184 (702)
.|.+|+|++.+|..+.-.+. | ..|+||+||||||||++|+.+...+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 38899999999999985441 2 478999999999999999999987631
Q ss_pred -----------CeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 185 -----------PFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 185 -----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
+|.....+.-.....|....-..+.+..|. ..|||+||+.. +.+.+++.|+..++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~e-----------f~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNE-----------FDRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTT-----------S-HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhh-----------cCHHHHHHHHHHHH
Confidence 111111111000011111000011222332 34999999943 44678889999998
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCC
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR 286 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~ 286 (702)
.....+... ......|.++++|+|+|+
T Consensus 132 ~g~v~i~R~------~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 132 DGEVTISRA------GGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HSBEEEEET------TEEEEEB--EEEEEEE-S
T ss_pred CCeEEEEEC------CceEEEecccEEEEEecc
Confidence 755433322 122335677999999998
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=138.43 Aligned_cols=189 Identities=21% Similarity=0.277 Sum_probs=126.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE---------Ee
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK---------IS 190 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---------i~ 190 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|+|||++|+.+|+.+++.... -.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34899999999999999877632 1234568999999999999999999998642210 00
Q ss_pred chhhhccc----------ccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 191 ATEVVSGV----------SGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 191 ~~~l~~~~----------~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
|..+..+. .......++.+.+.+.. ....|+||||+|.|... ..+.|+..+++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-----------a~naLLk~LEep- 147 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-----------AFNALLKTLEEP- 147 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-----------HHHHHHHHHhcC-
Confidence 11111110 01122334555443322 23459999999988632 244577777752
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHH
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVK 335 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~ 335 (702)
+.++++|.+++..+.+.+.+++ |+ ..+.|..++..+...++...+......... .+..
T Consensus 148 ------------------p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~ 206 (585)
T PRK14950 148 ------------------PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEA 206 (585)
T ss_pred ------------------CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3447777778888888888988 88 568999999999999998887766544333 3556
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANK 354 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~ 354 (702)
++..+.| +.+++.+.++.
T Consensus 207 La~~s~G-dlr~al~~Lek 224 (585)
T PRK14950 207 IARAATG-SMRDAENLLQQ 224 (585)
T ss_pred HHHHcCC-CHHHHHHHHHH
Confidence 6666655 67766666654
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=127.66 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=116.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechhhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-----PFYKISATEVV 195 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~i~~~~l~ 195 (702)
.+|++++|.+.+++.+...+.. ....+++|+||||||||++++++++.+.. .++.+++++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 4899999999999999877621 12236999999999999999999998732 34445443311
Q ss_pred cccccccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
....+...+..... ..+.+++|||+|.+.... ...|+..++..
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~-------------- 129 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMY-------------- 129 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcC--------------
Confidence 01111222222211 234599999998885321 22355555432
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADL 348 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl 348 (702)
+.+..+|.++|.+..+.+++.+ |+ ..+.|++|+.++...++...+......-. ..+..++..+.| +.+.+
T Consensus 130 -----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~ 200 (319)
T PRK00440 130 -----SQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKA 200 (319)
T ss_pred -----CCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 1225566677887788888888 88 46899999999999999988876655332 346667766554 44444
Q ss_pred HHHH
Q 045279 349 AALA 352 (702)
Q Consensus 349 ~~l~ 352 (702)
.+.+
T Consensus 201 ~~~l 204 (319)
T PRK00440 201 INAL 204 (319)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-12 Score=130.30 Aligned_cols=160 Identities=21% Similarity=0.333 Sum_probs=104.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------C--eEEEEe
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------A--NFIHIK 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~--~~~~i~ 495 (702)
...|.++.|++.+++.+.-.... ....|+||.||||||||++|++++..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45688999999988866532211 1225899999999999999999999872 2 111111
Q ss_pred c-ccc--------cc---------------cCcCch--HHHH---HHHHHH--HHhCCCeEEEEeCcchhhcccCCCCch
Q 045279 496 G-PEL--------LN---------------KYVGES--ELAV---RTLFSR--ARTCSPCILFFDEVDALTTKRGKEGGW 544 (702)
Q Consensus 496 ~-~~l--------~~---------------~~~g~~--~~~~---~~~f~~--a~~~~~~vl~iDEid~l~~~r~~~~~~ 544 (702)
+ .++ .. ..+|.- +..+ ...|.. ......++||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 000 00 011110 0000 000110 011244799999999998
Q ss_pred HHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCCH-HHHHHHHHHHh
Q 045279 545 VVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALA 610 (702)
Q Consensus 545 ~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~ 610 (702)
..+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|++...
T Consensus 142 --~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 --DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 888889998886432 235688888888755 58888888 9999999998876 88999998743
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-11 Score=136.91 Aligned_cols=147 Identities=22% Similarity=0.297 Sum_probs=107.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc------c-----cccccHHHHHHHHHHHHhhCCceEEechh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------G-----VSGASEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------~-----~~g~~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
.+++||-|.||+|||+|..++|+..|..++.||.++-.. . -.|+....-..++...+. +.++++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 467999999999999999999999999999999875322 1 123333332333333333 349999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------CCCccccCCCCc
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------AVDPALRRPGRF 300 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------~ld~al~r~~Rf 300 (702)
+.. ...++.-|-.|+|.....+-+. -+.+...+.+++|.||-|+-. .++..+.. ||
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPE-----ld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPE-----LDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhcccccccc-----ccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 543 2456777888888765544433 233444567799999999854 68999998 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 301 DREIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 301 ~~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
.++.+...+.++...|...++...
T Consensus 1683 -svV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1683 -SVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred -heEEecccccchHHHHHHhhCCcc
Confidence 779999999999999998877654
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=134.27 Aligned_cols=203 Identities=22% Similarity=0.262 Sum_probs=132.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
...+..|||...++.++.+.+. .-.+...+|||.|++||||..+|++|-+.. ..||+.+||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~-----------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIE-----------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHH-----------HHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 5578899999999999998883 345667889999999999999999997765 58999999999876
Q ss_pred c-------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 G-------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~-------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+ +.|+...+ .+-|+.|.++ .||+|||-.|+...| ..||..+.+-. +-..|+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r-~GrFElAdGG---TLFLDEIGelPL~lQ-----------aKLLRvLQegE-ieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTR-RGRFELADGG---TLFLDEIGELPLALQ-----------AKLLRVLQEGE-IERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhcc-CcceeecCCC---eEechhhccCCHHHH-----------HHHHHHHhhcc-eeecCC
Confidence 5 22332222 4456666444 999999977765433 34777766422 111222
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCC--CC-----CCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRP--DA-----VDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~--~~-----ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~ 328 (702)
.. ..+-+|+||||||+- +. .-..|.- |+ .++.+..|...+|.. +...++.+. ...
T Consensus 352 ~r-------~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~ 421 (550)
T COG3604 352 DR-------TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA 421 (550)
T ss_pred Cc-------eeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc
Confidence 21 123459999999982 11 2222222 55 567888888877754 223333322 221
Q ss_pred ---Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 ---GS-FDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ---~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
-. ..+..+.+..---+.++|++++.+|+..+
T Consensus 422 ~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 422 ILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 11 12333444333337899999999998877
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-11 Score=128.56 Aligned_cols=168 Identities=21% Similarity=0.336 Sum_probs=116.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH--------hCCCeEEEEeCcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVD 532 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------~~~~~vl~iDEid 532 (702)
++.+-+||+||||-||||||+.+|+++|+.+++|++|+-. +...++.-+..|. ...|.+|+|||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 3445578999999999999999999999999999999843 3333433333332 2578999999999
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhC-------CCCC------------CcEEEEEecCCCCccCccc--cCCCccceE
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDG-------ADKR------------KGVFVIGATNRPDVMDRAV--LRPGRFGKL 591 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~-------~~~~------------~~~~vI~atn~~~~ld~a~--~r~gRf~~~ 591 (702)
.-. ..+++.++..+.. .... =.--|||.+|.... |++ +| -|-.+
T Consensus 398 Ga~-----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr--~~A~i 462 (877)
T KOG1969|consen 398 GAP-----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLR--PFAEI 462 (877)
T ss_pred CCc-----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcc--cceEE
Confidence 655 5555666555441 1110 01347888986543 444 35 58889
Q ss_pred EEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 592 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+|++|...-..+=|+......++.. +...|. .+| .++..|||.+|+.....+.+...
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~--d~~aL~--~L~-el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRA--DSKALN--ALC-ELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCC--CHHHHH--HHH-HHhcchHHHHHHHHHHHHHhccc
Confidence 99999999887777777776666543 333333 333 45667999999999887776543
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-12 Score=131.57 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=130.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~~~l~ 195 (702)
...+++|+|.+...+++.+.+.. -.+...+||++|++||||+.+|+.|... ...||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 33689999999999999988854 1344578999999999999999998533 46799999999886
Q ss_pred cc-------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 196 SG-------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 196 ~~-------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
.+ +.|. ...-.++|+.|.++ +||+|||+.|+...+. .|+..+++... ...|
T Consensus 143 en~~~~eLFG~~kGaftGa-~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q~-----------kLl~~le~g~~-~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGA-QGGKAGLFEQANGG---TLFLDEIHRLPPEGQE-----------KLLRVLEEGEY-RRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecc-cCCcCchheecCCC---EEehhhhhhCCHhHHH-----------HHHHHHHcCce-EecC
Confidence 55 2342 23336788888665 9999999999876543 47777775321 1112
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCC--CCCCc--cccCCCCcceEEEeCCCCHHHHHH----HHHHhh----cCcccCCc
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRP--DAVDP--ALRRPGRFDREIVLGVPDENARVQ----ILSVLT----RNLRVEGS 330 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~--~~ld~--al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~----~~~~~~~~ 330 (702)
+ ....+.+|++|+|||.. +.+-. .+.+ |. ..+.+..|+..+|.. ++..++ ++......
T Consensus 207 ~-------~~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~ 276 (403)
T COG1221 207 G-------SQPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLS 276 (403)
T ss_pred C-------CCCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 2 22235569999999862 23333 4433 33 345666666666543 333333 33333222
Q ss_pred cc----HHHHHh-hCCCCCHHHHHHHHHHHHHHH
Q 045279 331 FD----LVKIAR-STPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 331 ~~----~~~la~-~t~g~~~~dl~~l~~~a~~~a 359 (702)
.. +..+.. ..+| +.++|++++..++..+
T Consensus 277 ~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 277 VDSPEALRALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred CCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 22 233333 3444 7789999998887655
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=120.86 Aligned_cols=180 Identities=11% Similarity=0.098 Sum_probs=106.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++|+||+|||||++++++++.+. ..+..++..+.... ...+++... ...+|+|||++.+.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCH-
Confidence 35799999999999999999998763 34455554432211 112222222 23699999999987432
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCc-EEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKG-VFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~-~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
.+ .+.+..++..+- ...+ .+|+.+++.|.. +.|.+.+ |+. .++.+.+|+.+++.++++..+...
T Consensus 114 ----~~-~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 ----LW-EMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred ----HH-HHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 11 223333333321 1233 344444444444 6788887 885 788999999999999998877665
Q ss_pred CCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 614 PIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 614 ~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
++..+ .-++.++.. + .=+.+.+.+++......++.. ...||...+.+++.
T Consensus 184 ~~~l~~~v~~~L~~~--~-~~d~r~l~~~l~~l~~~~l~~------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 184 GFELPEDVGRFLLKR--L-DREMRTLFMTLDQLDRASITA------------QRKLTIPFVKEILK 234 (235)
T ss_pred CCCCCHHHHHHHHHh--h-cCCHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHc
Confidence 55433 335666632 1 224456666665533222221 12588888887764
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=111.98 Aligned_cols=122 Identities=43% Similarity=0.684 Sum_probs=86.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHH---HHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELA---VRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~---~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 88899998877655432221111 1122333445578999999999884
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCCCC----CCcEEEEEecCCCC--ccCccccCCCccceEEEcCC
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGADK----RKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~ 596 (702)
......++..+..... ..++.+|++||... .+++.+.. ||+..+.+++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 3444555555554432 46788889998876 67777777 9988887763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-12 Score=137.25 Aligned_cols=200 Identities=23% Similarity=0.332 Sum_probs=132.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
.+.+++|....++++.+.+.. -.....+|||+|++||||..+|++|-+.. +.||+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 678999999999999987733 34566789999999999999999996655 579999999987654
Q ss_pred ------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 198 ------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 198 ------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
+.|.... -.+.|+.|.++ +||+|||..|+.. +...||..+++.. +...|+..
T Consensus 208 ~ESELFGhekGAFTGA~~~-r~G~fE~A~GG---TLfLDEI~~mpl~-----------~Q~kLLRvLqe~~-~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITR-RIGRFEQANGG---TLFLDEIGEMPLE-----------LQVKLLRVLQERE-FERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccc-cCcceeEcCCc---eEEeeccccCCHH-----------HHHHHHHHHHcCe-eEecCCCc
Confidence 2233322 24577777655 9999999877744 3345777776432 22223222
Q ss_pred CCCCCCCCCCCeEEEEEecCCC--CCCC-----ccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc----cC-C
Q 045279 266 SKSDASDSKPGYVLVIGATNRP--DAVD-----PALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR----VE-G 329 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~--~~ld-----~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~----~~-~ 329 (702)
. .+-+|+||+|||.. +.+. +.|.- |+ .++.+..|+..+|.+ ++.+++++.. .. .
T Consensus 272 ~-------i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~ 341 (464)
T COG2204 272 P-------IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPK 341 (464)
T ss_pred c-------cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCC
Confidence 1 23459999999983 2333 33444 67 678999999888876 3344443321 11 1
Q ss_pred ccc---HHHH-HhhCCCCCHHHHHHHHHHHHHHH
Q 045279 330 SFD---LVKI-ARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 330 ~~~---~~~l-a~~t~g~~~~dl~~l~~~a~~~a 359 (702)
... +..+ ...++| +.++|.+++.+++..+
T Consensus 342 ~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~ 374 (464)
T COG2204 342 GFSPEALAALLAYDWPG-NVRELENVVERAVILS 374 (464)
T ss_pred CCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC
Confidence 111 2222 233455 6788888888877654
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=130.88 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=119.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH---HHHHHHHHHHhCCCeEEEEeCcchh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL---AVRTLFSRARTCSPCILFFDEVDAL 534 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~---~~~~~f~~a~~~~~~vl~iDEid~l 534 (702)
..+++|||++|+|||+|++++++.+ +..++.+++.++...+...... .+..+.... ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4568999999999999999999854 4688889988887665433221 222222222 35679999999988
Q ss_pred hcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-CC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHH
Q 045279 535 TTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-PD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 535 ~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~ 608 (702)
.++. ...+.+-.++..+. ..... +|+|+|. |. .+++.+.+ ||. ..+.+.+|+.++|.+|++.
T Consensus 219 ~~k~------~~~e~lf~l~N~~~---~~~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKE------KTNEIFFTIFNNFI---ENDKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCH------HHHHHHHHHHHHHH---HcCCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHH
Confidence 7432 11233333333332 22223 4556655 33 45777777 885 6778889999999999999
Q ss_pred HhccCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 609 LARKKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 609 ~~~~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++..++. .+.-++.|+.. + +-+.+.|..+|..+...+..... ...|+.+.+.++++.+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~--~-~gd~R~L~gaL~~l~~~a~~~~~----------~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNY--Y-SDDVRKIKGSVSRLNFWSQQNPE----------EKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHc--c-CCCHHHHHHHHHHHHHHHhcccC----------CCCCCHHHHHHHHhhc
Confidence 98875531 22334555521 1 22446666666665543333211 1258888888888765
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=110.71 Aligned_cols=141 Identities=40% Similarity=0.635 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHH
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~ 204 (702)
|.+.++..+...+ ......+++++||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~-------------~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREAL-------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHH-------------hCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 5667777776555 12245789999999999999999999998 8899999988765543222111
Q ss_pred H---HHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 205 N---IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 205 ~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
. ....+.......+.+|+|||++.+... ....++..+....... ..+..+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~-------------~~~~~~~ii 124 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLR-------------IDRENVRVI 124 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCcee-------------ccCCCeEEE
Confidence 1 112223333456789999999877321 1123444444322100 012348889
Q ss_pred EecCCCC--CCCccccCCCCcceEEEeC
Q 045279 282 GATNRPD--AVDPALRRPGRFDREIVLG 307 (702)
Q Consensus 282 ~atn~~~--~ld~al~r~~Rf~~~i~~~ 307 (702)
+++|... .+++.+.+ ||+.++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 125 GATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EecCccccCCcChhHHh--hhccEeecC
Confidence 9998876 77888888 997666665
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=116.20 Aligned_cols=183 Identities=25% Similarity=0.317 Sum_probs=109.4
Q ss_pred CCCCCcccccCHH-HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 118 KEGPRFQDLGGME-SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 118 ~~~~~~~~i~G~~-~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+..+|+++++-. .....+..... + ...+.++|+||+|||||+|+++++..+ +....+++..+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3455888876543 33333332210 1 123569999999999999999997765 55666776655
Q ss_pred hhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+. ..+...++... ...+|+|||++.+...... ...+...++....
T Consensus 80 ~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~---------~~~lf~l~n~~~~---------------- 124 (233)
T PRK08727 80 AA--------GRLRDALEALE--GRSLVALDGLESIAGQRED---------EVALFDFHNRARA---------------- 124 (233)
T ss_pred hh--------hhHHHHHHHHh--cCCEEEEeCcccccCChHH---------HHHHHHHHHHHHH----------------
Confidence 32 22333444432 3459999999988754321 1123333333221
Q ss_pred CCCeEEEEEecC-CCCC---CCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHH
Q 045279 274 KPGYVLVIGATN-RPDA---VDPALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGA 346 (702)
Q Consensus 274 ~~~~v~vI~atn-~~~~---ld~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~ 346 (702)
.+ ..+|.|+| .|.. ++|.+++ || ..++.++.|+.+++.+|++..+....+..+. .+..+++.+.| ..+
T Consensus 125 -~~-~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r 199 (233)
T PRK08727 125 -AG-ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELA 199 (233)
T ss_pred -cC-CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHH
Confidence 11 33555554 4554 4799998 86 4678999999999999999876654444333 35566766553 333
Q ss_pred HHHHHHH
Q 045279 347 DLAALAN 353 (702)
Q Consensus 347 dl~~l~~ 353 (702)
.+.+++.
T Consensus 200 ~~l~~L~ 206 (233)
T PRK08727 200 GLVALLD 206 (233)
T ss_pred HHHHHHH
Confidence 3333344
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=120.65 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=109.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 540 (702)
..++|+||+|||||+++.+++..+ +...+.++..++.. .+...+.... ...+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 458999999999999999998765 45555665544322 2223444332 456999999998874331
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC-CCCc---cCccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATN-RPDV---MDRAVLRPGRF--GKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn-~~~~---ld~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
. ...+..++..+. .. +.-||+|+| .|.. +++++.+ || ..++.+++|+.+++..|++.++...+
T Consensus 111 ----~-~~~lf~l~n~~~---~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ----D-EVALFDFHNRAR---AA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ----H-HHHHHHHHHHHH---Hc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 223333444332 11 223555555 4543 4788887 86 46889999999999999998776655
Q ss_pred CCCC-CCHHHHhhhhcCCCCCHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 615 IDDS-VDLHTIAQSKFCENLSGADLAAM---MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 615 ~~~~-~~~~~la~~~~~~~~sg~dl~~~---~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+..+ ..++.++.. .++|++.+ ++.....+... ...||...+.+++..-
T Consensus 180 l~l~~e~~~~La~~------~~rd~r~~l~~L~~l~~~~~~~------------~~~it~~~~~~~l~~~ 231 (233)
T PRK08727 180 LALDEAAIDWLLTH------GERELAGLVALLDRLDRESLAA------------KRRVTVPFLRRVLEEG 231 (233)
T ss_pred CCCCHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHhhc
Confidence 4332 335566632 33666665 44333222221 1268888888887653
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=115.98 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=75.4
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-----------
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----------- 286 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----------- 286 (702)
|.||||||+|.|-- ..+.-|...|+.-. . -++|.|||+
T Consensus 292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~-----------------a---PIii~AtNRG~~kiRGTd~~ 340 (450)
T COG1224 292 PGVLFIDEVHMLDI-----------ECFSFLNRALESEL-----------------A---PIIILATNRGMTKIRGTDIE 340 (450)
T ss_pred cceEEEechhhhhH-----------HHHHHHHHHhhccc-----------------C---cEEEEEcCCceeeecccCCc
Confidence 67999999987742 22333444454311 1 366777776
Q ss_pred -CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 287 -PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 287 -~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
|..++..|+. |+ -+|...+++.++..+|++..++...+..+.+ +..++.....-+.+...+|+.-|...|.+|
T Consensus 341 sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 341 SPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred CCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh
Confidence 4578888988 98 7889999999999999999888777655443 566776666666666666666555555443
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=117.28 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=122.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
.+..+.+|+|.++....+.-.. +-|. -.++++.|||||||||.+.++|+++ +..++++++|+
T Consensus 22 rP~~l~dIVGNe~tv~rl~via-----------~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIA-----------KEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHH-----------HcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3456789999999877765422 2222 2478999999999999999999987 34678888887
Q ss_pred ccccCcCchHHHHHHHHHHHH-hC---CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 499 LLNKYVGESELAVRTLFSRAR-TC---SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~-~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
-.+ + ...++.-..|++-+ .. ...|+++||+|++. ...++.|-+.|+-+.+..+ +..++|.
T Consensus 89 eRG--I-DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~ttR--FalaCN~ 152 (333)
T KOG0991|consen 89 ERG--I-DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNTTR--FALACNQ 152 (333)
T ss_pred ccc--c-HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcccch--hhhhhcc
Confidence 433 1 23334445565543 22 33599999999998 6677777778876655544 5557898
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
.+.|-+.+-+ ||. ++.|...+..+...=+....+..++.. +..++.+. ++ +.+|+|+.++...
T Consensus 153 s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii---ft---a~GDMRQalNnLQ 216 (333)
T KOG0991|consen 153 SEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII---FT---AQGDMRQALNNLQ 216 (333)
T ss_pred hhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh---hh---ccchHHHHHHHHH
Confidence 8887777766 885 555655555544333333444444433 34456555 12 4579999988655
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=110.30 Aligned_cols=195 Identities=21% Similarity=0.308 Sum_probs=136.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
....+.+.+|+|.+.+++.+.+.....+ .-.+.+||||+|..|||||++++++-+++ +..+++|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3456789999999999999988775433 23467999999999999999999998776 46789998888
Q ss_pred hhcccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+. .+..+++..+.. .+-|||+|++-. +. ++ .....|...|++. ..
T Consensus 124 l~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF-----e~--gd---~~yK~LKs~LeG~---------------ve 169 (287)
T COG2607 124 LA---------TLPDLVELLRARPEKFILFCDDLSF-----EE--GD---DAYKALKSALEGG---------------VE 169 (287)
T ss_pred Hh---------hHHHHHHHHhcCCceEEEEecCCCC-----CC--Cc---hHHHHHHHHhcCC---------------cc
Confidence 73 345566665433 345999999821 11 11 1233455556632 23
Q ss_pred CCCCeEEEEEecCCCCCCC--------------c------cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 273 SKPGYVLVIGATNRPDAVD--------------P------ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld--------------~------al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
..|.+|+|-||+|+...++ | .+.=++||.-.+.|.+++.++-..|+..+++...+....
T Consensus 170 ~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e 249 (287)
T COG2607 170 GRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDE 249 (287)
T ss_pred cCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3578899999999854332 1 122234999999999999999999999999988876643
Q ss_pred cHH----HHHhhCCCCCHHHHHHHHHH
Q 045279 332 DLV----KIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 ~~~----~la~~t~g~~~~dl~~l~~~ 354 (702)
.+. ..|....|-+||-..++++.
T Consensus 250 ~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 250 ELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 222 34445566677765555543
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=129.47 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=108.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEE--
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VPFYK-- 188 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~-- 188 (702)
...+.|.+|+|++++|..|.-.+..| ...++||.||+|||||++|+++++.+. .+|..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 34558999999999999988655332 236899999999999999999988763 12210
Q ss_pred ----Eechhhhcc-------------------cccccHHHH------------------HHHHHHHHhhCCceEEechhh
Q 045279 189 ----ISATEVVSG-------------------VSGASEENI------------------RDLFSKAYRTAPSIVFIDEID 227 (702)
Q Consensus 189 ----i~~~~l~~~-------------------~~g~~~~~~------------------~~~f~~a~~~~p~il~iDEid 227 (702)
..+..+... -.|.++.++ .+++..| ...+||+|||+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A---~~GiL~lDEIn 154 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVN 154 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeec---CCCEEEecChH
Confidence 000000000 011122211 1112222 23599999999
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEe
Q 045279 228 AIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVL 306 (702)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~ 306 (702)
.+.+.. ...|+..|++....+... +.+...+.++++|+|.|+.+ .+.+++.. ||...+.+
T Consensus 155 rL~~~~-----------Q~~LLeam~e~~~~ier~------G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l 215 (350)
T CHL00081 155 LLDDHL-----------VDILLDSAASGWNTVERE------GISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEI 215 (350)
T ss_pred hCCHHH-----------HHHHHHHHHhCCeEEeeC------CeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeec
Confidence 887543 334777776532212111 11122355699999999866 69999999 99999999
Q ss_pred CCCC-HHHHHHHHHHh
Q 045279 307 GVPD-ENARVQILSVL 321 (702)
Q Consensus 307 ~~p~-~~er~~Il~~~ 321 (702)
..|+ .+.+.+|++..
T Consensus 216 ~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 216 RTVKDPELRVKIVEQR 231 (350)
T ss_pred CCCCChHHHHHHHHhh
Confidence 9998 59999999865
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=120.95 Aligned_cols=125 Identities=24% Similarity=0.296 Sum_probs=86.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc----cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP----ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~----~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+.+++|+||||||||++|+++|..++.+|+.++.. ++.+ ++.....-...-|-+|.. .+++|||||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~-- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI-- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC--
Confidence 355789999999999999999999999999998742 1111 111111111112333333 56899999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhC---------CCCCCcEEEEEecCCC-----------CccCccccCCCccceEEEcCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDG---------ADKRKGVFVIGATNRP-----------DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~vI~atn~~-----------~~ld~a~~r~gRf~~~i~~~~p 597 (702)
..++..|...++. ...+.++.+|+|+|.+ ..++++++. ||- .|+|+.|
T Consensus 194 ---------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 194 ---------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ---------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 5566666666542 1234678999999973 467899998 994 7999999
Q ss_pred CHHHH
Q 045279 598 TPDER 602 (702)
Q Consensus 598 ~~~~r 602 (702)
+.-|.
T Consensus 262 ~~~E~ 266 (383)
T PHA02244 262 EKIEH 266 (383)
T ss_pred cHHHH
Confidence 85444
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=121.40 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=121.0
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEE----e
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------FYKI----S 190 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~i----~ 190 (702)
.+++|+|++.+++.+...+.. -+-++.+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 899999999999999987722 2345679999999999999999999998541 1000 1
Q ss_pred c---hhhhcc-------------cc-c-----ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHH
Q 045279 191 A---TEVVSG-------------VS-G-----ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRI 244 (702)
Q Consensus 191 ~---~~l~~~-------------~~-g-----~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~ 244 (702)
| ..+..+ .. + -....++.+.+... .+...|++|||+|.|....
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~a----------- 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNA----------- 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHH-----------
Confidence 1 111000 00 0 01123333332222 3345699999999886432
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 245 VTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 245 ~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.+.|+..+++. +.+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..+++......
T Consensus 158 anaLLk~LEEp-------------------p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~ 215 (351)
T PRK09112 158 ANAILKTLEEP-------------------PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSS 215 (351)
T ss_pred HHHHHHHHhcC-------------------CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcc
Confidence 34588888762 3446677777888889999999 98 68999999999999999874322
Q ss_pred cccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 325 LRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 325 ~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+ ....+..+++.+.| +++....++...
T Consensus 216 ~~~-~~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 216 QGS-DGEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred cCC-CHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 221 12224455655555 555555555443
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-11 Score=118.37 Aligned_cols=180 Identities=15% Similarity=0.209 Sum_probs=111.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++|+||+|||||+|++++++++ +..++.++..++...+ ..+.+... ...+|+||+++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 4678999999999999999999764 5677888877765421 12333333 23699999999886432
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
.....|...++........+||+++..|. ...|.+.+ ||. .++.+..|+.+++..+++..+...+
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11222333333333334556665555453 34677877 884 6677899999999999997666544
Q ss_pred CCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 615 IDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 615 ~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
+.- +.-++.++.+ . .-+.+.+..+++.....++... ..||..-+.++|.
T Consensus 184 ~~l~~ev~~~L~~~--~-~~d~r~l~~~l~~l~~~~l~~~------------~~it~~~~~~~L~ 233 (234)
T PRK05642 184 LHLTDEVGHFILTR--G-TRSMSALFDLLERLDQASLQAQ------------RKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHcC------------CcCCHHHHHHHhc
Confidence 432 3334566632 1 2355666666665543333321 2578777777764
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=120.31 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=126.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCch-HHHHHHHHHHHH----hCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGES-ELAVRTLFSRAR----TCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~ 536 (702)
..++||.||+|+|||.||+.||+.++.||...+|..+.. .|+|+. +.-+..++..|. +...+|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 367999999999999999999999999999999998874 489874 445666666542 34668999999999984
Q ss_pred ccCCCCc--h-HHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCC--------------------
Q 045279 537 KRGKEGG--W-VVERLLNQLLIELDGAD-------------------KRKGVFVIGATNR-------------------- 574 (702)
Q Consensus 537 ~r~~~~~--~-~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~-------------------- 574 (702)
.-..-+. + ...-+++.||..++|.. ...++++|+..-.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence 3322111 1 22678889999998821 1223444433210
Q ss_pred C------------------------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHH----H-----
Q 045279 575 P------------------------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA----L----- 609 (702)
Q Consensus 575 ~------------------------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~----~----- 609 (702)
+ .-+-|.|. |||+.++.|...+.+.+.+|+.- +
T Consensus 386 ~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk 463 (564)
T KOG0745|consen 386 PSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYK 463 (564)
T ss_pred CCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhhHHHHHH
Confidence 0 02233443 59999999999999999888732 1
Q ss_pred --hccCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 610 --ARKKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 610 --~~~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
+.-..+. .+..++.+|+..+..+-.++-||.++..+.+.|.-+
T Consensus 464 ~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 464 KLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 1111111 223466777766666666688888888777665544
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-12 Score=115.87 Aligned_cols=127 Identities=27% Similarity=0.454 Sum_probs=75.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--cccccHHH------HHHHHHHHHhhCCceEEechhhHhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGASEEN------IRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~~~~------~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
+|||+||||||||++++.+|+.++.+++.++++..... ..|..... ....+-.+. ..+.+++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 59999999999999999999999999999888764322 11111000 000001111 145699999997654
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCc
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRF 300 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf 300 (702)
..++..|+..+++....+..+...........-+.++++|+|+|+.. .+++++++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 34566677888765543322222211110001122499999999988 89999999 87
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=121.72 Aligned_cols=137 Identities=23% Similarity=0.305 Sum_probs=85.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc---cccccc-HHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS---GVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~---~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
.+.+|||+||||||||++|+++|..++.+|+.++...-.. ++.... ...-..++ .+. ..+.+|+|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl-~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFY-EAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHH-HHh-hcCCEEEEeCcCcCCHH
Confidence 3567999999999999999999999999999987431111 111111 01111222 332 23469999999877643
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-----------CCCCccccCCCCcc
Q 045279 233 RENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-----------DAVDPALRRPGRFD 301 (702)
Q Consensus 233 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-----------~~ld~al~r~~Rf~ 301 (702)
. ...|...++.. .+...+ .....+.++.+|+|+|+. ..+++++++ ||
T Consensus 196 v-----------q~~L~~lLd~r--~l~l~g------~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF- 253 (383)
T PHA02244 196 A-----------LIIINSAIANK--FFDFAD------ERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF- 253 (383)
T ss_pred H-----------HHHHHHHhccC--eEEecC------cEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-
Confidence 2 23355555432 111111 111123568999999983 468999999 99
Q ss_pred eEEEeCCCCHHHHHHHH
Q 045279 302 REIVLGVPDENARVQIL 318 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il 318 (702)
..|.+++|+.-+ ..|.
T Consensus 254 v~I~~dyp~~~E-~~i~ 269 (383)
T PHA02244 254 APIEFDYDEKIE-HLIS 269 (383)
T ss_pred EEeeCCCCcHHH-HHHh
Confidence 679999998433 3444
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-10 Score=120.48 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=128.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEechhhhcc
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-----FYKISATEVVSG 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-----~~~i~~~~l~~~ 197 (702)
=+.+.+.+..++++...+...+. | ..+.+++++||||||||++++.+++++... +++|||..+.+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--------~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--------G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--------C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 34599999999999977644332 2 234469999999999999999999998543 899999875443
Q ss_pred c---------------ccccHHHH-HHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 198 V---------------SGASEENI-RDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 198 ~---------------~g~~~~~~-~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
+ .|.....+ ..+++.... ....|+++||+|.|....+ .++-.|+......
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~----- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN----- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc-----
Confidence 1 22222222 223333222 3456899999999986643 2222333322211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcccCC--ccc-H
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLRVEG--SFD-L 333 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~~~~--~~~-~ 333 (702)
..+|.+|+.+|..+ .+||.+.+ +|. ..|.|++++.+|...|+....+...... ..+ +
T Consensus 154 --------------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl 217 (366)
T COG1474 154 --------------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVL 217 (366)
T ss_pred --------------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHH
Confidence 23489999998854 78999988 553 4589999999999999987766432221 112 2
Q ss_pred H---HHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 334 V---KIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 334 ~---~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
. .++....| ..|-...+++.|+..|.+
T Consensus 218 ~lia~~~a~~~G-DAR~aidilr~A~eiAe~ 247 (366)
T COG1474 218 KLIAALVAAESG-DARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHHHHHHcCc-cHHHHHHHHHHHHHHHHh
Confidence 2 22333333 455555667777666644
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-11 Score=132.30 Aligned_cols=173 Identities=27% Similarity=0.338 Sum_probs=132.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
..+++.++|-+.-..++.+.+.+ +...+-+|+|+||+|||.++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34677888888777766665443 334456999999999999999999865 5677888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
+.+.+. .+|.|+.|..++.+.+.+...++.||||||+|.+.+.-+..++ .-++-|-|--.|. ...+-+|+||
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA----RGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA----RGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh----cCCeEEEEec
Confidence 887776 4699999999999999999888999999999999976554332 2344444444442 4556788888
Q ss_pred CCC-----CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC
Q 045279 573 NRP-----DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV 619 (702)
Q Consensus 573 n~~-----~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 619 (702)
+.- -.-|+|+-| ||. .|.+.-|+.++-..|++.+-.++..+..+
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V 355 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGV 355 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCc
Confidence 653 257899999 995 88899999999999999887766555443
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=114.14 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCCCCcccccCHH---HHHHHHHHHhhhhccCCCcccccCCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 117 GKEGPRFQDLGGME---SVLEELKMEVIVPLYHPQLPQWLGVRP-MAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 117 ~~~~~~~~~i~G~~---~~k~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
..+..+|++++--+ .+...+.+.... .+..+ .+.++||||||||||+|++++++..+..+ +...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchh
Confidence 35566899975433 344444443311 12223 36799999999999999999999876533 2211
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
... ...+ ....+|+|||||.+. . . .|...++....
T Consensus 77 ~~~-----------~~~~-----~~~d~lliDdi~~~~-------~----~---~lf~l~N~~~e--------------- 111 (214)
T PRK06620 77 FFN-----------EEIL-----EKYNAFIIEDIENWQ-------E----P---ALLHIFNIINE--------------- 111 (214)
T ss_pred hhc-----------hhHH-----hcCCEEEEeccccch-------H----H---HHHHHHHHHHh---------------
Confidence 110 1111 133699999998431 0 1 23333322211
Q ss_pred CCCCeEEEEEecCCCC--CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHH
Q 045279 273 SKPGYVLVIGATNRPD--AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGAD 347 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~--~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~d 347 (702)
.|..++|+++..|. .+ |++++ |+. .++.+..|+.+++..+++..+....+.-..+ +..++....+ +.+.
T Consensus 112 --~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~ 185 (214)
T PRK06620 112 --KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSK 185 (214)
T ss_pred --cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHH
Confidence 34467777776655 36 88998 884 2689999999999999988877555444333 4556665544 5566
Q ss_pred HHHHHHH
Q 045279 348 LAALANK 354 (702)
Q Consensus 348 l~~l~~~ 354 (702)
+..++..
T Consensus 186 l~~~l~~ 192 (214)
T PRK06620 186 IIEILEN 192 (214)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=115.84 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=94.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe------------------------EEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN------------------------FIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+|||++|+.++..+... +..+.... . .-+...++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 455679999999999999999999987431 22221110 0 012345666666
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ..+.|++|||+|.+. ...++.||..|+.. ...+++|++||.+..+.+++.+ |+ ..+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 6543 346799999999998 67788999999864 3456666677778899999988 88 489
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++...++...
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999988888776
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=134.77 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=118.7
Q ss_pred ceEEEc--CCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhC------CCeEEEEeCc
Q 045279 465 GFLLYG--PPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTC------SPCILFFDEV 531 (702)
Q Consensus 465 ~~ll~G--p~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~------~~~vl~iDEi 531 (702)
+-+..| |++.||||+|+++|+++ +.+++++++++..+ -..+|.+...+... ++.|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999997 56899999998532 23566666544321 2479999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
|.+. ...++.|+..|+... .++.+|++||.++.+-+++.+ || ..+.|++|+.++....++..+.
T Consensus 640 D~Lt-----------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALT-----------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCC-----------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 9998 788999999998643 567888899999999999988 98 5899999999999888888877
Q ss_pred cCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 612 KKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 612 ~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+.++. .+..+..++ ..+++|+|.+++....
T Consensus 704 ~Egi~i~~e~L~~Ia------~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 704 NEGLELTEEGLQAIL------YIAEGDMRRAINILQA 734 (846)
T ss_pred hcCCCCCHHHHHHHH------HHcCCCHHHHHHHHHH
Confidence 65543 233455555 4466788877765543
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=119.99 Aligned_cols=172 Identities=15% Similarity=0.229 Sum_probs=116.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATE 193 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~ 193 (702)
+|++|+|++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 699999999999999887721 2345678999999999999999999987432 2222221
Q ss_pred hhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.+ ..-.-..++.+.+.+. .+...|++||++|.|... ..+.|+..+++
T Consensus 69 --~~-~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEe--------------- 119 (313)
T PRK05564 69 --NK-KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEE--------------- 119 (313)
T ss_pred --cC-CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcC---------------
Confidence 01 0112234555555332 334569999999888643 24468888885
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
.|.++++|.+|+.++.+.|.+++ |+ ..+.|..|+.++....+....... ....+..++..+.|-.+
T Consensus 120 ----pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 120 ----PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred ----CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 24457777777888999999999 98 689999999999888876554321 12234455655555433
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-10 Score=105.86 Aligned_cols=198 Identities=21% Similarity=0.276 Sum_probs=139.4
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
....+.+.+.+|.|++.+++.+.+.-...+ .-.|..++||+|..|||||+++|++-++. +..+++|+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 344456789999999999998865443332 22456789999999999999999998876 667899988
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn 573 (702)
.++.. +-.+++..+..+ +-|||+|++..=.+ +.....|-..|+|- ....||+|.+|+|
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~g----------d~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSFEEG----------DDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCCCCC----------chHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 88754 345666666533 56888898653221 34455566677874 4567999999999
Q ss_pred CCCccCcccc---------C-----------CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHH--HHhhhhcC
Q 045279 574 RPDVMDRAVL---------R-----------PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLH--TIAQSKFC 630 (702)
Q Consensus 574 ~~~~ld~a~~---------r-----------~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~--~la~~~~~ 630 (702)
+.+.|..-+. . ..||...+.|++++.++...|+..+++..+++.+. .++ .+......
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8765542221 1 12999999999999999999999999998877532 232 22222333
Q ss_pred CCCCHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEA 645 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a 645 (702)
.+-||+-..+.++..
T Consensus 263 g~RSGR~A~QF~~~~ 277 (287)
T COG2607 263 GGRSGRVAWQFIRDL 277 (287)
T ss_pred CCCccHhHHHHHHHH
Confidence 466777777666643
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=121.80 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=111.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEE-e-
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHI-K- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i-~- 495 (702)
+..++.+.|.+.++..+...+.. -+.+..+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45788899999998888775532 144567999999999999999999998744 11000 0
Q ss_pred --c-----------cccc---ccC--------cCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 496 --G-----------PELL---NKY--------VGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 496 --~-----------~~l~---~~~--------~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+ +++. ..+ ..-+...+|.+..... .....|++|||+|.+. .
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------R 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------H
Confidence 0 0111 000 0011234455443332 3456799999999998 7
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
...|.||..|+... .++++|+.|+.++.+.|.+.+ |+ ..+.|++|+.++...++....
T Consensus 156 ~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 156 NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhh
Confidence 88899999998743 455666667888888899877 99 599999999999999998743
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-11 Score=112.28 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=113.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-C----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-G----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~----~~~~~i~~~~l 194 (702)
+..++||+|.++.++++..... -....|++|.|||||||||-+.++|+++ | --+.++|+++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~-------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK-------------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH-------------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4479999999999999986552 1233579999999999999999999987 3 23566777663
Q ss_pred hcccccccHHHHHHHHHHHHhhC----CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTA----PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~----p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.. ..-...++ ..|.+-+-.- -.|+++||+|+|....+ +.|.+.|+-+..
T Consensus 90 RG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-----------QAlRRtMEiyS~------------- 142 (333)
T KOG0991|consen 90 RG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-----------QALRRTMEIYSN------------- 142 (333)
T ss_pred cc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhHHH-----------HHHHHHHHHHcc-------------
Confidence 21 11112222 3444433222 24999999999975432 235555554322
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCC
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPG 342 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g 342 (702)
..++..+||..+.+-..+.+ |+ ..+.+...+..+.+.-+....+...+.... .+..+.-...|
T Consensus 143 ------ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 143 ------TTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred ------cchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 25788899999998888988 87 567777777777666665555554443322 34444443343
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=123.80 Aligned_cols=158 Identities=26% Similarity=0.327 Sum_probs=96.7
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEEe----c
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------FYKIS----A 191 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~i~----~ 191 (702)
++++.+.+...+.+...+ ..+.+++|+||||||||++|+.+|..+... ++.++ .
T Consensus 174 l~d~~i~e~~le~l~~~L---------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHH---------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 677888888887776554 235789999999999999999999988431 12222 1
Q ss_pred hhhhcccc----ccc--HHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc--cCC
Q 045279 192 TEVVSGVS----GAS--EENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL--VQP 261 (702)
Q Consensus 192 ~~l~~~~~----g~~--~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--~~~ 261 (702)
.+++.++. |.. ......++..|... .|.+||||||+.... .++...++..++.-.+. ...
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 23333321 111 11233445556543 578999999975442 23445566666632110 000
Q ss_pred CCCCCC-CCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcceEEEeCC
Q 045279 262 GDQKSK-SDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 262 ~~~~~~-~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~~~~ 308 (702)
.-..+. .......|.++.||||+|..+ .+|.|++| || ..|.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 000000 011234578899999999987 79999999 99 5566665
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=116.64 Aligned_cols=185 Identities=26% Similarity=0.387 Sum_probs=126.0
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-cccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-VSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-~~g~ 201 (702)
.-|+|++++|+.+.-++....++.++-..+.- -.|.|+|.+||+|+|||-+||-||+..+.||+.+.++.+..- |+|.
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 35899999999998777776666665544432 267899999999999999999999999999988776633210 0000
Q ss_pred --------------------------------------------------------------------------------
Q 045279 202 -------------------------------------------------------------------------------- 201 (702)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (702)
T Consensus 95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe 174 (444)
T COG1220 95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE 174 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence
Q ss_pred ---------------------cHHHHHHHHHHHH---------------------------------------hhCCceE
Q 045279 202 ---------------------SEENIRDLFSKAY---------------------------------------RTAPSIV 221 (702)
Q Consensus 202 ---------------------~~~~~~~~f~~a~---------------------------------------~~~p~il 221 (702)
...++..+|..+. ..+..|+
T Consensus 175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIv 254 (444)
T COG1220 175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIV 254 (444)
T ss_pred EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeE
Confidence 0011222222221 0123499
Q ss_pred EechhhHhhhcchhhhHHHHH-HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec----CCCCCCCccccC
Q 045279 222 FIDEIDAIASKRENLQREMER-RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT----NRPDAVDPALRR 296 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at----n~~~~ld~al~r 296 (702)
||||||.++...+....+.++ -+...||..+++.......|.. ...++++||+. ..|.+|-|.|.-
T Consensus 255 FIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~V---------kTdHILFIasGAFh~sKPSDLiPELQG 325 (444)
T COG1220 255 FIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPV---------KTDHILFIASGAFHVAKPSDLIPELQG 325 (444)
T ss_pred EEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccccc---------ccceEEEEecCceecCChhhcChhhcC
Confidence 999999999877543323333 3445677777765433222221 23569999986 447788899966
Q ss_pred CCCcceEEEeCCCCHHHHHHHHH
Q 045279 297 PGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 297 ~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+-.+++...+.++...||.
T Consensus 326 --RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 --RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred --CCceEEEcccCCHHHHHHHHc
Confidence 999999999999999999985
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=112.43 Aligned_cols=164 Identities=12% Similarity=0.174 Sum_probs=100.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
..++||||||||||++++++++..+..++. .... ....+ ....+|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999877653322 1000 00111 134799999999552
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc--cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCCCCCC-
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFVIGATNRPDV--MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKPIDDS- 618 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~--ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~- 618 (702)
...+-.+++.+. .....+||+++..|.. + +++.+ |+. .++.+..|+.+++..+++..+...++..+
T Consensus 99 ---~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---EPALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---HHHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 233334444432 2344667766655543 5 77776 885 36899999999999999988876555433
Q ss_pred CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 619 VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 619 ~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
.-++.++.. + .-+.+.+.+++......+... ...||...+.+++
T Consensus 170 ev~~~L~~~--~-~~d~r~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l 213 (214)
T PRK06620 170 QIIDFLLVN--L-PREYSKIIEILENINYFALIS------------KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHH--c-cCCHHHHHHHHHHHHHHHHHc------------CCCCCHHHHHHHh
Confidence 335666632 1 223445555555432211111 1258888887775
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=114.94 Aligned_cols=168 Identities=21% Similarity=0.359 Sum_probs=102.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
...++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+....+ ...+|+||+++.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 3458999999999999999999864 5678899988877654332111 1222222222 567999999999984
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+ ...+..|...++......+.+||.+...|. .+++.+.+ ||. ..+.+..|+.+.|..|++.++.
T Consensus 112 ~---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 K---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 3 223344444444433344555555545555 35666666 875 4788899999999999999999
Q ss_pred cCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 612 KKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 612 ~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..++.-+.+ ++.++.. . .-+-++|..+++...
T Consensus 181 ~~~~~l~~~v~~~l~~~--~-~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARR--F-RRDVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHH--T-TSSHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHh--h-cCCHHHHHHHHHHHH
Confidence 887765444 3455532 1 225566666666544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=121.82 Aligned_cols=154 Identities=29% Similarity=0.316 Sum_probs=107.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhC------------------------CeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAG------------------------ANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~------------------------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
+..+||+||||+|||++|.++|+.+. ..++++++++.... .-....++.+-...
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~ 101 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFL 101 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHh
Confidence 33599999999999999999999885 57888888775442 12334455554443
Q ss_pred Hh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 519 RT----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 519 ~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
.. ....|++|||+|.+. ....+.++..|+.. ..++.+|++||.+..+-+.+.+ |+ ..+.|
T Consensus 102 ~~~~~~~~~kviiidead~mt-----------~~A~nallk~lEep--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f 165 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLEEP--PKNTRFILITNDPSKILPTIRS--RC-QRIRF 165 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhccC--CCCeEEEEEcCChhhccchhhh--cc-eeeec
Confidence 22 356899999999999 78999999999854 4567788889999999998887 88 47888
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL 650 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~ 650 (702)
++|+........+ +..+..++ ..+++|++..++.....+.
T Consensus 166 ~~~~~~~~i~~~e----------~~~l~~i~------~~~~gd~r~~i~~lq~~~~ 205 (325)
T COG0470 166 KPPSRLEAIAWLE----------DQGLEEIA------AVAEGDARKAINPLQALAA 205 (325)
T ss_pred CCchHHHHHHHhh----------ccchhHHH------HHHHHHHHcCCCHHHHHHH
Confidence 8766554443333 22333343 2245666665554443333
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-10 Score=123.24 Aligned_cols=168 Identities=17% Similarity=0.243 Sum_probs=107.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHH---HHHHHHHHHHhhCCceEEechhhHh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEE---NIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~---~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
.++++|||++|+|||+|++++++.+ +..++++++.++...+...... .+..+.... ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4679999999999999999999865 4678899998877655433222 111111111 24569999999988
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEE
Q 045279 230 ASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REI 304 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i 304 (702)
..... ....|...++.... .+..+||.+...|. .+++++.+ ||. ..+
T Consensus 219 ~~k~~---------~~e~lf~l~N~~~~-----------------~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 219 SYKEK---------TNEIFFTIFNNFIE-----------------NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred cCCHH---------HHHHHHHHHHHHHH-----------------cCCcEEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 64321 11223333333221 12233443333444 46789988 884 567
Q ss_pred EeCCCCHHHHHHHHHHhhcCccc--CCc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 305 VLGVPDENARVQILSVLTRNLRV--EGS-FDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 305 ~~~~p~~~er~~Il~~~~~~~~~--~~~-~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..|+.++|.+|++..++.... ... ..+..++....| +.|.+..++.++.
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 89999999999999988876443 122 235556666655 7777777777654
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=111.15 Aligned_cols=122 Identities=24% Similarity=0.338 Sum_probs=80.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC----CeEEEechhhhcccccccHHHHHHHHHHH----HhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV----PFYKISATEVVSGVSGASEENIRDLFSKA----YRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~ 228 (702)
|..++||+||+|||||.+|+++|+.+.. +++.++++.+..+. .....+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5578999999999999999999999985 99999999987621 0011111111111 011113999999999
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD 288 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~ 288 (702)
+.+..+...+.....+.+.||..+++.......+. .. .-.+++||+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~-----~v---d~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGR-----TV---DTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCC-----EE---EGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccce-----EE---EeCCceEEEeccccc
Confidence 99864444556667788899999997543211110 11 124599999999744
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=130.65 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=123.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH-----------hCCCeEEE
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE-----------TGVPFYKI 189 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~-----------l~~~~~~i 189 (702)
.+|++|+|.+..++++.+.+.. -.....+|||+|++||||+++|++|-.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4799999999999999887733 2344578999999999999999999776 45799999
Q ss_pred echhhhccc-----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 190 SATEVVSGV-----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 190 ~~~~l~~~~-----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
||+.+.... .| .....-.++|+.|.+ .+||||||+.|....+ ..|+..+++..
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ-----------TRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH-----------HHHHhhhhcCe
Confidence 999875431 11 111112346666643 3999999998875433 34666666422
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--C-----CCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcC-
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPD--A-----VDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRN- 324 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~--~-----ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~- 324 (702)
. ...|+. ...+-++++|++||..- . +.+.+.. |+ ..+.+..|+..+|.+ ++..++..
T Consensus 351 ~-~r~G~~-------~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 351 V-TRVGGH-------QPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred E-EecCCC-------ceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 1 111111 11234589999998732 1 2223333 44 457888888877764 33444443
Q ss_pred ---cccCCcccH--------HHHH-hhCCCCCHHHHHHHHHHHHH
Q 045279 325 ---LRVEGSFDL--------VKIA-RSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 325 ---~~~~~~~~~--------~~la-~~t~g~~~~dl~~l~~~a~~ 357 (702)
.......+. ..+. ..++| +.++|++++.+++.
T Consensus 420 ~~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i 463 (538)
T PRK15424 420 LAALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLAL 463 (538)
T ss_pred HHHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHH
Confidence 222111111 1122 22344 77889888887765
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-11 Score=123.63 Aligned_cols=165 Identities=23% Similarity=0.410 Sum_probs=104.9
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCCeE-------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-------GVPFY------- 187 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~------- 187 (702)
-|..|+|++++|..+.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4889999999999887544221 24679999999999999999999887 22221
Q ss_pred --EEech-------------------hhhc-----ccccccHHH----------HHHHHHHHHhhCCceEEechhhHhhh
Q 045279 188 --KISAT-------------------EVVS-----GVSGASEEN----------IRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 188 --~i~~~-------------------~l~~-----~~~g~~~~~----------~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
..+|. ++.. ...|..... -.+++..| .+.+|||||++.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~ 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH
Confidence 11111 1111 112221100 01222222 235999999998764
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCC
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPD 310 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~ 310 (702)
. ....|+..|++....+...+ .....+.++++|+++|+.+ .+++++.. ||...+.++.|.
T Consensus 146 ~-----------~Q~~Ll~~l~~g~~~v~r~G------~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~ 206 (337)
T TIGR02030 146 H-----------LVDVLLDVAASGWNVVEREG------ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVR 206 (337)
T ss_pred H-----------HHHHHHHHHHhCCeEEEECC------EEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCC
Confidence 3 33457777764321111111 1112345689999999865 79999999 999899999997
Q ss_pred H-HHHHHHHHHh
Q 045279 311 E-NARVQILSVL 321 (702)
Q Consensus 311 ~-~er~~Il~~~ 321 (702)
. +++.+|++..
T Consensus 207 ~~eer~eIL~~~ 218 (337)
T TIGR02030 207 DVELRVEIVERR 218 (337)
T ss_pred CHHHHHHHHHhh
Confidence 6 8899999764
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-10 Score=118.58 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=119.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY------------- 187 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~------------- 187 (702)
-++++|+|++.+++.+...+.. -+-++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 3899999999999999987732 234567999999999999999999998732110
Q ss_pred -----EEechhhhcc-------------ccc------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHH
Q 045279 188 -----KISATEVVSG-------------VSG------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQRE 239 (702)
Q Consensus 188 -----~i~~~~l~~~-------------~~g------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~ 239 (702)
.-+|..+..+ ..+ -....++.+.+.+. .+.+.|++|||+|.+...
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------- 156 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------- 156 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-------
Confidence 0001111000 000 01233444444332 345779999999988633
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 240 MERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 240 ~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
..+.|+..+++. +++.++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.
T Consensus 157 ----aanaLLK~LEep-------------------p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 157 ----AANALLKVLEEP-------------------PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALA 210 (365)
T ss_pred ----HHHHHHHHHhcC-------------------CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHH
Confidence 345688888752 4457788889999899999998 98 779999999999998887
Q ss_pred HhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 320 VLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
...... ....+..++..+.| +++....++
T Consensus 211 ~~~~~~---~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 211 AAGPDL---PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HhcccC---CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 653211 11122455555555 443334443
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-11 Score=125.86 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=105.9
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--ccccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGAS 202 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~ 202 (702)
.++|.++++..+...+ ..+.++||.||||||||++|+.+|..++.+|+.+.|..-... ..|..
T Consensus 25 ~~~g~~~~~~~~l~a~---------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLAL---------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHH---------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 3778777776665433 346789999999999999999999999999999999854322 22222
Q ss_pred HHHHH------------HHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 203 EENIR------------DLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 203 ~~~~~------------~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.-... .+|.... +++|+|||+...+. +.+.|+..|++....+.....
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~------ 148 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTT------ 148 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCC------
Confidence 11111 1111111 39999999876643 445688888876553332221
Q ss_pred CCCCCCeEEEEEecCC-----CCCCCccccCCCCcceEEEeCCC-CHHHHHHHHHHh
Q 045279 271 SDSKPGYVLVIGATNR-----PDAVDPALRRPGRFDREIVLGVP-DENARVQILSVL 321 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~-----~~~ld~al~r~~Rf~~~i~~~~p-~~~er~~Il~~~ 321 (702)
..-+..++||+|+|+ ...+++++++ ||...+.+++| +..+...++...
T Consensus 149 -~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 149 -IRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred -cCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 122445899999995 3468999999 99888999999 555454444433
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=109.27 Aligned_cols=110 Identities=29% Similarity=0.388 Sum_probs=73.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc------cCcCchHHH--HHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN------KYVGESELA--VRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~------~~~g~~~~~--~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+++|+||||||||++|+.+|+.++.+++.+.++.... .|.-..... ....+..+.. .++|+||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 5899999999999999999999999999998765332 221100000 0000111111 67899999999888
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCC-----------CCC------cEEEEEecCCCC----ccCccccCCCcc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGAD-----------KRK------GVFVIGATNRPD----VMDRAVLRPGRF 588 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~------~~~vI~atn~~~----~ld~a~~r~gRf 588 (702)
..++..|+..++... ... ++.+|+|+|... .+++++++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 778888888777521 111 389999999988 89999999 87
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=119.89 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=101.8
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-------CCeEE--------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------GANFI-------- 492 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~-------- 492 (702)
|..|+|++.+|..+.-.... +...+++|.|+||+|||+++++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 67789999998876443221 224679999999999999999999876 22221
Q ss_pred -----EE--ec-------------cccc-----ccCcCchH--HH--------HHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 493 -----HI--KG-------------PELL-----NKYVGESE--LA--------VRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 493 -----~i--~~-------------~~l~-----~~~~g~~~--~~--------~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.. .. .++- +..+|... .. ...++.+ ...++|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCC--
Confidence 00 00 0100 01222210 00 0111222 245899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCCH-HHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPTP-DERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~~-~~r~~ 604 (702)
..+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|.. +++.+
T Consensus 145 ---------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 145 ---------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ---------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 788888888886421 234678888888655 68889998 9999999999975 88888
Q ss_pred HHHHH
Q 045279 605 ILEAL 609 (702)
Q Consensus 605 il~~~ 609 (702)
|++..
T Consensus 214 IL~~~ 218 (337)
T TIGR02030 214 IVERR 218 (337)
T ss_pred HHHhh
Confidence 98874
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=123.12 Aligned_cols=201 Identities=21% Similarity=0.228 Sum_probs=128.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEeccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELL 500 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~l~ 500 (702)
...+.+++|-..--+.+.+.+.. --+...++|++|++||||+.+|++|... ...||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34566777777665555554433 1244678999999999999999999753 36799999998876
Q ss_pred cc-------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------
Q 045279 501 NK-------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA------- 560 (702)
Q Consensus 501 ~~-------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~------- 560 (702)
.. |.| ....-..+|+.| ..++||+|||..+. ...+..|++.|+..
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A---~GGtLfLDEI~~LP-----------~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQA---NGGTLFLDEIHRLP-----------PEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheec---CCCEEehhhhhhCC-----------HhHHHHHHHHHHcCceEecCC
Confidence 43 222 122234566666 56899999999999 78888999988862
Q ss_pred --CCCCcEEEEEecCC--CCccCc--cccCCCccceEEEcCCCCHH--HHHHHHHHHhc----cCCCCCCCCHHHHhhhh
Q 045279 561 --DKRKGVFVIGATNR--PDVMDR--AVLRPGRFGKLLYVPLPTPD--ERGLILEALAR----KKPIDDSVDLHTIAQSK 628 (702)
Q Consensus 561 --~~~~~~~vI~atn~--~~~ld~--a~~r~gRf~~~i~~~~p~~~--~r~~il~~~~~----~~~~~~~~~~~~la~~~ 628 (702)
....+|.+|+|||. .+.+-. .+.+ -|+...|.+|+...+ ++..+++++++ +.+.....+.......-
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 23456889999875 233433 4443 155556666655543 34444455544 34433333332222212
Q ss_pred cCCCCCH--HHHHHHHHHHHHHHHHH
Q 045279 629 FCENLSG--ADLAAMMNEAAMAALED 652 (702)
Q Consensus 629 ~~~~~sg--~dl~~~~~~a~~~a~~~ 652 (702)
....|.| ++|+|+|+.++..+...
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 2234555 99999999999777543
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=122.90 Aligned_cols=126 Identities=22% Similarity=0.459 Sum_probs=82.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEEec----ccccccC----cCch--HHHHHHHHHHHHhC--C
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHIKG----PELLNKY----VGES--ELAVRTLFSRARTC--S 522 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~----~~l~~~~----~g~~--~~~~~~~f~~a~~~--~ 522 (702)
...+++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|.. ...+..++..|... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3578999999999999999999998742 1233332 2333222 1211 11234555667643 4
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC--------------------CCCCCcEEEEEecCCCC----cc
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG--------------------ADKRKGVFVIGATNRPD----VM 578 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~--------------------~~~~~~~~vI~atn~~~----~l 578 (702)
|.||||||++.... .+++.++++.|+. +.-..++.||+|+|..+ .+
T Consensus 273 ~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCH----------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 78999999998763 3444455554441 33456899999999987 89
Q ss_pred CccccCCCccceEEEcCC-CCHH
Q 045279 579 DRAVLRPGRFGKLLYVPL-PTPD 600 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~-p~~~ 600 (702)
|.|++| ||. .|.+.+ ++..
T Consensus 343 D~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 343 DYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred cHHHHh--hhh-eEEecCCCChH
Confidence 999999 996 444443 4543
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-11 Score=130.37 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=122.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~ 197 (702)
.+|++|+|....++++.+.+.. -.....+|||+|++||||+++|++|.... +.||+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 5799999999999998887743 23445789999999999999999997653 579999999877532
Q ss_pred -----ccc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 198 -----VSG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 198 -----~~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
..| .....-.++|+.|.+ .+||||||+.|....+ ..|+..+++... ...|+.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~-~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ-----------TRLLRVLEEREV-VRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH-----------HHHHHHHhcCcE-EecCCC
Confidence 111 111112456666643 4999999998885433 346666654221 111111
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCC--CCCc-----cccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc----cCC
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPD--AVDP-----ALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR----VEG 329 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~--~ld~-----al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~----~~~ 329 (702)
...+-++++|++|+..- .+.. .|.. |+ ..+.+..|+..+|.+ ++..++.... ...
T Consensus 343 -------~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 343 -------EPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred -------ceeeecceEEeccCCCHHHHhhhcchhHHHHH--hc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11234579999997742 2222 2323 44 346777888777654 3344444321 111
Q ss_pred cccH-HH-------HH-hhCCCCCHHHHHHHHHHHHHH
Q 045279 330 SFDL-VK-------IA-RSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~~~~-~~-------la-~~t~g~~~~dl~~l~~~a~~~ 358 (702)
..+. .. +. ..++| +.++|++++.+++..
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPG-NVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHh
Confidence 1111 11 22 22343 678888888877654
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-10 Score=118.35 Aligned_cols=152 Identities=16% Similarity=0.276 Sum_probs=111.3
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------eEEEEeccc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------NFIHIKGPE 498 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------~~~~i~~~~ 498 (702)
.|+++.|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|..+.+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 578999999998888775522 245567899999999999999999997633 222332210
Q ss_pred ccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 499 LLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+. .-+...+|.+.+.+. .....|++||++|.+. ....|.||..|+.. ..++++|++|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 11 112334666666443 3456799999999998 88899999999964 456666667788
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
++.+-|.+.+ |+ .++.|+.|+.++...++...+
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8999999988 88 599999999998877776554
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=104.59 Aligned_cols=122 Identities=34% Similarity=0.479 Sum_probs=83.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCe---EEEEeccccccc--------------CcCchHHHHHHHHHHHHhCCCeE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGAN---FIHIKGPELLNK--------------YVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~~--------------~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
+.+++|+||||||||++++.+|..+... ++.++++..... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999998764 888887764432 22345666778888898877899
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHH------hhhCCCCCCcEEEEEecCC-CCccCccccCCCccceEEEcCCC
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLI------ELDGADKRKGVFVIGATNR-PDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~------~l~~~~~~~~~~vI~atn~-~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
|||||++.+.... ...... .........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999988432 111111 0111123456778888887 3334444444 88888877654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.6e-10 Score=121.12 Aligned_cols=214 Identities=24% Similarity=0.268 Sum_probs=136.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhc--cCCCcc-------------------cccCCCCCceEEEECCCCCCHHHHHHHH
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPL--YHPQLP-------------------QWLGVRPMAGILLYGPPGCGKTKLAHAI 178 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~--~~~~~~-------------------~~~~~~~~~~vLl~GppGtGKT~la~~l 178 (702)
...|.||.|-+.+=+.+..++..+- -+.+-+ ...+.++.+-+||+||||-||||||+.|
T Consensus 267 Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 267 PKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVI 346 (877)
T ss_pred hhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHH
Confidence 3479999999998888877775321 111000 1113345667999999999999999999
Q ss_pred HHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH--------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 179 ANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY--------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 179 a~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
|+..|..++.||+++-. +...++..+..|. ...|..|+|||||--. ...++.++.
T Consensus 347 AkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvils 409 (877)
T KOG1969|consen 347 AKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILS 409 (877)
T ss_pred HHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHH
Confidence 99999999999999843 2333444444443 2568899999997333 334555655
Q ss_pred HHhhhcc-ccCCCCC-----CCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 251 CMDESHR-LVQPGDQ-----KSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 251 ~ld~~~~-~~~~~~~-----~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.+..-.. .+..... ..+....... -||+.||... -|+|+.---|..++.|.+|+..-..+-|+.++..
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R----PIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTR----PIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccC----CEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 5542111 1111111 1111111222 2777788754 4666432257788999999999999999988877
Q ss_pred cccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 045279 325 LRVEGSF-DLVKIARSTPGFVGADLAALANKAGNLAM 360 (702)
Q Consensus 325 ~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a~ 360 (702)
.....+. .+..|+..+.+ |++..++....++.
T Consensus 484 E~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 484 ENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred hcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 7654432 36667766665 78777776655553
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-10 Score=113.72 Aligned_cols=68 Identities=41% Similarity=0.503 Sum_probs=46.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~ 195 (702)
....+.++|+.++.+..--.+ ..++. +.-.++++||.||||||||+||-+||++|+ .||..++++++.
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv-~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIV-DMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHH-HHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eeccccccChHHHHHHHHHHH-HHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 334678999999998876333 33322 344678999999999999999999999996 688777777544
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=117.09 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=121.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------- 185 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------- 185 (702)
.|++|+|++.+++.+...+.. -+-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999999987732 1345789999999999999999999987322
Q ss_pred --eEEEechhhhccc---------cc--------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHH
Q 045279 186 --FYKISATEVVSGV---------SG--------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMER 242 (702)
Q Consensus 186 --~~~i~~~~l~~~~---------~g--------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 242 (702)
++.+.+.....+. .| -.-..++.+.+.+. .+...|++||++|.|...
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~---------- 139 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA---------- 139 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH----------
Confidence 1222221111110 00 00123444444432 234569999999988643
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 243 ~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
..+.||..+++- | +.++|..|+.++.+-|.+++ |+ ..+.|+.|+.++..+++....
T Consensus 140 -aaNaLLK~LEEP-------------------p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 140 -AANALLKTLEEP-------------------G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred -HHHHHHHHHhCC-------------------C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 345688888862 3 46777888899999999999 98 779999999999999998754
Q ss_pred cCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 323 RNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 323 ~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..... ..+...++....| +++....++.
T Consensus 196 ~~~~~--~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 196 DEEIL--NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred ccccc--hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 32111 1123556666666 4444444443
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=130.48 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=104.2
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh--------------------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------------------- 487 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------------------- 487 (702)
|..|+|++.++..+.-.... +...|+||.|++|||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 67889999888766432221 122579999999999999999999987
Q ss_pred ---------------CCeEEEEecccccccCcCch--HHHH--------HHHHHHHHhCCCeEEEEeCcchhhcccCCCC
Q 045279 488 ---------------GANFIHIKGPELLNKYVGES--ELAV--------RTLFSRARTCSPCILFFDEVDALTTKRGKEG 542 (702)
Q Consensus 488 ---------------~~~~~~i~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~ 542 (702)
..+|+.+.++......+|.- +..+ ..++.. ...+||||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC-------
Confidence 24566655443333333321 1101 011111 244799999999999
Q ss_pred chHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHHHHHHH
Q 045279 543 GWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGLILEAL 609 (702)
Q Consensus 543 ~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~il~~~ 609 (702)
..+++.|+..|+... ...+++||+|+|..+ .+.++++. ||+..|.++.+. .+++.+|++..
T Consensus 140 ----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 888999999887421 124688999988643 57888888 999989888775 57777777654
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=116.37 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=106.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------CeEEEEe--
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIHIK-- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~i~-- 495 (702)
...|.+|+|++++|..|...... +...|+||.||+|||||++|++++..+. .+|....
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34689999999999887654332 2346899999999999999999988662 2222000
Q ss_pred ----cccccc---------------cC----cCchHHH------HHHHHHHH---------HhCCCeEEEEeCcchhhcc
Q 045279 496 ----GPELLN---------------KY----VGESELA------VRTLFSRA---------RTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 496 ----~~~l~~---------------~~----~g~~~~~------~~~~f~~a---------~~~~~~vl~iDEid~l~~~ 537 (702)
+++..+ ++ .|-++.. +...|... .....++||+||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 000000 00 0112221 11122111 12245899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~ 604 (702)
..+++.|+..|+.. ....++++|++.|..+ .+.++++. ||...+.+..|+ .+++.+
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 78888888887641 1234678888888655 58888888 999999999998 588999
Q ss_pred HHHHHh
Q 045279 605 ILEALA 610 (702)
Q Consensus 605 il~~~~ 610 (702)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998753
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=121.24 Aligned_cols=132 Identities=33% Similarity=0.479 Sum_probs=94.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc--CcCchHHHHH------------HHHHHHHhCCCeEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELAVR------------TLFSRARTCSPCILF 527 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~--~~g~~~~~~~------------~~f~~a~~~~~~vl~ 527 (702)
...++||.||||||||++|+.+|..++.+|+.+.+...+.. .+|...-... -+|.... +|+|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 45789999999999999999999999999999998754432 1121111110 0111111 4999
Q ss_pred EeCcchhhcccCCCCchHHHHHHHHHHHhhhC----------CCCCCcEEEEEecCC-----CCccCccccCCCccceEE
Q 045279 528 FDEVDALTTKRGKEGGWVVERLLNQLLIELDG----------ADKRKGVFVIGATNR-----PDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~----------~~~~~~~~vI~atn~-----~~~ld~a~~r~gRf~~~i 592 (702)
+|||+... ..+++.|+..|+. ..-....+||+|+|. -..+.+|+++ ||...+
T Consensus 118 ~DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 99999988 8889999998887 122356788888893 4568899999 998899
Q ss_pred EcCCCC-HHHHHHHHHHHh
Q 045279 593 YVPLPT-PDERGLILEALA 610 (702)
Q Consensus 593 ~~~~p~-~~~r~~il~~~~ 610 (702)
+++.|+ .++...++....
T Consensus 185 ~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 185 YVDYPDSEEEERIILARVG 203 (329)
T ss_pred ecCCCCchHHHHHHHHhCc
Confidence 999994 444544444433
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=123.43 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=116.5
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc----
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV---- 198 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~---- 198 (702)
|+|....++++.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467777777777766332 3456779999999999999999996654 4799999998764321
Q ss_pred -cccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 199 -SGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 199 -~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.|.. .....++|+.|. ..+||||||+.|....+ ..|+..++... +...|+.
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~------ 128 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ-----------EKLLRVIEYGE-FERVGGS------ 128 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH-----------HHHHHHHHcCc-EEecCCC------
Confidence 1110 001123455553 35999999998875433 34666665421 1111111
Q ss_pred CCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC----Ccc
Q 045279 271 SDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE----GSF 331 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~----~~~ 331 (702)
...+.++++|++|+.. ..+.+.|.. || ..+.+..|+..+|.+ ++..++..+ ... ...
T Consensus 129 -~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~ 204 (329)
T TIGR02974 129 -QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTP 204 (329)
T ss_pred -ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 1123458999999863 134455555 66 446778888777655 333333321 111 111
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
.+..+....=-.+.++|++++..++..+
T Consensus 205 ~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 205 QAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 1233333322237788888887776543
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-10 Score=113.37 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=52.7
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||+|.|. -+-++-|=+.|+.. ---+||+|||+ |+.++..|+. |+
T Consensus 278 vpGVLFIDEvHmLD-----------iEcFsfLnralEs~---~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl- 340 (398)
T PF06068_consen 278 VPGVLFIDEVHMLD-----------IECFSFLNRALESE---LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL- 340 (398)
T ss_dssp EE-EEEEESGGGSB-----------HHHHHHHHHHHTST---T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-
T ss_pred ecceEEecchhhcc-----------HHHHHHHHHHhcCC---CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-
Confidence 47899999999998 66666666666642 22378889995 4567777877 87
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
.+|...+++.++..+|++..++...+.
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 588899999999999999999987665
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-11 Score=111.10 Aligned_cols=128 Identities=23% Similarity=0.421 Sum_probs=81.8
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-----
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----- 197 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----- 197 (702)
|+|.+..++++.+.+... ...+.+|||+|++||||+.+|++|-+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 578888888888777443 3445789999999999999999998765 479999999887433
Q ss_pred ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 198 VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 198 ~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
..|.. ...-.++|+.|.++ +||||||+.|....+ ..|+..++... +...|+..
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~~----- 129 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ-----------AKLLRVLEEGK-FTRLGSDK----- 129 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH-----------HHHHHHHHHSE-EECCTSSS-----
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHHHHH-----------HHHHHHHhhch-hccccccc-----
Confidence 11211 01123678887555 999999999886543 35777776422 22222211
Q ss_pred CCCCCCeEEEEEecCC
Q 045279 271 SDSKPGYVLVIGATNR 286 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~ 286 (702)
..+-++++|++|+.
T Consensus 130 --~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 130 --PVPVDVRIIASTSK 143 (168)
T ss_dssp --EEE--EEEEEEESS
T ss_pred --cccccceEEeecCc
Confidence 12346999999986
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=112.06 Aligned_cols=102 Identities=31% Similarity=0.497 Sum_probs=77.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHH-HHHHHHHHHH----hhCCceEEechhhHhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEE-NIRDLFSKAY----RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~-~~~~~f~~a~----~~~p~il~iDEid~l~~ 231 (702)
..||||.||+|+|||.||+.||+.+++||...+|+.|.. +|+|+.-. -+..++..|. +.+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 468999999999999999999999999999999999965 58887644 4556666553 23456999999999984
Q ss_pred cchhh---hHHHHHHHHHHHHHHHhhhcccc
Q 045279 232 KRENL---QREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 232 ~~~~~---~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..... .+-.+.-+.+.||..+++.-..+
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnV 336 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNV 336 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcc
Confidence 43221 12234566778999999865555
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=123.88 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=96.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----------------- 183 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----------------- 183 (702)
..|+++.|++.+++.+... +....+++|+||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 4899999999998776633 34567899999999999999999987542
Q ss_pred -----------CCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 184 -----------VPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 184 -----------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.||...+++.......|.....-.+.+..|.+ .+|||||++.+.. .++..|+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-----------~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-----------SVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-----------HHHHHHHHHH
Confidence 12222222221111112111111234444433 4999999987653 3455677777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-----C------------------CCCccccCCCCcceEEEeCCC
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-----D------------------AVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-----~------------------~ld~al~r~~Rf~~~i~~~~p 309 (702)
+.....+... ......+.++++|+++|+. . .++..|+. ||+-.+.++.+
T Consensus 320 E~~~v~i~r~------g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~ 391 (499)
T TIGR00368 320 EDGSISISRA------SAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLL 391 (499)
T ss_pred HcCcEEEEec------CcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCC
Confidence 6432111111 1111235569999999973 1 47777888 99988888888
Q ss_pred CHH
Q 045279 310 DEN 312 (702)
Q Consensus 310 ~~~ 312 (702)
+..
T Consensus 392 ~~~ 394 (499)
T TIGR00368 392 PPE 394 (499)
T ss_pred CHH
Confidence 765
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=109.14 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=100.2
Q ss_pred CCCCCcccccC---HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 118 KEGPRFQDLGG---MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G---~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+..+|++++. ...+...+.+.. + .....++|+||+|+|||+|+++++...+.. +++...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~ 78 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWP-------------N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEI 78 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhcc-------------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHc
Confidence 45568999874 333444332211 1 123459999999999999999999876544 4444332
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. .++..... .+|+|||++.+... + ..|...++....
T Consensus 79 ~~-----------~~~~~~~~---~~l~iDDi~~~~~~----~--------~~lf~l~n~~~~----------------- 115 (226)
T PRK09087 79 GS-----------DAANAAAE---GPVLIEDIDAGGFD----E--------TGLFHLINSVRQ----------------- 115 (226)
T ss_pred ch-----------HHHHhhhc---CeEEEECCCCCCCC----H--------HHHHHHHHHHHh-----------------
Confidence 11 11112111 38999999876321 1 113333333221
Q ss_pred CCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCC
Q 045279 275 PGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTP 341 (702)
Q Consensus 275 ~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~ 341 (702)
.+..+||+++..+. ...|.+++ ||. .++.+..|+.++|.+|++..+....+....+ +..+++...
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 23466776665544 23688988 874 6789999999999999999887765544433 455665554
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-11 Score=108.30 Aligned_cols=113 Identities=31% Similarity=0.481 Sum_probs=63.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-hhh-cccc---------cccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISAT-EVV-SGVS---------GASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~-~l~-~~~~---------g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
||||.|+||+|||++|+++|+.++..|..|.++ ++. +... +...-.-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 699999999999999999999999999888775 221 1111 11111111122 13999999987
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCc
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRF 300 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf 300 (702)
..++. ...|+..|.+.+.-+. +.....|..++||||.|+.+ .++.+++. ||
T Consensus 74 appkt-----------QsAlLeam~Er~Vt~~--------g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APPKT-----------QSALLEAMEERQVTID--------GQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-HHH-----------HHHHHHHHHHSEEEET--------TEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCHHH-----------HHHHHHHHHcCeEEeC--------CEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 77554 3468888887655322 11222355589999999976 68888888 88
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=125.05 Aligned_cols=231 Identities=12% Similarity=0.132 Sum_probs=133.0
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE-Eeccc--
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH-IKGPE-- 498 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~-- 498 (702)
...+..++++.+.+.....+..++... .++..+..-++|+||||||||++++++|+.++..+++ ++...
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 334567788998888777776655332 1122334458999999999999999999988765544 11110
Q ss_pred -ccccC------------cCchHHHHHHHHHHHHh----------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 499 -LLNKY------------VGESELAVRTLFSRART----------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 499 -l~~~~------------~g~~~~~~~~~f~~a~~----------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
....| +......++.++..+.. ....||||||++.+... . ...+..+|.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-------HHHHHHHHH
Confidence 00000 11223334555555541 24569999999987632 1 234555555
Q ss_pred -hhhCCCCCCcEEEEEecC-CCC--------------ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC--C
Q 045279 556 -ELDGADKRKGVFVIGATN-RPD--------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID--D 617 (702)
Q Consensus 556 -~l~~~~~~~~~~vI~atn-~~~--------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~ 617 (702)
.... ...+.+|++++ .+. .+.++++...|+ .+|.|++.......+.|+..+...... .
T Consensus 221 ~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 2221 22333444333 121 133667643345 379999999999888887777654221 1
Q ss_pred C------CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 618 S------VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 618 ~------~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+ ..+..++ ..++||+|.+|+.....+.... ..........++..|...+..+..+
T Consensus 297 ~~~~p~~~~l~~I~------~~s~GDiRsAIn~LQf~~~~~g----~~a~~~~~~~vs~~hv~~a~~k~~~ 357 (637)
T TIGR00602 297 KIKVPKKTSVELLC------QGCSGDIRSAINSLQFSSSKSG----SLPIKKRMSTKSDAHASKSKIKGKH 357 (637)
T ss_pred ccccCCHHHHHHHH------HhCCChHHHHHHHHHHHHhcCC----ccccccccccccHHHhhhccccCCC
Confidence 1 2344444 2578999999987776655431 0011112235666777777666654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=112.98 Aligned_cols=171 Identities=20% Similarity=0.367 Sum_probs=112.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
..++++||||+|+|||.|++++++.. +..+++++...+...++......-..-|..-+ .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 56889999999999999999998886 34678888887766554443333334455544 345999999999886
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEe
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVL 306 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~ 306 (702)
+... ...+...+..+.. .++-+|+.+-..|. .+.|.|++ ||. -++.+
T Consensus 190 k~~~---------qeefFh~FN~l~~-----------------~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I 241 (408)
T COG0593 190 KERT---------QEEFFHTFNALLE-----------------NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEI 241 (408)
T ss_pred ChhH---------HHHHHHHHHHHHh-----------------cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEee
Confidence 5322 2233343333322 23334444444455 45689999 886 45689
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCcccHHH-HHhhCCCCCHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFDLVK-IARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~~~~-la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+|+.+.|..|+........+....++.. ++.... -+.+++...+......
T Consensus 242 ~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~ 293 (408)
T COG0593 242 EPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAF 293 (408)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 99999999999999777766665555433 443333 3556666655554433
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=114.88 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=113.4
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------EEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN----------FIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~----------~~~i~~ 496 (702)
.|++|.|++.+++.+...+... +.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999888866432 456789999999999999999999976221 111111
Q ss_pred ccccccC-----cCc--------------------hHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 497 PELLNKY-----VGE--------------------SELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 497 ~~l~~~~-----~g~--------------------~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+|+.--+ -|. ....+|.+...+. .....|++||++|.+. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 2211000 010 1224566655543 3456899999999998 8
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
...|.||..|+... ++++|++|+.++.|-|.+.+ |+ ..+.|++++.++...++.....
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 89999999999765 33566778889999999988 98 5899999999999888887643
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-11 Score=127.01 Aligned_cols=128 Identities=25% Similarity=0.380 Sum_probs=82.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----Ce---------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV----PF--------- 186 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~--------- 186 (702)
.+.|.||+|++.+|+.+.-.. .-++|+||+||||||||++|+-+...+.. ..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 558999999999999998544 45688999999999999999998776521 00
Q ss_pred --------------------EEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 187 --------------------YKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 187 --------------------~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
...+...++.++.- .. .+-+..| ...|||+||+ .++.+.+++
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~---p~-PGeIsLA---H~GVLFLDEl-----------pef~~~iLe 301 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGV---PR-PGEISLA---HNGVLFLDEL-----------PEFKRSILE 301 (490)
T ss_pred cccccccCccceeCCccCCCccchHHHHhCCCCC---CC-CCceeee---cCCEEEeecc-----------chhhHHHHH
Confidence 11111122221100 00 0001112 2249999999 466678888
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR 286 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~ 286 (702)
.|...|+.....+... ......|.++++|++||+
T Consensus 302 ~LR~PLE~g~i~IsRa------~~~v~ypa~Fqlv~AmNp 335 (490)
T COG0606 302 ALREPLENGKIIISRA------GSKVTYPARFQLVAAMNP 335 (490)
T ss_pred HHhCccccCcEEEEEc------CCeeEEeeeeEEhhhcCC
Confidence 8988888654433222 222334677999999998
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=112.88 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=121.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
....++||||+|.|||+|++++++.. +..++.+...++...++.....+-..-|++-. .-.+|+||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45678999999999999999999876 34677888877766655432222223344333 447999999999996
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+. +...++...+.......+.+|+.+-..|. .+.+.+.+ ||. .++.+.+|+.+.|..|+.....
T Consensus 190 k~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 53 22333333333323334444443334454 45677877 886 5668889999999999999888
Q ss_pred cCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 612 KKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 612 ~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..++.-+.+ +..++.+- .=+-++|..++......+..... .||.+.+.++|.....
T Consensus 259 ~~~~~i~~ev~~~la~~~---~~nvReLegaL~~l~~~a~~~~~------------~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRL---DRNVRELEGALNRLDAFALFTKR------------AITIDLVKEILKDLLR 315 (408)
T ss_pred hcCCCCCHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhcCc------------cCcHHHHHHHHHHhhc
Confidence 777765444 45566321 22446666666655544443321 4666666666655543
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-10 Score=117.69 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=112.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..+++|+|.+.+++.|.+.+.. .+.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999988876543 1456679999999999999999999976211
Q ss_pred --------------------EEEEecc--cccccCcC-chHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCc
Q 045279 491 --------------------FIHIKGP--ELLNKYVG-ESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 491 --------------------~~~i~~~--~l~~~~~g-~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
++.+... +-.++... -....+|.+...+. ...+.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111100 00000000 02234566655432 3467899999999998
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
....|.||..++.. ..++++|++|+.++.+.+.+.+ |+ ..+.|++|+.++...++....
T Consensus 155 ---~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ---ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 88899999999854 3456777789999989888877 88 488999999999888887653
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=121.00 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=126.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc-
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL- 500 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~- 500 (702)
..+|++|+|-......+.+... .......++|++|.+||||..+|+++.+.. +.||+.+||+-+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~ak-----------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAK-----------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHH-----------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3468888887776554444322 233567889999999999999999999865 7899999997543
Q ss_pred --------cc----CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--------
Q 045279 501 --------NK----YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------- 560 (702)
Q Consensus 501 --------~~----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------- 560 (702)
+. |.|.....-..+|+.| ..+.||+|||..+. ..++..||+.|...
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCCC
Confidence 22 2333332234677777 55899999999998 88999999988752
Q ss_pred -CCCCcEEEEEecCCC--C-----ccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhccC----CCCC-CCCHHH
Q 045279 561 -DKRKGVFVIGATNRP--D-----VMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARKK----PIDD-SVDLHT 623 (702)
Q Consensus 561 -~~~~~~~vI~atn~~--~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~~----~~~~-~~~~~~ 623 (702)
...-+|-||+|||+. + .+...+-- |++ ++.+..|..++|. .+...++.+. +... ...-+.
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 223468999999974 2 22233322 554 5666666666554 3444455532 2111 111122
Q ss_pred HhhhhcCCCCCH--HHHHHHHHHHHH
Q 045279 624 IAQSKFCENLSG--ADLAAMMNEAAM 647 (702)
Q Consensus 624 la~~~~~~~~sg--~dl~~~~~~a~~ 647 (702)
++. -+...|.| ++|+|++.+++.
T Consensus 453 ~~~-L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 453 LAL-LLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHH-HHhCCCCchHHHHHHHHHHHHh
Confidence 221 12347777 999999998885
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=101.50 Aligned_cols=128 Identities=33% Similarity=0.472 Sum_probs=82.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhcc--------------cccccHHHHHHHHHHHHhhCCce
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVSG--------------VSGASEENIRDLFSKAYRTAPSI 220 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~~--------------~~g~~~~~~~~~f~~a~~~~p~i 220 (702)
+.+++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999765 888887764332 11233445667888887777789
Q ss_pred EEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CCCCCccccCCCC
Q 045279 221 VFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PDAVDPALRRPGR 299 (702)
Q Consensus 221 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~~ld~al~r~~R 299 (702)
+||||++.+.............. ........ ......+|+++|. ....+..+.+ |
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~~~~~~--~ 137 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE--LRLLLLLK--------------------SEKNLTVILTTNDEKDLGPALLRR--R 137 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh--hHHHHHHH--------------------hcCCCEEEEEeCCCccCchhhhhh--c
Confidence 99999988875443211100000 00001111 1233788899986 3445555555 7
Q ss_pred cceEEEeCCC
Q 045279 300 FDREIVLGVP 309 (702)
Q Consensus 300 f~~~i~~~~p 309 (702)
++..+.+..+
T Consensus 138 ~~~~~~~~~~ 147 (148)
T smart00382 138 FDRRIVLLLI 147 (148)
T ss_pred cceEEEecCC
Confidence 7777776544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=130.41 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=107.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-------------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------------------- 182 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------------------- 182 (702)
-|.+|+|++.++..+.-.+..+ ...+|||.|+||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998876444221 22579999999999999999999988
Q ss_pred ----------------CCCeEEEechhhhcccccccHH--HH--------HHHHHHHHhhCCceEEechhhHhhhcchhh
Q 045279 183 ----------------GVPFYKISATEVVSGVSGASEE--NI--------RDLFSKAYRTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 183 ----------------~~~~~~i~~~~l~~~~~g~~~~--~~--------~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 236 (702)
..+|+.+.++.......|...- .+ .+++..| ...|||||||+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~---- 141 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH---- 141 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH----
Confidence 2456665555433333333211 00 1222222 2349999999988744
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCC-HHHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPD-ENAR 314 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~-~~er 314 (702)
....|+..|+.-...+... +.....+.++++|+|+|+.+ .+.++|+. ||..++.++.+. .+++
T Consensus 142 -------~q~~Ll~~le~g~~~v~r~------g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~ 206 (633)
T TIGR02442 142 -------LVDVLLDAAAMGVNRVERE------GLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEER 206 (633)
T ss_pred -------HHHHHHHHHhcCCEEEEEC------CceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHH
Confidence 3445777776432111111 11122345699999999753 68899999 999888888775 5777
Q ss_pred HHHHHHh
Q 045279 315 VQILSVL 321 (702)
Q Consensus 315 ~~Il~~~ 321 (702)
.+++...
T Consensus 207 ~~il~~~ 213 (633)
T TIGR02442 207 VEIIRRR 213 (633)
T ss_pred HHHHHHH
Confidence 8887653
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-11 Score=116.12 Aligned_cols=142 Identities=21% Similarity=0.362 Sum_probs=68.0
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC----eEEE---E------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA----NFIH---I------ 494 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~---i------ 494 (702)
|.+|.|++.+|..+.-+.. | +.|+|++||||||||++|+.+...+.- ..++ +
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999987754321 2 368999999999999999999986511 0000 0
Q ss_pred -------ecccccccCcCchHHHHHHHHHH--------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 495 -------KGPELLNKYVGESELAVRTLFSR--------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 495 -------~~~~l~~~~~g~~~~~~~~~f~~--------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
...-+......-+. ..++.- .-....+|||+||+-.+. +.+++.|+.-|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHHC
Confidence 00000000000111 112210 111245899999999887 8999999998875
Q ss_pred CC-----------CCCcEEEEEecCC-----------------------CCccCccccCCCccceEEEcCCCCHH
Q 045279 560 AD-----------KRKGVFVIGATNR-----------------------PDVMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 560 ~~-----------~~~~~~vI~atn~-----------------------~~~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
.. -..++++|+|+|. ...+...++. |||..+.++..+.+
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 21 2246788999983 1245555555 88877777766554
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=127.09 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=85.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------------------KRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~~--~~ld~ 580 (702)
..++|||||++.+. ...+..|+..|.... -..++.||+++|.. ..+++
T Consensus 217 ngGtL~Ldei~~L~-----------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~ 285 (608)
T TIGR00764 217 HKGVLYIDEIKTMP-----------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP 285 (608)
T ss_pred CCCEEEEEChHhCC-----------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH
Confidence 34688888888877 667777777764321 12367889999874 57999
Q ss_pred cccCCCccc---eEEEcCC--C-CHHHHHHHHHHHhc---cCCCCCCCC---HHHHhhhh--cC---CC--CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPL--P-TPDERGLILEALAR---KKPIDDSVD---LHTIAQSK--FC---EN--LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~--p-~~~~r~~il~~~~~---~~~~~~~~~---~~~la~~~--~~---~~--~sg~dl~~~ 641 (702)
+|+. ||+ ..++|+. | +.+.+..+.+...+ +.+.....+ ++.+.+.. .. .. .+.++|.++
T Consensus 286 ~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~l 363 (608)
T TIGR00764 286 ALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGL 363 (608)
T ss_pred HHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 9998 998 6676653 3 45666666555433 221111222 23333110 00 11 345899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
|++|...|..+. ...|+.+|+++|++....
T Consensus 364 lR~A~~iA~~~~-----------~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 364 VRAAGDIAKSSG-----------KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHHhcC-----------CceecHHHHHHHHHHHHH
Confidence 999865443331 137999999999987754
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=117.06 Aligned_cols=173 Identities=19% Similarity=0.269 Sum_probs=106.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchH-------HHHHHHHHHHHhCCCeE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESE-------LAVRTLFSRARTCSPCI 525 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~-------~~~~~~f~~a~~~~~~v 525 (702)
....++||+|++||||+++|+++.... +.+|+.++|+.+.... .|... .....+|+.| ..++
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCE
Confidence 345679999999999999999998765 4799999998653211 11100 0011224433 5689
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG 589 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~ 589 (702)
||||||+.+. ..++..|+..++... ...++.||++||.. ..+.+.+.. |+.
T Consensus 97 L~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 97 LFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred EEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999999999 888888888886532 12457888888753 234555655 774
Q ss_pred -eEEEcCCCC--HHHHHHHHHHHhccC----CCCCCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 590 -KLLYVPLPT--PDERGLILEALARKK----PIDDSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 590 -~~i~~~~p~--~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
..|.+|+.. .++...++..++.+. +......+..-+...+ ...|.| ++|++++..|+..+
T Consensus 164 ~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 345555554 234455566655432 2111012222221122 236666 89999999888654
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-10 Score=119.96 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=96.0
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechh-hhccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATE-VVSGVSG 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~-l~~~~~g 200 (702)
+.|+|.+++++.+...+ ..+.+|||+||||||||++|++|+...+. +|..+.+.. ......|
T Consensus 20 ~~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 45789999988877544 35678999999999999999999997743 444443331 1222223
Q ss_pred cc-HHHH--HHHHHHHHhh---CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 201 AS-EENI--RDLFSKAYRT---APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 201 ~~-~~~~--~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. -... .+-|.....+ ...++|+|||+.+.+. ....|+..|++.... .++ .....
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-----------~QsaLLeam~Er~~t--~g~------~~~~l 145 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-----------ILNTLLTAINERRFR--NGA------HEEKI 145 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-----------HHHHHHHHHHhCeEe--cCC------eEEeC
Confidence 21 0000 1122211111 1239999999766543 445688888764421 111 11112
Q ss_pred CCeEEEEEecCCCC---CCCccccCCCCcceEEEeCCCC-HHHHHHHHHHh
Q 045279 275 PGYVLVIGATNRPD---AVDPALRRPGRFDREIVLGVPD-ENARVQILSVL 321 (702)
Q Consensus 275 ~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~ 321 (702)
+..++|+ |||+.. ...+++.. ||...+.+++|+ .++..+|+...
T Consensus 146 p~rfiv~-ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 146 PMRLLVT-ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcEEEE-ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 3334444 447532 23357888 998889999997 46667788653
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=118.77 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=129.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK- 502 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~- 502 (702)
.+..++|.....+.+.+.+... .....++|++|++||||..+|++|.... +.||+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567888888888777766543 2456789999999999999999999866 569999999765322
Q ss_pred ----CcC----chHHHH---HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------C
Q 045279 503 ----YVG----ESELAV---RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------K 562 (702)
Q Consensus 503 ----~~g----~~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~ 562 (702)
..| ...... ...|+.| ..+.||||||..+. .+++..||..+.... .
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 112 111111 2345555 66999999999999 899999999887521 2
Q ss_pred CCcEEEEEecCCC--C-----ccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhcc----CCCCCCCCHHHHhhh
Q 045279 563 RKGVFVIGATNRP--D-----VMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARK----KPIDDSVDLHTIAQS 627 (702)
Q Consensus 563 ~~~~~vI~atn~~--~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~----~~~~~~~~~~~la~~ 627 (702)
.-+|-||+|||+. + .+-+.+.- |+. ++.+..|...+|. -++.+++++ .+. ....+..-+..
T Consensus 274 ~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~-~~~~~s~~a~~ 349 (464)
T COG2204 274 KVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR-PPKGFSPEALA 349 (464)
T ss_pred ceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCC-CCCCCCHHHHH
Confidence 2368899999874 1 34444444 664 6667777766654 444555543 221 12222222222
Q ss_pred hc-CCCCCH--HHHHHHHHHHHHHHHH
Q 045279 628 KF-CENLSG--ADLAAMMNEAAMAALE 651 (702)
Q Consensus 628 ~~-~~~~sg--~dl~~~~~~a~~~a~~ 651 (702)
.+ ...|.| ++|+|+|..++..+-.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 32 347877 9999999999876543
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-10 Score=118.63 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=120.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
-+++++|.+...+++.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3778999999999998888442 3456789999999999999999997654 469999999986422
Q ss_pred ----ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ----VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ----~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
+.|.. .....+.|+.+. ..+||||||+.|....+ ..|+..++.... ...++.
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~-~~~g~~-- 135 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ-----------EKLLRVIEYGEL-ERVGGS-- 135 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC--
Confidence 11111 001123444443 34999999999885433 345665553211 011111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC--C
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE--G 329 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~--~ 329 (702)
...+.++.||++|+.. ..+.+.|.. || ..+.+..|+..+|.+ ++..++... ... .
T Consensus 136 -----~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 207 (326)
T PRK11608 136 -----QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFP 207 (326)
T ss_pred -----ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 1123358999998763 245566666 77 346677777777654 334443222 111 1
Q ss_pred ccc---HHHHHhh-CCCCCHHHHHHHHHHHHHH
Q 045279 330 SFD---LVKIARS-TPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~~~---~~~la~~-t~g~~~~dl~~l~~~a~~~ 358 (702)
... +..+... .+| +.++|++++..++..
T Consensus 208 ~~s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~ 239 (326)
T PRK11608 208 GFTERARETLLNYRWPG-NIRELKNVVERSVYR 239 (326)
T ss_pred CCCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 111 2233333 333 678888888777543
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=105.83 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=88.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechhhhcc---------cc--cccHHHHHHHHHHHHh--
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATEVVSG---------VS--GASEENIRDLFSKAYR-- 215 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~l~~~---------~~--g~~~~~~~~~f~~a~~-- 215 (702)
.+..+||+||+|+|||++|+.+++.+... ....+|..+..+ .. .-....++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999997432 000111111100 00 0112345555555432
Q ss_pred --hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc
Q 045279 216 --TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293 (702)
Q Consensus 216 --~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a 293 (702)
+...|++|||+|.+... ..+.|+..+++. +.+..+|.+|+.+..+.++
T Consensus 93 ~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~-------------------~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEA-----------AANALLKTLEEP-------------------PPNTLFILITPSPEKLLPT 142 (188)
T ss_pred ccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCC-------------------CCCeEEEEEECChHhChHH
Confidence 34569999999988643 234577777652 2346677777777899999
Q ss_pred ccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 294 LRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 294 l~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
+++ |+ ..+.|.+|+.++...++...
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 999 88 68999999999998888765
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=125.04 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=122.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
....+|++++|.+...+++.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 34568999999999888888777332 2345679999999999999999986554 468999999987
Q ss_pred hcc-----cccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 195 VSG-----VSGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 195 ~~~-----~~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
... ..|... ....++|+.|. ..+||||||+.|....+ ..|+..++... +...|
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g 331 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGT-FRRVG 331 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH-----------HHHHHHHhcCC-cccCC
Confidence 532 111110 11134566553 34999999999875443 34555554311 11111
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhc----Cccc
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTR----NLRV 327 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~----~~~~ 327 (702)
+. ...+.+++||++|+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++. +...
T Consensus 332 ~~-------~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~ 401 (520)
T PRK10820 332 ED-------HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGV 401 (520)
T ss_pred CC-------cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCC
Confidence 11 11234589999887632 24455555 66 447788888877763 2233332 2221
Q ss_pred C---Ccc-cHHHHHhh-CCCCCHHHHHHHHHHHHHH
Q 045279 328 E---GSF-DLVKIARS-TPGFVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~---~~~-~~~~la~~-t~g~~~~dl~~l~~~a~~~ 358 (702)
. -.. .+..+... ++| +.++|++++.+|+..
T Consensus 402 ~~~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~ 436 (520)
T PRK10820 402 PRPKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHh
Confidence 1 111 12333333 333 678888888777653
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=114.72 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=105.1
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------------------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------------------- 183 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------------------- 183 (702)
++++|.+.+...+...+...- +-++.+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 357788888888877663211 2223599999999999999999999986
Q ss_pred ----CCeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 184 ----VPFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 184 ----~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..++.+++++..... -....++.+-+.... +...|++|||+|.|..+ ..+.++..+++
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~lEe- 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTLEE- 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHhcc-
Confidence 467777777653321 123344444443322 23569999999998863 34457777775
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
.+.+..+|.+||.+..+-|.+++ |+ ..+.|.+|+.........
T Consensus 136 ------------------p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ------------------PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ------------------CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 35568999999999999999999 98 678888866555544443
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-10 Score=124.99 Aligned_cols=202 Identities=22% Similarity=0.239 Sum_probs=124.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
.+.+|+|....++++.+.+.. -.....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 578899999999999888843 23456789999999999999999997764 579999999987532
Q ss_pred ----ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ----VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ----~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
..|.. .....+.|+.+. +.+||||||+.|....+ ..|+..++... +...|+.
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~-- 316 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ-----------AKLLRVLQYGE-IQRVGSD-- 316 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH-----------HHHHHHHhcCC-EeeCCCC--
Confidence 11110 001123455553 34999999999885433 34666655321 1111111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc-------cC
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR-------VE 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~-------~~ 328 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++.... ..
T Consensus 317 -----~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 317 -----RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLR 388 (509)
T ss_pred -----cceecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11234589999998732 34444544 56 457788888877754 3333333221 11
Q ss_pred Cccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 GSFD-LVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
...+ +..|....=-.+.++|++++..|+..+
T Consensus 389 ~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 389 LSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 1111 333333322237889999998887654
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=114.09 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=98.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+|||++|+.+|..+.+ .++.+...+- ++ .-+-..+|.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 45667999999999999999999997743 1222222110 00 113456777766
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ....|++||++|.+. ....|.||..|+... .++++|++|+.++.+.|.+++ |+. .+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 5542 456799999999999 899999999999743 577888999999999999988 995 69
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++....+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999998887777654
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=125.80 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=124.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..+|++++|....++.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 357899999999999988777432 2345689999999999999999997754 57999999987643
Q ss_pred c-----ccc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 G-----VSG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~-----~~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
. ..| .... ..+.|+.+. +++||||||+.+....+ ..|+..++... +...++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~-~~g~le~a~---~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~-~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQ-RIGRFELAD---KSSLFLDEVGDMPLELQ-----------PKLLRVLQEQE-FERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccc-hhhHHHhcC---CCeEEEechhhCCHHHH-----------HHHHHHHHhCC-EEeCCC
Confidence 2 111 1111 234455543 35999999998875433 34666665421 111111
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~ 328 (702)
. ...+.++++|++|+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++.+. ...
T Consensus 505 ~-------~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~ 574 (686)
T PRK15429 505 N-------KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN 574 (686)
T ss_pred C-------CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC
Confidence 1 11234689999998742 22233333 55 457888888888765 334443322 111
Q ss_pred ---Cc-ccHHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 045279 329 ---GS-FDLVKIARS-TPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ---~~-~~~~~la~~-t~g~~~~dl~~l~~~a~~~a 359 (702)
.. ..+..+... ++| +.++|++++.+++..+
T Consensus 575 ~~~~s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 575 IDSIPAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred CCCcCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 11 113333333 344 7789999988887543
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=114.30 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=107.3
Q ss_pred CcccccC-HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEech
Q 045279 122 RFQDLGG-MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISAT 192 (702)
Q Consensus 122 ~~~~i~G-~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~~ 192 (702)
.|+.|+| ++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+.+.- ..-+|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 5889998 88899999877621 23456689999999999999999999874321 000011
Q ss_pred hhhcc---------cccc--cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 193 EVVSG---------VSGA--SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 193 ~l~~~---------~~g~--~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.+..+ ..|. .-..++.+.+.+. .+...|++|||+|.+... ..+.|+..+++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-----------a~NaLLK~LEE--- 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-----------AANSLLKFLEE--- 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------HHHHHHHHhcC---
Confidence 11100 0011 1234555555443 234469999999888643 34568888886
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.|+++++|.+|+.+..+.|.+++ |+ .++.|..|+.++..+++..
T Consensus 137 ----------------Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ----------------PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ----------------CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 35568888899899999999999 98 7799999999998777753
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=111.92 Aligned_cols=150 Identities=18% Similarity=0.295 Sum_probs=102.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC------------------------eEEEechhhhcccccccHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP------------------------FYKISATEVVSGVSGASEENIRDLFSK 212 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~ 212 (702)
.++.+||+||+|+|||++|+.+|+.+.+. ++.+....- ...-.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHHHH
Confidence 45679999999999999999999998542 122211100 001123456666555
Q ss_pred HHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC
Q 045279 213 AYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD 288 (702)
Q Consensus 213 a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~ 288 (702)
+.. +...|++||++|.|... ..+.|++.+++ .|+++++|.+|+.++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEE-------------------Pp~~~~fiL~t~~~~ 147 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEE-------------------PSGDTVLLLISHQPS 147 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhC-------------------CCCCeEEEEEECChh
Confidence 542 34569999999988753 34568888886 356789999999999
Q ss_pred CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 289 AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 289 ~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
.+.|.+++ |+ ..+.|++|+.++..+.+...... ........++....|-.+
T Consensus 148 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 148 RLLPTIKS--RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 99999999 99 66999999999988888654321 112233445556665433
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=118.18 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=90.7
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC----CeEEE---------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG----ANFIH--------- 493 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~----~~~~~--------- 493 (702)
.|.++.|+..+++.+.- ......+++|+||||||||++++.++..+. ..++.
T Consensus 190 d~~dv~Gq~~~~~al~~---------------aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI---------------AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhh---------------hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 56778888777654432 123456799999999999999999997541 11111
Q ss_pred ---------------EecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 494 ---------------IKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 494 ---------------i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
...+......+|......-..+..| ..++|||||++.+. ..++..|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 1111100001111100011123333 45899999999988 788888888886
Q ss_pred CCC-----------CCCcEEEEEecCCC------C-----------------ccCccccCCCccceEEEcCCCCHH
Q 045279 559 GAD-----------KRKGVFVIGATNRP------D-----------------VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 559 ~~~-----------~~~~~~vI~atn~~------~-----------------~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
... ...++.+|+++|.. + .+...++. |||..+.++.++.+
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 532 12468899999852 1 47777777 99999999987654
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-09 Score=114.26 Aligned_cols=206 Identities=21% Similarity=0.266 Sum_probs=137.5
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccccccc----------CcCchHH------HHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPELLNK----------YVGESEL------AVRTLFSRA 518 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~----------~~g~~~~------~~~~~f~~a 518 (702)
.+.+.|-||||||.++..+-+.+ .+.+++|++-.+.+. +.|+... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57888999999999999888755 568899998776553 2232111 122222211
Q ss_pred -HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc-CC-Cccc-eEEEc
Q 045279 519 -RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL-RP-GRFG-KLLYV 594 (702)
Q Consensus 519 -~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~-r~-gRf~-~~i~~ 594 (702)
....++||+|||+|.|..+. +.++..++..- .....+++||+..|.++....-+. ++ +|++ ..|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWp--t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWP--TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCC--cCCCCceEEEEecccccCHHHHhccchhhhccceeeec
Confidence 13468999999999999654 55555554322 235678899999998876655554 21 2655 67899
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCH--HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG--ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTH 672 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg--~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d 672 (702)
.+++-++..+|+...++.........++.+|++ ....|| +..-.+|++|+..|-.+.... .......|+..|
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvark--VAavSGDaRraldic~RA~Eia~~~~~~~----k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARK--VAAVSGDARRALDICRRAAEIAEERNVKG----KLAVSQLVGILH 647 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHH--HHhccccHHHHHHHHHHHHHHhhhhcccc----cccccceeehHH
Confidence 999999999999999988744433344444432 223343 444468889998888776521 222334799999
Q ss_pred HHHHHhhcCCCCCH
Q 045279 673 FEQALSKISPSVSE 686 (702)
Q Consensus 673 ~~~al~~~~~~~~~ 686 (702)
+.+|++.+..+.-.
T Consensus 648 v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 648 VMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHhhhhHH
Confidence 99999988654433
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=105.98 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=110.4
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCC-eEEE--E-ec----cccc----cc----CcCch-HHHHHHHH----HHHHhCCC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGA-NFIH--I-KG----PELL----NK----YVGES-ELAVRTLF----SRARTCSP 523 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~-~~~~--i-~~----~~l~----~~----~~g~~-~~~~~~~f----~~a~~~~~ 523 (702)
.++|+||+|+|||++++.++..+.. .+.. + +. .++. .. ..+.. ....+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998752 2221 1 11 1111 00 11111 11122222 22334567
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-C-CCCcEEEEEecCCCC---ccC-c---cccCCCccceEEEc
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-D-KRKGVFVIGATNRPD---VMD-R---AVLRPGRFGKLLYV 594 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-~-~~~~~~vI~atn~~~---~ld-~---a~~r~gRf~~~i~~ 594 (702)
.+|+|||++.+. ...+..+. .+-.. . ....+.|+++ ..++ .+. + .+.+ |+...+.+
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~-~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELR-MLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHH-HHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999886 33333322 22211 1 1222333333 3332 221 1 2334 78888999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCC-----CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccc
Q 045279 595 PLPTPDERGLILEALARKKPIDD-----SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIK 669 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~-----~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~ 669 (702)
++++.++...++...+...+... +..++.+. ..+.|+. +.|..+|..+...|..+.. ..|+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~--~~s~G~p-~~i~~l~~~~~~~a~~~~~-----------~~i~ 255 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIH--RFSRGIP-RLINILCDRLLLSAFLEEK-----------REIG 255 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHH--HHcCCcc-cHHHHHHHHHHHHHHHcCC-----------CCCC
Confidence 99999999999998887544321 23345555 4566665 4488888888877776543 2799
Q ss_pred HHHHHHHHhhcC
Q 045279 670 LTHFEQALSKIS 681 (702)
Q Consensus 670 ~~d~~~al~~~~ 681 (702)
.++++.++..+.
T Consensus 256 ~~~v~~~~~~~~ 267 (269)
T TIGR03015 256 GEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-10 Score=124.61 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=121.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..++++|+|.+..++++.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 458999999999999999887442 3456779999999999999999998775 57999999987643
Q ss_pred cc-----ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 197 GV-----SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 197 ~~-----~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
.. .|... ....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~-~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEF-ERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH-----------HHHHHHHhcCcE-EECCCC
Confidence 21 11100 0001223333 345999999999875433 346666654211 111111
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHH----HHHHHHhhcCcc------c
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENAR----VQILSVLTRNLR------V 327 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er----~~Il~~~~~~~~------~ 327 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+| ..++..++.... .
T Consensus 326 -------~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~ 395 (534)
T TIGR01817 326 -------RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL 395 (534)
T ss_pred -------ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 01123588999987631 23344444 55 3456666666554 334455544321 1
Q ss_pred CCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 328 EGSF-DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 328 ~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
.... .+..+....=-.+.++|++++..++..+
T Consensus 396 ~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 396 TITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 1111 1333444332237789998888876543
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=113.69 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=119.3
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-- 502 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-- 502 (702)
+++++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3556777666665555444431 345679999999999999999998765 469999999876321
Q ss_pred ---CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CC
Q 045279 503 ---YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KR 563 (702)
Q Consensus 503 ---~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~ 563 (702)
+.|... ......|..| ..++|||||++.+. ..++..|+..++... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 111110 0011233333 56899999999999 788888888876522 11
Q ss_pred CcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccC----CCC--CCCCHHHHhhh
Q 045279 564 KGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKK----PID--DSVDLHTIAQS 627 (702)
Q Consensus 564 ~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~----~~~--~~~~~~~la~~ 627 (702)
.++.||++|+.. ..+.+.+.. ||. ..|.+|+... ++...++..++.+. +.. ....-+.+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~- 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET- 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-
Confidence 357888888763 245566666 773 4566666553 34555666665432 111 1122222221
Q ss_pred hcCCCCCH--HHHHHHHHHHHHH
Q 045279 628 KFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 628 ~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
-....|.| ++|+++++.|+..
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 11236766 8999999998864
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=127.25 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=121.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..+|++|+|.+...+++.+.+.. ......+|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~-----------~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ-----------AAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH-----------HhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 45799999999999988877743 23455679999999999999999998765 47999999987743
Q ss_pred c-----ccccc----HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 197 G-----VSGAS----EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 197 ~-----~~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
. ..|.. .....+.|+.| .+.+||||||+.|....+ ..|+..++.... ...++.
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~-~~~~~~--- 451 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVI-TRLDSR--- 451 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC---
Confidence 2 22211 11111234444 345999999998885443 346666653211 111111
Q ss_pred CCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----c--cCCc
Q 045279 268 SDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----R--VEGS 330 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~--~~~~ 330 (702)
...+-++.+|+||+..- .+.+.|.- |+ ..+.+..|+..+|.+ ++..++..+ . ..-.
T Consensus 452 ----~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 452 ----RLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKID 524 (638)
T ss_pred ----ceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 11123589999998731 23333433 55 457888888888753 333333322 1 1111
Q ss_pred c-cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 331 F-DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~-~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
. .+..|....=-.+.++|.+++..++.
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 1 13334333322367888888887654
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=112.35 Aligned_cols=169 Identities=25% Similarity=0.377 Sum_probs=114.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec--------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA-------- 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~-------- 191 (702)
.+.|.-++|++..|..|....+. +.-.++|+-|+.||||||++|+|+..|.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45789999999999887644322 233689999999999999999999988422111111
Q ss_pred -----hh-------------------hhcccccccHHHHH------------------HHHHHHHhhCCceEEechhhHh
Q 045279 192 -----TE-------------------VVSGVSGASEENIR------------------DLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 192 -----~~-------------------l~~~~~g~~~~~~~------------------~~f~~a~~~~p~il~iDEid~l 229 (702)
.. ++..-.|.++.++- +++..|. ..||++||++.|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc
Confidence 00 11111233333211 1222332 249999999777
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCC
Q 045279 230 ASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~ 308 (702)
. ..+++.||..+.+-.+.+ ...+++..+|-++++|||+|+.+ +|-|.|+. ||...+.+..
T Consensus 157 ~-----------d~lvd~LLd~aaeG~n~v------ereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~ 217 (423)
T COG1239 157 D-----------DHLVDALLDVAAEGVNDV------EREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHY 217 (423)
T ss_pred c-----------HHHHHHHHHHHHhCCcee------eeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccC
Confidence 5 356677888777532222 23345666788899999999965 89999999 9999998887
Q ss_pred C-CHHHHHHHHHHhhc
Q 045279 309 P-DENARVQILSVLTR 323 (702)
Q Consensus 309 p-~~~er~~Il~~~~~ 323 (702)
| +.++|.+|......
T Consensus 218 ~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 218 PLDLEERVEIIRRRLA 233 (423)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7 57899999876554
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=114.88 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=106.1
Q ss_pred cccccCC-cccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe---------------
Q 045279 427 KWEDVGG-LDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN--------------- 490 (702)
Q Consensus 427 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~--------------- 490 (702)
.|+.|.| ++.+++.+...+.. .+.+..+||+||+|+||+++|+.+|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3666766 77777777665422 2456678999999999999999999876321
Q ss_pred ---------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 491 ---------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 491 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
+..+... +.. -+-..++.+.+.+. .....|++|||+|.+. ....|.||..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHh
Confidence 2222111 000 12335566655443 2345799999999998 88999999999
Q ss_pred hCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH
Q 045279 558 DGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~ 608 (702)
+.. ..++++|++|+.+..+-|++.+ |+ ..++|++|+.++...+++.
T Consensus 135 EEP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EEP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 964 4566777788888899999988 88 5899999999887666653
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=120.24 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=121.4
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..++.++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 466788888877776666554432 345679999999999999999999875 579999999876332
Q ss_pred C-----cCchHH-------HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----C----
Q 045279 503 Y-----VGESEL-------AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----K---- 562 (702)
Q Consensus 503 ~-----~g~~~~-------~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~---- 562 (702)
. .|.... .....|..+ .+++|||||++.+. ..++..|+..++... +
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCce
Confidence 1 111000 000112222 56899999999999 788888888886522 1
Q ss_pred -CCcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCC--HHHHHHHHHHHhccCC--CCCCCCHHHHhhhhc
Q 045279 563 -RKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPT--PDERGLILEALARKKP--IDDSVDLHTIAQSKF 629 (702)
Q Consensus 563 -~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~ 629 (702)
..++.+|++|+.. ..+.+.+.. |+. ..|.+|+.. .++...|++.++.+.. ......+..-+...+
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247788888753 133344444 553 356666665 3455566777665422 111122222222122
Q ss_pred C-CCCCH--HHHHHHHHHHHHH
Q 045279 630 C-ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 630 ~-~~~sg--~dl~~~~~~a~~~ 648 (702)
. ..|.| ++|+++++.|+..
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHh
Confidence 2 35666 8999999988754
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=107.69 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=51.3
Q ss_pred CCCcc-cccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEEe
Q 045279 120 GPRFQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGV-------PFYKIS 190 (702)
Q Consensus 120 ~~~~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~-------~~~~i~ 190 (702)
..-|+ ++.|+++++.++.+.+..... |. .....++|+|||||||||+|++|++.++. +++.+.
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 34577 999999999999988865442 21 23466899999999999999999999965 777776
Q ss_pred c
Q 045279 191 A 191 (702)
Q Consensus 191 ~ 191 (702)
.
T Consensus 118 ~ 118 (361)
T smart00763 118 W 118 (361)
T ss_pred e
Confidence 6
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=122.48 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=114.8
Q ss_pred CCceEEEEC--CCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhh------CCceEEe
Q 045279 157 PMAGILLYG--PPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRT------APSIVFI 223 (702)
Q Consensus 157 ~~~~vLl~G--ppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~------~p~il~i 223 (702)
|+-+-+..| |++.||||+|++||+.+ +.+++.+|+++... -..++.++..+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456678 99999999999999998 56799999997421 23455555443322 2359999
Q ss_pred chhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceE
Q 045279 224 DEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDRE 303 (702)
Q Consensus 224 DEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~ 303 (702)
||+|.|.... .+.|+..|+.. ++++.+|++||.+..+.+++++ |+ ..
T Consensus 637 DEaD~Lt~~A-----------QnALLk~lEep-------------------~~~~~FILi~N~~~kIi~tIrS--RC-~~ 683 (846)
T PRK04132 637 DEADALTQDA-----------QQALRRTMEMF-------------------SSNVRFILSCNYSSKIIEPIQS--RC-AI 683 (846)
T ss_pred ECcccCCHHH-----------HHHHHHHhhCC-------------------CCCeEEEEEeCChhhCchHHhh--hc-eE
Confidence 9999997533 34588888852 4568999999999999999999 98 77
Q ss_pred EEeCCCCHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCCCCHHHHHHHHH
Q 045279 304 IVLGVPDENARVQILSVLTRNLRVEG-SFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 304 i~~~~p~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.|..|+.++....+...+.+..+.. ...+..++..+.| +.+...++++
T Consensus 684 i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq 733 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 733 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99999999999999988887655432 3346677777776 3344334443
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=119.66 Aligned_cols=196 Identities=18% Similarity=0.206 Sum_probs=120.6
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..|+++.|.....+.+.+.+... .....++|++|++||||+++|+++.... +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45778888887766666655432 1345689999999999999999998764 679999999876432
Q ss_pred -----CcCchH--------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 503 -----YVGESE--------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 503 -----~~g~~~--------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
..|..+ .....+|+.| ..+.|||||++.+. ..++..|+..++...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 111100 0112345544 45899999999999 788888888886521
Q ss_pred -CCCcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccCCCCCCCCHHHHhhhh--
Q 045279 562 -KRKGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKKPIDDSVDLHTIAQSK-- 628 (702)
Q Consensus 562 -~~~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~~~~~~~~la~~~-- 628 (702)
...++-||++||..- .+.+.+.. |+. ..|.+|+... ++...++..++.+........+..-+...
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 112457888887642 22333333 553 4555555543 34555666666653211111111111111
Q ss_pred -----c-CCCCCH--HHHHHHHHHHHHH
Q 045279 629 -----F-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 629 -----~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
+ ...|.| ++|++++.+++..
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1 236766 8999999988764
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=101.32 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=105.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~ 542 (702)
...++|+||+|+|||+|+++++...+..+ ++..++.. .++.... ..+|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAA---EGPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhh---cCeEEEECCCCCCCC-----
Confidence 34489999999999999999998765543 33222211 1222221 158999999976311
Q ss_pred chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 045279 543 GWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKPIDD 617 (702)
Q Consensus 543 ~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~ 617 (702)
.+.+-.++..+. .....+||+++..|. ...+.+.+ ||. .++.+..|+.++|..|++..+....+.-
T Consensus 103 ----~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ----ETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred ----HHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 222333333332 234455665554443 34677777 885 7899999999999999999998766543
Q ss_pred C-CCHHHHhhhhcCCCCCHHHHHHHHH---HHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 618 S-VDLHTIAQSKFCENLSGADLAAMMN---EAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 618 ~-~~~~~la~~~~~~~~sg~dl~~~~~---~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+ ..++.|+.+ ..++++.+.. .....+.... ..||...+.+++..+
T Consensus 174 ~~ev~~~La~~------~~r~~~~l~~~l~~L~~~~~~~~------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSR------MERSLFAAQTIVDRLDRLALERK------------SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHhh
Confidence 3 335666632 3356665554 3322222221 268889999888765
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=114.29 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=123.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~ 501 (702)
......|+|.......+.+.|... ......+|+.|.+||||..+|++|.... ..||+.+||+-+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 345667888887777666655443 2456789999999999999999999876 67999999976543
Q ss_pred c---------CcCchHHHH---HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 502 K---------YVGESELAV---RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 502 ~---------~~g~~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
. --|.....+ +.-|+.| ..+.||+|||..+. ..++..||..+....
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElA---dGGTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeec---CCCeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCc
Confidence 2 112111111 2234444 56899999999998 788888988776421
Q ss_pred -CCCcEEEEEecCCC-------CccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhccCCCCC---CCCHHHHhh
Q 045279 562 -KRKGVFVIGATNRP-------DVMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARKKPIDD---SVDLHTIAQ 626 (702)
Q Consensus 562 -~~~~~~vI~atn~~-------~~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~~~~~~---~~~~~~la~ 626 (702)
..-.|-||+|||+- -.+...+.- |+. ++.+..|...||. -+..+++++..... ...+..-|.
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhh--ccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 12358899999973 122333333 443 4445556555553 33344444322111 122222222
Q ss_pred hhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
..+ .-.|.| ++|.+++++|+..|
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 122 236777 99999999999877
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=120.04 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=118.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHH-----------hCCeEEEEe
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE-----------AGANFIHIK 495 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~-----------~~~~~~~i~ 495 (702)
.|+++.|.....+.+.+.+.... ....++|++|++||||+++|+++... .+.||+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46778888877776666554321 34567999999999999999999887 367999999
Q ss_pred ccccccc-----CcCchH--------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-
Q 045279 496 GPELLNK-----YVGESE--------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD- 561 (702)
Q Consensus 496 ~~~l~~~-----~~g~~~--------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~- 561 (702)
|+.+... ..|..+ ..-..+|+.| ..+.||||||+.+. ..++..|+..++...
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 9876432 112110 0112355555 45899999999999 888889998886521
Q ss_pred --------CCCcEEEEEecCCCC--c-----cCccccCCCccceEEEcCCCCHHH----HHHHHHHHhcc----CCCCCC
Q 045279 562 --------KRKGVFVIGATNRPD--V-----MDRAVLRPGRFGKLLYVPLPTPDE----RGLILEALARK----KPIDDS 618 (702)
Q Consensus 562 --------~~~~~~vI~atn~~~--~-----ld~a~~r~gRf~~~i~~~~p~~~~----r~~il~~~~~~----~~~~~~ 618 (702)
...++-||++||..- . +.+.+.. |+. .+.+..|...+ ...++..++++ ....
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 123467888887641 1 2223332 442 33444444444 44556666654 2221
Q ss_pred CCHHHH-----h-hhhcCCCCCH--HHHHHHHHHHHHH
Q 045279 619 VDLHTI-----A-QSKFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 619 ~~~~~l-----a-~~~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
..-+.+ + ..-....|.| ++|++++.+++..
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111 0 0011236666 9999999998864
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=116.52 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=83.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEe-----cccccccCcCchHHHH--HHHHHHHHhC---CCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIK-----GPELLNKYVGESELAV--RTLFSRARTC---SPCILFF 528 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~-----~~~l~~~~~g~~~~~~--~~~f~~a~~~---~~~vl~i 528 (702)
-...++||+||||||||++|++++...+. +|..+. .+++++.. +-... ..-|.+.... ...+||+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfL 113 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFL 113 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEee
Confidence 35678999999999999999999997643 333332 22333321 00000 1122222111 2249999
Q ss_pred eCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------CCCcEEEEEecCCCC---ccCccccCCCccceEEEcCCC
Q 045279 529 DEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------KRKGVFVIGATNRPD---VMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~atn~~~---~ld~a~~r~gRf~~~i~~~~p 597 (702)
|||..+. ...++.||..|..-. .-...++++|||... ...+++.. ||-..+.+|+|
T Consensus 114 DEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 114 DEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred cccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 9999887 889999999995321 112246666777532 24457877 99888999999
Q ss_pred C-HHHHHHHHHHH
Q 045279 598 T-PDERGLILEAL 609 (702)
Q Consensus 598 ~-~~~r~~il~~~ 609 (702)
+ .++-.+|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 7 45556777653
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=125.71 Aligned_cols=195 Identities=18% Similarity=0.257 Sum_probs=114.7
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc-
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN- 501 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~- 501 (702)
..|+++.|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|+.+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 357778887766555544443321 345569999999999999999999865 47999999976532
Q ss_pred ----cCcCch----HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----C-----CC
Q 045279 502 ----KYVGES----ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----K-----RK 564 (702)
Q Consensus 502 ----~~~g~~----~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~-----~~ 564 (702)
...|.. .......|+.| .+++||||||+.+. ..++..|+..++... + ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 122211 10011123333 56899999999999 788888888886432 1 12
Q ss_pred cEEEEEecCCCC-------ccCccccCCCccceEEEcCCCCHHHH----HHHHHHHhccCC--CCCCCCHHHHhhhhc-C
Q 045279 565 GVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPTPDER----GLILEALARKKP--IDDSVDLHTIAQSKF-C 630 (702)
Q Consensus 565 ~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~~~~r----~~il~~~~~~~~--~~~~~~~~~la~~~~-~ 630 (702)
++.||+|||..- .+.+.+.. |+. .+.+..|...+| ..++..++.+.. ......+..-+...+ .
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 577888888641 22233322 342 344444444444 455566555421 111112222221122 2
Q ss_pred CCCCH--HHHHHHHHHHHHH
Q 045279 631 ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 631 ~~~sg--~dl~~~~~~a~~~ 648 (702)
..|.| ++|+++++.|+..
T Consensus 534 y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 35555 8999999987753
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=114.91 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=114.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE-Eechh---hh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK-ISATE---VV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-i~~~~---l~ 195 (702)
+.++++|+|.++.++.|..++.... ++..+.+.++|+|||||||||+++.+|+.++..++. ++... ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 3489999999999999887764321 123445669999999999999999999998765433 22110 00
Q ss_pred ----------cc--cccccHHHHHHHHHHHHh----------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH-HH
Q 045279 196 ----------SG--VSGASEENIRDLFSKAYR----------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT-CM 252 (702)
Q Consensus 196 ----------~~--~~g~~~~~~~~~f~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~-~l 252 (702)
.. ........+..++..+.. ....||||||++.+..... ..+..++. ..
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~~~ 223 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRWKY 223 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHHHh
Confidence 00 011122344555555542 2456999999987764311 12233333 21
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CC--------------CCCccccCCCCcceEEEeCCCCHHHHHHH
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PD--------------AVDPALRRPGRFDREIVLGVPDENARVQI 317 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~--------------~ld~al~r~~Rf~~~i~~~~p~~~er~~I 317 (702)
.+ .+.+.+|++++. +. .+.+++++..|. .+|.|.+.+.......
T Consensus 224 ~e--------------------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 224 VS--------------------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKF 282 (637)
T ss_pred hc--------------------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHH
Confidence 11 112334444432 11 133677653355 5799999999997777
Q ss_pred HHHhhcCcccC--------CcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 318 LSVLTRNLRVE--------GSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 318 l~~~~~~~~~~--------~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|..++...... ....+..++.... +|++..+.....
T Consensus 283 L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf 326 (637)
T TIGR00602 283 LNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQF 326 (637)
T ss_pred HHHHHHhhhhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHH
Confidence 77766543211 1123555665444 477776655433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-09 Score=115.92 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=119.8
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-- 502 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-- 502 (702)
..+++|.....+.+.+.+... ...+.++||+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 456777777666666555442 1346689999999999999999999875 579999999876432
Q ss_pred ---CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CC
Q 045279 503 ---YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KR 563 (702)
Q Consensus 503 ---~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~ 563 (702)
..|... ......|+.| .+++||||||+.+. ..++..|+..++... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 111100 0001134443 56899999999999 788888888876422 12
Q ss_pred CcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccCCCC---CCCCHHHHhhhhc-
Q 045279 564 KGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKKPID---DSVDLHTIAQSKF- 629 (702)
Q Consensus 564 ~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~---~~~~~~~la~~~~- 629 (702)
.++-||++||..- .+.+.+.. |+. ..|.+|+... ++...++++++.+.... ....+..-+...+
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 3578888988641 34444444 553 2345554443 23445555555542110 1122222221122
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHH
Q 045279 630 CENLSG--ADLAAMMNEAAMAALE 651 (702)
Q Consensus 630 ~~~~sg--~dl~~~~~~a~~~a~~ 651 (702)
...|.| ++|++++..|+..+..
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCC
Confidence 236666 9999999999876543
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-09 Score=99.75 Aligned_cols=118 Identities=25% Similarity=0.311 Sum_probs=81.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-----------------------eEEEEecccccccCcCchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-----------------------NFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-----------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
+.+..+||+||+|+||+++|+.+|..+-. .+..++...... .-....++.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 45667899999999999999999987621 233333322100 1234566666665
Q ss_pred HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEE
Q 045279 518 AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593 (702)
Q Consensus 518 a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~ 593 (702)
+. .....|++||++|.+. .+..|.||..|+.. ..++++|++|+.++.+-|.+++ |+ ..+.
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEep--p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~ 157 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEP--PENTYFILITNNPSKILPTIRS--RC-QVIR 157 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST--TTTEEEEEEES-GGGS-HHHHT--TS-EEEE
T ss_pred HHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCC--CCCEEEEEEECChHHChHHHHh--hc-eEEe
Confidence 43 2456799999999999 89999999999965 4678888899999999999998 88 4666
Q ss_pred cCCC
Q 045279 594 VPLP 597 (702)
Q Consensus 594 ~~~p 597 (702)
|++.
T Consensus 158 ~~~l 161 (162)
T PF13177_consen 158 FRPL 161 (162)
T ss_dssp E---
T ss_pred cCCC
Confidence 6654
|
... |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=121.28 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=105.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE----echhhhcc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----SATEVVSG- 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----~~~~l~~~- 197 (702)
.-+|.|++.+|..+.-.+..-. .+.......++...||||+|+||||||++|+++++......+.. ++..+...
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 3568999998877764432211 01111112234456899999999999999999999876433221 22222211
Q ss_pred ----cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 ----VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
..|+..-. .+.+..| ...+++|||++.+.... ...|+..|+.-...+... +....
T Consensus 281 ~~~~~~g~~~~~-~G~l~~A---~~Gil~iDEi~~l~~~~-----------q~~L~e~me~~~i~i~k~------G~~~~ 339 (509)
T smart00350 281 TRDPETREFTLE-GGALVLA---DNGVCCIDEFDKMDDSD-----------RTAIHEAMEQQTISIAKA------GITTT 339 (509)
T ss_pred eEccCcceEEec-CccEEec---CCCEEEEechhhCCHHH-----------HHHHHHHHhcCEEEEEeC------CEEEE
Confidence 11111100 1112222 23499999999887443 234666666432111111 11112
Q ss_pred CCCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhhcC
Q 045279 274 KPGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 274 ~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~~~ 324 (702)
.+.++.||||+|+.+ .+++++++ ||+-.+ ..+.|+.+...+|+.+.+..
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 344589999999863 58999999 998755 55789999999999876643
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=113.07 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=27.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+-|+|+.|+|||||.+.|++..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356788999999999999999999999876
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=103.65 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=124.8
Q ss_pred CCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccc--
Q 045279 432 GGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELL-- 500 (702)
Q Consensus 432 ~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~-- 500 (702)
+|....++.+.. +...+.+|. .....++|++|++|.|||++++.++..- ..|++.+.++.--
T Consensus 37 IgY~~A~~~L~~-L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKEALDR-LEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHHHHHH-HHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 455555554433 333333332 2334679999999999999999998744 3467777654221
Q ss_pred ------------ccCc-Cc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcE
Q 045279 501 ------------NKYV-GE-SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV 566 (702)
Q Consensus 501 ------------~~~~-g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 566 (702)
..|. .. ......++....+.....+|+|||++.+.... .+-+.++++.+....+.-++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhccCC
Confidence 1121 11 11222333444566788999999999976332 11222333333322333333
Q ss_pred EEEEecCC----CCccCccccCCCccceEEEcCCCCH-HHHHHHHHHHhccCCCCCCCC--HHHHhhh--hcCCCCCHHH
Q 045279 567 FVIGATNR----PDVMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALARKKPIDDSVD--LHTIAQS--KFCENLSGAD 637 (702)
Q Consensus 567 ~vI~atn~----~~~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~~--~~~la~~--~~~~~~sg~d 637 (702)
-+|++... .-.-|+.+.+ ||+ .+..|.... ++...++..+....++....+ -..++.. ..++|.. ++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HH
Confidence 34443321 2345777777 996 555666553 466778888777666654333 2344422 2344443 68
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHH
Q 045279 638 LAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQ 675 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~ 675 (702)
+.++++.|+..|++...+ .||.+++..
T Consensus 258 l~~ll~~aA~~AI~sG~E-----------~It~~~l~~ 284 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEE-----------RITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHhcCCc-----------eecHHHHhh
Confidence 999999999999988654 788887765
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-09 Score=108.55 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------------------EEEEeccccc---------------
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------------------FIHIKGPELL--------------- 500 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------------------~~~i~~~~l~--------------- 500 (702)
+.+.++||+||+|+||+++|+.+|..+.+. +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 667889999999999999999999877331 1122111000
Q ss_pred ---cc----C-cCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 501 ---NK----Y-VGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 501 ---~~----~-~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
++ + -.-+-..+|.+...+. .....|++||++|.+. ....|.||+.|+. ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0012345666665543 2345799999999999 8999999999995 5567888
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~ 608 (702)
|++|+.++.|.|.+++ |+ ..+.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8899999999999998 99 6899999999988877765
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-09 Score=116.55 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=94.2
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCchHHHHHHHHHH---------HHhCCCeEEEEeCc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGESELAVRTLFSR---------ARTCSPCILFFDEV 531 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------a~~~~~~vl~iDEi 531 (702)
-.|+||.|+||||||++|++++..+.. +|+.+.........+|.- .+...+.. ......++|||||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 457999999999999999999998753 688887543333333431 11110000 01124579999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC---ccCccccCCCccceEEEcC-C
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD---VMDRAVLRPGRFGKLLYVP-L 596 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~---~ld~a~~r~gRf~~~i~~~-~ 596 (702)
+.+. ..+++.|+..|+... ...++.||+|+|..+ .+.++++. ||+.++.+. +
T Consensus 94 ~rl~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLD-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hhCC-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 9999 888999999887432 124678898888765 68888888 999877666 4
Q ss_pred CCHHHHHHHHHHHh
Q 045279 597 PTPDERGLILEALA 610 (702)
Q Consensus 597 p~~~~r~~il~~~~ 610 (702)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 56778888888765
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=98.91 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-------------CCccCccccCCCc
Q 045279 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-------------PDVMDRAVLRPGR 587 (702)
Q Consensus 521 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-------------~~~ld~a~~r~gR 587 (702)
.-|+||||||++.|. -+-+..|-+.++..- --+||+|||+ |..+.+.++. |
T Consensus 295 lvPGVLFIDEVhMLD-----------iEcFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLD-----------IECFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred hcCcceEeeehhhhh-----------hHHHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 468999999999987 667777767776432 2377888885 4566777776 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 045279 588 FGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPF 666 (702)
Q Consensus 588 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 666 (702)
+ .+|..-+++.++.++|++...+...+.-+. .+..++. + -+..-||-+++-..-+.+-.... ...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~--~---gt~tsLRy~vqLl~p~~~~ak~~--------g~~ 424 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE--I---GTSTSLRYAVQLLTPASILAKTN--------GRK 424 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh--h---ccchhHHHHHHhcCHHHHHHHHc--------CCc
Confidence 7 467777888888899999988877765433 3444552 1 13345666555333222222111 112
Q ss_pred cccHHHHHHHHhhcC
Q 045279 667 TIKLTHFEQALSKIS 681 (702)
Q Consensus 667 ~i~~~d~~~al~~~~ 681 (702)
.|..+|++++-.-+-
T Consensus 425 ~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 425 EISVEDVEEVTELFL 439 (456)
T ss_pred eeecccHHHHHHHHH
Confidence 677788887765543
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-09 Score=117.06 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=99.5
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-EEEE---ecccccccCcC
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-FIHI---KGPELLNKYVG 505 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-~~~i---~~~~l~~~~~g 505 (702)
.|.|.+.+|..+.-.+..... +.......+....++||+|+||||||++|++++...... |+.. ++..+....+.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 467777777655332211100 000001112334579999999999999999999987533 2221 11112111000
Q ss_pred c---hHHHH-HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEE
Q 045279 506 E---SELAV-RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIG 570 (702)
Q Consensus 506 ~---~~~~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~ 570 (702)
. ++..+ ...+. ....++++|||++.+. ...+..|+..|+... -..++.||+
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 00000 00111 1256899999999998 677788887776532 125688999
Q ss_pred ecCCCC-------------ccCccccCCCccceEEEc-CCCCHHHHHHHHHHHhc
Q 045279 571 ATNRPD-------------VMDRAVLRPGRFGKLLYV-PLPTPDERGLILEALAR 611 (702)
Q Consensus 571 atn~~~-------------~ld~a~~r~gRf~~~i~~-~~p~~~~r~~il~~~~~ 611 (702)
|+|..+ .|++++++ |||.++.+ +.|+.+....|.++.+.
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999652 58899999 99986554 67888888888887553
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=114.33 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=116.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~ 501 (702)
...|+++.|.....+.+.+.+... .....+++|+|++||||+++|+++.... ..+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456788888777655554433322 1235569999999999999999987654 46999999987643
Q ss_pred c-----CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 502 K-----YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 502 ~-----~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
. ..|... .....+|+.| ..+.|||||++.+. ..++..|+..+....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCc
Confidence 1 111110 0112345544 45899999999998 778888888776421
Q ss_pred -CCCcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhcc----CCCCCCCCHHHHhh
Q 045279 562 -KRKGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARK----KPIDDSVDLHTIAQ 626 (702)
Q Consensus 562 -~~~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~~~~~~~la~ 626 (702)
...++.||++|+.+- .+.+.+.. |+. ..|.+|+... ++...++..++.+ .+.. ...+..-+.
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~-~~~ls~~a~ 411 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP-RPKLAADLN 411 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC-CCCcCHHHH
Confidence 123567888887641 24444544 654 3444444433 2333444455443 2221 112222222
Q ss_pred hhcC-CCCCH--HHHHHHHHHHHHH
Q 045279 627 SKFC-ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 627 ~~~~-~~~sg--~dl~~~~~~a~~~ 648 (702)
..+. ..|.| ++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 1222 35666 8999999888754
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=102.32 Aligned_cols=192 Identities=17% Similarity=0.165 Sum_probs=124.9
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe------EEEE
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------FIHI 494 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------~~~i 494 (702)
...+.....++++.+++...+.+.. +...-.+.|+|||||||||+...+.|..+-.+ +.+.
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 3344556677777777766666531 22233389999999999999999999987442 2334
Q ss_pred ecccccccCcCchHHHHHHHHHHHHh-------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEE
Q 045279 495 KGPELLNKYVGESELAVRTLFSRART-------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVF 567 (702)
Q Consensus 495 ~~~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 567 (702)
+.++-.+. ...+.....|+.++. ..+..+++||+|+.. ...+|.|-+..+.+..+.++.
T Consensus 100 naSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 100 NASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------RDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred hccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------HHHHHHHHHHHHHhccceEEE
Confidence 44443221 122233355655552 377899999999999 889999988877665544444
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..+|.+..+-|++.. ||. .+.|.+.+...-...+.............+ ...++ ..+-+|++.+++...
T Consensus 166 --ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~------r~s~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 166 --TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALG------RLSVGDMRVALNYLQ 234 (360)
T ss_pred --EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHH------HHhHHHHHHHHHHHH
Confidence 558999999999988 885 666777777666677777766554433222 12222 235577777776554
Q ss_pred HHHH
Q 045279 647 MAAL 650 (702)
Q Consensus 647 ~~a~ 650 (702)
..+.
T Consensus 235 s~~~ 238 (360)
T KOG0990|consen 235 SILK 238 (360)
T ss_pred HHHH
Confidence 4333
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=96.79 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
|++.+++.|...+.. -+-+..+||+||+|+||+++|.++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888877622 2445679999999999999999999987321
Q ss_pred -eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 186 -FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 186 -~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
++.++...-.. .-....++.+...+. .+...|++||++|.|... ..+.||..|++.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-----------a~NaLLK~LEep----- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-----------AQNALLKTLEEP----- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-----------HHHHHHHHHHST-----
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-----------HHHHHHHHhcCC-----
Confidence 22222211100 112345555555543 224569999999988754 345699999973
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCC
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p 309 (702)
+.++++|.+|+.++.|-|.+++ |+ ..+.|+..
T Consensus 130 --------------p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 --------------PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp --------------TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred --------------CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 5679999999999999999999 98 66777654
|
... |
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=95.80 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-----CcCch-------HHHHHHHHHHHHhCCCeE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-----YVGES-------ELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-----~~g~~-------~~~~~~~f~~a~~~~~~v 525 (702)
..+.++||+|++||||+.+|+++.+.. +.||+.++|+.+... ..|.. ......+|+.| ..++
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~Gt 96 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGT 96 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSE
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceE
Confidence 345789999999999999999999865 579999999876422 11110 01112456666 5589
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCC
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNR 574 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~ 574 (702)
||||||+.|. ..++..|+..|+... ..-++.||++|+.
T Consensus 97 L~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 97 LFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred EeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9999999999 888999999887421 1236889999986
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=97.64 Aligned_cols=153 Identities=20% Similarity=0.329 Sum_probs=112.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-CC--e--------------------------EEEEecccccccCcCc-hHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-GA--N--------------------------FIHIKGPELLNKYVGE-SELAVRT 513 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-~~--~--------------------------~~~i~~~~l~~~~~g~-~~~~~~~ 513 (702)
.|+++|||+|+||-|.+.++-+++ |. . .+++++|+ .|. ..--++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 589999999999999999998876 21 1 12233333 232 2223445
Q ss_pred HHHHHH---------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccC
Q 045279 514 LFSRAR---------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584 (702)
Q Consensus 514 ~f~~a~---------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r 584 (702)
+++..- .....|++|-|+|.|. .+.+..|-+.|+.+.+.. -+|+.+|....+-+++.+
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~dAQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELT-----------RDAQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS 176 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhh-----------HHHHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh
Confidence 554432 2356799999999999 899999999999876654 455568988889998977
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCH-HHHhhhhcCCCCCHHHHHHHHH
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDL-HTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~~~~~~sg~dl~~~~~ 643 (702)
|+ ..|.+|.|+.++...++...+++.++..+.++ ..+|++ |++++|..+-
T Consensus 177 --RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k------S~~nLRrAll 227 (351)
T KOG2035|consen 177 --RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK------SNRNLRRALL 227 (351)
T ss_pred --he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH------hcccHHHHHH
Confidence 87 58999999999999999999999888766443 445532 7789987654
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-08 Score=115.29 Aligned_cols=195 Identities=22% Similarity=0.282 Sum_probs=118.4
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..|.++.|.....+.+.+.+.... ....+++++|++|||||++|+++.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 356778888877776665554321 345679999999999999999998865 579999999865321
Q ss_pred -----CcCch-------HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------
Q 045279 503 -----YVGES-------ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------- 561 (702)
Q Consensus 503 -----~~g~~-------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------- 561 (702)
..|.. .......|+.| .+++|||||++.+. ..++..|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11210 01112334444 56899999999998 788888888886521
Q ss_pred CCCcEEEEEecCCCC-------ccCccccCCCccceEEEcCCCCHHHH----HHHHHHHhccC----CCCC-CCCHHHHh
Q 045279 562 KRKGVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPTPDER----GLILEALARKK----PIDD-SVDLHTIA 625 (702)
Q Consensus 562 ~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~~~~r----~~il~~~~~~~----~~~~-~~~~~~la 625 (702)
...++.||++|+..- .+.+.+.. |+. .+.+..|...+| ..+++.++.+. +... ...-+.+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124578888887641 22333333 443 334444544444 34556555432 2111 11112221
Q ss_pred hhhcCCCCCH--HHHHHHHHHHHHHH
Q 045279 626 QSKFCENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 626 ~~~~~~~~sg--~dl~~~~~~a~~~a 649 (702)
. -....|.| ++|+++++.|+..+
T Consensus 585 ~-L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 T-LSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred H-HHhCCCCCcHHHHHHHHHHHHHhC
Confidence 1 11236766 99999999998643
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-10 Score=97.25 Aligned_cols=108 Identities=31% Similarity=0.379 Sum_probs=60.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc-ccc-----ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP-ELL-----NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTK 537 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~-~l~-----~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~ 537 (702)
|+||.|+||+|||++|+++|..++..|.+|.+. ++. +..+..... .-|.-.+. .-..|+|+|||....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrap-- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAP-- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCC--
Confidence 589999999999999999999999999988764 332 211111000 00000000 012599999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC-----ccCccccCCCcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD-----VMDRAVLRPGRF 588 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~-----~ld~a~~r~gRf 588 (702)
.++++.||..|... .-....+||+|-|..+ .+..+++. ||
T Consensus 76 ---------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ---------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 78888999887652 2234578888889765 56677766 76
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=105.00 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|+.+|..+-+ .|..+...+ ++. -+...+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 45678899999999999999999987632 122222110 111 13445666655
Q ss_pred HHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+. .....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 543 3455799999999999 8999999999996 45677888899999999999988 99 488
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++..+.+...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999998877776653
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-09 Score=114.89 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=97.9
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--EEEechhhhc---
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--YKISATEVVS--- 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--~~i~~~~l~~--- 196 (702)
.|.++.|...+++.+.- .+..+.+++|+||||||||++++.++..+...- ..+..+.+.+
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 78889998887776542 345678999999999999999999988763110 1111111110
Q ss_pred -----------------------ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 197 -----------------------GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 197 -----------------------~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...|.....-.+.+..|.++ +|||||++.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC-----------HHHHHHHHHHHH
Confidence 01121111113456666444 99999997654 345566777776
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---------------------CCCccccCCCCcceEEEeCCCCHH
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---------------------AVDPALRRPGRFDREIVLGVPDEN 312 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---------------------~ld~al~r~~Rf~~~i~~~~p~~~ 312 (702)
+-...+... ......+-++++|+|+|+.. .++.+++. ||+-.+.++.|+.+
T Consensus 320 ~g~v~I~r~------g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRT------RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecC------CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 543222211 11222356699999999853 36778888 99999999999876
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-09 Score=108.34 Aligned_cols=148 Identities=15% Similarity=0.250 Sum_probs=86.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhcccccccHHHHHHHHHHHH-----------hhCCceE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVSGVSGASEENIRDLFSKAY-----------RTAPSIV 221 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~~p~il 221 (702)
..+.++||+||+|||||++++.+-..+... ...++++... +...+..+++... .+...|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 346789999999999999999887766432 2344444321 1122222222111 1234599
Q ss_pred EechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCC
Q 045279 222 FIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPG 298 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~ 298 (702)
||||++.-..+.-.. +-.-+|++++-+...+++.... .+..-.++.+|||+++.. .+++++.|
T Consensus 105 fiDDlN~p~~d~ygt------q~~iElLRQ~i~~~g~yd~~~~------~~~~i~~i~~vaa~~p~~Gr~~is~R~~r-- 170 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGT------QPPIELLRQLIDYGGFYDRKKL------EWKSIEDIQFVAAMNPTGGRNPISPRFLR-- 170 (272)
T ss_dssp EEETTT-S---TTS--------HHHHHHHHHHHCSEEECTTTT------EEEEECSEEEEEEESSTTT--SHHHHHHT--
T ss_pred EecccCCCCCCCCCC------cCHHHHHHHHHHhcCcccCCCc------EEEEEeeeEEEEecCCCCCCCCCChHHhh--
Confidence 999997655443222 2233566666555555543211 111123489999998754 58899999
Q ss_pred CcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 299 RFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 299 Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.| .++.++.|+.+....|+..++..
T Consensus 171 ~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 171 HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred he-EEEEecCCChHHHHHHHHHHHhh
Confidence 88 78999999999999999876653
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=105.41 Aligned_cols=133 Identities=21% Similarity=0.299 Sum_probs=94.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------------------EEEechhhhc--------------
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF-------------------------YKISATEVVS-------------- 196 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~-------------------------~~i~~~~l~~-------------- 196 (702)
+-++.+||+||+|+||+++|+.+|+.+.+.. +.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5567899999999999999999999885421 1121110000
Q ss_pred cccc---------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 GVSG---------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~~~g---------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
...| -.-..++.+...+. .+...|++||++|.|... ..+.||+.+++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE--------- 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AANALLKTLEE--------- 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHHHHHHHhcC---------
Confidence 0000 11234555555432 233459999999988744 34568998886
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|.++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 159 ----------Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 ----------PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ----------CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 46679999999999999999999 99 77999999999988888653
|
|
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-09 Score=121.82 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=105.7
Q ss_pred CCCCCceEEEECCCCCCHHHH-HHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhC---------------
Q 045279 154 GVRPMAGILLYGPPGCGKTKL-AHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA--------------- 217 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~l-a~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~--------------- 217 (702)
.+...++++++||||+|||++ .-+|-.++-..++.+|.+.-.. ...+-.++++-....
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~------T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM------TPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC------CHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 355778999999999999996 4567777778888888765322 122223333322111
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCC-----Cc
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAV-----DP 292 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~l-----d~ 292 (702)
..|||.|||+ |+....- ...-+-.+++.|-+.+.++.+...... .--++++.|+||++... +.
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y-----~~~~vI~FlR~l~e~QGfw~s~~~~wv------TI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEY-----YPPTVIVFLRPLVERQGFWSSIAVSWV------TICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred heEEEeeccC-Ccccccc-----CCCceEEeeHHHHHhcccccchhhhHh------hhcceEEEccCCCCCCcccCccHH
Confidence 1399999998 4322211 111122244444444444333222111 12348999999997643 34
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-------------cccHH--------HHHhhCCCCCHHHHHHH
Q 045279 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-------------SFDLV--------KIARSTPGFVGADLAAL 351 (702)
Q Consensus 293 al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-------------~~~~~--------~la~~t~g~~~~dl~~l 351 (702)
++.| |- ..+.+.+|....+.+|+..++....+-. .+.+- ...+..-+|+||+|.++
T Consensus 1632 Rf~r--~~-v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~ 1708 (3164)
T COG5245 1632 RFIR--KP-VFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRS 1708 (3164)
T ss_pred HHhc--Cc-eEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHH
Confidence 5555 43 5678999999999999987665432110 11111 11122357999999888
Q ss_pred HHHHHH
Q 045279 352 ANKAGN 357 (702)
Q Consensus 352 ~~~a~~ 357 (702)
++....
T Consensus 1709 lr~i~~ 1714 (3164)
T COG5245 1709 LRAIFG 1714 (3164)
T ss_pred HHHHHh
Confidence 775443
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-08 Score=110.51 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
.-|++++|++++++.+...+. .+.+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 468999999999998887662 22489999999999999999999988654
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=102.77 Aligned_cols=145 Identities=13% Similarity=0.227 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
.+....+.+...+.. -+-++.+||+||+|+||+++|+.+|+.+.+.
T Consensus 6 W~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 6 WLQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 355666666655521 2345789999999999999999999987431
Q ss_pred --eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 186 --FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 186 --~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
++.+... .+ ..-....++.+.+.+. .+...|++||++|.|... ..+.||+.+++
T Consensus 74 PD~~~i~p~---~~-~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~-----------AaNaLLKtLEE----- 133 (325)
T PRK06871 74 PDFHILEPI---DN-KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA-----------AANALLKTLEE----- 133 (325)
T ss_pred CCEEEEccc---cC-CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHH-----------HHHHHHHHhcC-----
Confidence 1112110 00 0112345555554443 334469999999988744 34569999886
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|+++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 134 --------------Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 134 --------------PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred --------------CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999 98 77999999999988887754
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-07 Score=91.57 Aligned_cols=131 Identities=22% Similarity=0.273 Sum_probs=86.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||++.|. -+-+.-|=..+++ .---++|++||+ |+.|+-.|+. |.
T Consensus 288 vpGVLFIDEvHMLD-----------IEcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~- 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD-----------IECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM- 350 (454)
T ss_pred ccceEEEeeehhhh-----------hHHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-
Confidence 58899999999876 3333333233332 112367778875 4566667766 66
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTI 668 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i 668 (702)
.+|...+++.++..+||+..+.+..+.-+.+ ++.|. .+...-+=+-.-+++..|.+.|.++.-. .+
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt--~i~~~tsLRYai~Lit~a~~~~~krk~~-----------~v 417 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT--KIGEATSLRYAIHLITAASLVCLKRKGK-----------VV 417 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhcCc-----------ee
Confidence 4788889999999999999998876654433 33333 2222223355556777777777777543 78
Q ss_pred cHHHHHHHHhhcCC
Q 045279 669 KLTHFEQALSKISP 682 (702)
Q Consensus 669 ~~~d~~~al~~~~~ 682 (702)
..+|++.|+.-+..
T Consensus 418 ~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 418 EVDDIERVYRLFLD 431 (454)
T ss_pred ehhHHHHHHHHHhh
Confidence 88999999887744
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=91.74 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=120.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CC----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GV---------------- 184 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~---------------- 184 (702)
+++.+.+.++....+..... -..-.|+++|||+|+||-|.+.++.+++ |.
T Consensus 11 sl~~l~~~~e~~~~Lksl~~-------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS-------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc-------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 68888998888888875441 1223679999999999999999998876 21
Q ss_pred ------------CeEEEechhhhcccccccHH-HHHHHHHHHHhhC---------CceEEechhhHhhhcchhhhHHHHH
Q 045279 185 ------------PFYKISATEVVSGVSGASEE-NIRDLFSKAYRTA---------PSIVFIDEIDAIASKRENLQREMER 242 (702)
Q Consensus 185 ------------~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~---------p~il~iDEid~l~~~~~~~~~~~~~ 242 (702)
..+++++++. |..+. .+.+++....... ..+++|-|+|.|..+.+.
T Consensus 78 ~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~------- 145 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH------- 145 (351)
T ss_pred CceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH-------
Confidence 1123333332 32222 3455555544332 249999999988755433
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 243 ~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.|.+.|+.+. +++++|..||....+-+++++ |+ -.|.++.|+.++-..++...+
T Consensus 146 ----aLRRTMEkYs-------------------~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~ 199 (351)
T KOG2035|consen 146 ----ALRRTMEKYS-------------------SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVL 199 (351)
T ss_pred ----HHHHHHHHHh-------------------cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHH
Confidence 4667777653 358899999999999999999 88 679999999999999999998
Q ss_pred cCcccCCccc-HHHHHhhCCC
Q 045279 323 RNLRVEGSFD-LVKIARSTPG 342 (702)
Q Consensus 323 ~~~~~~~~~~-~~~la~~t~g 342 (702)
++..+....+ +..+++...|
T Consensus 200 ~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 200 KKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHhcccCcHHHHHHHHHHhcc
Confidence 8877654443 5567766655
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=93.39 Aligned_cols=54 Identities=35% Similarity=0.400 Sum_probs=39.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.-.-++|++.+.+..--.+ ..++. ..-.++.+||.||||||||.||-+|++++|
T Consensus 36 ~~~g~vGQ~~AReAagiiv-dlik~-------KkmaGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIV-DLIKS-------KKMAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccccchhhhhhhhHHH-HHHHh-------hhccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 4567899998887644222 22222 233568899999999999999999999984
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=103.93 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=95.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|.++|..+-+ .+..+.+..- +. .-+...+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHH
Confidence 55678999999999999999999987622 1222221100 00 012345566655
Q ss_pred HHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+. .....|++||++|.+. ....|.||+.|+.. ..++++|.+|+.++.|-|.+++ |+- .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 443 3456799999999999 89999999999964 5678888899999999999988 996 68
Q ss_pred EcCCCCHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILE 607 (702)
Q Consensus 593 ~~~~p~~~~r~~il~ 607 (702)
.|++|+.++....+.
T Consensus 163 ~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAPPPEQYALTWLS 177 (334)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999887776664
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=112.09 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------------------KRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~~--~~ld~ 580 (702)
..++|||||++.|. ...+..|+..|.... -..++.||+++|+. ..+||
T Consensus 226 nGGtL~LDei~~L~-----------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp 294 (637)
T PRK13765 226 HKGVLFIDEINTLD-----------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP 294 (637)
T ss_pred CCcEEEEeChHhCC-----------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH
Confidence 45799999999886 667777777764311 11356888888874 57799
Q ss_pred cccCCCccc---eEEEcCC--C-CHHHHHHHHHHHhccCCC---CCCCC---HHHHhhhhc--C--CC---CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPL--P-TPDERGLILEALARKKPI---DDSVD---LHTIAQSKF--C--EN---LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~--p-~~~~r~~il~~~~~~~~~---~~~~~---~~~la~~~~--~--~~---~sg~dl~~~ 641 (702)
+|.. ||. ..+.|.. + +.+.+..+++...+.... ....+ +..+..... . .+ ..-++|..+
T Consensus 295 dL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l 372 (637)
T PRK13765 295 ALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGL 372 (637)
T ss_pred HHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHH
Confidence 9987 875 5566653 2 245666666654443221 11222 223332110 0 11 235789999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHH
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRY 692 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 692 (702)
+++|...|..+... .|+.+|+.+|+... .++.++..+.|
T Consensus 373 ~r~a~~~a~~~~~~-----------~i~~~~v~~a~~~~-~~i~~~~~~~~ 411 (637)
T PRK13765 373 VRVAGDIARSEGAE-----------LTTAEHVLEAKKIA-RSIEQQLADRY 411 (637)
T ss_pred HHHHHHHHHhhccc-----------eecHHHHHHHHHhh-hhhhHHHHHHH
Confidence 99988777666432 68899999998553 33544444433
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-08 Score=100.02 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=106.8
Q ss_pred cc-ccCCcccchhhhHHHHHHHhhChHHHHHcCC-CCCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEEec--
Q 045279 428 WE-DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV-DLETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHIKG-- 496 (702)
Q Consensus 428 ~~-~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~-- 496 (702)
|+ ++.|+++++..+.+.+.... .|. .....++|+||||+|||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 44 79999999887776654442 122 23466899999999999999999998855 7777765
Q ss_pred --ccccccCcCchHH-----------------------------------------------------------------
Q 045279 497 --PELLNKYVGESEL----------------------------------------------------------------- 509 (702)
Q Consensus 497 --~~l~~~~~g~~~~----------------------------------------------------------------- 509 (702)
+.+.....+-...
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 3222110000000
Q ss_pred -HHHHHHH-----H-----------------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----
Q 045279 510 -AVRTLFS-----R-----------------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----- 561 (702)
Q Consensus 510 -~~~~~f~-----~-----------------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----- 561 (702)
.+..+.. + .-..+.+|+-|+|+.+.. .++++.||..++...
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~-----------~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKAD-----------IKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCC-----------HHHHHHHhhhhhcceEecCC
Confidence 0111110 0 011234678888888777 889999999887521
Q ss_pred ----CCCcEEEEEecCCCC-------ccCccccCCCccceEEEcCCCC-HHHHHHHHHHHhccC
Q 045279 562 ----KRKGVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPT-PDERGLILEALARKK 613 (702)
Q Consensus 562 ----~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~-~~~r~~il~~~~~~~ 613 (702)
-.-..+||++||..+ ...++|++ ||. .+++|.+. ..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 112357888999762 56788988 997 88888775 566678888887753
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-09 Score=116.88 Aligned_cols=142 Identities=21% Similarity=0.367 Sum_probs=94.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhcccccccH--HHH--------HHHHHHHHhhCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVSGVSGASE--ENI--------RDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~~~~g~~~--~~~--------~~~f~~a~~~~p~il~iDEi 226 (702)
.+|||.|+||||||++|++|++.++. +|+.+..........|... ..+ .+++..+ ...+||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 68999999999999999999998764 5888876433333334321 000 1112222 2349999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcceE
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFDRE 303 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~ 303 (702)
+.+... ....|+..|++....+... +.....+.+++||+|+|+.+ .+.+++.. ||..+
T Consensus 94 ~rl~~~-----------~q~~Ll~al~~g~v~i~r~------G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 94 NLLDDG-----------LSNRLLQALDEGVVIVERE------GISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred hhCCHH-----------HHHHHHHHHHcCCeEEEEC------CCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 988754 3445777777533211111 11222345689999999875 78899999 99887
Q ss_pred EEeC-CCCHHHHHHHHHHhh
Q 045279 304 IVLG-VPDENARVQILSVLT 322 (702)
Q Consensus 304 i~~~-~p~~~er~~Il~~~~ 322 (702)
+.+. .|+.++|.+|++...
T Consensus 155 v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 7666 557788999998765
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.2e-08 Score=100.11 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=94.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe---------------------EEEEe--cccccccC-cCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN---------------------FIHIK--GPELLNKY-VGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------------------~~~i~--~~~l~~~~-~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|.++|..+-+. +..+. +.+-..+. ..-.-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 456679999999999999999999866221 12221 10000000 0012445666666
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ....|++||++|.+. ....|.||+.|+... .++++|.+|+.++.|-|.+++ |+ ..+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRL 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEe
Confidence 5533 345799999999998 889999999999654 466777789999999999988 99 488
Q ss_pred EcCCCCHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEA 608 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~ 608 (702)
.|+.|+.++....+..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 168 EFKLPPAHEALAWLLA 183 (319)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 8999999877766653
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-08 Score=100.83 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-----------------------eEEEEecccccccCcCchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-----------------------NFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-----------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
+.+..+||+||.|+||+++|+.+|..+-+ .|..+.... .++. -+...+|.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 55678999999999999999999986622 222232211 0011 123456666555
Q ss_pred HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEE
Q 045279 518 AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593 (702)
Q Consensus 518 a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~ 593 (702)
+. .....|++||++|.+. ....|.||+.|+.. ..++++|..|+.++.+-|.+++ |+- .+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 43 2346799999999999 88999999999964 4578888899999999999988 994 889
Q ss_pred cCCCCHHHHHHHHHH
Q 045279 594 VPLPTPDERGLILEA 608 (702)
Q Consensus 594 ~~~p~~~~r~~il~~ 608 (702)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999887776653
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-08 Score=109.45 Aligned_cols=124 Identities=25% Similarity=0.384 Sum_probs=80.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC----eEEEEec------c-----cc-----ccc--------CcCchHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA----NFIHIKG------P-----EL-----LNK--------YVGESELAVR 512 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~i~~------~-----~l-----~~~--------~~g~~~~~~~ 512 (702)
....+++|+||||+|||++++.++..+.. ..+.+.. . .+ ... .+|.+...--
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 45678999999999999999999986521 1111110 0 01 000 1121111111
Q ss_pred HHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-----
Q 045279 513 TLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD----- 576 (702)
Q Consensus 513 ~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~----- 576 (702)
..+..| ..++|||||++.+. ..++..|++.|+... ...++.+|+|+|...
T Consensus 288 G~l~~A---~gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 288 GEISLA---HNGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred hHhhhc---cCCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 234444 45899999999887 788888888886522 235689999999742
Q ss_pred ----------------ccCccccCCCccceEEEcCCCCHH
Q 045279 577 ----------------VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 577 ----------------~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
.+..+++. |||..+.++.++.+
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36667777 99999999988643
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=114.91 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=103.6
Q ss_pred ccccCHHHHHHHHHHHhhhhccCC----Ccc----cccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEE
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHP----QLP----QWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VPFYK 188 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~----~~~----~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~ 188 (702)
-.|.|++.+|+.+.-.+..-.... ... ....++...+|||+|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 468999999988764443222110 000 002345667999999999999999999988653 23344
Q ss_pred Eechhhhcc---cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 189 ISATEVVSG---VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 189 i~~~~l~~~---~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
+.+...... ..|..... .+.+..|. ..+++|||++.|....+ ..|+..|+.-...+...
T Consensus 530 vgLTa~~~~~d~~tG~~~le-~GaLvlAd---gGtL~IDEidkms~~~Q-----------~aLlEaMEqqtIsI~Ka--- 591 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQ-PGAVVLAN---GGVCCIDELDKCHNESR-----------LSLYEVMEQQTVTIAKA--- 591 (915)
T ss_pred ccccchhhhcccccCccccc-CCcEEEcC---CCeEEecchhhCCHHHH-----------HHHHHHHhCCEEEEecC---
Confidence 433332210 01111000 11222332 34999999998874432 34666676432211111
Q ss_pred CCCCCCCCCCCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhhcC
Q 045279 266 SKSDASDSKPGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~~~ 324 (702)
+.....+.++.||||+|+.+ .+++++++ ||+-++ .++.|+.+.=..|..++++.
T Consensus 592 ---Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 592 ---GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred ---CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 11122345689999999953 57899999 998765 56677776666666665543
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-08 Score=101.01 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=101.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC------------------------eEEEechhhhcccccccHHHHHHHHH
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVP------------------------FYKISATEVVSGVSGASEENIRDLFS 211 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 211 (702)
+-++.+||+||+|+||+++|.++|+.+-+. ++.+.... +...-....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKSSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccccCCHHHHHHHHH
Confidence 456789999999999999999999987331 11121100 000012334555554
Q ss_pred HHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC
Q 045279 212 KAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP 287 (702)
Q Consensus 212 ~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~ 287 (702)
.+. .+...|++||++|.|... ..+.||+.+++ .|+++++|.+|+.+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE-------------------Pp~~t~fiL~t~~~ 148 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA-----------AANALLKTLEE-------------------PPENTWFFLACREP 148 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHH-----------HHHHHHHHhcC-------------------CCCCeEEEEEECCh
Confidence 443 345569999999998744 34569999986 46779999999999
Q ss_pred CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 288 DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 288 ~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
+.+.|.+++ |+ ..+.|++|+.++..+.+.... ... ......+++...|-.+
T Consensus 149 ~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 149 ARLLATLRS--RC-RLHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred hhChHHHHh--cc-ccccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 999999999 99 468999999988777775321 111 1223445556666443
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=97.86 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-----EEechhhhcc-----
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-----KISATEVVSG----- 197 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-----~i~~~~l~~~----- 197 (702)
.+..+.+.+...+. .-+-++.+||+||+|+||+++|.++|+.+-+.-. .-+|.-+..+
T Consensus 8 W~~~~~~~l~~~~~------------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 8 WQQRAYDQTVAALD------------AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred cHHHHHHHHHHHHH------------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 35566777776552 1234567999999999999999999988733110 0001001000
Q ss_pred --------ccc------ccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 198 --------VSG------ASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 198 --------~~g------~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..| -....++.+.+.+.. +...|++||++|.|... ..+.||+.+++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE----- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRA-----------ACNALLKTLEE----- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-----------HHHHHHHHhhC-----
Confidence 001 113345555554432 23469999999998743 34568998886
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~ 339 (702)
.|+++++|.+|+.++.+-|.+++ |+ ..+.|+.|+.++..+.+... ... ......++..
T Consensus 140 --------------Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l 197 (319)
T PRK08769 140 --------------PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDA 197 (319)
T ss_pred --------------CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHH
Confidence 35678899999999999999999 99 77999999998887777642 111 1223345556
Q ss_pred CCCCCHHH
Q 045279 340 TPGFVGAD 347 (702)
Q Consensus 340 t~g~~~~d 347 (702)
..|-.+..
T Consensus 198 ~~G~p~~A 205 (319)
T PRK08769 198 ARGHPGLA 205 (319)
T ss_pred cCCCHHHH
Confidence 66654433
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.5e-08 Score=100.43 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-------------------------eEEEEecccc---cccC-cCchHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-------------------------NFIHIKGPEL---LNKY-VGESELAV 511 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------------------~~~~i~~~~l---~~~~-~g~~~~~~ 511 (702)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+.+..- .++. ..-+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56678999999999999999999997632 2333433110 0000 00134567
Q ss_pred HHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCc
Q 045279 512 RTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGR 587 (702)
Q Consensus 512 ~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gR 587 (702)
|.+.+.+.. ....|++||+++.+. ....+.|+..|+... .++.+|++|+.++.+.+.+.+ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 777776653 345799999999998 888999999998764 346677789999999999888 8
Q ss_pred cceEEEcCCCCHHHHHHHHHH
Q 045279 588 FGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 588 f~~~i~~~~p~~~~r~~il~~ 608 (702)
+ ..+.|++|+.++....+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 8 5888999999887766643
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=97.99 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
.+....+.+...+. .-+-++.+||+||.|+||+++|+.+|+.+-+.
T Consensus 7 Wl~~~~~~l~~~~~------------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 7 WLVPVWQNWKAGLD------------AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred cHHHHHHHHHHHHH------------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666777765552 12446789999999999999999999987321
Q ss_pred -eEEEechhhhcccccc--cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 186 -FYKISATEVVSGVSGA--SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 186 -~~~i~~~~l~~~~~g~--~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
++.+.... .|. ....++.+.+.+. .++..|++||++|.|... ..+.||+.+++
T Consensus 75 D~~~i~p~~-----~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---- 134 (319)
T PRK06090 75 DLHVIKPEK-----EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-----------ASNALLKTLEE---- 134 (319)
T ss_pred CEEEEecCc-----CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-----------HHHHHHHHhcC----
Confidence 22222110 011 2234555544432 234569999999998743 34568999886
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.|.++++|..|+.++.+-|.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 135 ---------------Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 135 ---------------PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ---------------CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 46679999999999999999999 99 6799999999998887764
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-08 Score=101.19 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=74.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCc----CchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYV----GESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
+.|++|+|++|||||+||.++|+.+ +.+++.++.++++..+. +........++.... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 77888888888765432 111112223333332 44699999996432
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC-Cc----cCccccCCCcc---ceEEEcCCCCHH
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP-DV----MDRAVLRPGRF---GKLLYVPLPTPD 600 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~-~~----ld~a~~r~gRf---~~~i~~~~p~~~ 600 (702)
.. ...+..|...++.... .+..+|.|||.+ .. ++..+.. |+ -..|.++-++..
T Consensus 192 ------~t---~~~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~R 252 (268)
T PRK08116 192 ------DT---EWAREKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSYR 252 (268)
T ss_pred ------CC---HHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcChh
Confidence 11 2223334444443211 122366688874 22 4666665 64 345666666653
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-08 Score=111.04 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=118.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+..++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4567888888877777665321 2345679999999999999999997765 4689999999874321
Q ss_pred -----ccc----c---HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 -----SGA----S---EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 -----~g~----~---~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.|. . .....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~-~~~~~--- 267 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVI-ERLGG--- 267 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH-----------HHHHHHHhhCeE-EeCCC---
Confidence 110 0 00112223333 345999999998875433 345565553211 01111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E--- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~--- 328 (702)
....+.++++|++|+.. ..+.+.|.. |+ ..+.+..|+..+|.+ ++..++..+.. .
T Consensus 268 ----~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (445)
T TIGR02915 268 ----REEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKG 340 (445)
T ss_pred ----CceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 11123458999999874 234444544 66 457788888887765 33334333211 1
Q ss_pred Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 329 GS-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 329 ~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.. ..+..+....=-.+.++|++++..|+..
T Consensus 341 ~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 341 FTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 11 1233344333234778899888887654
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-07 Score=92.02 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=96.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-CeEE---Eec----hhhh----ccc----ccccH-H---HHHHHH-HHHHhhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV-PFYK---ISA----TEVV----SGV----SGASE-E---NIRDLF-SKAYRTA 217 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~-~~~~---i~~----~~l~----~~~----~g~~~-~---~~~~~f-~~a~~~~ 217 (702)
..++|+||+|+||||+++.+++.+.. .+.. +++ .++. ..+ .+... . .+...+ .....+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45899999999999999999998762 2221 111 1111 001 11111 1 122222 2223456
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC--CCCC-C---
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR--PDAV-D--- 291 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~--~~~l-d--- 291 (702)
+.+|+|||++.+.... ...+ ..+..... .....+.|+.+..+ .+.+ +
T Consensus 124 ~~vliiDe~~~l~~~~-----------~~~l-~~l~~~~~---------------~~~~~~~vvl~g~~~~~~~l~~~~~ 176 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL-----------LEEL-RMLSNFQT---------------DNAKLLQIFLVGQPEFRETLQSPQL 176 (269)
T ss_pred CeEEEEECcccCCHHH-----------HHHH-HHHhCccc---------------CCCCeEEEEEcCCHHHHHHHcCchh
Confidence 6799999998775221 1112 11211100 01112333333322 1122 1
Q ss_pred ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc-----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV-----EGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 292 ~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~-----~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
..+.+ |+...+.+++.+.++..+++...+..... -....+..+++.+.|.. +.+..+|..+...+..
T Consensus 177 ~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 177 QQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFL 248 (269)
T ss_pred HHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHH
Confidence 23556 77778899999999999999887764432 12234677888888875 4588888887766544
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-07 Score=95.57 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=106.1
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc--------
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP-------- 497 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~-------- 497 (702)
..|.-+.|++.+|..|--.- -.+.-.|+|+.|+.|||||+++|+||..+.---+...|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~a-------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA-------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhh-------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 34667888888887663211 123346789999999999999999999873211111110
Q ss_pred ------------------------cccccCcCchHHH------HHHHHH----------HHHhCCCeEEEEeCcchhhcc
Q 045279 498 ------------------------ELLNKYVGESELA------VRTLFS----------RARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 498 ------------------------~l~~~~~g~~~~~------~~~~f~----------~a~~~~~~vl~iDEid~l~~~ 537 (702)
.++..=.|.++.. +....+ .|+ ...+||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc--
Confidence 0111111223331 111111 122 255899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~ 604 (702)
+.+++.||..+..- ....++++|+|+|.-+ .|-|.++- ||...+.+..|. .++|..
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 89999999877651 2345789999999754 68888888 999999888765 688999
Q ss_pred HHHHHhcc
Q 045279 605 ILEALARK 612 (702)
Q Consensus 605 il~~~~~~ 612 (702)
|.+..+.-
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 98876554
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=100.59 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc-c------ccCcCchHH-----HHHHHHH-----HHH-----
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL-L------NKYVGESEL-----AVRTLFS-----RAR----- 519 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l-~------~~~~g~~~~-----~~~~~f~-----~a~----- 519 (702)
..+-+||+||||||||+++++||++++..+.+...+.. . ..|.+.... .--..|. .++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~ 123 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLS 123 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 34457889999999999999999999988877542221 1 111111000 0011122 111
Q ss_pred ------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe-cC------CC--------Ccc
Q 045279 520 ------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA-TN------RP--------DVM 578 (702)
Q Consensus 520 ------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a-tn------~~--------~~l 578 (702)
...+.||+|+|+=.+.... . .++...|...+... ....+++|++ +. .. ..+
T Consensus 124 ~~g~~~~~~~kvILVEDlPN~~~~~------~-~~f~~~L~~~l~~~-~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~ 195 (519)
T PF03215_consen 124 MSGSNSSSNKKVILVEDLPNVFHRD------T-SRFREALRQYLRSS-RCLPLVFIISETESLSGDNSYRSNSFTAERLF 195 (519)
T ss_pred ccCCCcCCCceEEEeeccccccchh------H-HHHHHHHHHHHHcC-CCCCEEEEEecccccCCCCcccccchhhhhcc
Confidence 1246799999987655221 1 22333333333321 1115556555 11 11 145
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccC--------CCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK--------PIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~--------~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
.+.++...++ ..|.|.+-...-..+.|+..+... ....... ++.|+. -++||||.+|+.....+
T Consensus 196 ~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~------~s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 196 PKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAE------SSNGDIRSAINNLQFWC 268 (519)
T ss_pred CHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHH------hcCchHHHHHHHHHHHh
Confidence 5666543345 478888887766666666655543 1111122 556662 26689999999888888
Q ss_pred H
Q 045279 650 L 650 (702)
Q Consensus 650 ~ 650 (702)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 7
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-08 Score=110.00 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=120.2
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+.+++|.......+.+.+.. ......++++.|++|||||++|++|.... +.+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 467789988888877766632 12345679999999999999999998875 4699999998763321
Q ss_pred -----ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 -----SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 -----~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.|... ....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~-~~~~~~~- 268 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQF-YRVGGYA- 268 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH-----------HHHHHHHhcCcE-EeCCCCC-
Confidence 11100 0001223333 245999999998875433 346666653211 1111111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E--- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~--- 328 (702)
..+-++.+|+||+..- .+.+.|.. || ..+.+..|+..+|.+ ++..++..... .
T Consensus 269 ------~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 339 (469)
T PRK10923 269 ------PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL 339 (469)
T ss_pred ------eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 1123589999997631 35556666 77 456777777766654 44444433211 1
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 -GSFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 -~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
....+..+....=-.+.++|+++++.++..+
T Consensus 340 ~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 340 LHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 1112333443333347789999988876543
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=89.52 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=111.9
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEechhhhc
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISATEVVS 196 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~~~l~~ 196 (702)
-+|+..+.+.+. .+...+.+|. .....++||+|++|.|||++++.+..... .|++.+.+..-.+
T Consensus 36 WIgY~~A~~~L~-~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 36 WIGYPRAKEALD-RLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred eecCHHHHHHHH-HHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 366666655444 3334444443 23346799999999999999999987642 3566655432111
Q ss_pred c--------------c-c-cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 197 G--------------V-S-GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 197 ~--------------~-~-g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
. + . ......-..++......++.+|+|||+|.++......+ +.+++.|...-.++.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q----r~~Ln~LK~L~NeL~---- 180 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ----REFLNALKFLGNELQ---- 180 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH----HHHHHHHHHHhhccC----
Confidence 1 1 0 11111122233344455777999999999875432221 222333322222211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCC--CCCccccCCCCcceEEEeCCCC-HHHHHHHHHHhhcCcccCCc-----cc
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPD--AVDPALRRPGRFDREIVLGVPD-ENARVQILSVLTRNLRVEGS-----FD 332 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~~~~~~~~~~-----~~ 332 (702)
=.++.+||..-.. .-|+.+.+ || ..+.+|... .++...++..+-..+.+... ..
T Consensus 181 ---------------ipiV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~ 242 (302)
T PF05621_consen 181 ---------------IPIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPE 242 (302)
T ss_pred ---------------CCeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence 1155555433222 45788888 99 446666543 35566666666555544321 12
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
...+...+.|..| ++..++..|+..|++
T Consensus 243 la~~i~~~s~G~iG-~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 243 LARRIHERSEGLIG-ELSRLLNAAAIAAIR 271 (302)
T ss_pred HHHHHHHHcCCchH-HHHHHHHHHHHHHHh
Confidence 3456667777554 778888888777765
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-09 Score=110.93 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=91.3
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---------CeEEEEec
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---------ANFIHIKG 496 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~ 496 (702)
..|.|+.|++..|+.+.-+. .-..|+||+||||||||++|+-+...+. ...+..-.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 46889999999999885432 3457899999999999999999987541 01011000
Q ss_pred cccccc--------C--cCchHHHHHHHHH--------HHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 497 PELLNK--------Y--VGESELAVRTLFS--------RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 497 ~~l~~~--------~--~g~~~~~~~~~f~--------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.++... | .+.+... ..+.. ..-....+||||||+-.+- +.+++.|.+-|+
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~-----------~~iLe~LR~PLE 308 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAHNGVLFLDELPEFK-----------RSILEALREPLE 308 (490)
T ss_pred ccccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeecCCEEEeeccchhh-----------HHHHHHHhCccc
Confidence 111100 0 0111100 01110 0111244799999988776 888999988887
Q ss_pred CCC-----------CCCcEEEEEecCCC-----------------------CccCccccCCCccceEEEcCCCCHHHH
Q 045279 559 GAD-----------KRKGVFVIGATNRP-----------------------DVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 559 ~~~-----------~~~~~~vI~atn~~-----------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
... -..++.+|+++|.. ..|...|+. |||..+.++.++..++
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 621 12456778888842 245556666 9999999998775443
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-06 Score=90.91 Aligned_cols=230 Identities=20% Similarity=0.227 Sum_probs=141.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc---
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK--- 502 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~--- 502 (702)
+.|-+.-...+++++...+ ....+.++.+.|.||||||.+..-+-... ....+.++|..+...
T Consensus 152 l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4555666666666554443 23556788999999999999888555433 224578888754321
Q ss_pred -------C----cC-chHHHHHHHHHHHH-hC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 503 -------Y----VG-ESELAVRTLFSRAR-TC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 503 -------~----~g-~~~~~~~~~f~~a~-~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
+ ++ .++......|..-. .. .+-||++||+|.|..++ .+++.++. ++.. -...++++
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~~vLy~lF-ewp~-lp~sr~iL 292 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------QTVLYTLF-EWPK-LPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------cceeeeeh-hccc-CCcceeee
Confidence 1 11 22333344444322 22 36789999999999544 22333322 2222 24567889
Q ss_pred EEecCCCCccCccccC----CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC--HHHHhhhhcCCCCCHHHHHH--
Q 045279 569 IGATNRPDVMDRAVLR----PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD--LHTIAQSKFCENLSGADLAA-- 640 (702)
Q Consensus 569 I~atn~~~~ld~a~~r----~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~~~~~sg~dl~~-- 640 (702)
|+..|..+.-|..+.| -+--...+.|++|+.++...|+...+.........+ ++..|. ...+-| ||+|.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~Ar--Kvaa~S-GDlRkaL 369 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCAR--KVAAPS-GDLRKAL 369 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHH--HhccCc-hhHHHHH
Confidence 9999988765554432 123457899999999999999999998877654433 445552 233433 67775
Q ss_pred -HHHHHHHHHHHHHHhhcC-----CCCCCCCccccHHHHHHHHhhcCC
Q 045279 641 -MMNEAAMAALEDKLISSK-----SSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 641 -~~~~a~~~a~~~~~~~~~-----~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+|+.|...+-.+...... ..+......|..+|+..++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 677787777666544311 011111235668888888887754
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=94.41 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=109.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe------EEEe
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------YKIS 190 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------~~i~ 190 (702)
+..+..++++++.+++...+.+.. +...-.+.|+|||||||||+...+.|..+..+. ..++
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 345568999999999999888764 333334899999999999999999999886531 1223
Q ss_pred chhhhcccccccHHHHHHHHHHHHh-------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYR-------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+++-. ..+-. ..-...|..... ..+.++++||.|.|..+.++. |.+..+.+.
T Consensus 101 aSd~r--gid~v-r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnA-----------LRRviek~t------- 159 (360)
T KOG0990|consen 101 ASDDR--GIDPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNA-----------LRRVIEKYT------- 159 (360)
T ss_pred ccCcc--CCcch-HHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHH-----------HHHHHHHhc-------
Confidence 32211 11111 112234444432 256799999999998665543 333333322
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~ 328 (702)
.++.++..+|++..+.|++++ ||. .+.|.+.+......++.+++......
T Consensus 160 ------------~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 160 ------------ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred ------------cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 246777788999999999999 984 47788888778888888777655443
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-08 Score=107.25 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=105.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchH----HHHHHHHHHHHhCCCeEEEEe
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESE----LAVRTLFSRARTCSPCILFFD 529 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~----~~~~~~f~~a~~~~~~vl~iD 529 (702)
...++++.|.+||||+++|+++.... +.+|+.++|..+...+ .|... ..............++.||||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 34568999999999999999998865 5699999998763221 11000 000000001112356899999
Q ss_pred CcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc-eEE
Q 045279 530 EVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLL 592 (702)
Q Consensus 530 Eid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i 592 (702)
|++.+. ..++..|+..++... ...++.||++|+.. ..+.+.+.. |+. ..|
T Consensus 236 ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 236 EIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred chhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 999998 777888887776421 11256788888753 234444444 554 366
Q ss_pred EcCCCC--HHHHHHHHHHHhccCCCCC---CCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 593 YVPLPT--PDERGLILEALARKKPIDD---SVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 593 ~~~~p~--~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
.+|+.. .++...++..++....... ...+..-+...+ ..+|.| ++|+++|..|+..+
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 777666 4566667766655431110 011222221122 236766 99999999888644
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.7e-07 Score=98.55 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--------------C------------c--Cch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--------------Y------------V--GES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------~------------~--g~~ 507 (702)
|+.++..+|+.||||+|||+++-.++... +.+.+.+...+-... + . ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67888889999999999999998887644 445566554332111 0 0 011
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
+..+..+.+.+....|.+|+||=+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4455666677777789999999988775
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=83.05 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
..++|+||.||||||+++.+++.+. ..++++++.+.......... +...+.......+.++|||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4589999999999999999998876 78888888775442111111 2233333222356799999998774
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=103.86 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCc-----Cch-------HHHHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYV-----GES-------ELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~-----g~~-------~~~~~~~f~~a~~~~~~vl 526 (702)
...+++++|++||||+++|+++.... +.+|+.++|..+..... |.. .......|.. ..+++|
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 237 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTL 237 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEE
Confidence 44678999999999999999998765 46899999987632211 100 0000011222 356899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~~ 590 (702)
||||++.+. ..++..|+..++... ...++.||++|+.. ..+.+.+.. |+.
T Consensus 238 ~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 303 (445)
T TIGR02915 238 FLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA- 303 (445)
T ss_pred EEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-
Confidence 999999999 788888888876421 11257888888764 234444433 443
Q ss_pred EEEcCCCCHHHHH----HHHHHHhccCCCC---CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 LLYVPLPTPDERG----LILEALARKKPID---DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ~i~~~~p~~~~r~----~il~~~~~~~~~~---~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+|. .+++.++.+.... ....+..-+...+ ...|.| ++|++++..|+..
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3344444444443 4555555442110 0111221111122 235655 9999999988864
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-09 Score=95.51 Aligned_cols=81 Identities=23% Similarity=0.475 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcccccccHH
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~~~g~~~~ 204 (702)
|....++++.+.+... .....+|+|+|++||||+++|++|..... .+|+.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4555666666655332 24457799999999999999999988764 366777777643
Q ss_pred HHHHHHHHHHhhCCceEEechhhHhhhcc
Q 045279 205 NIRDLFSKAYRTAPSIVFIDEIDAIASKR 233 (702)
Q Consensus 205 ~~~~~f~~a~~~~p~il~iDEid~l~~~~ 233 (702)
..+++.+ .+.+|||+|+|.+....
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3455555 45599999999887543
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=91.32 Aligned_cols=200 Identities=19% Similarity=0.203 Sum_probs=128.1
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhhhcc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEVVSG- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l~~~- 197 (702)
..+.|.+..+..+.+++...+ ....+..+.+.|-||||||....-+...+. ...++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578999999999998885543 456678899999999999999887755542 23478888865332
Q ss_pred --------------cccccHHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCC
Q 045279 198 --------------VSGASEENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQP 261 (702)
Q Consensus 198 --------------~~g~~~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 261 (702)
..+....+....|+.-..+ .+-++++||+|.|....+. .|...++.-
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-----------vLy~lFewp------ 283 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-----------VLYTLFEWP------ 283 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-----------eeeeehhcc------
Confidence 1112223344455544332 3568999999999854332 133322211
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc---ccC-CCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc--cHHH
Q 045279 262 GDQKSKSDASDSKPGYVLVIGATNRPDAVDPA---LRR-PGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF--DLVK 335 (702)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a---l~r-~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~--~~~~ 335 (702)
.-...++++||.+|..+.-|.. |.. .+--...+.|++|+.++..+|+...+......... .+..
T Consensus 284 ----------~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~ 353 (529)
T KOG2227|consen 284 ----------KLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIEL 353 (529)
T ss_pred ----------cCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHH
Confidence 1123458999999987743332 222 11223668999999999999999888877654333 3666
Q ss_pred HHhhCCCCCH--HHHHHHHHHHHHHH
Q 045279 336 IARSTPGFVG--ADLAALANKAGNLA 359 (702)
Q Consensus 336 la~~t~g~~~--~dl~~l~~~a~~~a 359 (702)
.|+...+.+| |.+..+|+.|...+
T Consensus 354 ~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 354 CARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHH
Confidence 7788777766 33334455554433
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=103.08 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHH---------------HHhCC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSR---------------ARTCS 522 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------------a~~~~ 522 (702)
....++++.|++|||||++|+++.... +.+|+.++|+.+.... .-..+|.. .....
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~ 232 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQAD 232 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECC
Confidence 345678999999999999999999876 5799999998763211 01112211 11224
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCC
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPG 586 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~g 586 (702)
++.|||||++.+. ...+..|+..++... ...++.||+||+.. ..+.+.+..
T Consensus 233 ~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~-- 299 (469)
T PRK10923 233 GGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH-- 299 (469)
T ss_pred CCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--
Confidence 6799999999999 788888888876531 12346788888753 235555555
Q ss_pred ccc-eEEEcCCCCH--HHHHHHHHHHhccCCCC--CC-CCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 587 RFG-KLLYVPLPTP--DERGLILEALARKKPID--DS-VDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 587 Rf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~--~~-~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
||. ..|.+|+... ++...++..++.+.... .. ..+..-+...+ ...|.| ++|+++++.|+..
T Consensus 300 ~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 663 4555665543 34555666666542111 01 11211111122 236776 9999999988864
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=95.55 Aligned_cols=202 Identities=19% Similarity=0.246 Sum_probs=120.5
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEechhh
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISATEV 194 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~~l 194 (702)
.|-+.+....+|...+...+.. -..+..+.+.|-||||||.+++.+-+.| ...++.||+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~--------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD--------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC--------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3455555555555555332221 0123479999999999999999987765 246788887665
Q ss_pred hcc----------cccccHH------HHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 195 VSG----------VSGASEE------NIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 195 ~~~----------~~g~~~~------~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.+. +.|.... .+..-|.... ...++|++|||+|.|....+. .|...+++-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd-----------VlYn~fdWp-- 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD-----------VLYNIFDWP-- 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH-----------HHHHHhcCC--
Confidence 432 2233211 1122222111 234689999999999976544 244444432
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
.....+++||+..|..+ .+.+...+ |++ ..+.|.+++-.+..+|+...+..........
T Consensus 536 --------------t~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~a 599 (767)
T KOG1514|consen 536 --------------TLKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKA 599 (767)
T ss_pred --------------cCCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhH
Confidence 11345588888888755 23444444 543 5689999999999999998888774333323
Q ss_pred HHHHHhhCCCCCH--HHHHHHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVG--ADLAALANKAGNLAMKRI 363 (702)
Q Consensus 333 ~~~la~~t~g~~~--~dl~~l~~~a~~~a~~r~ 363 (702)
+..+++.....+| +-...+|++|...+-.+.
T Consensus 600 ielvarkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 600 IELVARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 3333443333333 445567777777665554
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=98.26 Aligned_cols=131 Identities=22% Similarity=0.390 Sum_probs=89.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-------------------------CeEEEechhhhccccc-----ccHHH
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV-------------------------PFYKISATEVVSGVSG-----ASEEN 205 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~-------------------------~~~~i~~~~l~~~~~g-----~~~~~ 205 (702)
+-++.+||+||+|+|||++|+.+|+.+.+ .|+.+++..-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45677999999999999999999998742 12333321100 0001 12445
Q ss_pred HHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 206 IRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 206 ~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
++.+.+.+.. +...|++||+++.|.... .+.++..+++. +.++.+|
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a-----------~naLLk~LEep-------------------~~~~~~I 147 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQA-----------ANSLLKVLEEP-------------------PPQVVFL 147 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHHH-----------HHHHHHHHHhC-------------------cCCCEEE
Confidence 6666666543 334699999998886432 34577777753 1235677
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.+|+.++.+.+.+++ |+ ..+.|++|+.++..+.+..
T Consensus 148 lvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 148 LVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 788888999999999 88 6799999999988777754
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=94.40 Aligned_cols=123 Identities=23% Similarity=0.356 Sum_probs=73.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccc----ccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSG----ASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g----~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+.+++|+|+||||||+||.++++.+ +.+++.++..++...+.. ........+++... ...+|+|||+..-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 678889998876554321 11112223343332 33599999994321
Q ss_pred hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-CC----CCccccCCCCc---ce
Q 045279 231 SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-DA----VDPALRRPGRF---DR 302 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-~~----ld~al~r~~Rf---~~ 302 (702)
. .++. ...|...++.... .+ ..+|.|||.+ .. ++.++.+ |+ ..
T Consensus 192 ~------t~~~---~~~l~~iin~r~~-----------------~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 192 D------TEWA---REKVYNIIDSRYR-----------------KG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred C------CHHH---HHHHHHHHHHHHH-----------------CC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 1 1222 2334444443321 11 3467777763 33 4667776 74 34
Q ss_pred EEEeCCCCH
Q 045279 303 EIVLGVPDE 311 (702)
Q Consensus 303 ~i~~~~p~~ 311 (702)
.|.+..++.
T Consensus 243 ~v~~~g~d~ 251 (268)
T PRK08116 243 PVENEGKSY 251 (268)
T ss_pred EEEeeCcCh
Confidence 566666664
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=84.70 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 287 PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 287 ~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
|..++-.|+. |+ -+|...+++.++...||+..+....+....+ +..+......-+.+.-..|+..|...+.+|
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4467788888 88 6788899999999999999988877665544 344455445555666666666665555554
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=94.04 Aligned_cols=164 Identities=21% Similarity=0.321 Sum_probs=105.3
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhh
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVV 195 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~ 195 (702)
....|+.|+|.....+.+.+.... -.....++||.|++||||..+|++.-... ..+|+.+||+.+.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 444688888888887777665522 12234569999999999999999875443 6899999999887
Q ss_pred ccc-----cccc--HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 196 SGV-----SGAS--EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 196 ~~~-----~g~~--~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
... .|.. ...-.++|+.|.++ .+|+|||-.|.+ ++...|+..+.+-. |-..|.
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-----------~lQaKLLRFL~DGt-FRRVGe----- 327 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-----------RLQAKLLRFLNDGT-FRRVGE----- 327 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-----------HHHHHHHHHhcCCc-eeecCC-----
Confidence 652 2222 23347899998666 999999966654 34445777665311 001111
Q ss_pred CCCCCCCCeEEEEEecCCC--CCCCccccCCC---CcceEEEeCCCCHHHHHH
Q 045279 269 DASDSKPGYVLVIGATNRP--DAVDPALRRPG---RFDREIVLGVPDENARVQ 316 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~--~~ld~al~r~~---Rf~~~i~~~~p~~~er~~ 316 (702)
.....-+|+||+||..+ +.+...--|.+ |+ .++.+..|...+|.+
T Consensus 328 --e~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~ 377 (511)
T COG3283 328 --DHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQ 377 (511)
T ss_pred --cceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcc
Confidence 11123469999999663 23333332222 55 667888888877655
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-07 Score=92.41 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=105.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc---------cCcCchHHHHHHHHHHHHhCCCeEEEEeC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN---------KYVGESELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---------~~~g~~~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
...+|+.|.+||||-.+|++..... ..||+.++|+.+-. .-.|. .....+|+.| ..+.+|+||
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~--~gk~GffE~A---ngGTVlLDe 301 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGD--EGKKGFFEQA---NGGTVLLDE 301 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCC--CCccchhhhc---cCCeEEeeh
Confidence 3568999999999999999887655 67999999976543 23332 2334788888 558999999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC--Cc-----cCccccCCCccceEEEc
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP--DV-----MDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~--~~-----ld~a~~r~gRf~~~i~~ 594 (702)
|..+. .+++..||+.+.+-. -.-+|-|||||..+ +. +...+.- |++ ++.+
T Consensus 302 IgEmS-----------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl 367 (511)
T COG3283 302 IGEMS-----------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTL 367 (511)
T ss_pred hhhcC-----------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeee
Confidence 99998 889999999886521 22358999999654 22 3333333 553 5556
Q ss_pred CCCCHHHHH----HHHH----HHhccCCCCCC-CCHHHHhhhhcCCCCCH--HHHHHHHHHHHHH
Q 045279 595 PLPTPDERG----LILE----ALARKKPIDDS-VDLHTIAQSKFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 595 ~~p~~~~r~----~il~----~~~~~~~~~~~-~~~~~la~~~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
..|...+|. -+.+ .+..+.+.... .+.+.+. .-...+|.| ++|.|++-+|+..
T Consensus 368 ~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~-~L~~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 368 NLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT-VLTRYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred cCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH-HHHHcCCCccHHHHHHHHHHHHHH
Confidence 666555543 2222 23333333221 1111111 111236766 8888888887744
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=104.58 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=115.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+..++|.......+.+.+.. ......+++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~-----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK-----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHH-----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 455688877777776665532 22345679999999999999999997654 5789999998874321
Q ss_pred -----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 199 -----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 199 -----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
.| .... ..+.|..+ ...+||||||+.|....+ ..|+..++.... ...++.
T Consensus 210 ~~~~lfg~~~~~~~~~~~~-~~g~~~~a---~~gtl~ld~i~~l~~~~q-----------~~L~~~l~~~~~-~~~~~~- 272 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTL-RQGLFERA---NEGTLLLDEIGEMPLVLQ-----------AKLLRILQEREF-ERIGGH- 272 (457)
T ss_pred HHHHhcCCCCCCCCCCCCC-CCCceEEC---CCCEEEEechhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC-
Confidence 11 1000 01233333 235999999999885432 346666654211 111111
Q ss_pred CCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc-------
Q 045279 266 SKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV------- 327 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~------- 327 (702)
...+.++++|+||+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++.....
T Consensus 273 ------~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 273 ------QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred ------ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 11234589999998631 34444444 55 357788888877755 33333332211
Q ss_pred CCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 328 EGSF-DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.... .+..+....=-.+.++|++++..++..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 0111 123333333233778888888877643
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-07 Score=89.88 Aligned_cols=70 Identities=30% Similarity=0.480 Sum_probs=50.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc---HHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS---EENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~---~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
.+++|+|+||||||+|+.+||+.+ +..++.++..++........ ......+++... ...+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 589999999999999999999988 67888888888765432221 111223444432 46799999997653
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=81.82 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=55.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh--------CCeEEEEeccccccc--------------CcC-ch-HHHHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA--------GANFIHIKGPELLNK--------------YVG-ES-ELAVRTLFSRA 518 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~--------~~~~~~i~~~~l~~~--------------~~g-~~-~~~~~~~f~~a 518 (702)
...++++||||+|||++++.++..+ ..+++.++++...+. ... .+ ......+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 677888876543311 111 12 22333444444
Q ss_pred HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
......+|+|||+|.+. + ...++.+...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh
Confidence 55444699999999984 1 677777766665
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=95.08 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
...+++|+||||||||+||.+++.++ +..++.++..+++..+... ........+... ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 34679999999999999999999765 6778888888877653211 111223344433 25679999999876632
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
......+.+++....+ .. -+|.|||.+
T Consensus 183 ------~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 183 ------QAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred ------HHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 1223444455543322 11 366688875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=101.87 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||++.|++.+
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999875
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=95.05 Aligned_cols=78 Identities=23% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--------------------------CcC--ch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--------------------------YVG--ES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------------~~g--~~ 507 (702)
|++.+..++++||||+|||+++..++... +.+++.+...+-... +.. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 67777889999999999999998877543 556655543321100 000 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+..+..+.+.+....+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233344445556789999999888763
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-07 Score=85.58 Aligned_cols=108 Identities=25% Similarity=0.406 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
....+++|+|++||||+++|+++....+ .+|+.+++..+. ..+++.+ .++.|||+|+|.+.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence 4456799999999999999999998764 356666665532 3455555 66899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-C-C-----ccCccccCCCccc-eEEEcCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-P-D-----VMDRAVLRPGRFG-KLLYVPL 596 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~-~-----~ld~a~~r~gRf~-~~i~~~~ 596 (702)
...+..|+..+.... ..++-+|++|.. + + .+++.+.. ||. ..|.+|+
T Consensus 83 ---------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 83 ---------PEAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp ---------HHHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred ---------HHHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 777888887777543 344455555543 2 2 35555554 554 3445543
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.3e-07 Score=102.67 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh-----
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV----- 194 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l----- 194 (702)
..|+|+++++..|.+++...... ++- .+...++|.||.|+|||-+|+++|..+ ...++.++++++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 46799999999999888543221 111 356779999999999999999999997 457899999852
Q ss_pred ----hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 195 ----VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 195 ----~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
..+|.|..+. ..+.+..++...+|+||||||..-+ .+++.|+..+|+....-..|-.-
T Consensus 636 ligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~GrltDs~Gr~V----- 697 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLTDSHGREV----- 697 (898)
T ss_pred ccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccccCCCcEe-----
Confidence 2235665544 4566666677779999999976543 35556777777543211111111
Q ss_pred CCCCCCeEEEEEecCCC
Q 045279 271 SDSKPGYVLVIGATNRP 287 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~ 287 (702)
.-++++||.|+|.-
T Consensus 698 ---d~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 698 ---DFKNAIFIMTSNVG 711 (898)
T ss_pred ---eccceEEEEecccc
Confidence 23569999999873
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-06 Score=91.37 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=26.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.+++.+-|+||.|+||||+.++|+...
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 356678889999999999999999998763
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.8e-07 Score=92.24 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=50.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
...+++|+||||||||.|+.++++.+ +..+++++..++........ .......+... ..+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 45679999999999999999998765 67788888888766532111 11222334333 2456999999977654
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-07 Score=101.29 Aligned_cols=170 Identities=24% Similarity=0.390 Sum_probs=99.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchHH-------HHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESEL-------AVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~~-------~~~~~f~~a~~~~~~vl 526 (702)
...+++++|++||||+++|+++.... +.+|+.++|..+.... .|.... .....|.. ...++|
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEE
Confidence 34678999999999999999998764 5799999998763221 110000 00012222 346899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCC-------ccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPD-------VMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~ 590 (702)
||||++.+. ..++..|+..++... ...++.||++||..- .+.+.+.. |+.
T Consensus 242 ~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~- 307 (457)
T PRK11361 242 LLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN- 307 (457)
T ss_pred EEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 999999999 778888888876421 113478888988641 23333333 442
Q ss_pred EEEcCCCCHHHHH----HHHHHHhccCCCC---CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 LLYVPLPTPDERG----LILEALARKKPID---DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ~i~~~~p~~~~r~----~il~~~~~~~~~~---~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+|. .++..++.+.... ....+..-+...+ ...|.| ++|+++++.|+..
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 3445555555443 3445554432111 0112222222122 235655 8999999988753
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.5e-07 Score=89.69 Aligned_cols=96 Identities=21% Similarity=0.321 Sum_probs=60.9
Q ss_pred CCccccc----CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 121 PRFQDLG----GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~----G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+|+++. |...++..+...+.... ....+++|+||||||||+||.+|++.+ +..++.++..+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~-----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELM-----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHH-----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 3677764 44445555554443221 123689999999999999999999987 56788888887
Q ss_pred hhcccccccH--HHHHHHHHHHHhhCCceEEechhhHh
Q 045279 194 VVSGVSGASE--ENIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 194 l~~~~~g~~~--~~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
+......... .....++... ....+|+|||+...
T Consensus 140 l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 140 VMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 7654321110 0112333333 34569999999554
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=94.36 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+.+++|+||||||||++|.+++.++ +..+..++.++++...... ........+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 35689999999999999999998875 5666666666655432110 001112222222 35689999999987532
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.....++.+++..... .. -+|+|||.+
T Consensus 175 ------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 1223344455443321 11 266688875
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-07 Score=103.13 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=111.6
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccc--
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVS-- 199 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~-- 199 (702)
.++|.......+.+.+.. -.....+++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~-----------~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~ 203 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARM-----------VAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203 (444)
T ss_pred cccccCHHHHHHHHHHHh-----------hccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH
Confidence 466666555555544422 12334579999999999999999997764 47999999987643211
Q ss_pred ---ccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 200 ---GAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 200 ---g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
|.. .....++|+.+ ...+||||||+.|....+ ..|+..++.... ...|+.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~-~~~g~~----- 263 (444)
T PRK15115 204 ELFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPLQ-----------VKLLRVLQERKV-RPLGSN----- 263 (444)
T ss_pred HhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHHH-----------HHHHHHHhhCCE-EeCCCC-----
Confidence 000 00011123333 235999999999885533 346666654221 111111
Q ss_pred CCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---C-c
Q 045279 270 ASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E---G-S 330 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~---~-~ 330 (702)
...+.++++|++|+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++..... . . .
T Consensus 264 --~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~ 338 (444)
T PRK15115 264 --RDIDIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFST 338 (444)
T ss_pred --ceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 11233589999998621 23333333 45 457888888888754 33444433211 0 1 1
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
..+..+....=-.+.++|++++..++..
T Consensus 339 ~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 339 DAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 1234444444234778888888877653
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-07 Score=105.58 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=95.9
Q ss_pred cccCCcccchhhhHHHHHHHhhCh-H---H----HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------CeEEE
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFP-E---E----YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIH 493 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~-~---~----~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~ 493 (702)
..|.|.+.+|+.+.-.+....... . . +....++...++||+|+||||||.+|++++.... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 457788888876633221111000 0 0 0001234456899999999999999999998653 23333
Q ss_pred EecccccccCcCc-hHH-HH-HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------
Q 045279 494 IKGPELLNKYVGE-SEL-AV-RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------- 561 (702)
Q Consensus 494 i~~~~l~~~~~g~-~~~-~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------- 561 (702)
+.+..... +.+. +.. .+ ...+. ....++++|||++.+. ...+..|+..|+...
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 33322211 0000 000 00 00111 2345899999999998 777788888886532
Q ss_pred --CCCcEEEEEecCCCC-------------ccCccccCCCccceEEE-cCCCCHHHHHHHHHHH
Q 045279 562 --KRKGVFVIGATNRPD-------------VMDRAVLRPGRFGKLLY-VPLPTPDERGLILEAL 609 (702)
Q Consensus 562 --~~~~~~vI~atn~~~-------------~ld~a~~r~gRf~~~i~-~~~p~~~~r~~il~~~ 609 (702)
-..++.||+|+|... .|.+++++ |||.++. .+.|+.+.=..|..+.
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHH
Confidence 235789999999741 57788888 9997754 5566665444444443
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=99.22 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=42.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++..|++++|++++++.|...+.. +.+++|+||||||||++++++++.++
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3455899999999999988865621 24799999999999999999998764
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=87.15 Aligned_cols=179 Identities=26% Similarity=0.313 Sum_probs=92.9
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec-hh--------
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISA-TE-------- 193 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~-~~-------- 193 (702)
++|.+..++.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.. ..++++. ..
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 46888888888876622 24577999999999999999999998832 1111111 00
Q ss_pred h-------------hc-cc------------ccccHHHHHHHHHHHHhh-CCceEEechhhHhh-hcchhhhHHHHHHHH
Q 045279 194 V-------------VS-GV------------SGASEENIRDLFSKAYRT-APSIVFIDEIDAIA-SKRENLQREMERRIV 245 (702)
Q Consensus 194 l-------------~~-~~------------~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~-~~~~~~~~~~~~~~~ 245 (702)
+ .. .. .......+..++...... ...||+|||++.+. ..... ...+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~------~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED------KDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT------HHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch------HHHH
Confidence 0 00 00 011234455566665543 34799999999998 22211 1233
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC------CCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 246 TQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP------DAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 246 ~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~------~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
..|...++.... ..++.+|.++... ..-...+.. |+.. +.+++.+.++..+++.
T Consensus 142 ~~l~~~~~~~~~-----------------~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~ 201 (234)
T PF01637_consen 142 KSLRSLLDSLLS-----------------QQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLK 201 (234)
T ss_dssp HHHHHHHHH---------------------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHH
T ss_pred HHHHHHHhhccc-----------------cCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHH
Confidence 444444443111 1123333333321 122333444 7855 9999999999999999
Q ss_pred HhhcCcccC---CcccHHHHHhhCCCCC
Q 045279 320 VLTRNLRVE---GSFDLVKIARSTPGFV 344 (702)
Q Consensus 320 ~~~~~~~~~---~~~~~~~la~~t~g~~ 344 (702)
..+... .. ...++..+...+.|..
T Consensus 202 ~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 202 ELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 877665 21 3345666777777643
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-07 Score=91.03 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=61.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCch--HHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGES--ELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~--~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+++|+||||||||+||.++|+.+ +..++.++.++++....... ......++... ....+|+|||++.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 3689999999999999999999987 66778888877765421100 00111233333 35679999999765421
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.+..+++..++..-- .. ..-+|.|||..
T Consensus 179 ------~~~~~~l~~ii~~R~---~~-~~ptiitSNl~ 206 (248)
T PRK12377 179 ------KNEQVVLNQIIDRRT---AS-MRSVGMLTNLN 206 (248)
T ss_pred ------HHHHHHHHHHHHHHH---hc-CCCEEEEcCCC
Confidence 223444555544322 11 12245679864
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-07 Score=92.82 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=51.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcC-----chHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVG-----ESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
.+.+++|+||||||||+||-++++++ |..++.++.++++...-. ..+..+... . ....||+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccC
Confidence 67899999999999999999999977 788889998888765221 122222111 1 2457999999987
Q ss_pred hh
Q 045279 534 LT 535 (702)
Q Consensus 534 l~ 535 (702)
..
T Consensus 179 ~~ 180 (254)
T COG1484 179 EP 180 (254)
T ss_pred cc
Confidence 65
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=90.17 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=65.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc---hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE---SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+++|+|+||||||+++.++|..+ +..++.++.+++...+... .......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 7788888888877543221 1112233444432 567999999987642
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
..+...++.+++..-- ..+.-+|.+||..
T Consensus 177 -----s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -----SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -----CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2333456666654321 1122466688864
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-06 Score=90.13 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=93.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc-------------ccccCcCchHHHHHHHHHHHH------------
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE-------------LLNKYVGESELAVRTLFSRAR------------ 519 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~-------------l~~~~~g~~~~~~~~~f~~a~------------ 519 (702)
-+||+||+||||||+++.|+.++|..+++...+- +...++...-........++.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 4688999999999999999999999888765221 111111111111111222221
Q ss_pred hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--CCccCccccCC------CccceE
Q 045279 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR--PDVMDRAVLRP------GRFGKL 591 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~--~~~ld~a~~r~------gRf~~~ 591 (702)
...+.+||+||+=..+... ..+.+...|.++-...... +||+.|+. ++..++..+.| -|+. .
T Consensus 192 ~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~P--lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~ 261 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCP--LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-N 261 (634)
T ss_pred ccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCc--EEEEEeccccCCCcchhhhchhhhhhccCcc-e
Confidence 1356699999987666331 1344444444443333333 34444432 23222222211 1564 6
Q ss_pred EEcCCCCHHHHHHHHHHHhccCCCC-------CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 592 LYVPLPTPDERGLILEALARKKPID-------DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 592 i~~~~p~~~~r~~il~~~~~~~~~~-------~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
|.|.+-...-..+.+...+...... ....++.++ .-+|||||.+|+...+.+
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~------~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELIC------QGSGGDIRSAINSLQLSS 320 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHH------HhcCccHHHHHhHhhhhc
Confidence 7777777766666666665543222 123344444 237799999999887765
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-07 Score=93.60 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=50.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+.+++|+||||||||+++.+++..+ +..+..++..++...+... ....+...+.... ..+.+|+|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCC
Confidence 345689999999999999999998764 6677777777766433211 1112334454432 367899999998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=86.09 Aligned_cols=85 Identities=34% Similarity=0.509 Sum_probs=51.9
Q ss_pred ccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 501 NKYVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 501 ~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
++|..+ +....|..+.+|....|.||++|| +|.+. +..+++.|..+.. ..+..|++.|+.
T Consensus 125 ~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT-----------R~~lq~~l~~lw~---~~~~TvllVTHd 190 (248)
T COG1116 125 DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-----------REELQDELLRLWE---ETRKTVLLVTHD 190 (248)
T ss_pred hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH-----------HHHHHHHHHHHHH---hhCCEEEEEeCC
Confidence 345544 334457778888889999999999 66666 4445554444432 223456667876
Q ss_pred CC---ccCcccc----CCCccceEEEcCCCCH
Q 045279 575 PD---VMDRAVL----RPGRFGKLLYVPLPTP 599 (702)
Q Consensus 575 ~~---~ld~a~~----r~gRf~~~i~~~~p~~ 599 (702)
.+ .+-..+. +|+|+-..+.+++|.+
T Consensus 191 i~EAv~LsdRivvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 191 VDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred HHHHHhhhCEEEEecCCCcceeeEEecCCCCC
Confidence 43 1111111 5677777777777754
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-07 Score=100.41 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCeEEEechhhhcc-------
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET--GVPFYKISATEVVSG------- 197 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~~i~~~~l~~~------- 197 (702)
++.+...+.+...+.. -.....++++.|+|||||-.+++++-+.. ..+|+.+||..+...
T Consensus 316 ~~~d~s~a~l~rk~~r-----------v~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELF 384 (606)
T COG3284 316 PLLDPSRATLLRKAER-----------VAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELF 384 (606)
T ss_pred cccCHHHHHHHHHHHH-----------HhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHh
Confidence 4556666665554422 12345679999999999999999995554 579999999987654
Q ss_pred ------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCC-CCCCCCCCC
Q 045279 198 ------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQP-GDQKSKSDA 270 (702)
Q Consensus 198 ------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~~~~~~ 270 (702)
+.|...+..+..+++|..+ .||+|||..|+-. +...||..+.+... .+ |+..
T Consensus 385 Gy~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~-----------~Qs~LLrVl~e~~v--~p~g~~~----- 443 (606)
T COG3284 385 GYVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLA-----------LQSRLLRVLQEGVV--TPLGGTR----- 443 (606)
T ss_pred ccCccccccchhccccccceecCCC---ccHHHHhhhchHH-----------HHHHHHHHHhhCce--eccCCcc-----
Confidence 2333445556666776555 9999999777643 33457777775332 22 2221
Q ss_pred CCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH---HHHHhhcCcc---cCCccc--HHH
Q 045279 271 SDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ---ILSVLTRNLR---VEGSFD--LVK 335 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~---Il~~~~~~~~---~~~~~~--~~~ 335 (702)
.+-+|.||+||+..- .+-..|.- |+ ..+.+..|+..+|.. .+..++++.. ...+.+ ...
T Consensus 444 ---~~vdirvi~ath~dl~~lv~~g~fredLyy--rL-~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l 517 (606)
T COG3284 444 ---IKVDIRVIAATHRDLAQLVEQGRFREDLYY--RL-NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARL 517 (606)
T ss_pred ---eeEEEEEEeccCcCHHHHHHcCCchHHHHH--Hh-cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHH
Confidence 233599999998732 12222222 44 446777887766654 3333333322 111222 334
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++...+| +.++|.++++.++.++
T Consensus 518 ~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 518 LAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHcC
Confidence 5666777 7788888888776543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=98.21 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.7
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456778889999999999999999999875
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=79.75 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=68.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE 541 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 541 (702)
..++++||.|||||++++.++..+. .+++.++..+.......... +...+.+.....+.+|||||++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4578999999999999999998876 77788887665432111100 22223222222568999999998741
Q ss_pred CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc--cccCCCccceEEEcCCCCHHH
Q 045279 542 GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR--AVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 542 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~--a~~r~gRf~~~i~~~~p~~~~ 601 (702)
....+..+. +. ..++-||+|+.....+.. +-.-+||+. .+.+.+.+..|
T Consensus 76 ----~~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ----WEDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ----HHHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 123333333 21 123444444443322211 112256875 66777777655
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-07 Score=100.96 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=29.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+-+.++.-+-|+|++|||||+++++|-+.+....
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~ 63 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC
Confidence 3567888899999999999999999988876553
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=96.65 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=98.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHH---------------HHhCCCe
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSR---------------ARTCSPC 524 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------------a~~~~~~ 524 (702)
...++++|++|||||++|+++.... +.+|+.++|..+..... -..+|.. ......+
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 4568999999999999999998875 57999999987632211 1112211 1123458
Q ss_pred EEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCcc
Q 045279 525 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRF 588 (702)
Q Consensus 525 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf 588 (702)
+|||||++.|. ...+..|+..++... ...++.+|++|+.. ..+.+.+.. |+
T Consensus 231 tl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l 297 (444)
T PRK15115 231 TLFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY--RL 297 (444)
T ss_pred EEEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999999999 778888888876422 11257888888853 022222222 33
Q ss_pred ceEEEcCCCCHHHHH----HHHHHHhccCCC--C-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 589 GKLLYVPLPTPDERG----LILEALARKKPI--D-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 589 ~~~i~~~~p~~~~r~----~il~~~~~~~~~--~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
. .+.+..|...+|. .+++.++.+... . ....+..-|...+ ...|.| ++|+++++.|+..
T Consensus 298 ~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 298 N-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred c-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2 3445555555553 345555543211 0 0011211111121 235555 8999999988753
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.7e-07 Score=93.09 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=49.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc---hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE---SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+++|+||||||||+||.++|+++ +..++.++..+++..+... ........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999987 7788888888876643110 0011111233332 45799999998764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-06 Score=96.10 Aligned_cols=340 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec----------------------------------------
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA---------------------------------------- 191 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~---------------------------------------- 191 (702)
.+.+.++..+.|+||+|+|||||++.|++.+...--.+..
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 100 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERD 100 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHH
Q ss_pred -------------------------------------------------hhhhcccccccHHHHHHHHHHHHhhCCceEE
Q 045279 192 -------------------------------------------------TEVVSGVSGASEENIRDLFSKAYRTAPSIVF 222 (702)
Q Consensus 192 -------------------------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~ 222 (702)
...+..+.|...+ +-.+..+....|.+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q--rv~lA~aL~~~p~lLl 178 (530)
T PRK15064 101 RIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL--RVLLAQALFSNPDILL 178 (530)
T ss_pred HHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH--HHHHHHHHhcCCCEEE
Q ss_pred echhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcce
Q 045279 223 IDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302 (702)
Q Consensus 223 iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~ 302 (702)
+||. .+..+......+..++.... ..||.+|...+.+..-.-+--.+..
T Consensus 179 LDEP-------t~~LD~~~~~~l~~~l~~~~------------------------~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 179 LDEP-------TNNLDINTIRWLEDVLNERN------------------------STMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred EcCC-------CcccCHHHHHHHHHHHHhCC------------------------CeEEEEeCCHHHHHhhcceEEEEeC
Q ss_pred EEE-eCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccC
Q 045279 303 EIV-LGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHS 381 (702)
Q Consensus 303 ~i~-~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~ 381 (702)
--. +...+.++....-........-.........+ .+...+..+...+.........
T Consensus 228 g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~------------- 285 (530)
T PRK15064 228 GELRVYPGNYDEYMTAATQARERLLADNAKKKAQIA---------ELQSFVSRFSANASKAKQATSR------------- 285 (530)
T ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhccchhhHHHHHH-------------
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~ 461 (702)
.+.+...............+...+..-.......-.+.. +...+.....+..+.+.
T Consensus 286 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~l~~is~~ 341 (530)
T PRK15064 286 -----------------------AKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVEN-LTKGFDNGPLFKNLNLL 341 (530)
T ss_pred -----------------------HHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEe-eEEeeCCceeecCcEEE
Q ss_pred CCcc--eEEEcCCCCChhHHHHHHHHHh--CCeEEEEecccccccCcCchHHHH--------------------------
Q 045279 462 LETG--FLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELLNKYVGESELAV-------------------------- 511 (702)
Q Consensus 462 ~~~~--~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~~~~~g~~~~~~-------------------------- 511 (702)
...| +.|.||+|+|||||+++++... ...-+.+....-++.........+
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 421 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGT 421 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHH
Q ss_pred ------------------------HHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 512 ------------------------RTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 512 ------------------------~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
|..+.+|....|.||++|| +|... .+.+..++..+
T Consensus 422 l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~-----------~~~l~~~l~~~------ 484 (530)
T PRK15064 422 LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-----------IESLNMALEKY------ 484 (530)
T ss_pred HHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH-----------HHHHHHHHHHC------
Q ss_pred CcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 564 KGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 564 ~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
...||++|+.++.+.. -+|+++.+
T Consensus 485 -~~tvi~vsHd~~~~~~------~~d~i~~l 508 (530)
T PRK15064 485 -EGTLIFVSHDREFVSS------LATRIIEI 508 (530)
T ss_pred -CCEEEEEeCCHHHHHH------hCCEEEEE
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-07 Score=85.88 Aligned_cols=70 Identities=30% Similarity=0.587 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEID 227 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid 227 (702)
..+.|++|+||||||||.||.++++++ +.++..++..++........ .......+.... ...+|+|||+-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 346789999999999999999998876 78888999998876532111 111223344433 34699999994
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.4e-07 Score=91.38 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=48.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
.+.+++|+||||||||++|.+|+..+ +..+..++..++........ ...+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 45789999999999999999998775 56666677776654432110 01112222222 3457999999987653
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=90.68 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=48.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccc---cHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGA---SEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
..+++|+||||||||+|+.+||+++ +..+++++..++....... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999987 6788889888876543211 0111111233332 34699999996543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-07 Score=93.48 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=64.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
...|++|+||+|||||+|+.++|+++ +..+..+..++++..+... ....+...+.... ...||+|||+.....
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 45789999999999999999999987 6777778877776543211 0111233343332 457999999976541
Q ss_pred cCCCCchHHHHHHHHHHHh-hhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIE-LDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~vI~atn~~ 575 (702)
..+...+++..++.. +. .+.-.|.|||.+
T Consensus 232 ----s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 ----SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred ----cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 112223455555542 22 123466688864
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-07 Score=86.93 Aligned_cols=73 Identities=33% Similarity=0.558 Sum_probs=47.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+.|++|+||||||||++|.+++.++ +..+..++.++++...... ........+.... ...+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee
Confidence 346789999999999999999999866 7888888888887542211 0111223344333 45799999987543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=87.09 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=85.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe----------------EEEEecccccccCcCchHHHHHHHHHHHH----h
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN----------------FIHIKGPELLNKYVGESELAVRTLFSRAR----T 520 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~----------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~ 520 (702)
+.+..+||+||.|+||+.+|..+|..+-+. +..+.+.. .+.. -+-..+|.+.+.+. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 456678999999999999999999876321 11121100 0000 12344566655543 2
Q ss_pred CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCC
Q 045279 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 521 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
....|++||++|.+. ....|.||..|+. +..++++|..|+.++.+-|.+++ |+- .+.|+++.
T Consensus 94 ~~~kv~ii~~ad~mt-----------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRMT-----------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPMEE 155 (290)
T ss_pred CCceEEEEechhhcC-----------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccchh
Confidence 455799999999999 8999999999996 45677888889999999999988 884 66777553
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=89.12 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=51.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+..+.+++|+||||||||+|+.+|+..+ +..+..+++.++...+.... ...+..++... ...+.+++|||++.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3456789999999999999999997664 66777788777654432111 11233445443 2456799999997654
Q ss_pred h
Q 045279 231 S 231 (702)
Q Consensus 231 ~ 231 (702)
.
T Consensus 178 ~ 178 (259)
T PRK09183 178 F 178 (259)
T ss_pred C
Confidence 3
|
|
| >KOG3595 consensus Dyneins, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=100.45 Aligned_cols=340 Identities=17% Similarity=0.260 Sum_probs=171.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechhhhcccccccHHHHHHHHHHHH-h----------hCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG-VPFYKISATEVVSGVSGASEENIRDLFSKAY-R----------TAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~-~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~----------~~p~il~iDEi 226 (702)
..++++||+|+|||.++........ ..++.++.+...++ .....++..-. . +...++|+||+
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~------~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddi 201 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSS------ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDI 201 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccH------HHHHHHHHHHHHHhcccCCCCCCCceeEEEEecc
Confidence 6799999999999998887765543 23233444432221 11112111111 0 11138999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcce
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDR 302 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~ 302 (702)
+.-... ..+.+....++.++-+...+++... ... ..--+|++++++|++. .+++.+.| .| .
T Consensus 202 nmp~~~------~yg~q~~~~~lrq~~e~~g~~~~~~-~~~-----~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f-~ 266 (1395)
T KOG3595|consen 202 NMPALD------KYGDQPPIELLRQMLEHGGFYDRKK-SEW-----VEIENVQLVGAMNPPGGGRNDITERFLR--HF-L 266 (1395)
T ss_pred CCchhh------hcCCccHHHHHHHHHHhceeecccc-cce-----eEEeeeEEEeecCCCCCccCcccHHHHH--He-e
Confidence 754322 2223334456666666555555443 211 1234589999999754 57788887 77 7
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCcccCCcc---cHHHHH------------hhC-------CCCCHHHHHHHHHHHHHH--
Q 045279 303 EIVLGVPDENARVQILSVLTRNLRVEGSF---DLVKIA------------RST-------PGFVGADLAALANKAGNL-- 358 (702)
Q Consensus 303 ~i~~~~p~~~er~~Il~~~~~~~~~~~~~---~~~~la------------~~t-------~g~~~~dl~~l~~~a~~~-- 358 (702)
.+.+..|+.+..-.|+..++..+...... ....+. ... --|+.+|+..++......
T Consensus 267 ~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~ 346 (1395)
T KOG3595|consen 267 IVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVS 346 (1395)
T ss_pred eEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCc
Confidence 78999999999999999887766320000 011111 111 114556665544322110
Q ss_pred -------HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCcccccc
Q 045279 359 -------AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDV 431 (702)
Q Consensus 359 -------a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i 431 (702)
...+.+.....+...+.+.+....+|.. +.+. ......+.... ...|..... ........|..+
T Consensus 347 ~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~-----~~~~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~y~~~ 417 (1395)
T KOG3595|consen 347 EALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFD-----KKLQ--EVLLKLFEADS-LQMPLLYGD-FRSESHKIYEEV 417 (1395)
T ss_pred HhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHH-----HHHH--HHHHHHhhhhh-hcCCceeee-cccccccccCch
Confidence 0111111111111111111111111100 0000 00001111110 000100000 000000334555
Q ss_pred CCcccchhhhHHHHH----------------HHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 432 GGLDYLRHEFDRYIV----------------RRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 432 ~g~~~~k~~l~~~i~----------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
...+.+...+...+. ....|.....++-..+..+.++.|-.|+||+++.+..+...+..++.+.
T Consensus 418 ~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~ 497 (1395)
T KOG3595|consen 418 LSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIE 497 (1395)
T ss_pred HhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeee
Confidence 554444444433322 2234555556666778899999999999999999999999999888887
Q ss_pred cccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeC
Q 045279 496 GPELLNKYVGESELAVRTLFSRARTCS-PCILFFDE 530 (702)
Q Consensus 496 ~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDE 530 (702)
.....+ .......++.++..+.... +.++.++|
T Consensus 498 ~~~~y~--~~~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 498 ITRSYN--IEDFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred ccccCc--HHHHHHHHHHHHHHhccCCCceEEeech
Confidence 654322 1223444555555554333 33455666
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-06 Score=85.35 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
...+++|+||||||||+|+.++|+++ +..++.+...+++...... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45789999999999999999999976 5667777766655432111 11111222222 3457999999954
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-06 Score=76.07 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--------CCCeEEEechhhhcc--------------ccc-ccHHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET--------GVPFYKISATEVVSG--------------VSG-ASEENIRDLFSKA 213 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l--------~~~~~~i~~~~l~~~--------------~~g-~~~~~~~~~f~~a 213 (702)
....++++||||+|||++++.++..+ ..+++.+++...... ... .....+...+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35679999999999999999999987 677788877764411 111 2223333334443
Q ss_pred HhhCC-ceEEechhhHhh
Q 045279 214 YRTAP-SIVFIDEIDAIA 230 (702)
Q Consensus 214 ~~~~p-~il~iDEid~l~ 230 (702)
..... .+|+|||+|.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 34333 499999999875
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=97.56 Aligned_cols=200 Identities=19% Similarity=0.209 Sum_probs=112.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV- 198 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~- 198 (702)
+..++|......++.+.+... .....++++.|++||||+++|+++.... +.+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 456888888777777665331 2334579999999999999999997764 4689999998764321
Q ss_pred ----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 ----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 ----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.| .... ..+.|..+ .+++||||||+.|....+ ..|+..++.... ...++.
T Consensus 202 ~~~lfg~~~~~~~~~~~~-~~g~~~~a---~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~-~~~~~~-- 263 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTR-RQGRFEQA---DGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEF-YRVGGR-- 263 (463)
T ss_pred HHHhcCCCCCCCCCcccC-CCCcEEEC---CCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcE-EECCCC--
Confidence 11 1000 01122222 345999999998875432 345555553211 001111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHH----HHHHHHhhcCcccC-------
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENAR----VQILSVLTRNLRVE------- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er----~~Il~~~~~~~~~~------- 328 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+| ..++..++......
T Consensus 264 -----~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 264 -----TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred -----ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--Hh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 11223588999987632 33444544 55 3355666665444 34444444332111
Q ss_pred C-cccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 G-SFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~-~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
. ...+..+....=-.+.++|++++..++..+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 0 111333333322236788999888877654
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=87.38 Aligned_cols=73 Identities=32% Similarity=0.517 Sum_probs=50.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHH-HHHHHHHHHHhhCCceEEechhhHhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEE-NIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
.+.+++|+||||||||.||.+|++++ |.++..++..+++......... ....-+... -....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 56889999999999999999999887 6788899998887663322221 111111221 1234599999995443
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.3e-06 Score=80.98 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 236 (702)
...+..++||+|||||..++.+|+.+|.+++.++|++-. ....+..+|.-+... .+++.+||++.+....-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~~~vLS~ 103 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLSEEVLSV 103 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHHHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-CchhhhhhhhhhhHHHHHH
Confidence 346678999999999999999999999999999998743 234556666555443 4699999998876432221
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDEN 312 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~ 312 (702)
..+. +..+...+......+.-. +.......++-+..|+|+ ...+|+.++. -| +.+.+..|+..
T Consensus 104 i~~~----i~~i~~al~~~~~~~~~~------g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 104 ISQQ----IQSIQDALRAKQKSFTLE------GQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp HHHH----HHHHHHHHHCTSSEEEET------TCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred HHHH----HHHHHHhhcccccccccC------CCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 1111 122222222111111000 000111122455567775 3478999988 66 77999999987
Q ss_pred HHHHHH
Q 045279 313 ARVQIL 318 (702)
Q Consensus 313 er~~Il 318 (702)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755554
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=88.16 Aligned_cols=70 Identities=27% Similarity=0.466 Sum_probs=49.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccH-HHHHHHHHHHHhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
...|++|+||+|||||+|+.+||+.+ +.++..++..++......... ..+...+.... ...+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 45789999999999999999999998 677888888776554322111 11233444432 345999999943
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=88.36 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=48.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+.+.+||+-..+-+++|..++...+. +..+..-+||+|||||||||+++.||++++..+.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 34889999888888888888854332 22334568999999999999999999999877654
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=95.93 Aligned_cols=189 Identities=13% Similarity=0.039 Sum_probs=114.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCch--HHHH--------HHHHHHHHhCCCeEEEEeCc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGES--ELAV--------RTLFSRARTCSPCILFFDEV 531 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~~~vl~iDEi 531 (702)
.|+++.|+.||||+++++.++..+.. +|+.+..+--....+|.. +..+ ..++..| ..+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 68999999999999999999998854 887776554444445532 1111 1122222 4589999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCC---CccCccccCCCccceEEEcCCC
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p 597 (702)
..+. ..+++.|+.-|+.- .-..++++|++-|.. ..|.++++- ||+..+.++.+
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 9998 89999999999852 122456777763322 347888888 99999999988
Q ss_pred CHHHHH-------HHHHHH--hccCCCCCCCCHHHHhhhhcCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 045279 598 TPDERG-------LILEAL--ARKKPIDDSVDLHTIAQSKFCENL-SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFT 667 (702)
Q Consensus 598 ~~~~r~-------~il~~~--~~~~~~~~~~~~~~la~~~~~~~~-sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 667 (702)
...+.. .|.... +.+..+ .+..++.++.....-|. |.+---.+++-|-..|.-+.. ..
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr-----------~~ 237 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR-----------TA 237 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC-----------CC
Confidence 765421 233222 221111 11222333311111233 434434444444433333322 27
Q ss_pred ccHHHHHHHHhhc
Q 045279 668 IKLTHFEQALSKI 680 (702)
Q Consensus 668 i~~~d~~~al~~~ 680 (702)
|+.+|+..|+.-+
T Consensus 238 V~~~dv~~Aa~lv 250 (584)
T PRK13406 238 VEEEDLALAARLV 250 (584)
T ss_pred CCHHHHHHHHHHH
Confidence 8999999987644
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=95.09 Aligned_cols=167 Identities=20% Similarity=0.313 Sum_probs=96.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHH---------------HHHhCCC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFS---------------RARTCSP 523 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~---------------~a~~~~~ 523 (702)
....++++|.+||||+++|+++.... +.+|+.++|+.+..... -..+|. ......+
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 45678999999999999999998765 57899999987532211 011111 1122357
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC---------CCcEEEEEecCCCCccCccccCCCccce----
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK---------RKGVFVIGATNRPDVMDRAVLRPGRFGK---- 590 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~vI~atn~~~~ld~a~~r~gRf~~---- 590 (702)
++|||||++.+. ...+..|+..++...- ..++.+|++|+..-. ....+|+|..
T Consensus 235 gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~ 300 (441)
T PRK10365 235 GTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYY 300 (441)
T ss_pred CEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHH
Confidence 899999999999 7778888887765321 124667878765321 1112333321
Q ss_pred ---EEEcCCCCHHH----HHHHHHHHhccCCC--C-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 ---LLYVPLPTPDE----RGLILEALARKKPI--D-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ---~i~~~~p~~~~----r~~il~~~~~~~~~--~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+ ...++..++.+... . ....+..-+...+ ...|.| ++|+++++.|+..
T Consensus 301 ~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 34444444444 34555666554211 0 0111222221122 235655 8888998887753
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-06 Score=86.13 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--------c-cc----ccHHHHHHHHHHHH----hhCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--------V-SG----ASEENIRDLFSKAY----RTAP 218 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--------~-~g----~~~~~~~~~f~~a~----~~~p 218 (702)
+-++.+||+||+|+||+++|.++|+.+-+.-..-.|..+..+ . .+ -.-..++.+.+.+. .+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 446789999999999999999999987432100011111000 0 01 12334455544443 2344
Q ss_pred ceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCC
Q 045279 219 SIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298 (702)
Q Consensus 219 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~ 298 (702)
.|++||++|.|.... .+.||+.+++ .|+++++|..|+.++.+.|.+++
T Consensus 97 kv~ii~~ad~mt~~A-----------aNaLLK~LEE-------------------Pp~~~~fiL~~~~~~~ll~TI~S-- 144 (290)
T PRK05917 97 KIYIIHEADRMTLDA-----------ISAFLKVLED-------------------PPQHGVIILTSAKPQRLPPTIRS-- 144 (290)
T ss_pred eEEEEechhhcCHHH-----------HHHHHHHhhc-------------------CCCCeEEEEEeCChhhCcHHHHh--
Confidence 699999999987543 4568998886 46779999999999999999999
Q ss_pred CcceEEEeCCC
Q 045279 299 RFDREIVLGVP 309 (702)
Q Consensus 299 Rf~~~i~~~~p 309 (702)
|+ ..+.|+++
T Consensus 145 Rc-q~~~~~~~ 154 (290)
T PRK05917 145 RS-LSIHIPME 154 (290)
T ss_pred cc-eEEEccch
Confidence 98 56777765
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-05 Score=90.13 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC------eEEEe---------------------------------
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANET--GVP------FYKIS--------------------------------- 190 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l--~~~------~~~i~--------------------------------- 190 (702)
.+.+.++..+.|+||+|+|||||.++|+... +.+ ++...
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~ 276 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQ 276 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred -------------------------------------------------------------chhhhcccccccHHHHHHH
Q 045279 191 -------------------------------------------------------------ATEVVSGVSGASEENIRDL 209 (702)
Q Consensus 191 -------------------------------------------------------------~~~l~~~~~g~~~~~~~~~ 209 (702)
....+..+.|.... +-.
T Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~--rv~ 354 (718)
T PLN03073 277 RELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM--RIA 354 (718)
T ss_pred HHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH--HHH
Q ss_pred HHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCC
Q 045279 210 FSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDA 289 (702)
Q Consensus 210 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ 289 (702)
+..+....|.+|++||. .+..+.....++..++..+. ..||.++...+.
T Consensus 355 LA~aL~~~p~lLlLDEP-------t~~LD~~~~~~l~~~L~~~~------------------------~tviivsHd~~~ 403 (718)
T PLN03073 355 LARALFIEPDLLLLDEP-------TNHLDLHAVLWLETYLLKWP------------------------KTFIVVSHAREF 403 (718)
T ss_pred HHHHHhcCCCEEEEECC-------CCCCCHHHHHHHHHHHHHcC------------------------CEEEEEECCHHH
Q ss_pred CCc---cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 290 VDP---ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 290 ld~---al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
++. .+.- -=+..+.....+......--................... .+...+......+.+....+
T Consensus 404 l~~~~d~i~~--l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~---------~l~~~i~~~~~~a~~~~~~~ 472 (718)
T PLN03073 404 LNTVVTDILH--LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRS---------HMQAFIDKFRYNAKRASLVQ 472 (718)
T ss_pred HHHhCCEEEE--EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhhhhhHHHh
Q ss_pred hhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHH---
Q 045279 367 RKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDR--- 443 (702)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~--- 443 (702)
.. .-..+.+...............+...+...-..+...+++......
T Consensus 473 s~-----------------------------~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~ 523 (718)
T PLN03073 473 SR-----------------------------IKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPL 523 (718)
T ss_pred hc-----------------------------chHHHHHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCe
Q ss_pred HHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----------CCeEEEEecccccccCcCchHHHH-
Q 045279 444 YIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----------GANFIHIKGPELLNKYVGESELAV- 511 (702)
Q Consensus 444 ~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----------~~~~~~i~~~~l~~~~~g~~~~~~- 511 (702)
.+... .+.+.++.-+.|+||+|+|||||+++++..+ ...+..+.........+.......
T Consensus 524 il~~v--------sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~ 595 (718)
T PLN03073 524 LFKNL--------NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYM 595 (718)
T ss_pred eEecc--------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHH
Q ss_pred ---------------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHH
Q 045279 512 ---------------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 512 ---------------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~ 551 (702)
|-.+.++....|.+|++|| ...|. .....
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD-----------~~s~~ 664 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-----------LDAVE 664 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-----------HHHHH
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
.++..+... ...||++|+.++.+.. -+|+++.+
T Consensus 665 ~l~~~L~~~----~gtvIivSHd~~~i~~------~~drv~~l 697 (718)
T PLN03073 665 ALIQGLVLF----QGGVLMVSHDEHLISG------SVDELWVV 697 (718)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHH------hCCEEEEE
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=85.40 Aligned_cols=69 Identities=29% Similarity=0.436 Sum_probs=45.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
...+++|+||||||||+|+.+||+.+ +..+++++..++........ ......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999886 45677787766544321111 1112222222 2356999999944
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-07 Score=96.30 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=89.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh-----hcc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-----VSG- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l-----~~~- 197 (702)
-+|.|++.+|..+.-.+........ ......+..-|+||+|.||||||.|.+.+++.....+ ++++... ...
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred CcCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 4688999988876532222111100 0001134566999999999999999998876654333 3433321 111
Q ss_pred ----cccccHHHH-HHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 198 ----VSGASEENI-RDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 198 ----~~g~~~~~~-~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..|+ ..+ .+.+-.|. ..|++|||+|.+.... ...|...|+.-...+..++ ...
T Consensus 102 ~~d~~~~~--~~leaGalvlad---~GiccIDe~dk~~~~~-----------~~~l~eaMEqq~isi~kag------i~~ 159 (331)
T PF00493_consen 102 SRDPVTGE--WVLEAGALVLAD---GGICCIDEFDKMKEDD-----------RDALHEAMEQQTISIAKAG------IVT 159 (331)
T ss_dssp CCCGGTSS--ECEEE-HHHHCT---TSEEEECTTTT--CHH-----------HHHHHHHHHCSCEEECTSS------SEE
T ss_pred ccccccce--eEEeCCchhccc---CceeeecccccccchH-----------HHHHHHHHHcCeeccchhh------hcc
Confidence 0111 000 12333333 3499999999886432 3357777775433332221 111
Q ss_pred CCCCeEEEEEecCCCC-------------CCCccccCCCCcceEEEe-CCCCHHHHHHHHHHhhcCc
Q 045279 273 SKPGYVLVIGATNRPD-------------AVDPALRRPGRFDREIVL-GVPDENARVQILSVLTRNL 325 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i~~-~~p~~~er~~Il~~~~~~~ 325 (702)
..+-+.-|+|++|+.. .+++.+++ |||-++.+ ..|+.+.-..+..+++..+
T Consensus 160 ~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 160 TLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 1244578999999865 47889999 99987654 5666666666666666554
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=81.38 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=84.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeE--------------EEEecccccccCc---CchHHHHHHHHHHHH----
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANF--------------IHIKGPELLNKYV---GESELAVRTLFSRAR---- 519 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~--------------~~i~~~~l~~~~~---g~~~~~~~~~f~~a~---- 519 (702)
.++..+||+||.|+||..+|.++|..+-+.- ..-.-+|+.--+. .-....+|.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4677899999999999999999998662210 0000011111010 112334555554432
Q ss_pred -hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 520 -TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 520 -~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
.....|++|+++|.+. ....|.||..++. +..++++|.+|+.++.+-|.+++ |+- .+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~-----------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-----------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-----------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1346899999999999 8999999999996 45678888899999999999988 984 5667766
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-06 Score=86.99 Aligned_cols=143 Identities=24% Similarity=0.345 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC-e--EEEEec-cc--------c-------------cc-cC------------
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA-N--FIHIKG-PE--------L-------------LN-KY------------ 503 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~-~--~~~i~~-~~--------l-------------~~-~~------------ 503 (702)
+...++++||.|+|||++++.+...+.. . .+.+.. .. + .. ..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 4567899999999999999999998732 1 111111 00 0 00 00
Q ss_pred cCchHHHHHHHHHHHHhC-CCeEEEEeCcchhh-cccCCCCchHHHHHHHHHHHhhhCCCCCCcE-EEEEecCCC---C-
Q 045279 504 VGESELAVRTLFSRARTC-SPCILFFDEVDALT-TKRGKEGGWVVERLLNQLLIELDGADKRKGV-FVIGATNRP---D- 576 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~-~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~atn~~---~- 576 (702)
.......+..++...... ...||+|||++.+. ..+.. ...+..|...++......++ +|+++|... .
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED------KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT------HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch------HHHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 011234455666665543 34899999999998 22211 45566666666654344444 444444321 1
Q ss_pred -ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC
Q 045279 577 -VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 577 -~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
.-...+. +|+.. +.+++.+.++..++++..+++.
T Consensus 173 ~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 173 LDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp T-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC
T ss_pred hcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 1122232 38876 9999999999999999987765
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=98.33 Aligned_cols=143 Identities=23% Similarity=0.300 Sum_probs=96.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh------cc----cccccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV------SG----VSGASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~------~~----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
.++||.||.|+|||.++..+|..++..++.++-.... .. ..|....+-..+.+.++.+ +++++||++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEEEeccccc
Confidence 4699999999999999999999999999887765432 21 2233444444555555544 5999999975
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------CCCccccCCCCcce
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------AVDPALRRPGRFDR 302 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------~ld~al~r~~Rf~~ 302 (702)
... .++..|...+++...++.+.... ....+++.++.+|-|++. .+..+++. || .
T Consensus 519 a~~-----------dvL~aLnrllddnRel~ipe~~r-----lv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf-~ 579 (1856)
T KOG1808|consen 519 APH-----------DVLEALNRLLDDNRELFIPETQR-----LVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RF-I 579 (1856)
T ss_pred cch-----------HHHHHHHhhhhhhccccccccce-----eeccCcchhhhhhccCccccchhhhhhhcccc--cc-h
Confidence 542 35666777777655444433222 222345577777778874 45677777 88 5
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 045279 303 EIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 303 ~i~~~~p~~~er~~Il~~~~ 322 (702)
.++|..-..++...|+...+
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 57777777777777876544
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=75.42 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=63.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc----------------------cCcCc--hHHHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN----------------------KYVGE--SELAVRTLFSRA 518 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~----------------------~~~g~--~~~~~~~~f~~a 518 (702)
++++||||+|||+++..++... +.+++.++...... .+... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 45666665443221 01111 111122334556
Q ss_pred HhCCCeEEEEeCcchhhcccCC---CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 519 RTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
....+.+|+|||+..+...... .......+.+..++..+ ...++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 6678899999999988743211 11122234444444443 2346667777765543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=74.01 Aligned_cols=140 Identities=17% Similarity=0.238 Sum_probs=75.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEechhhhcccc------------cccHHHHHHHH-HHHHhhC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGV---------PFYKISATEVVSGVS------------GASEENIRDLF-SKAYRTA 217 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~---------~~~~i~~~~l~~~~~------------g~~~~~~~~~f-~~a~~~~ 217 (702)
-++|+|+||+|||++++.++..+.. .++.+.+.+...... ..........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999877621 123444443322210 01111111111 1222345
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--CCCcccc
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD--AVDPALR 295 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~--~ld~al~ 295 (702)
..+|+||-+|.+...... .....+...+...+... .+.++.+|.++.+.. .+...+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~------------------~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQA------------------LPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhc------------------cCCCCeEEEEEcCChHHHHHHhcC
Confidence 668999999998864332 11112222222233220 012245555554422 2333332
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 296 RPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 296 r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
. . ..+.+...+.++..++++.+++.
T Consensus 141 ~---~-~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 141 Q---A-QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred C---C-cEEEECCCCHHHHHHHHHHHhhc
Confidence 2 1 46889999999999999887753
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=82.35 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEE-------------EE---ecccccccCc-C--chHHHHHHHHHHHH--
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFI-------------HI---KGPELLNKYV-G--ESELAVRTLFSRAR-- 519 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~-------------~i---~~~~l~~~~~-g--~~~~~~~~~f~~a~-- 519 (702)
+.+..+||+|| +||+++|+.+|..+-+.-- .+ +-+|+.--.. | -.-..+|.+...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 55678899996 6899999999986622100 00 0012111000 1 12345666665543
Q ss_pred --hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 520 --TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 520 --~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
.....|++||++|.+. ....|.||..++.. ..++++|.+|+.++.+-|.+.+ |+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEEP--p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~- 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEEP--QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK- 162 (290)
T ss_pred cccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-
Confidence 2345799999999999 88999999999964 4567888889889999999988 99 5788876
Q ss_pred CHHHHHHHHH
Q 045279 598 TPDERGLILE 607 (702)
Q Consensus 598 ~~~~r~~il~ 607 (702)
+.++..+++.
T Consensus 163 ~~~~~~~~L~ 172 (290)
T PRK07276 163 NEAYLIQLLE 172 (290)
T ss_pred cHHHHHHHHH
Confidence 5555545543
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-06 Score=93.33 Aligned_cols=197 Identities=18% Similarity=0.228 Sum_probs=108.0
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc---
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV--- 198 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~--- 198 (702)
.++|.......+...+.. -.....+++++|++||||+++|+++.... +.+|+.++|+.+....
T Consensus 140 ~lig~s~~~~~~~~~i~~-----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL-----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhh-----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 466666666666554421 12345779999999999999999997654 5789999998764321
Q ss_pred --ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 199 --SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 199 --~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.|... ....++|..+ .+++||||||+.|....+ ..|+..++.... ...|+.
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~~~q-----------~~l~~~l~~~~~-~~~~~~----- 268 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPMMQ-----------VRLLRAIQEREV-QRVGSN----- 268 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCHHHH-----------HHHHHHHccCcE-EeCCCC-----
Confidence 11000 0001122332 356999999999986533 235555543211 111111
Q ss_pred CCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---C-c
Q 045279 270 ASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E---G-S 330 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~---~-~ 330 (702)
...+.++++|+||+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++..+.. . . .
T Consensus 269 --~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~--~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 343 (441)
T PRK10365 269 --QTISVDVRLIAATHRDLAAEVNAGRFRQDLYY--RL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP 343 (441)
T ss_pred --ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 11233478998887632 12222322 44 356788888776654 44444433211 0 1 1
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
..+..+....=-.+.++|.++++.++.
T Consensus 344 ~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 344 QAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 123334433322366788887777654
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=81.73 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=90.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-------------eEEEEecccccccCcCchHHHHHHHHHHHHh-----CC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-------------NFIHIKGPELLNKYVGESELAVRTLFSRART-----CS 522 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~ 522 (702)
......||+|+.|.||+.+|+.++..+-+ +++.++.. +.- -+-..++.+.+.+.- ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 34456789999999999999999987622 12222200 000 122345566555421 36
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHH
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
..|++||++|.+. ....|.||..|+.. ...+++|.+|+.++.+-|.+.+ |+ .++.|++++.++.
T Consensus 91 ~KvvII~~~e~m~-----------~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l 154 (299)
T PRK07132 91 KKILIIKNIEKTS-----------NSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKI 154 (299)
T ss_pred ceEEEEecccccC-----------HHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHH
Confidence 6899999999998 88899999999974 4566777777788889888887 88 4899999998887
Q ss_pred HHHHHH
Q 045279 603 GLILEA 608 (702)
Q Consensus 603 ~~il~~ 608 (702)
...+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 766653
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-06 Score=72.10 Aligned_cols=23 Identities=43% Similarity=0.850 Sum_probs=20.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998764
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=78.25 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=52.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+..++||+|||||.++|.+|..+|.+++.++|++.++ ...+.++|.-+.. .++.+.|||++.+.
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS 97 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh
Confidence 3456789999999999999999999999999999988654 3456667755544 46899999999987
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=73.58 Aligned_cols=141 Identities=15% Similarity=0.192 Sum_probs=72.8
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC--------Ce-EEEEeccccccc------------CcCchHHHHHHHH-HHHHhCCC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG--------AN-FIHIKGPELLNK------------YVGESELAVRTLF-SRARTCSP 523 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~--------~~-~~~i~~~~l~~~------------~~g~~~~~~~~~f-~~a~~~~~ 523 (702)
++++|+||+|||++++.++..+. .. ++.+...+.... ........+...+ ..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 68999999999999999998661 11 223333222211 0011111112212 22334566
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHH
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 603 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~ 603 (702)
.+|+||-+|.+....+..........+..++.. ......+++|.+.+.....+...+.. . ..+.++..+.++..
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEEDIK 156 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHHHHH
Confidence 789999999998543221111122333333332 01222233332222222122222222 1 57889999999999
Q ss_pred HHHHHHhcc
Q 045279 604 LILEALARK 612 (702)
Q Consensus 604 ~il~~~~~~ 612 (702)
++++.+++.
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988764
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-06 Score=90.48 Aligned_cols=175 Identities=22% Similarity=0.282 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh-----hhcc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE-----VVSG 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~-----l~~~ 197 (702)
-.|.|+|++|+-+.-.+.- -...-+...| .+..-||||+|.||||||-+.+.+++.+..-.+. ++.. +...
T Consensus 429 PsIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTay 505 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAY 505 (804)
T ss_pred hhhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceee
Confidence 4678999999887633311 1111111112 4455789999999999999999999988544332 2110 1000
Q ss_pred cccccHHHHHHHHHHHH---hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAY---RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~---~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. .....+++..+.. -....|..|||+|+|.....+ + |..+|+.-...+-. -++-...
T Consensus 506 Vt--rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS--------v---LhEvMEQQTvSIAK------AGII~sL 566 (804)
T KOG0478|consen 506 VT--KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS--------V---LHEVMEQQTLSIAK------AGIIASL 566 (804)
T ss_pred EE--ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH--------H---HHHHHHHhhhhHhh------cceeeec
Confidence 00 0011122211111 123458899999999644322 1 33333321111110 0111122
Q ss_pred CCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhh
Q 045279 275 PGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLT 322 (702)
Q Consensus 275 ~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~ 322 (702)
+.+.=|||++|+.+ .|+|.|++ ||+-++ .++.|++..-+.+..++.
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 33456999999744 58899999 998765 566777664455555443
|
|
| >PRK06851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.1e-05 Score=78.85 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=29.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE 498 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 498 (702)
.+-++|.|+||||||++++.++..+ |..+..+.|+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4458999999999999999999877 77777777653
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=79.11 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=81.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe------EEEechhhhcc--------cc---cccHHHHHHHHHHHH----
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF------YKISATEVVSG--------VS---GASEENIRDLFSKAY---- 214 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~------~~i~~~~l~~~--------~~---g~~~~~~~~~f~~a~---- 214 (702)
.+++.+||+||+|+||..+|.++|+.+-+.- ..-+|..+..+ +. .-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567899999999999999999998873211 00111111111 00 011233444443322
Q ss_pred h-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc
Q 045279 215 R-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293 (702)
Q Consensus 215 ~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a 293 (702)
. ++..|++|+++|.|... ..+.||..+++ .|.++++|..|+.++.+.|.
T Consensus 85 e~~~~KV~II~~ae~m~~~-----------AaNaLLK~LEE-------------------Pp~~t~fiLit~~~~~lLpT 134 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ-----------SANSLLKLIEE-------------------PPKNTYGIFTTRNENNILNT 134 (261)
T ss_pred hcCCCEEEEeccHhhhCHH-----------HHHHHHHhhcC-------------------CCCCeEEEEEECChHhCchH
Confidence 2 23569999999988743 34568998886 46779999999999999999
Q ss_pred ccCCCCcceEEEeCCC
Q 045279 294 LRRPGRFDREIVLGVP 309 (702)
Q Consensus 294 l~r~~Rf~~~i~~~~p 309 (702)
+++ |+ ..+.++.+
T Consensus 135 I~S--RC-q~~~~~~~ 147 (261)
T PRK05818 135 ILS--RC-VQYVVLSK 147 (261)
T ss_pred hhh--he-eeeecCCh
Confidence 999 98 45777666
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-06 Score=98.07 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=120.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc-------hHHHHHHHH---HH--HHhCCCeEEEEeCcch
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE-------SELAVRTLF---SR--ARTCSPCILFFDEVDA 533 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~-------~~~~~~~~f---~~--a~~~~~~vl~iDEid~ 533 (702)
++++||||+|||+.+.++|..++..+++.++++..+++... +...+...| .. .......||+|||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 68999999999999999999999999999999876654321 111222222 00 1112234999999999
Q ss_pred hhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC
Q 045279 534 LTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 534 l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
+... . +..+.++-.... ....=||+++|.........+. |-...++|+.|+.+.+..-+...+...
T Consensus 440 ~~~~-d-------Rg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 440 MFGE-D-------RGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred ccch-h-------hhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 8851 1 222222222222 2233478889988776664444 555689999999998776666655543
Q ss_pred CC-CCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 614 PI-DDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI---SSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 614 ~~-~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~---~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+ -.+..++.+. ..+|+|||+++....+..+..-.. ............++..+|+.+...+.
T Consensus 506 ~~ki~~~~l~~~s------~~~~~DiR~~i~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~ 571 (871)
T KOG1968|consen 506 GIKISDDVLEEIS------KLSGGDIRQIIMQLQFWSLSKPAELPKKKGTPIKTSKKNITVKDFDAAEGLLD 571 (871)
T ss_pred ceecCcHHHHHHH------HhcccCHHHHHHHHhhhhccchhhhccccCccccccccccccchhHHHhhhcc
Confidence 33 3344566666 346899999998777663331111 11111112123566666666655544
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-06 Score=86.06 Aligned_cols=140 Identities=20% Similarity=0.296 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhC-Ce--EEEEecccccccCcCchHHHHHHHHHHH-----------HhCCCeEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAG-AN--FIHIKGPELLNKYVGESELAVRTLFSRA-----------RTCSPCILF 527 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~-~~--~~~i~~~~l~~~~~g~~~~~~~~~f~~a-----------~~~~~~vl~ 527 (702)
...++||+||+|||||.+++.+-..+. .. ...++.+.. -+...++.+++.. ......|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 456899999999999999987665442 22 233443321 1222233332211 123446999
Q ss_pred EeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------CCCcEEEEEecCCC---CccCccccCCCccceEEEcCCC
Q 045279 528 FDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------KRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p 597 (702)
||++..-.... .+.....+++.+++..---+. .-.++.+|+|+|.. ..+.+.++| .| .++.++.|
T Consensus 106 iDDlN~p~~d~--ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p 180 (272)
T PF12775_consen 106 IDDLNMPQPDK--YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYP 180 (272)
T ss_dssp EETTT-S---T--TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----
T ss_pred ecccCCCCCCC--CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCC
Confidence 99998655322 222222344444443210011 11357778888753 257888888 77 48999999
Q ss_pred CHHHHHHHHHHHhcc
Q 045279 598 TPDERGLILEALARK 612 (702)
Q Consensus 598 ~~~~r~~il~~~~~~ 612 (702)
+.+....|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999888887664
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-06 Score=95.06 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=92.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhcccccccH--H--------HHHHHHHHHHhhCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVSGVSGASE--E--------NIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~~~~g~~~--~--------~~~~~f~~a~~~~p~il~iDEi 226 (702)
.||+|.|++|||||+++++++..+.. +|+.+..+.-....+|... . --.+++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999999864 7776655544444444431 1 01233444433 49999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcceE
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDRE 303 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~~ 303 (702)
+.+. ..++..|+..|+.-...+.. .+.+...|.++++||+.|.. ..++++++. ||+..
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR------~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~ 163 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLER------DGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFH 163 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEE------CCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEE
Confidence 6655 45677899999865443321 22333456779999985543 358999999 99999
Q ss_pred EEeCCCCHHH
Q 045279 304 IVLGVPDENA 313 (702)
Q Consensus 304 i~~~~p~~~e 313 (702)
+.++.|+..+
T Consensus 164 v~v~~~~~~~ 173 (584)
T PRK13406 164 LDLDGLALRD 173 (584)
T ss_pred EEcCCCChHH
Confidence 9999888654
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.3e-06 Score=92.48 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=87.9
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE-EecccccccCcC
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH-IKGPELLNKYVG 505 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~l~~~~~g 505 (702)
...|.|.+.+|+.+--.+... ......+- .++.--|+||+|-||||||.+.+.+++.+...++. -.++.- +|
T Consensus 285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 345788888887653211110 00000000 02223579999999999999999999887544332 122111 11
Q ss_pred chHHHHHHHH--H---HH---HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcE
Q 045279 506 ESELAVRTLF--S---RA---RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGV 566 (702)
Q Consensus 506 ~~~~~~~~~f--~---~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~ 566 (702)
-+...++.-. + .| .-..++|..|||+|.+. ....+.+.-.|+... -+.++
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~-----------~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN-----------EEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC-----------hHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 1111111111 0 11 12367899999999987 455555555565421 23456
Q ss_pred EEEEecCCCC-------------ccCccccCCCccceEEEcC-CCCHH
Q 045279 567 FVIGATNRPD-------------VMDRAVLRPGRFGKLLYVP-LPTPD 600 (702)
Q Consensus 567 ~vI~atn~~~-------------~ld~a~~r~gRf~~~i~~~-~p~~~ 600 (702)
-|++|+|... .|++++++ |||.++.+. .|+.+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~ 473 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEE 473 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCcc
Confidence 6788888653 67788888 999887665 45554
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.9e-05 Score=80.29 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=43.2
Q ss_pred CcccccCHHHHHHHHHHHhhhh-ccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 122 RFQDLGGMESVLEELKMEVIVP-LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~-~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
+.+++.=..+-+.++.+++... ...+++ ..+-+||+||+||||||.++.|+++++..++.-
T Consensus 80 t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-------~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 80 TLEELAVHKKKISEVKQWLKQVAEFTPKL-------GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cHHHHhhhHHhHHHHHHHHHHHHHhccCC-------CceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 6677766666666677666411 112222 234589999999999999999999999887653
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.5e-05 Score=76.00 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=84.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEechhhhcc------c---ccc--cHHHHHHHHHHHH--
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISATEVVSG------V---SGA--SEENIRDLFSKAY-- 214 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~~~l~~~------~---~g~--~~~~~~~~f~~a~-- 214 (702)
+-++.+||+|| +||+++|+.+|+.+-+.- ..-+|..+..+ + .|. .-..++.+...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44677999996 689999999998873211 01111111111 0 111 2245555555443
Q ss_pred --hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCc
Q 045279 215 --RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDP 292 (702)
Q Consensus 215 --~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~ 292 (702)
.+...|++||++|.|... ..+.||+.+++ .|.++++|.+|+.++.+-|
T Consensus 100 p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEE-------------------Pp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN-----------AANSLLKVIEE-------------------PQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred cccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcC-------------------CCCCeEEEEEECChhhCch
Confidence 234469999999998744 34568998886 3556889999999999999
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 293 ALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 293 al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
.+++ |+ ..+.|+. +.++..+++.
T Consensus 150 TI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 150 TIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 9999 99 6788865 5565555554
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-06 Score=83.98 Aligned_cols=137 Identities=24% Similarity=0.394 Sum_probs=80.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH------HhCCCeEEEechhhhcc-------------cccccHHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIAN------ETGVPFYKISATEVVSG-------------VSGASEENIRDLFSKAY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~------~l~~~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~ 214 (702)
.++...++||.||+|.||+.||+-|-. .+..+|+.+||..+... +.|..+. -.+++..|
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~-r~gllrsa- 281 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARES-REGLLRSA- 281 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhh-hhhhhccC-
Confidence 456678899999999999999998843 35789999999987543 1122111 12333333
Q ss_pred hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-C-C----
Q 045279 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-P-D---- 288 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~-~---- 288 (702)
...+||+|||..+..+.+. -|+..+++.. ++..|+.... ...+.+|+-|-. . .
T Consensus 282 --dggmlfldeigelgadeqa-----------mllkaieekr-f~pfgsdr~v-------~sdfqliagtvrdlrq~vae 340 (531)
T COG4650 282 --DGGMLFLDEIGELGADEQA-----------MLLKAIEEKR-FYPFGSDRQV-------SSDFQLIAGTVRDLRQLVAE 340 (531)
T ss_pred --CCceEehHhhhhcCccHHH-----------HHHHHHHhhc-cCCCCCcccc-------ccchHHhhhhHHHHHHHHhc
Confidence 2349999999776644332 3666676543 3332322211 123666765533 1 1
Q ss_pred -CCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 289 -AVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 289 -~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
..-..+.. |+ ..+.|..|...+|.+
T Consensus 341 g~fredl~a--ri-nlwtf~lpgl~qr~e 366 (531)
T COG4650 341 GKFREDLYA--RI-NLWTFTLPGLRQRQE 366 (531)
T ss_pred cchHHHHHH--hh-heeeeeccccccCcc
Confidence 12222322 44 456788887766543
|
|
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=77.57 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=74.2
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC-----
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG----- 505 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g----- 505 (702)
+.|+.-+++.+-..+......+. -+.|.-+-|+|+|||||.++++.||+.+-..- -.|.++..|+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCC
Confidence 56777676666555544332221 13345566899999999999999999761100 01122221111
Q ss_pred -------chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-----CCCCcEEEEEecC
Q 045279 506 -------ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-----DKRKGVFVIGATN 573 (702)
Q Consensus 506 -------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~vI~atn 573 (702)
..++..+.+-..+..+..++++|||+|.+. ..++..+--.+|.. ....+.++|+-+|
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp-----------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP-----------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC-----------HhHHHHHhhhhccccccccccccceEEEEEcC
Confidence 122233455556667888999999999998 66666666556532 2344567777776
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-05 Score=77.45 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEechhhhcc-------
Q 045279 130 ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE--TGVPF---YKISATEVVSG------- 197 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~---~~i~~~~l~~~------- 197 (702)
+..+++|.+.+.. ......-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 2 e~~~~~l~~~L~~-----------~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLD-----------NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHT-----------TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhC-----------CCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 4566667666622 1145677999999999999999999977 44332 33333321110
Q ss_pred ------c-----ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ------V-----SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ------~-----~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
. ...........+.......+++|++|+++... .+..+...+...
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~----------- 126 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSF----------- 126 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCH-----------
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc-------------cccccccccccc-----------
Confidence 0 11122334445555556668999999995432 111122221111
Q ss_pred CCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cCCcccHHHHHhhCCC
Q 045279 267 KSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VEGSFDLVKIARSTPG 342 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~~~~~~~~la~~t~g 342 (702)
..+..||.||.... +-..+.. . ...+.++..+.++..++|........ .........+++.+.|
T Consensus 127 --------~~~~kilvTTR~~~-v~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 127 --------SSGSKILVTTRDRS-VAGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp --------HSS-EEEEEESCGG-GGTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT
T ss_pred --------cccccccccccccc-ccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11245666776532 2222211 1 36799999999999999988765443 1122335678888877
Q ss_pred CCH
Q 045279 343 FVG 345 (702)
Q Consensus 343 ~~~ 345 (702)
...
T Consensus 195 lPL 197 (287)
T PF00931_consen 195 LPL 197 (287)
T ss_dssp -HH
T ss_pred ccc
Confidence 443
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.04 E-value=7e-05 Score=70.46 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=46.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------------cccc--cHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------------VSGA--SEENIRDLFSKA 213 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------------~~g~--~~~~~~~~f~~a 213 (702)
++|+||||+|||+++..++... +.+++.++....... .... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 455666555432210 0011 111111223445
Q ss_pred HhhCCceEEechhhHhhhc
Q 045279 214 YRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 214 ~~~~p~il~iDEid~l~~~ 232 (702)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667889999999988754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=69.26 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhC
Q 045279 161 ILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~ 183 (702)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988874
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=74.43 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=43.0
Q ss_pred CcCc--hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 503 YVGE--SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 503 ~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|..+ +.+..|..+++|....|.|++|||--+... .+++.+.|..|....... ...|+.|+..
T Consensus 133 yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD----------PElv~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 133 YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD----------PELVGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC----------HHHHHHHHHHHHHHHHcC-CeEEEEechh
Confidence 5443 445568888999999999999999665542 677777777776655444 4455567654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 702 | ||||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 1e-119 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 2e-37 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 1e-119 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 3e-37 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 4e-63 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 9e-60 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-37 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 1e-59 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 2e-37 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 1e-59 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-37 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 1e-58 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 1e-52 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 2e-37 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 2e-45 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 2e-41 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 9e-41 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-38 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 8e-38 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 2e-37 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 2e-37 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-37 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 4e-37 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 5e-37 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 8e-37 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 9e-37 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-36 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 5e-36 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 3e-33 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 3e-35 | ||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 4e-35 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 6e-35 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 1e-34 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-34 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 6e-34 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 4e-34 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 7e-33 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 2e-31 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 8e-31 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 6e-30 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 2e-28 | ||
| 1nsf_A | 273 | D2 Hexamerization Domain Of N-Ethylmaleimide Sensit | 1e-07 | ||
| 1d2n_A | 272 | D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Prot | 1e-07 | ||
| 1ofh_A | 310 | Asymmetric Complex Between Hslv And I-domain Delete | 6e-07 | ||
| 1ixr_C | 312 | Ruva-Ruvb Complex Length = 312 | 4e-06 | ||
| 1ixr_C | 312 | Ruva-Ruvb Complex Length = 312 | 4e-04 | ||
| 1ixs_B | 318 | Structure Of Ruvb Complexed With Ruva Domain Iii Le | 4e-06 | ||
| 1ixs_B | 318 | Structure Of Ruvb Complexed With Ruva Domain Iii Le | 4e-04 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 5e-06 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 4e-04 | ||
| 3hte_A | 363 | Crystal Structure Of Nucleotide-Free Hexameric Clpx | 2e-05 | ||
| 3hws_A | 363 | Crystal Structure Of Nucleotide-Bound Hexameric Clp | 2e-05 | ||
| 1um8_A | 376 | Crystal Structure Of Helicobacter Pylori Clpx Lengt | 2e-05 | ||
| 2c9o_A | 456 | 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 | 6e-04 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 6e-04 | ||
| 1g3i_A | 444 | Crystal Structure Of The Hsluv Protease-Chaperone C | 9e-04 |
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor (Nsf) Length = 273 | Back alignment and structure |
|
| >pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein Length = 272 | Back alignment and structure |
|
| >pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 | Back alignment and structure |
|
| >pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 | Back alignment and structure |
|
| >pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 | Back alignment and structure |
|
| >pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 | Back alignment and structure |
|
| >pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 | Back alignment and structure |
|
| >pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-139
Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 19/301 (6%)
Query: 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGK 476
RE +P V WED+GGL+ ++ E + ++ P+++ +FG+ G L YGPPGCGK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 477 TLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536
TL+AKA+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 537 KRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593
RG +GG +R++NQ+L E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 594 VPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653
+PLP R IL+A RK P+ VDL +A+ SGADL + A A+ +
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRES 240
Query: 654 L--------------ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETF 699
+ + + D I+ HFE+A+ SVS+ I++Y+ ++T
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 700 K 700
+
Sbjct: 301 Q 301
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 281 bits (722), Expect = 7e-90
Identities = 108/324 (33%), Positives = 154/324 (47%), Gaps = 40/324 (12%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
++D+GG+E V EL+ V P+ HP G+ P G+L YGPPGCGKT LA AIANE
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQRE-- 239
F I E+++ G SE N+R++F KA + AP ++F DE+D+IA R +
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132
Query: 240 --MERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRP 297
+ R++ Q++T MD G K+ V +IGATNRPD +DPA+ RP
Sbjct: 133 GAAD-RVINQILTEMD--------GMSTKKN---------VFIIGATNRPDIIDPAILRP 174
Query: 298 GRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357
GR D+ I + +PDE +RV IL R V DL +A+ T GF GADL + +A
Sbjct: 175 GRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK 234
Query: 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR 417
LA++ I+ + E+ I FEEA + + S
Sbjct: 235 LAIRESIESEIRRERERQTNPSAMEV-------EEDDPVPEIRRDHFEEAMRFARRS--- 284
Query: 418 EGFSAIPNVKWEDVGGLDYLRHEF 441
V D+ +
Sbjct: 285 --------VSDNDIRKYEMFAQTL 300
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-139
Identities = 124/267 (46%), Positives = 178/267 (66%), Gaps = 3/267 (1%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV W D+G L+ +R E I+ ++ P++++ G+ G LL GPPGCGKTL+AKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
VANE+G NFI +KGPELLN YVGESE AVR +F RA+ +PC++FFDEVDAL +R
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 543 GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602
R++NQLL E+DG + R+ VF++ ATNRPD++D A+LRPGR K L+V LP P +R
Sbjct: 124 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183
Query: 603 GLILEALAR---KKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659
IL+ + + K P+D V+L IA C+ +GADL+A++ EA++ AL ++ KS
Sbjct: 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243
Query: 660 SSDVTPFTIKLTHFEQALSKISPSVSE 686
++ + HFE+A K+ S+S+
Sbjct: 244 GNEKGELKVSHKHFEEAFKKVRSSISK 270
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 1e-85
Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 43/302 (14%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ D+G +E + EEL M ++ P+ +P + LG+ AG+LL GPPGCGKT LA A+ANE
Sbjct: 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+G+ F + E+++ G SE +R +F +A +AP ++F DE+DA+ +R + +
Sbjct: 68 SGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS 127
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
R+V QL+T MD G + + V ++ ATNRPD +DPA+ RPGR D
Sbjct: 128 VRVVNQLLTEMD--------GLEARQQ---------VFIMAATNRPDIIDPAILRPGRLD 170
Query: 302 REIVLGVPDENARVQILSVLTRNLR---VEGSFDLVKIARS--TPGFVGADLAALANKAG 356
+ + +G+P R+ IL +T+N ++ +L IA + GADL+AL +A
Sbjct: 171 KTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREAS 230
Query: 357 NLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416
A+++ + ++KS E L ++ FEEA K V+ S
Sbjct: 231 ICALRQEMARQKSG---------------------NEKGELKVSHKHFEEAFKKVRSSIS 269
Query: 417 RE 418
++
Sbjct: 270 KK 271
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 401 bits (1033), Expect = e-133
Identities = 140/369 (37%), Positives = 206/369 (55%), Gaps = 42/369 (11%)
Query: 75 KNIEFEVM---PRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMES 131
+ +EF+V+ P +V + + E + +E + + D+GG
Sbjct: 159 RAVEFKVVETDPSPYCIVA-PDTVIHCEGEPIKR------EDEEESLNEVGYDDIGGCRK 211
Query: 132 VLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191
L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANETG F+ I+
Sbjct: 212 QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271
Query: 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251
E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ERRIV+QL+T
Sbjct: 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL 331
Query: 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDE 311
MD + +V+V+ ATNRP+++DPALRR GRFDRE+ +G+PD
Sbjct: 332 MDGLK-----------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 312 NARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSEL 371
R++IL + T+N+++ DL ++A T G VGADLAAL ++A A+++ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL----- 429
Query: 372 SGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDV 431
D + E M L +TM DF A PS+ RE +P V WED+
Sbjct: 430 ----------IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 432 GGLDYLRHE 440
GG + H
Sbjct: 480 GGRSHHHHH 488
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 1e-92
Identities = 101/292 (34%), Positives = 151/292 (51%), Gaps = 8/292 (2%)
Query: 398 TITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEE 457
+ +P R + ++ V ++D+GG + + ++ P ++
Sbjct: 173 YCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 232
Query: 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517
GV G LLYGPPG GKTLIA+AVANE GA F I GPE+++K GESE +R F
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 518 ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577
A +P I+F DE+DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+
Sbjct: 293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352
Query: 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGAD 637
+D A+ R GRF + + + +P R IL+ + + D VDL +A GAD
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE--THGHVGAD 410
Query: 638 LAAMMNEAAMAALEDKLISSKSSSDVTP------FTIKLTHFEQALSKISPS 683
LAA+ +EAA+ A+ K+ + + + F ALS+ +PS
Sbjct: 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 273 bits (699), Expect = 3e-86
Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 39/317 (12%)
Query: 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGK 476
S PNVKWEDV GL+ + ++ +KFP ++ +G LLYGPPG GK
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGK 64
Query: 477 TLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536
+ +AKAVA EA + F + +L++K++GESE V+ LF+ AR P I+F D+VDALT
Sbjct: 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG 124
Query: 537 KRGKEGGWVVERLLNQLLIELDGADKR-KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVP 595
RG+ R+ +LL++++G +GV V+GATN P +D A+ R RF + +Y+P
Sbjct: 125 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 596 LPTPDERGLILEALARKKP-IDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL---- 650
LP R + E P + D T+ E SG+D+A ++ +A M +
Sbjct: 183 LPDLAARTTMFEINVGDTPCVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQ 240
Query: 651 ----------------------------EDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682
+ + + ++ + + F +A+ P
Sbjct: 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 300
Query: 683 SVSELQIQRYKTLSETF 699
+V+E + + + + F
Sbjct: 301 TVNEDDLLKQEQFTRDF 317
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 9e-75
Identities = 94/310 (30%), Positives = 155/310 (50%), Gaps = 33/310 (10%)
Query: 119 EGP--RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAH 176
E P +++D+ G+E E LK VI+P+ P L + +P +GILLYGPPG GK+ LA
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAK 69
Query: 177 AIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL 236
A+A E F+ +S++++VS G SE+ ++ LF+ A PSI+FID++DA+ R
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRR 296
+ E RRI T+L+ M+ G VLV+GATN P +D A+RR
Sbjct: 130 ESEASRRIKTELLVQMN--------GVGNDSQG--------VLVLGATNIPWQLDSAIRR 173
Query: 297 PGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKA 355
RF+R I + +PD AR + + + + D + T G+ G+D+A + A
Sbjct: 174 --RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 231
Query: 356 GNLAMKRIID-----------QRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDF 404
+++I +L+ S + + + +E++ +T+ DF
Sbjct: 232 LMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDF 291
Query: 405 EEATKMVQPS 414
+A K +P+
Sbjct: 292 LKAIKSTRPT 301
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 2e-84
Identities = 107/266 (40%), Positives = 150/266 (56%), Gaps = 16/266 (6%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV++ED+GGL+ E + +K PE +E+ G++ G LLYGPPG GKTL+AKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
A E A FI + G EL+ K++GE V+ +F A+ +P I+F DE+DA+ KR
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 544 WV---VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
V+R L QLL E+DG D R V +IGATNRPD++D A+LRPGRF +++ VP P
Sbjct: 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660
R IL+ RK + + V+L IA K E GA+L A+ EA M A+ +
Sbjct: 192 GRLEILKIHTRKMNLAEDVNLEEIA--KMTEGCVGAELKAICTEAGMNAIRELRD----- 244
Query: 661 SDVTPFTIKLTHFEQALSKISPSVSE 686
+ + F +A+ KI
Sbjct: 245 ------YVTMDDFRKAVEKIMEKKKV 264
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 4e-81
Identities = 108/301 (35%), Positives = 158/301 (52%), Gaps = 54/301 (17%)
Query: 123 FQDLGGMESVLEELKMEVIV-PLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
++D+GG+E ++E++ EV+ PL HP+L + +G+ P GILLYGPPG GKT LA A+A E
Sbjct: 16 YEDIGGLEKQMQEIR-EVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
T F ++ +E+V G ++D+F A APSI+FIDEIDAIA+KR + +
Sbjct: 75 TNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD 134
Query: 242 R---RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
R R + QL+ MD G V +IGATNRPD +DPA+ RPG
Sbjct: 135 REVQRTLMQLLAEMDGFDAR-----------------GDVKIIGATNRPDILDPAILRPG 177
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
RFDR I + PDE R++IL + TR + + +L +IA+ T G VGA+L A+ +AG
Sbjct: 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMN 237
Query: 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE 418
A++ R +TM DF +A + + + +
Sbjct: 238 AIRE--------------------------------LRDYVTMDDFRKAVEKIMEKKKVK 265
Query: 419 G 419
Sbjct: 266 V 266
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 2e-84
Identities = 97/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)
Query: 405 EEATKMVQPSSRREGFSAI----PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV 460
+E K ++P + I P V WED+ G+++ + +V + P+ +
Sbjct: 56 DERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR- 114
Query: 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRART 520
G LL+GPPG GKTLI K +A+++GA F I L +K+VGE E VR LF+ AR
Sbjct: 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARC 174
Query: 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATNRPDVM 578
P ++F DE+D+L ++RG R+ + L++LDGA + V+GATNRP +
Sbjct: 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234
Query: 579 DRAVLRPGRFGKLLYVPLPTPDERGLILE-ALARKKPIDDSVDLHTIAQSKFCENLSGAD 637
D A R R K LY+PLP R I+ +++++ ++ I Q + SGAD
Sbjct: 235 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ--SDAFSGAD 290
Query: 638 LAAMMNEAAMAAL---EDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKT 694
+ + EA++ + + I++ + V P I FE A + PSVS ++ Y+
Sbjct: 291 MTQLCREASLGPIRSLQTADIATITPDQVRP--IAYIDFENAFRTVRPSVSPKDLELYEN 348
Query: 695 LSETF 699
++TF
Sbjct: 349 WNKTF 353
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 4e-70
Identities = 94/349 (26%), Positives = 161/349 (46%), Gaps = 39/349 (11%)
Query: 67 ITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDL 126
I ++ E+N + P E K K + E + ++D+
Sbjct: 27 IPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDI 86
Query: 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186
G+E +K V+ P+ P + L P GILL+GPPG GKT + IA+++G F
Sbjct: 87 AGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATF 145
Query: 187 YKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT 246
+ ISA+ + S G E+ +R LF+ A P+++FIDEID++ S+R + + E RRI T
Sbjct: 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKT 205
Query: 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVL 306
+ + +D G S D +LV+GATNRP +D A RR R + + +
Sbjct: 206 EFLVQLD--------GATTSSEDR-------ILVVGATNRPQEIDEAARR--RLVKRLYI 248
Query: 307 GVPDENARVQILSV-LTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIID 365
+P+ +AR QI+ +++ ++ +I + + F GAD+ L +A ++ +
Sbjct: 249 PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT 308
Query: 366 QRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414
+ ++ + + +P I DFE A + V+PS
Sbjct: 309 ADIATITPDQV----------RP----------IAYIDFENAFRTVRPS 337
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 267 bits (683), Expect = 5e-83
Identities = 110/369 (29%), Positives = 170/369 (46%), Gaps = 26/369 (7%)
Query: 337 ARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMER 396
P + G + + + A K+ + P R
Sbjct: 36 HHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPST-------------PTTATR 82
Query: 397 LTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYE 456
+ +F + E VK++D+ G D + ++ PE +
Sbjct: 83 KKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFT 142
Query: 457 EFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFS 516
G LL+GPPG GKT++AKAVA E+ A F +I L +KYVGE E VR LF+
Sbjct: 143 GLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 517 RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG--ADKRKGVFVIGATNR 574
AR P I+F D+VD+L +R + RL + LIE DG + V V+GATNR
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261
Query: 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENL 633
P +D AVLR RF K +YV LP + R L+L+ L K+ +L +A+ +
Sbjct: 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARM--TDGY 317
Query: 634 SGADLAAMMNEAAMAA---LEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQ 690
SG+DL A+ +AA+ L+ + + + S+S++ I+L+ F ++L KI SVS ++
Sbjct: 318 SGSDLTALAKDAALGPIRELKPEQVKNMSASEMRN--IRLSDFTESLKKIKRSVSPQTLE 375
Query: 691 RYKTLSETF 699
Y ++ F
Sbjct: 376 AYIRWNKDF 384
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 5e-71
Identities = 97/397 (24%), Positives = 171/397 (43%), Gaps = 39/397 (9%)
Query: 19 PSTSSSTSSSSEEEDGVSTSEDAVYGEKVEPEFDLMKSMLRDSYSESKITRRKSEEKNIE 78
+ +++S + + T + G P + + +
Sbjct: 10 DPLTHTSNSLPRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTN 69
Query: 79 FEVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKM 138
P K ++++ + + E + +F D+ G + + L+
Sbjct: 70 RTNKPSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQE 129
Query: 139 EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198
VI+P P+L L P G+LL+GPPG GKT LA A+A E+ F+ ISA + S
Sbjct: 130 IVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188
Query: 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258
G E+ +R LF+ A PSI+FID++D++ +R + + RR+ T+ + D
Sbjct: 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD----- 243
Query: 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQIL 318
G Q + D VLV+GATNRP +D A+ R RF + + + +P+E R+ +L
Sbjct: 244 ---GVQSAGDD-------RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLL 291
Query: 319 SVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIA 377
L + +L ++AR T G+ G+DL ALA A ++ + ++ +S + +
Sbjct: 292 KNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMR 351
Query: 378 EQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414
I ++DF E+ K ++ S
Sbjct: 352 N--------------------IRLSDFTESLKKIKRS 368
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 6e-83
Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
V+W D+ G D + ++ PE + G LL+GPPG GKTL+A+AV
Sbjct: 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAV 74
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
A E A F++I L +KYVG+ E VR LF+ AR P I+F DEVD+L ++R
Sbjct: 75 ATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH 134
Query: 544 WVVERLLNQLLIELDG---ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
RL + L+E DG + V+ ATNRP +D A LR RF K +YV LP
Sbjct: 135 EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQ 192
Query: 601 ERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA---LEDKLIS 656
R L+L L +K+ D+ L +A K + SG+DL A+ +AA+ L + +
Sbjct: 193 TRELLLNRLLQKQGSPLDTEALRRLA--KITDGYSGSDLTALAKDAALEPIRELNVEQVK 250
Query: 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETF 699
S + I F +L +I SV+ + Y+ S+ +
Sbjct: 251 CLDISAMRA--ITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 2e-72
Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 38/294 (12%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ D+ G + + L+ VI+P P+L L P G+LL+GPPG GKT LA A+A E
Sbjct: 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATE 77
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
F ISA + S G E+ +R LF+ A PSI+FIDE+D++ S+R + + E
Sbjct: 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
RR+ T+ + D + ++V+ ATNRP +D A R RF
Sbjct: 138 RRLKTEFLVEFD--------------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLAM 360
+ + + +PDE R +L+ L + L ++A+ T G+ G+DL ALA A +
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 361 KRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414
+ + ++ L +++ IT DF + K ++ S
Sbjct: 242 RELNVEQVKCLDISAMRA--------------------ITEQDFHSSLKRIRRS 275
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 265 bits (678), Expect = 1e-82
Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 39/331 (11%)
Query: 403 DFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL 462
+ E K ++ + S PNVKWEDV GL+ + ++ +KFP ++
Sbjct: 25 NGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK-GNRKP 83
Query: 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCS 522
+G LLYGPPG GK+ +AKAVA EA + F + +L++K++GESE V+ LF+ AR
Sbjct: 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK 143
Query: 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-DKRKGVFVIGATNRPDVMDRA 581
P I+F D+VDALT RG+ R+ +LL++++G + +GV V+GATN P +D A
Sbjct: 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203
Query: 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKP-IDDSVDLHTIAQSKFCENLSGADLAA 640
+ R RF + +Y+PLP R + E P + D T+ E SG+D+A
Sbjct: 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG--AMTEGYSGSDIAV 259
Query: 641 MMNEAAMAAL--------------------------------EDKLISSKSSSDVTPFTI 668
++ +A M + + + + ++ +
Sbjct: 260 VVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDL 319
Query: 669 KLTHFEQALSKISPSVSELQIQRYKTLSETF 699
+ F +A+ P+V+E + + + + F
Sbjct: 320 TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDF 350
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 1e-70
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 31/305 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+++D+ G+E E LK VI+P+ P L + +P +GILLYGPPG GK+ LA A+A E
Sbjct: 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATE 107
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
F+ +S++++VS G SE+ ++ LF+ A PSI+FID++DA+ R + E
Sbjct: 108 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS 167
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRI T+L+ M+ G VLV+GATN P +D A+RR RF+
Sbjct: 168 RRIKTELLVQMN--------GVGNDSQG--------VLVLGATNIPWQLDSAIRR--RFE 209
Query: 302 REIVLGVPDENARVQILSVLTRNLR-VEGSFDLVKIARSTPGFVGADLAALANKAGNLAM 360
R I + +PD AR + + + V D + T G+ G+D+A + A +
Sbjct: 210 RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 269
Query: 361 KRIID-----------QRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATK 409
++I +L+ +S + + + +E++ +T+ DF +A K
Sbjct: 270 RKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIK 329
Query: 410 MVQPS 414
+P+
Sbjct: 330 STRPT 334
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 2e-81
Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 46/317 (14%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNVKW DV GL+ + ++ IKFP + G LL+GPPG GK+ +AKAV
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAV 65
Query: 484 ANEAG-ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
A EA + F I +L++K++GESE V+ LF AR P I+F DE+D+L R +
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 543 GWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
R+ + L+++ G G+ V+GATN P V+D A+ R RF K +Y+PLP P
Sbjct: 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183
Query: 602 RGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAAL---------- 650
R + + + D + + + SGAD++ ++ +A M +
Sbjct: 184 RAAMFKLHLGTTQNSLTEADFRELG--RKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241
Query: 651 ----------------------------EDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682
+ + + ++ ++LS P
Sbjct: 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKP 301
Query: 683 SVSELQIQRYKTLSETF 699
+V+E + + K +E F
Sbjct: 302 TVNEHDLLKLKKFTEDF 318
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 3e-73
Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 40/317 (12%)
Query: 119 EGP--RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAH 176
E P ++ D+ G+E E LK VI+P+ P L P GILL+GPPG GK+ LA
Sbjct: 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAK 63
Query: 177 AIANETGVP-FYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN 235
A+A E F+ IS++++VS G SE+ +++LF A PSI+FIDEID++ R
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123
Query: 236 LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALR 295
+ E RRI T+ + M V + +LV+GATN P +D A+R
Sbjct: 124 NESEAARRIKTEFLVQMQG----VGVDNDG------------ILVLGATNIPWVLDSAIR 167
Query: 296 RPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANK 354
R RF++ I + +P+ +AR + + + + D ++ R T G+ GAD++ +
Sbjct: 168 R--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225
Query: 355 AGNLAMKRIIDQ---RKSELSGNSIAEQHSDDWW-----------RQPWLPEEMERLT-- 398
A ++++ +K + DD W+ ++L
Sbjct: 226 ALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEP 285
Query: 399 -ITMTDFEEATKMVQPS 414
++M+D + +P+
Sbjct: 286 VVSMSDMLRSLSNTKPT 302
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 251 bits (641), Expect = 4e-76
Identities = 89/338 (26%), Positives = 143/338 (42%), Gaps = 46/338 (13%)
Query: 403 DFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL 462
+ K +Q + PNVKW DV GL+ + ++ IKFP +
Sbjct: 108 SDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTP 166
Query: 463 ETGFLLYGPPGCGKTLIAKAVANEAG-ANFIHIKGPELLNKYVGESELAVRTLFSRARTC 521
G LL+GPPG GK+ +AKAVA EA + F I +L++K++GESE V+ LF AR
Sbjct: 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN 226
Query: 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDR 580
P I+F DE+D+L R + R+ + L+++ G G+ V+GATN P V+D
Sbjct: 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLA 639
A+ R RF K +Y+PLP R + D + + + SGAD++
Sbjct: 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG--RKTDGYSGADIS 342
Query: 640 AMMNEAAMAAL--------------------------------------EDKLISSKSSS 661
++ +A M + +
Sbjct: 343 IIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGD 402
Query: 662 DVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETF 699
+ + + ++LS P+V+E + + K +E F
Sbjct: 403 KLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDF 440
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 1e-67
Identities = 99/399 (24%), Positives = 177/399 (44%), Gaps = 50/399 (12%)
Query: 46 KVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVK 105
K E + D K +R +E + R + ++ ++ + + + +S V+ K +S
Sbjct: 46 KYEAQGDKAKQSIRAKCTEY-LDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDG 104
Query: 106 GGMGLGAEE-----------LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLG 154
E+ + + ++ D+ G+E E LK VI+P+ P L
Sbjct: 105 EAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GK 163
Query: 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVP-FYKISATEVVSGVSGASEENIRDLFSKA 213
P GILL+GPPG GK+ LA A+A E F+ IS++++VS G SE+ +++LF A
Sbjct: 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA 223
Query: 214 YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273
PSI+FIDEID++ R + E RRI T+ + M G
Sbjct: 224 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ--------GVGVDNDG---- 271
Query: 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FD 332
+LV+GATN P +D A+RR RF++ I + +P+ +AR + + + + + D
Sbjct: 272 ----ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEAD 325
Query: 333 LVKIARSTPGFVGADLAALANKAGNLAMKRIIDQ---RKSELSGNSIAEQHSDDWW---- 385
++ R T G+ GAD++ + A ++++ +K + +D
Sbjct: 326 FQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCS 385
Query: 386 -------RQPWLPEEMERLT---ITMTDFEEATKMVQPS 414
W+ ++L ++M D + +P+
Sbjct: 386 PGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPT 424
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 2e-69
Identities = 48/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%)
Query: 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA 489
+ G D+ +V K + + + ++G G GK+ + V + G
Sbjct: 5 KLDGFYIAPAFMDKLVVHITK--NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 490 NFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKE-GGW 544
N I + EL + GE +R + A R + C LF +++DA + G
Sbjct: 63 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYT 122
Query: 545 VVERLLNQLLIEL------------DGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592
V +++N L+ + + V +I N + ++R GR K
Sbjct: 123 VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182
Query: 593 YVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652
+ PT ++R + + R D+V + K +N G + A ++
Sbjct: 183 WA--PTREDRIGVCTGIFRT----DNVPAEDVV--KIVDNFPGQSIDFFGALRARVYDDE 234
Query: 653 --KLISSKSSSDVTPFTIKLTHFEQALSKISPSVSEL 687
K +S + + + ++ +L
Sbjct: 235 VRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKL 271
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-56
Identities = 46/293 (15%), Positives = 100/293 (34%), Gaps = 25/293 (8%)
Query: 125 DLGGMESVLEELKMEVIVPLYHP-QLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG 183
L G + + ++ + ++ + ++G G GK+ + + G
Sbjct: 5 KLDGFYIAPAFMDK---LVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61
Query: 184 VPFYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKR-ENLQR 238
+ +SA E+ SG +G + IR + +A + +FI+++DA A + Q
Sbjct: 62 INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY 121
Query: 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
+ ++V + + ++ VQ +K + + V +I N + L R G
Sbjct: 122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR-----VPIIVTGNDFSTLYAPLIRDG 176
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
R ++ P R+ + + + R V + + F G + +
Sbjct: 177 RMEKFYW--APTREDRIGVCTGIFRTDNV----PAEDVVKIVDNFPGQSIDFFGALRARV 230
Query: 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411
+ E+ D P E+ +T+ E M+
Sbjct: 231 YDDEVRKWVSGT-----GIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNML 278
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 4e-65
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 18/261 (6%)
Query: 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVA 484
V ++DV G+ + E V +K PE + + G + G LL GPPGCGKTL+AKAVA
Sbjct: 2 GVSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 485 NEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW 544
EA F+ + G E + G VR+LF AR +PCI++ DE+DA+ KR
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 545 VV----ERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
E+ LNQLL+E+DG V V+ +TNR D++D A++RPGR + +++ LPT
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAALEDKLISSKS 659
ER I E + + S ++ ++ SGAD+A + NEAA AA E
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT----- 235
Query: 660 SSDVTPFTIKLTHFEQALSKI 680
++ +FE A+ ++
Sbjct: 236 -------SVHTLNFEYAVERV 249
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 9e-61
Identities = 92/302 (30%), Positives = 134/302 (44%), Gaps = 68/302 (22%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F+D+ GM E+ E + L P+ LG + G LL GPPGCGKT LA A+A E
Sbjct: 4 SFKDVAGMHEAKLEV-REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 182 TGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRE---- 234
VPF ++ E V G+ GA+ +R LF +A AP IV+IDEIDA+ KR
Sbjct: 63 AQVPFLAMAGAEFVEVIGGL-GAAR--VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 235 ---NLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVD 291
N + E + + QL+ MD + V+V+ +TNR D +D
Sbjct: 120 GFSNTEEE---QTLNQLLVEMD----------------GMGTTDH-VIVLASTNRADILD 159
Query: 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLV--KIARSTPGFVGADLA 349
AL RPGR DR + + +P R +I ++L++ S ++A TPGF GAD+A
Sbjct: 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219
Query: 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATK 409
+ N+A A + ++ +FE A +
Sbjct: 220 NICNEAALHAARE--------------------------------GHTSVHTLNFEYAVE 247
Query: 410 MV 411
V
Sbjct: 248 RV 249
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 3e-64
Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 34/275 (12%)
Query: 101 EESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAG 160
+K G E+ + + + + + + + P+
Sbjct: 13 TMDIKPAFGTNQEDY---ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVS 66
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN-IRDLFSKAYRTAPS 219
+LL GPP GKT LA IA E+ PF KI + + + G S ++ ++ +F AY++ S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 220 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279
V +D+I+ + R ++ L+ + + P +K +L
Sbjct: 127 CVVVDDIERLLDYVPIGPR-FSNLVLQALLVLLKK----APPQGRK------------LL 169
Query: 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339
+IG T+R D + + F I VP+ Q+L L + + IA+
Sbjct: 170 IIGTTSRKDVLQ-EMEMLNAFSTTI--HVPNIATGEQLLEALELLGNFK-DKERTTIAQQ 225
Query: 340 TPG---FVGADLAALANKAGNLAMKRIIDQRKSEL 371
G ++G + + +++ + R +
Sbjct: 226 VKGKKVWIGIKKLLMLIEM---SLQMDPEYRVRKF 257
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 1e-53
Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 14/254 (5%)
Query: 403 DFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL 462
+T ++P+ + + ++ + + +
Sbjct: 8 HHHGSTMDIKPAFGTNQ-EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPL-- 64
Query: 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESE-LAVRTLFSRARTC 521
LL GPP GKT +A +A E+ FI I P+ + + ++ A++ +F A
Sbjct: 65 -VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS 123
Query: 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR-KGVFVIGATNRPDVMDR 580
+ D+++ L G +L LL+ L A + + + +IG T+R DV+
Sbjct: 124 QLSCVVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ- 181
Query: 581 AVLRPGRFGKLLYVP-LPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLS-GADL 638
+ F ++VP + T ++ +LEAL D + TIAQ + + G
Sbjct: 182 EMEMLNAFSTTIHVPNIATGEQ---LLEALELLGNFKD-KERTTIAQQVKGKKVWIGIKK 237
Query: 639 AAMMNEAAMAALED 652
M+ E ++ +
Sbjct: 238 LLMLIEMSLQMDPE 251
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-63
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 65/300 (21%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
RF+D+ G E EE+ E++ L +P+ LG + G+LL GPPG GKT LA A+A E
Sbjct: 9 RFKDMAGNEEAKEEVV-EIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67
Query: 182 TGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRE---- 234
VPF+ + + + G+ GAS +RDLF A + APSI+FIDEIDAI R
Sbjct: 68 AHVPFFSMGGSSFIEMFVGL-GASR--VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 235 ---NLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVD 291
N +RE + + QL+ MD S+ V+V+ ATNRP+ +D
Sbjct: 125 VSGNDERE---QTLNQLLAEMD----------------GFGSENAPVIVLAATNRPEILD 165
Query: 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351
PAL RPGRFDR++++ PD N RV+IL V + +++ +L ++A+ T G GADLA +
Sbjct: 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANI 225
Query: 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411
N+A LA + + + +EA +
Sbjct: 226 INEAALLAGRN--------------------------------NQKEVRQQHLKEAVERG 253
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-61
Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 21/263 (7%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV+++D+ G + + E IV +K+PE Y G + G LL GPPG GKTL+AKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG- 542
A EA F + G + +VG VR LF A+ +P I+F DE+DA+ R G
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 543 -GWVVER--LLNQLLIELDGADKRK-GVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598
ER LNQLL E+DG V V+ ATNRP+++D A++RPGRF + + V P
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 599 PDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAALEDKLISS 657
+ R IL+ + + + V+L +A+ L+GADLA ++NEAA +A ++
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKL--TAGLAGADLANIINEAALLAGRNNQK--- 239
Query: 658 KSSSDVTPFTIKLTHFEQALSKI 680
++ H ++A+ +
Sbjct: 240 ---------EVRQQHLKEAVERG 253
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 5e-63
Identities = 101/261 (38%), Positives = 145/261 (55%), Gaps = 19/261 (7%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
+ DV G D + E +V ++ P +++ G + G L+ GPPG GKTL+AKA+
Sbjct: 7 IKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-G 542
A EA F I G + + +VG VR +F +A+ +PCI+F DE+DA+ +RG G
Sbjct: 66 AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 543 GWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ER LNQ+L+E+DG + +G+ VI ATNRPDV+D A+LRPGRF + + V LP
Sbjct: 126 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAALEDKLISSKS 659
R IL+ R+ P+ +D IA+ SGADLA ++NEAA AA +K
Sbjct: 186 GREQILKVHMRRVPLAPDIDAAIIARG--TPGFSGADLANLVNEAALFAARGNKR----- 238
Query: 660 SSDVTPFTIKLTHFEQALSKI 680
+ + FE+A KI
Sbjct: 239 -------VVSMVEFEKAKDKI 252
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 4e-62
Identities = 104/250 (41%), Positives = 140/250 (56%), Gaps = 33/250 (13%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F D+ G + EE+ E++ L P Q LG + G+L+ GPPG GKT LA AIA E
Sbjct: 10 TFADVAGCDEAKEEVA-ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 182 TGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----- 233
VPF+ IS ++ V GV GAS +RD+F +A + AP I+FIDEIDA+ +R
Sbjct: 69 AKVPFFTISGSDFVEMFVGV-GASR--VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 234 -ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDP 292
+ +RE + + Q++ MD + G ++VI ATNRPD +DP
Sbjct: 126 GGHDERE---QTLNQMLVEMD----------------GFEGNEG-IIVIAATNRPDVLDP 165
Query: 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352
AL RPGRFDR++V+G+PD R QIL V R + + D IAR TPGF GADLA L
Sbjct: 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 225
Query: 353 NKAGNLAMKR 362
N+A A +
Sbjct: 226 NEAALFAARG 235
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-62
Identities = 108/270 (40%), Positives = 138/270 (51%), Gaps = 36/270 (13%)
Query: 105 KGGMGLG---AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGI 161
A L F+D+ G E EELK E++ L +P +G R G+
Sbjct: 18 DSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGV 76
Query: 162 LLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAP 218
LL GPPG GKT LA A+A E VPF S ++ V GV GA+ +RDLF A R AP
Sbjct: 77 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV-GAAR--VRDLFETAKRHAP 133
Query: 219 SIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272
IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMD----------------GFE 174
Query: 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QIL + R + D
Sbjct: 175 KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD 233
Query: 333 LVKIARSTPGFVGADLAALANKAGNLAMKR 362
L +A+ TPGFVGADL L N+A LA +
Sbjct: 234 LALLAKRTPGFVGADLENLLNEAALLAARE 263
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-62
Identities = 102/243 (41%), Positives = 139/243 (57%), Gaps = 7/243 (2%)
Query: 415 SRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGC 474
SR + P V ++DV G + + E IV +K P + E G + G LL GPPG
Sbjct: 26 SRARVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGV 84
Query: 475 GKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDAL 534
GKT +A+AVA EA FI G + + +VG VR LF A+ +PCI+F DE+DA+
Sbjct: 85 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144
Query: 535 TTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
KRG GG ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF +
Sbjct: 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAAL 650
+ + P R IL AR KP+ + VDL +A+ GADL ++NEAA +AA
Sbjct: 205 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR--TPGFVGADLENLLNEAALLAAR 262
Query: 651 EDK 653
E +
Sbjct: 263 EGR 265
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-62
Identities = 100/234 (42%), Positives = 136/234 (58%), Gaps = 7/234 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P V ++DV G + + E IV +K P + E G + G LL GPPG GKT +A+AV
Sbjct: 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 69
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-G 542
A EA FI G + + +VG VR LF A+ +PCI+F DE+DA+ KRG G
Sbjct: 70 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129
Query: 543 GWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF + + + P
Sbjct: 130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA-MAALEDK 653
R IL AR KP+ + VDL +A+ GADL ++NEAA +AA E +
Sbjct: 190 GREQILRIHARGKPLAEDVDLALLAKR--TPGFVGADLENLLNEAALLAAREGR 241
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 6e-62
Identities = 114/296 (38%), Positives = 144/296 (48%), Gaps = 65/296 (21%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F+D+ G E EELK E++ L +P +G R G+LL GPPG GKT LA A+A E
Sbjct: 14 TFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72
Query: 182 TGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----- 233
VPF S ++ V GV GA+ +RDLF A R AP IVFIDEIDA+ KR
Sbjct: 73 ARVPFITASGSDFVEMFVGV-GAAR--VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129
Query: 234 -ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDP 292
N +RE + + QL+ MD + ++V+ ATNRPD +DP
Sbjct: 130 GGNDERE---QTLNQLLVEMD----------------GFEKDTA-IVVMAATNRPDILDP 169
Query: 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352
AL RPGRFDR+I + PD R QIL + R + DL +A+ TPGFVGADL L
Sbjct: 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 229
Query: 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEAT 408
N+A LA + R ITM D EEA
Sbjct: 230 NEAALLAARE--------------------------------GRRKITMKDLEEAA 253
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 8e-60
Identities = 121/295 (41%), Positives = 154/295 (52%), Gaps = 65/295 (22%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F+D+GG E +EELK EV+ L P +G R GILL GPPG GKT LA A+A E
Sbjct: 14 TFKDVGGAEEAIEELK-EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 182 TGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----- 233
VPF+ IS ++ V GV GA+ +RDLF++A AP IVFIDEIDA+ R
Sbjct: 73 ANVPFFHISGSDFVELFVGV-GAAR--VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 234 -ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDP 292
+ +RE + + QL+ MD DSK G ++V+ ATNRPD +DP
Sbjct: 130 GGHDERE---QTLNQLLVEMD----------------GFDSKEG-IIVMAATNRPDILDP 169
Query: 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352
AL RPGRFD++IV+ PD R +IL + TRN + +L IA+ TPGFVGADL L
Sbjct: 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229
Query: 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEA 407
N+A LA + R ITM DFEEA
Sbjct: 230 NEAALLAARE--------------------------------GRDKITMKDFEEA 252
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 8e-58
Identities = 107/263 (40%), Positives = 150/263 (57%), Gaps = 23/263 (8%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
V ++DVGG + E +V +K P ++ G + G LL GPPG GKTL+A+AV
Sbjct: 11 KRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK-EG 542
A EA F HI G + + +VG VR LF++A+ +PCI+F DE+DA+ RG G
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 543 GWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ER LNQLL+E+DG D ++G+ V+ ATNRPD++D A+LRPGRF K + V P
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSK--FCENLSGADLAAMMNEAA-MAALEDKLISS 657
R ILE R KP+ + V+L IA+ F GADL ++NEAA +AA E +
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRTPGF----VGADLENLVNEAALLAAREGRD--- 242
Query: 658 KSSSDVTPFTIKLTHFEQALSKI 680
I + FE+A+ ++
Sbjct: 243 ---------KITMKDFEEAIDRV 256
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 2e-59
Identities = 116/315 (36%), Positives = 146/315 (46%), Gaps = 68/315 (21%)
Query: 105 KGGMGLG---AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGI 161
A L F+D+ G E EELK E++ L +P +G R G+
Sbjct: 9 DSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGV 67
Query: 162 LLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS---GVSGASEENIRDLFSKAYRTAP 218
LL GPPG GKT LA A+A E VPF S ++ V GV GA+ +RDLF A R AP
Sbjct: 68 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV-GAAR--VRDLFETAKRHAP 124
Query: 219 SIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272
IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 125 CIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMD----------------GFE 165
Query: 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QIL + R + D
Sbjct: 166 KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD 224
Query: 333 LVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPE 392
L +A+ TPGFVGADL L N+A LA +
Sbjct: 225 LALLAKRTPGFVGADLENLLNEAALLAARE------------------------------ 254
Query: 393 EMERLTITMTDFEEA 407
R ITM D EEA
Sbjct: 255 --GRRKITMKDLEEA 267
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-57
Identities = 104/263 (39%), Positives = 144/263 (54%), Gaps = 23/263 (8%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P V ++DV G + + E IV +K P + E G + G LL GPPG GKT +A+AV
Sbjct: 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK-EG 542
A EA FI G + + +VG VR LF A+ +PCI+F DE+DA+ KRG G
Sbjct: 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 144
Query: 543 GWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF + + + P
Sbjct: 145 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 204
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSK--FCENLSGADLAAMMNEAA-MAALEDKLISS 657
R IL AR KP+ + VDL +A+ F GADL ++NEAA +AA E +
Sbjct: 205 GREQILRIHARGKPLAEDVDLALLAKRTPGF----VGADLENLLNEAALLAAREGRR--- 257
Query: 658 KSSSDVTPFTIKLTHFEQALSKI 680
I + E+A ++
Sbjct: 258 ---------KITMKDLEEAADRV 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 2e-19
Identities = 106/686 (15%), Positives = 202/686 (29%), Gaps = 196/686 (28%)
Query: 2 HLEDEHVKRRRQTDHDLPSTSSSTSS--SSEEEDGVSTSEDAV------------YGEKV 47
ED V + D S S EE D + S+DAV E++
Sbjct: 24 VFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 48 EPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGG 107
+F ++ +LR +Y + E+ + I+ + + ++ + +V
Sbjct: 79 VQKF--VEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--- 131
Query: 108 MGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPP 167
R Q + L EL RP +L+ G
Sbjct: 132 -------------SRLQPYLKLRQALLEL-------------------RPAKNVLIDGVL 159
Query: 168 GCGKTKLAHAIANETGV----PF--YKISATEVVSGVSGASEENIRDLFSKAYRTAPSIV 221
G GKT +A + V F + ++ S E ++ L +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQI--DPNWTS 215
Query: 222 FIDEIDAIASKRENLQREMERRIVT-QLMTC---MDE--SHRLVQPGDQKSKSDASDSKP 275
D I + ++Q E+ R + + C + + + + K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-------- 267
Query: 276 GYVLVIGATNRP----DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331
+L+ T R D + A D + PDE S+L + L
Sbjct: 268 --ILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCR-PQ 316
Query: 332 DLVKIARST-P---GFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQ 387
DL + +T P + + N K + + + + +S+ + +R+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAE-YRK 373
Query: 388 --------P---WLPEE-MERLTITMTDFEE---ATKMVQPS----SRREGFSAIPNVKW 428
P +P + + + + K+ + S +E +IP++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY- 432
Query: 429 EDVGGLDYLRHEFDRY-----IVRRIKFPEEY--EEFGVDLETGFLLYGPPGCGKTLIAK 481
L+ + Y IV P+ + ++ + Y
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FY------------ 474
Query: 482 AVANEAGANFI--HIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK-R 538
+ I H+K E + TLF +F D L K R
Sbjct: 475 --------SHIGHHLKNIEHPERM---------TLFRM--------VFLD-FRFLEQKIR 508
Query: 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL----RPG------RF 588
W + L +L K ++ + + + A+L + ++
Sbjct: 509 HDSTAWNASGSILNTLQQL---KFYKP-YICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 589 GKLLYVPLPTPDERGLILEA---LAR 611
LL + L DE + EA + R
Sbjct: 565 TDLLRIALMAEDE-AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 4e-10
Identities = 82/535 (15%), Positives = 147/535 (27%), Gaps = 194/535 (36%)
Query: 189 ISATEVVSGV-SGASEENIRDLFSKAYRTAPSIV--FIDEIDA-----IAS--KRENLQR 238
+S E+ + S + LF +V F++E+ + S K E Q
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALR--- 295
M R+ + D + Q V +R LR
Sbjct: 106 SMMTRM---YIEQRDRLYNDNQV-----------FAKYNV------SRLQPYL-KLRQAL 144
Query: 296 ---RPGRFDREIVL-GVPDENARVQILSVLTRNLRVEGSFDL----VKIAR-STPGFVGA 346
RP + +++ GV L V + +V+ D + + ++P
Sbjct: 145 LELRPAKN---VLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPE---T 197
Query: 347 DLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEE 406
L L + ID + S +S + + E+ RL + +E
Sbjct: 198 VLEMLQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQ-----AELRRL-LKSKPYEN 245
Query: 407 ATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGF 466
L L + + F +L
Sbjct: 246 C--------------------------LLVLLNVQNAKAWN--AF---------NL---- 264
Query: 467 LLYGPPGCGKTLIA---KAVANEAGAN-------------FIHIKGPELLNKYVGESELA 510
C K L+ K V + A + LL KY+
Sbjct: 265 ------SC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--- 314
Query: 511 VRTLFSRARTCSPCIL---------------FFDEV--DALTTKRGKEGGWVVERLLNQL 553
+ L T +P L + V D LTT ++E LN L
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--------IIESSLNVL 366
Query: 554 LIELDGADKRK-----GVFVIGATNRPDV-MDRAVLRPGRFGKLLYVPLPTPDERGLILE 607
+ A+ RK VF P + +L L++ + D +++
Sbjct: 367 ----EPAEYRKMFDRLSVF------PPSAHIPTILL------SLIWFDVIKSDVM-VVVN 409
Query: 608 -----ALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657
+L K+P + ++ + +I +L + AL ++
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYL----------ELKVKLEN--EYALHRSIVDH 452
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 1e-17
Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 31/270 (11%)
Query: 401 MTD--FEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEF 458
MTD + ++ G + ++ GL ++ + ++
Sbjct: 1 MTDAATAPTSIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRE-TAALLLVERARQKL 59
Query: 459 GVDLETG---FLLYGPPGCGKTLIAKAVANE-------AGANFIHIKGPELLNKYVGESE 508
G+ ET G PG GKT +A +A + + + +L+ +Y+G +
Sbjct: 60 GLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119
Query: 509 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568
+ + RA +LF DE L + + LL + + + V
Sbjct: 120 PKTKEVLKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVM---ENNRDDLV 171
Query: 569 IGATNRPDVMDR-AVLRPG---RFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHT- 623
+ D M+ PG R + P + +E I + + + + T
Sbjct: 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETA 231
Query: 624 ----IAQSKFCENLS-GADLAAMMNEAAMA 648
I + + + + ++ A +
Sbjct: 232 LRAYIGLRRNQPHFANARSIRNALDRARLR 261
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 3e-14
Identities = 45/306 (14%), Positives = 97/306 (31%), Gaps = 66/306 (21%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAG---ILLYGPPGCGKTKLAHAIA 179
++L G++ V + ++ E L + Q LG+ + G PG GKT +A +A
Sbjct: 30 DRELIGLKPVKDRIR-ETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 180 NET-------GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232
++ ++V G + +++ +A ++FIDE +
Sbjct: 89 GLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLY-- 143
Query: 233 RENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---A 289
R + +R+ + + L+ M+ + + V++ G +R +
Sbjct: 144 RPDNERDYGQEAIEILLQVMENNRDDLV-----------------VILAGYADRMENFFQ 186
Query: 290 VDPALRRPGRFDREIVLGV--PDENARVQILSVLTRNLRVEGSF-----DLVKIARSTPG 342
+P R R I +E + + +N ++ + + R+ P
Sbjct: 187 SNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPH 244
Query: 343 FV-GADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITM 401
F + ++A R+ L TI
Sbjct: 245 FANARSIRNALDRARLRQANRLFTASSGPLDAR--------------------ALSTIAE 284
Query: 402 TDFEEA 407
D +
Sbjct: 285 EDIRAS 290
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-16
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 304 IVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRI 363
P+E AR+ IL + +R + + +L KIA PG GA++ + +AG A++
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE- 64
Query: 364 IDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414
R+ +T DFE A V
Sbjct: 65 -------------------------------RRVHVTQEDFEMAVAKVMQK 84
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-13
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 593 YVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL-E 651
+ P + R IL+ +RK + ++L IA + SGA++ + EA M AL E
Sbjct: 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRE 64
Query: 652 DKLISSKSSSDVTPFTIKLTHFEQALSKISPSVS 685
++ + FE A++K+ S
Sbjct: 65 RRV------------HVTQEDFEMAVAKVMQKDS 86
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 5e-15
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 32/106 (30%)
Query: 309 PDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRK 368
P+E AR+ IL + +R + + +L KIA PG GA++ + +AG A++
Sbjct: 3 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------ 56
Query: 369 SELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414
R+ +T DFE A V
Sbjct: 57 --------------------------RRVHVTQEDFEMAVAKVMQK 76
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 2e-12
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL-EDK 653
P P + R IL+ +RK + ++L IA+ SGA++ + EA M AL E +
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAEL--MPGASGAEVKGVCTEAGMYALRERR 58
Query: 654 LISSKSSSDVTPFTIKLTHFEQALSKISPSVS 685
+ + FE A++K+ S
Sbjct: 59 V------------HVTQEDFEMAVAKVMQKDS 78
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 8e-15
Identities = 55/255 (21%), Positives = 87/255 (34%), Gaps = 24/255 (9%)
Query: 108 MGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPP 167
GLG +E G L G E+ E + ++ + + +LL GPP
Sbjct: 22 KGLGLDE-SGLAKQAASGLVGQENAREACGV-IVELIKSKK-------MAGRAVLLAGPP 72
Query: 168 GCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRT---APSIVF 222
G GKT LA AIA E G VPF + +EV S + E + + F +A V+
Sbjct: 73 GTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKT-EVLMENFRRAIGLRIKETKEVY 131
Query: 223 IDEIDAIASKR-ENLQREMERRI--VTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279
E+ + EN + I V + + +L + G V+
Sbjct: 132 EGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVI 191
Query: 280 VI-GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIAR 338
I + FD E VP V + +++ + DL
Sbjct: 192 YIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANA 248
Query: 339 STPGFVGADLAALAN 353
G G D+ ++
Sbjct: 249 RPQG--GQDILSMMG 261
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 48/210 (22%), Positives = 77/210 (36%), Gaps = 38/210 (18%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGAN--FIHIKGPELLNKYVGESELAVRTLFSRA---R 519
LL GPPG GKT +A A+A E G+ F + G E+ + + ++E + F RA R
Sbjct: 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGLR 123
Query: 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK--------------- 564
++ EV LT + + ++ ++I L A K
Sbjct: 124 IKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183
Query: 565 ------GVFVIGATNRPDVMDRAVLRPGRFGKLL--YVPLPTPDERGLILEALARKKPID 616
+++ + R F YVPLP D + +KK I
Sbjct: 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGD--------VHKKKEII 235
Query: 617 DSVDLHTIAQSKFCENLSGADLAAMMNEAA 646
V LH + + G D+ +MM +
Sbjct: 236 QDVTLHDLDVAN-ARPQGGQDILSMMGQLM 264
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-13
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA--- 217
++L+GPPG GKT LA IA +ISA V SGV IR+ +A +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA--VTSGVK-----EIREAIERARQNRNAG 105
Query: 218 -PSIVFIDEI 226
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHI----KGPELLNKYVGESELAVRTLFSRARTC 521
+L+GPPG GKT +A+ +A A A+ I G V E +R RAR
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSG-------VKE----IREAIERARQN 101
Query: 522 ----SPCILFFDEV 531
ILF DEV
Sbjct: 102 RNAGRRTILFVDEV 115
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-13
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 32/98 (32%)
Query: 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKS 369
D R I + ++++ VE I+R P GA+L ++ +AG A++
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------- 54
Query: 370 ELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEA 407
R T DF +A
Sbjct: 55 -------------------------RRKVATEKDFLKA 67
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-09
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 600 DERG--LILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649
D G I ++ ++ + I+ + C N +GA+L ++ EA M A
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFA 51
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 32/109 (29%)
Query: 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKS 369
D + I S +T + + DL GAD+ ++ ++G LA++
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE------- 54
Query: 370 ELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE 418
R + DFE+A K V +E
Sbjct: 55 -------------------------NRYIVLAKDFEKAYKTVIKKDEQE 78
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 600 DERG--LILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657
D R LI + K + + VDL + +SGAD+ ++ E+ M A+ +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVAR--PDKISGADINSICQESGMLAVRENRY-- 57
Query: 658 KSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYK 693
+ FE+A + E + + YK
Sbjct: 58 ---------IVLAKDFEKAYKTVIKK-DEQEHEFYK 83
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-11
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL-EDKLISSKS 659
ER LI +A K + DL ++ ++LSGA +AA+M EA + A+ +++ +
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRN--DSLSGAVIAAIMQEAGLRAVRKNRYV---- 55
Query: 660 SSDVTPFTIKLTHFEQALSK-ISPSVSELQIQRYK 693
I + E+A + + + + YK
Sbjct: 56 --------ILQSDLEEAYATQVKTDNTVDKFDFYK 82
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 32/105 (30%)
Query: 314 RVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSG 373
R I + + + DL + GA +AA+ +AG A+++
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----------- 51
Query: 374 NSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE 418
R I +D EEA +
Sbjct: 52 ---------------------NRYVILQSDLEEAYATQVKTDNTV 75
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 26/163 (15%)
Query: 122 RFQDLGGMESVLEEL----KMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHA 177
Q + G + + +L + G +LYGPPG GKT AH
Sbjct: 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 96
Query: 178 IANETGVPFYKISAT-----EVVSGV--SGASEENIRDLFSKAYRTA-----PSIVFIDE 225
+A E G + +A+ +++ + ++ F ++ +DE
Sbjct: 97 VAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 156
Query: 226 IDAIASK-RENLQREME------RRIVTQLMTCMDESHRLVQP 261
+D ++ R + + + ++ + C + + ++P
Sbjct: 157 VDGMSGGDRGGVGQLAQFCRKTSTPLI---LICNERNLPKMRP 196
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 6e-09
Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 42/251 (16%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHI-----KGPELLNKYVGESELAVRTLFSRARTC 521
+LYGPPG GKT A VA E G + + + LLN V + L ++ +
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNA-LDNMSVVGYFKHN 139
Query: 522 S--------PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573
++ DEVD ++ G GG V +L ++ +I N
Sbjct: 140 EEAQNLNGKHFVIIMDEVDGMSG--GDRGG--VGQLAQFC--------RKTSTPLILICN 187
Query: 574 RPDVMDRAVLRP--GRFGKLLYVPLPTPDERGLILEALARKK-PIDDSVDLHTIAQSKFC 630
+ +RP + + + ++ R+K +D +V + + Q
Sbjct: 188 --ERNLPK-MRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQ---- 239
Query: 631 ENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTH---FEQALSKISPSVSEL 687
+ D+ ++N + + K I+ ++ ++++ K F+ A + +
Sbjct: 240 --TTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSD 297
Query: 688 QIQRYKTLSET 698
R TL++
Sbjct: 298 IGSRNFTLNDK 308
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 5e-09
Identities = 48/262 (18%), Positives = 85/262 (32%), Gaps = 42/262 (16%)
Query: 467 LLYGPPGCGKTLIAKAVANE------AGANFIHIKGPELLNKYVGESELAVRTLFSRART 520
+YG G GKT + K V ++ ++I ++ Y ++L T
Sbjct: 49 FIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFT 108
Query: 521 C------------------SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK 562
S ++ DE+DA K + +L +L ++
Sbjct: 109 GLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDD-------ILYKLS-RINSEVN 160
Query: 563 RKGVFVIGATNRPDVMDRAVLR-PGRFG-KLLYVPLPTPDERGLILEALARKKPIDDSVD 620
+ + IG TN +D R + + P +E IL A+ +
Sbjct: 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP 220
Query: 621 LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680
+ I K C A LAA + A AL+ +S + + + +K + A +I
Sbjct: 221 DNVI---KLC-----AALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272
Query: 681 SPSVSELQIQRYKTLSETFKAA 702
I S+ A
Sbjct: 273 ERDRVRDIILTLPFHSKLVLMA 294
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENIRDLFSKAYRTAP 218
IL+ GP G GKT++A +A PF K+ AT+ G G ++I + + A
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 111
Query: 219 S------IVFIDEIDAIASKRENLQREMERRIVTQ 247
IVFIDEID I K E ++ R V +
Sbjct: 112 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQR 146
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 26/131 (19%)
Query: 439 HEFDRYIV-----------------RRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAK 481
E D++I+ RR++ E L+ GP G GKT IA+
Sbjct: 11 SELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH--EVTPKNILMIGPTGVGKTEIAR 68
Query: 482 AVANEAGANFIHIKGPELL-NKYVGESELAV------RTLFSRARTCSPCILFFDEVDAL 534
+A A A FI ++ + YVG+ ++ + I+F DE+D +
Sbjct: 69 RLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
Query: 535 TTKRGKEGGWV 545
K G V
Sbjct: 129 CKKGEYSGADV 139
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENI-RDLFSKA-Y--- 214
ILL GP G GKT +A +A +P AT + +G G ENI L + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 215 RTAPSIVFIDEIDAIASKREN 235
+ IVFIDEID I+ EN
Sbjct: 135 KAQKGIVFIDEIDKISRLSEN 155
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENI-RDLFSKA-Y--- 214
ILL GP G GKT LA +A VPF AT + +G G ENI + L K Y
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 215 RTAPSIVFIDEIDAIASKREN 235
+ IV+ID+ID I+ K +N
Sbjct: 114 KAQRGIVYIDQIDKISRKSDN 134
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRD-------- 208
+L GPPG GKT A A+A + ++ + E+ AS+E +R
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-----NASDERGIDVVRHKIKEFART 95
Query: 209 --LFSKAYRTAPSIVFIDEIDAIASKREN-LQREMER 242
+ ++ I+F+DE DA+ + + L+R ME
Sbjct: 96 APIGGAPFK----IIFLDEADALTADAQAALRRTMEM 128
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 467 LLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPELLNKYVGESEL-AVRT---LFSR 517
L GPPG GKT A A+A + NFI + + E + VR F+R
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-------ERGIDVVRHKIKEFAR 94
Query: 518 ARTCSPC---ILFFDEVDALT 535
I+F DE DALT
Sbjct: 95 TAPIGGAPFKIIFLDEADALT 115
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 160 GILLYGPPGCGKTKLAHAIANE----TGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
G+ G PG GKT LA A G+ Y +++ + +E F K
Sbjct: 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL 99
Query: 216 TAPSIVFIDEI 226
+P ++ +D++
Sbjct: 100 NSP-VLVLDDL 109
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------FIHIKGPELLNKYVGE-SE 508
F + G G PG GKT +A A F +L+ + E
Sbjct: 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT--KDLIFRLKHLMDE 88
Query: 509 LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554
+L D++ + W E L++ ++
Sbjct: 89 GKDTKFLKTVLNSP--VLVLDDLGSERLSD-----WQRE-LISYII 126
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRD-------- 208
+L GPPG GKT A A+A + ++ + E+ AS+E +R
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-----NASDERGIDVVRHKIKEFART 95
Query: 209 --LFSKAYRTAPSIVFIDEIDAIASKREN-LQREMER 242
+ ++ I+F+DE DA+ + + L+R ME
Sbjct: 96 APIGGAPFK----IIFLDEADALTADAQAALRRTMEM 128
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL---------AVRT---L 514
L GPPG GKT A A+A + + G + ++ E+ VR
Sbjct: 42 LFSGPPGTGKTATAIALARD-------LFGENWRDNFI---EMNASDERGIDVVRHKIKE 91
Query: 515 FSRARTCSPC---ILFFDEVDALTT 536
F+R I+F DE DALT
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTA 116
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 24/97 (24%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRD-------- 208
+L GPPG GKT A A+A E ++ + E+ AS+E IR+
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLEL-----NASDERGINVIREKVKEFART 103
Query: 209 --LFSKAYRTAPSIVFIDEIDAIASKREN-LQREMER 242
+ +++ I+F+DE DA+ + L+R ME
Sbjct: 104 KPIGGASFK----IIFLDEADALTQDAQQALRRTMEM 136
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL---------AVRTL--- 514
L GPPG GKT A A+A E + G + ++ EL +R
Sbjct: 50 LFAGPPGVGKTTAALALARE-------LFGENWRHNFL---ELNASDERGINVIREKVKE 99
Query: 515 FSRARTCSPC---ILFFDEVDALT 535
F+R + I+F DE DALT
Sbjct: 100 FARTKPIGGASFKIIFLDEADALT 123
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 35/251 (13%), Positives = 70/251 (27%), Gaps = 26/251 (10%)
Query: 467 LLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELLNKYVGESELAVRTLFSRARTCS 522
L G PG GKT+ + + A F++I G N E+A R
Sbjct: 48 TLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGL 107
Query: 523 PCILFFDEVDALTTKRGK-------EGGWVVERLLNQLLIELDGADKRKG--VFVIGATN 573
F + +R + + +L+ + ADK + ++ +
Sbjct: 108 SRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167
Query: 574 RPDVMDRAVLRPGR--FGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTI------- 624
V++ ++ T D+ IL A+ + S +
Sbjct: 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227
Query: 625 AQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSV 684
+ G D ++ +A + P ++ + E +
Sbjct: 228 GAQTPLDTNRG-DARLAIDILYRSAY---AAQQNGRKHIAPEDVRKSSKEVLFGISEEVL 283
Query: 685 SELQIQRYKTL 695
L + L
Sbjct: 284 IGLPLHEKLFL 294
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 1e-06
Identities = 31/268 (11%), Positives = 71/268 (26%), Gaps = 56/268 (20%)
Query: 470 GPPGCGKTLIAKAVANE---------AGANFIHIKGPELLNKY----------------- 503
G G GKT +AK ++ N Y
Sbjct: 59 GRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR 118
Query: 504 -VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK 562
++ + + ++ DE ++ + + + LL ++ E+ D
Sbjct: 119 GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-RIAAEDLYTLL-RVHEEIPSRDG 176
Query: 563 RKGVFVIGATNRPDVMDRAVLRPGR----FGKLLYVPLPTPDERGLILEALARKKPIDDS 618
+ + + + + + G L++P E ILE A D
Sbjct: 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV 236
Query: 619 VDLHTIAQSKFCENLSGADLAA---------MMNEAAMAALEDKLISSKSSSDVTPFTIK 669
+ + + ++ G D + A A ++
Sbjct: 237 WEPRHL---ELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRD-----------SLS 282
Query: 670 LTHFEQALSKISPSVSELQIQRYKTLSE 697
+A+S+ + + ++ E
Sbjct: 283 EDLVRKAVSENEAASIQTHELEALSIHE 310
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 41/223 (18%), Positives = 66/223 (29%), Gaps = 45/223 (20%)
Query: 467 LLYGPPGCGKTLIAKAVANE-----------AGANFIHIKGPELLNKY------------ 503
L G G GKT ++K + NE ++ E+
Sbjct: 49 LFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLT 108
Query: 504 ------VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557
G + I++ DEVD L +RG + +L QLL
Sbjct: 109 GFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG------DIVLYQLL--- 159
Query: 558 DGADKRKGVFVIGATNRPDVMDRAVLR-PGRFGKLLYVPLPTPDERGLILEALARKKPID 616
+ VI +N +V D R G + ++ IL A I
Sbjct: 160 ---RSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK 216
Query: 617 DSVDLHTIAQ-SKFCENLSGADLAA--MMNEAAMAALEDKLIS 656
+ D ++ + G A ++ AA A +I
Sbjct: 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIR 259
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 15/180 (8%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
L G G GKT ++ I NE + + V N R++ S+
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA----YVNCREVGGTPQAVLSSL 103
Query: 221 VFIDEIDAIASKRENLQREMERRIV----TQLMTCMDESHRLVQ-PGDQKSKSDASDSKP 275
++ NL +++ + + +DE LV+ G
Sbjct: 104 AGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR-SD 162
Query: 276 GYVLVIGATNR---PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332
+ VI +N D ++P + ++ D ILS ++G++D
Sbjct: 163 ANISVIMISNDINVRDYMEPRVL--SSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD 220
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT---A 217
+LL GPPG GKT LAH IA+E I T SG D+ A T
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT---NIHVT------SGPVLVKQGDM--AAILTSLER 102
Query: 218 PSIVFIDEI 226
++FIDEI
Sbjct: 103 GDVLFIDEI 111
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LL GPPG GKT +A +A+E N GP L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 15/70 (21%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAP-- 218
+LL+GPPG GKT LAH IA+E GV +++ SG + E DL A
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNL-RVT--------SGPAIEKPGDL--AAILANSLE 89
Query: 219 --SIVFIDEI 226
I+FIDEI
Sbjct: 90 EGDILFIDEI 99
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LL+GPPG GKT +A +A+E G N GP +
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 151 QWLGVRPMAGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATEVVSGVSGASEENIR 207
++ + M G+ L+G G GKT L AIANE V + E+ + + ++
Sbjct: 47 EYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM 106
Query: 208 DLFSKAYRTAPSIVFIDEI 226
+ + P ++ +D++
Sbjct: 107 NEKLDYIKKVP-VLMLDDL 124
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-VGESELAVRTLFSRART 520
G L+G G GKT + A+ANE + + + PEL + + + +
Sbjct: 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK 115
Query: 521 CSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLL 554
+L D++ G E WV + + +L
Sbjct: 116 VP--VLMLDDL-------GAEAMSSWVRDDVFGPIL 142
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 160 GILLYGPPGCGKTKLAHAIANE----TGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
G+ LYG G GK+ L A+A+E GV + V A A +
Sbjct: 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK 213
Query: 216 TAPSIVFIDEI 226
P ++ +D+I
Sbjct: 214 NVP-VLILDDI 223
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 435 DYLRHEFDRYIVRRIKFPEEY-------EEFGVDLETGFLLYGPPGCGKTLIAKAVANE- 486
Y V E + E++ + G LYG G GK+ + A+A+E
Sbjct: 117 SYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
Query: 487 ---AGANFIHIKGPELLNKY-VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
G + + P S +V+ + +L D++ G E
Sbjct: 177 SEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVP--VLILDDI-------GAEQ 227
Query: 543 G--WVVERLLNQLL 554
WV + +L +L
Sbjct: 228 ATSWVRDEVLQVIL 241
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT---A 217
IL GP G GKT LA+ I+ E I T + E DL A T
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSA---NIKTT------AAPMIEKSGDL--AAILTNLSE 106
Query: 218 PSIVFIDEI 226
I+FIDEI
Sbjct: 107 GDILFIDEI 115
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
L GP G GKT +A ++ E AN P +
Sbjct: 59 LFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Length = 149 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
I ++G G GK+ L A + + + AS + A A
Sbjct: 39 IYVWGEEGAGKSHLLQAWVAQALEAGKN------AAYIDAASMP-----LTDAAFEA-EY 86
Query: 221 VFIDEIDAIASKRE 234
+ +D+++ + ++ +
Sbjct: 87 LAVDQVEKLGNEEQ 100
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRD-------- 208
+L YGPPG GKT A+A E Y E+ AS++ +R+
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL-----NASDDRGIDVVRNQIKDFAST 103
Query: 209 --LFSKAYRTAPSIVFIDEIDAIASKREN-LQREMER 242
+FSK ++ ++ +DE DA+ + +N L+R +ER
Sbjct: 104 RQIFSKGFK----LIILDEADAMTNAAQNALRRVIER 136
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRD---LFSKA 213
+++ G PG GKT H +A+E Y E+ AS++ +R+ F++
Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL-----NASDDRGIDVVRNQIKHFAQK 99
Query: 214 YRTAPS----IVFIDEIDAIASKREN-LQREMER 242
P IV +DE D++ + + L+R ME
Sbjct: 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL 133
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 47/269 (17%), Positives = 82/269 (30%), Gaps = 51/269 (18%)
Query: 467 LLYGPPGCGKTLIAKAVANE---------AGANFIHIKGPELLNKYVGESELAVRTLFSR 517
LLYG G GKT +A+ V I++ Y S +A
Sbjct: 48 LLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV 107
Query: 518 ARTC------------------SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559
T I+ DE+D L + G + LL ++
Sbjct: 108 PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGG------QDLLYRITRINQE 161
Query: 560 ADKRKGVFVIGATNRPDVMDR------AVLRPGRFGKLLYVPLPTPDERGLILEALARKK 613
R V ++G TN ++ + L P T + ILE A +
Sbjct: 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVEL----VFPPYTAPQLRDILETRAEEA 217
Query: 614 PIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHF 673
+D + C A LAA + A AL+ ++ + + ++ H
Sbjct: 218 FNPGVLDPDVV---PLC-----AALAAREHGDARRALDLLRVAGEIAERRREERVRREHV 269
Query: 674 EQALSKISPSVSELQIQRYKTLSETFKAA 702
A ++I ++ ++ +
Sbjct: 270 YSARAEIERDRVSEVVRTLPLHAKLVLLS 298
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Length = 242 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
I L+GP G+T L HA + +I + +
Sbjct: 55 IYLWGPVKSGRTHLIHAACA------RANELERRSFYIPLGIHASISTALLEGLEQF-DL 107
Query: 221 VFIDEIDAIASKRENLQRE 239
+ ID++DA+A +
Sbjct: 108 ICIDDVDAVAGH-PLWEEA 125
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 9e-04
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL G PG GK+ IA+A+AN G +H + L Y+ + S +
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFHS-DDLWGYIKHGRIDPWLPQSHQQN-----R 66
Query: 527 FFDEVDALTTKRGKEGGW--VVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584
++ A R + G+ +++ ++ + A R +++ T + ++R + R
Sbjct: 67 MIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR 126
Query: 585 PGR 587
G
Sbjct: 127 GGD 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 100.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 100.0 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.97 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.97 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.97 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.97 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.97 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.97 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.97 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.96 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.96 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.96 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.96 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.96 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.96 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.96 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.95 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.95 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.94 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.93 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.89 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.88 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.87 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.83 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.81 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.81 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.81 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.81 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.8 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.8 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.79 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.78 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.76 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.76 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.76 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.75 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.75 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.74 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.74 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.74 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.71 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.71 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.7 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.7 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.69 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.68 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.66 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.66 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.66 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 99.66 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.66 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.66 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.65 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.65 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.65 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.65 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.64 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.64 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.64 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.63 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.63 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.63 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.63 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.62 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.62 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.61 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.61 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.61 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.61 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.6 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.6 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.6 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.6 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.59 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.59 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.58 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.58 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.58 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.57 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.57 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.57 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.56 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.55 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.55 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.55 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.55 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.54 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.54 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.53 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.52 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.52 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.52 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.52 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.52 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.5 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.5 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.5 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.5 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.5 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.48 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.46 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.46 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.46 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.45 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.44 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.44 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.43 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.41 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.4 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.4 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.4 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.4 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 99.38 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.37 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.36 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.36 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.33 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.31 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.31 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.26 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.24 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.24 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.23 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 99.22 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 99.2 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.19 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.18 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.11 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.11 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 99.04 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.0 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.98 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.93 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.88 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.86 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.84 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.84 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.83 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.76 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.75 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.74 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.72 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.68 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.64 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 98.64 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.6 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 98.6 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.59 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.57 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.53 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.51 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.47 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.45 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.44 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.43 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 98.42 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.41 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.41 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.4 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.38 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.28 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 98.25 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.13 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.07 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.03 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 97.87 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.87 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 97.86 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.84 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.82 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.81 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.79 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.79 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.7 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.68 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.66 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.65 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.61 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.56 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.55 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.55 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.53 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.52 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.51 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.5 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.49 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.48 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.47 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.47 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.45 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.45 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.44 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.42 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.41 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.4 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.38 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.37 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.34 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.33 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.32 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.32 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.32 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.32 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.31 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.31 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.31 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.3 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.3 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.3 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.28 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.28 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.27 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.26 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.25 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.25 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.25 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.24 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.21 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.2 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.2 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.19 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.18 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.17 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.17 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.17 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.17 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.17 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.16 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.16 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.14 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.14 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.13 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.13 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.13 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.13 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.13 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.12 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.1 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.1 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.09 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.09 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.08 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.08 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.07 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.07 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.07 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.06 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.06 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.03 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.03 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.02 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.02 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.02 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.02 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.01 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.99 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.99 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.99 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.98 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.98 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.98 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.98 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.98 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.97 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.97 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.97 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 96.97 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.96 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.96 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.95 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.95 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.95 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.94 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.93 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.93 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.92 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.92 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.91 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.91 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.91 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.91 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.9 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.9 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.9 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.89 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.89 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.89 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.88 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.88 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.88 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.88 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.88 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.88 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.87 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.87 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.87 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.87 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.87 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.87 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.86 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.86 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.85 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.84 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.83 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.83 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.82 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.81 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.81 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.81 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.81 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.8 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.8 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.79 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.79 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.78 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.77 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.77 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.77 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.77 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.77 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.76 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.76 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.76 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.76 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.75 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.75 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.75 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.74 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.73 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.72 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.71 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.68 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.67 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.67 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.67 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.67 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.66 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.64 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.63 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.63 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.62 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.61 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.61 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.61 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.61 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.61 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.6 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.6 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.6 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.6 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.58 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.58 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.57 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.56 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.55 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.55 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.55 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.55 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.54 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.54 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.53 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.53 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.52 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.52 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.52 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.51 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.51 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.5 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.5 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.49 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.49 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.49 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.48 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.47 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.47 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.47 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.46 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.45 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.45 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.44 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.44 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.44 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.43 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.43 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.43 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.42 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.42 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.41 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.41 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.41 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.41 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.39 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.39 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.38 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.38 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.36 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.36 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.36 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.35 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.34 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.33 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.32 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.31 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.31 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.31 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.3 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.29 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.29 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.29 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.28 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.27 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.27 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.27 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.26 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.26 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.24 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.23 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.22 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.22 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.22 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.21 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.2 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.19 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.19 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.18 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.17 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.16 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.16 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.16 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.15 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.15 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.13 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.11 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.11 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.09 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.09 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.08 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.08 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.07 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.06 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.06 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.06 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.05 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.03 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.03 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.02 |
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-93 Score=819.52 Aligned_cols=550 Identities=45% Similarity=0.783 Sum_probs=452.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|++|.+.+..|+.+|++|..+|+.++++||||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|+++..++.+|+.|....|+||||||||.+++.++....+..++++++|+.+|+++.. .++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-----------------~~~ 340 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------------RAH 340 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-----------------GGC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-----------------cCC
Confidence 999999999999999999999999999999999988777677788999999999998643 345
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|+||||||.++.|||+++|+|||++.|+++.|+.++|.+||+.++++.....+.++..+|..|+||+++||..+|++|..
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 358 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.++++........ ......+......++.+||..++..++|+..++.....|++.|++++|++++
T Consensus 421 ~A~~r~~~~i~~~---------------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~ 485 (806)
T 3cf2_A 421 QAIRKKMDLIDLE---------------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp HHHHHHHHHGGGT---------------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHH
T ss_pred HHHHhcccccccc---------------ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHH
Confidence 9998876543211 1122233445678999999999999999999999889999999999999999
Q ss_pred hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHH
Q 045279 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 438 k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
|+.|.+.+.+++++++.|.++|..+++|+|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|..
T Consensus 486 k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 518 ARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|+...||||||||+|++++.|+.+ .+...++++++||++||+.....+++||+|||+|+.||+|++||||||++|+|
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 999999999999999999998643 34567899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--------------CC
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK--------------SS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~--------------~~ 660 (702)
|+|+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++...... ..
T Consensus 646 ~lPd~~~R~~il~~~l~~~~~~~~~dl~~la--~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp -----CHHHHTTTTTSSCC--CCC------------------CHHHHHHHHHHHHHHHHHC-------------------
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccc
Confidence 9999999999999999999999999999999 6789999999999999999999998764321 01
Q ss_pred CCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 661 SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.....+.|+++||++|+++++||++.+++++|++|.++|+.
T Consensus 724 ~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp ----CCC----CCTTTC---------------CCCC-----
T ss_pred cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 11223579999999999999999999999999999998863
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-52 Score=438.40 Aligned_cols=269 Identities=36% Similarity=0.580 Sum_probs=242.3
Q ss_pred CCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 413 PSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 413 p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
|..........|+++|+||+|++++|+.|++.+.+|+++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+
T Consensus 132 ~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 132 PLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp CCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 33444556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 493 HIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 493 ~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
.++++++.++|+|+++..++.+|..|+...||||||||+|+++++|.... .....+++++||.+||++....+++||
T Consensus 212 ~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 212 RVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp EEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred EEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999886543 235678999999999999999999999
Q ss_pred EecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 570 ~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
+|||+|+.||||++||||||..|+||+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA--~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA--EKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKT 694 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~ 694 (702)
+++.. ..|+++||+.|+.++.+...+..+..++.
T Consensus 370 ir~~~-----------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~ 403 (405)
T 4b4t_J 370 LRERR-----------IHVTQEDFELAVGKVMNKNQETAISVAKL 403 (405)
T ss_dssp HHTTC-----------SBCCHHHHHHHHHHHHHHHTCC-------
T ss_pred HHcCC-----------CCcCHHHHHHHHHHHhCccccccchhHhh
Confidence 98743 27999999999998865443333443333
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=426.32 Aligned_cols=257 Identities=36% Similarity=0.588 Sum_probs=239.9
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|++|+|++++|+.|.+.+.+++++++.|.++|.++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+.++|+|+++..++.+|..|+...||||||||+|+++++|.... .....+.+++||.+||+.....+++||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999985543 346678999999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+.||||++||||||..|+|++|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++...
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA--~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV--TTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999 6799999999999999999999987432
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhcCCCCCHHH
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKISPSVSELQ 688 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~ 688 (702)
.|+++||+.|+.++.++.+++.
T Consensus 410 -----------~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 410 -----------QVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp -----------CBCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------ccCHHHHHHHHHHHhCCCChhh
Confidence 7999999999999877655443
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=425.72 Aligned_cols=263 Identities=35% Similarity=0.556 Sum_probs=239.7
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|++|+|++++|+.|.+.+.+|+++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
++.++|+|+++..++.+|..|+...||||||||+|+++++|...+ .....+++++||.+||++....+++||+|||+
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 999999999999999999999999999999999999999885543 34567889999999999999999999999999
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+.||||++||||||..|+||+|+.++|.+||+.++++.+...+++++.+| ..|+||||+||+++|++|++.|+++..
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA--~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV--KMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH--HTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999 679999999999999999999998743
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYK 693 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 693 (702)
. .|+.+||..|+.++.++...+....|+
T Consensus 408 ~-----------~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 408 D-----------HINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp S-----------SBCHHHHHHHHHHHHHTCC--------
T ss_pred C-----------CCCHHHHHHHHHHHHhccCcccchhhh
Confidence 2 799999999999998877665544444
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-49 Score=422.74 Aligned_cols=257 Identities=36% Similarity=0.595 Sum_probs=240.9
Q ss_pred CccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 417 ~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
.......|+++|++|+|++.+|+.|.+.+.+|+.+++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+++.++|+|+++..++.+|..|+...||||||||+|+++++|..... ....+++++||.+||++....+++||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999865533 356788999999999999889999999999
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+|+.||||++||||||..|+||+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA--~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA--RSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999999999999875
Q ss_pred HhhcCCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 654 LISSKSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 654 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
.. .|+++||..|+.+++|+.++
T Consensus 407 ~~-----------~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 QS-----------SVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp CS-----------SBCHHHHHHHHHSCSSSCCC
T ss_pred CC-----------CcCHHHHHHHHHHHhCCCCc
Confidence 32 79999999999999998764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=421.61 Aligned_cols=263 Identities=36% Similarity=0.611 Sum_probs=236.9
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|+++|+||+|++++|+.|++.+.+++.+++.|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
.++|+|+++..++.+|..|+...||||||||+|.++++|..... ....+.++++|.+|++.....+++||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999865433 356788999999999999999999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.||+|++||||||+.|+|++|+.++|.+||+.++++.++..+++++.+| ..|+||+|+||+++|++|++.|+++...
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA--~~T~GfSGADI~~l~~eAa~~Air~~~~- 436 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARRK- 436 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHTCS-
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999999999999999999 6799999999999999999999987532
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSE-LQIQRYKTL 695 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~~~~~~-~~~~~~~~~ 695 (702)
.|+.+||+.|+.++.+...+ .....|.+|
T Consensus 437 ----------~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 437 ----------VATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp ----------SBCHHHHHHHHHHHHHHHCC----------
T ss_pred ----------ccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 79999999999987543221 234455554
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=419.55 Aligned_cols=259 Identities=39% Similarity=0.623 Sum_probs=238.9
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|+||+|++.+|+.|.+.+.+++.+++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+.++|+|+++..++.+|..|+...||||||||+|.+++.|... ......+++++||++|||+....+++||+|||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999999988543 3346688999999999999989999999999999
Q ss_pred CccCccccCCCccceEEEcC-CCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVP-LPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~-~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.||||++||||||..|+|| +|+.++|..||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++..
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA--~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999997 899999999999999999999999999999 678999999999999999999998753
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhh-cCCCCCHHHHH
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSK-ISPSVSELQIQ 690 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~-~~~~~~~~~~~ 690 (702)
. .|+++||++|+.+ ++++.+.+.++
T Consensus 400 ~-----------~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 400 Y-----------VILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp S-----------SBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred C-----------CCCHHHHHHHHHHhhCccCCccHhh
Confidence 2 7999999999976 46655544333
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=378.94 Aligned_cols=252 Identities=35% Similarity=0.576 Sum_probs=229.2
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
......|.++|+||+|++++|++|.+.|.+|+.+|++|..+|+++++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 33445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.+.|.|+++..++.+|..|....||||||||||.+++.+... .+....+++.+||..||++..
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~------------ 284 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET------------ 284 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC------------
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC------------
Confidence 99999999999999999999999999999999999999876432 234557788999999997643
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLA 349 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~ 349 (702)
..+|+||||||.++.||||++|||||+..|+|+.|+.++|.+||+.++++..+..+.++..+|..|+||+|+||.
T Consensus 285 -----~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~ 359 (405)
T 4b4t_J 285 -----SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK 359 (405)
T ss_dssp -----CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH
T ss_pred -----CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH
Confidence 345999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 350 ~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
++|++|+..++++ ....|+.+||..|+..+.+
T Consensus 360 ~l~~eA~~~Air~--------------------------------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 360 GVCTEAGMYALRE--------------------------------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHHT--------------------------------TCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------------------------------CCCCcCHHHHHHHHHHHhC
Confidence 9999999888663 1136889999999987654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=372.27 Aligned_cols=251 Identities=37% Similarity=0.619 Sum_probs=228.0
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....||||||||+|.++..+.... +....+.+..||..||+...
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--------------- 318 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--------------- 318 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC---------------
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC---------------
Confidence 999999999999999999999999999999999998774432 23456778889999987543
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||.++.||||++|||||+..|+|+.|+.++|.+||+.++++..+..+.++..+|..|+||+|+||.++|
T Consensus 319 --~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 319 --RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp --SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred --CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 355999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|+..++++. ...|+.+||..|++.+.++.
T Consensus 397 ~eA~~~Air~~--------------------------------~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 397 TEAGLLALRER--------------------------------RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHTT--------------------------------CSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHhCCC
Confidence 99998887631 13588999999998776543
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=371.98 Aligned_cols=252 Identities=36% Similarity=0.585 Sum_probs=229.2
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|.++..++.+|..|....||||||||+|.++..+..... ....+.+..||..|+++..
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--------------- 317 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--------------- 317 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS---------------
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC---------------
Confidence 9999999999999999999999999999999999988754332 3445677889999987543
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||.++.||||++|||||++.|+|+.|+.++|.+||+.++++..+..+.++..+|+.|+||+|+||.++|
T Consensus 318 --~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~ 395 (434)
T 4b4t_M 318 --DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT 395 (434)
T ss_dssp --SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred --CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
++|+..++++- ...|+.+||..++..++|+..
T Consensus 396 ~eA~~~a~r~~--------------------------------~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 396 VEAGMIALRNG--------------------------------QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHHT--------------------------------CSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHcC--------------------------------CCCcCHHHHHHHHHHHhCCCC
Confidence 99998887641 135889999999999887643
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=373.04 Aligned_cols=253 Identities=36% Similarity=0.596 Sum_probs=228.7
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+.|.|+++..++.+|..|....||||||||+|.++..+... .+....+.+..||..|++...
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-------------- 317 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-------------- 317 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--------------
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--------------
Confidence 999999999999999999999999999999999999876432 233456778899999997543
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++|+||+|||.++.||||++|||||+..|+|+.|+.++|.+||+.++++.....+.++..+|..|+||+|+||.++
T Consensus 318 ---~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 318 ---LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp ---TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHH
T ss_pred ---CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|++|+..++++- ...|+.+||..++..+.+...
T Consensus 395 ~~eA~~~air~~--------------------------------~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 395 ATEAGFFAIRDD--------------------------------RDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHHHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcC--------------------------------CCCCCHHHHHHHHHHHHhccC
Confidence 999998886531 135889999999988766543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=366.80 Aligned_cols=248 Identities=35% Similarity=0.574 Sum_probs=225.5
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.+.|.++|+||+|++++|++|.+.|.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....||||||||+|.++..+... ......+.+..+|..|++...
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------------- 345 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--------------- 345 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC---------------
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC---------------
Confidence 99999999999999999999999999999999999877442 234456777888888886532
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||+++.||||++|||||++.|+|+.|+.++|.+||+.++++..+..+.++..+|+.|+||+|+||.++|
T Consensus 346 --~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 --RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp --TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred --CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
++|+..|+++- ...++.+||..+++.+.
T Consensus 424 ~eAa~~Air~~--------------------------------~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 424 TEAGMFAIRAR--------------------------------RKVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHHHHHHHHHT--------------------------------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHh
Confidence 99998887641 13578899999987654
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=391.72 Aligned_cols=263 Identities=38% Similarity=0.611 Sum_probs=243.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.+.|++|+|++.+++.|++.+..++++++.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
++|+|+++..++.+|..|+...||||||||+|.++++|+...+....+++++||..|++.....+++||+|||+++.||+
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 99999999999999999999999999999999999999888777889999999999999988889999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++||||||+.|++++|+.++|.+||+.++++.+...++++..+| ..|.||+|+||.++|++|++.|+++........
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA--~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999 679999999999999999999999876533211
Q ss_pred CCC------CCccccHHHHHHHHhhcCCCCC
Q 045279 661 SDV------TPFTIKLTHFEQALSKISPSVS 685 (702)
Q Consensus 661 ~~~------~~~~i~~~d~~~al~~~~~~~~ 685 (702)
... ....|+.+||..|+..+.|+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 111 2346899999999999988653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=350.29 Aligned_cols=282 Identities=45% Similarity=0.830 Sum_probs=251.8
Q ss_pred CccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 417 ~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
++.....|.+.|++++|++.+++.+.+.+.+++.+++.|.+++..++.++||+||||||||++|+++|..++.+|+.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 45556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+++.+.|+|+++..++.+|..+....|+||||||+|.+.+.++.. .+....+++++||..|++.....+++||+|||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 999999999999999999999999899999999999999876532 12334678899999999987778999999999
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+++.+|++++|||||+..+++++|+.++|.+|++.++++.+...+++++.++ ..+.||+|+||+++|++|++.|+++.
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la--~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887788999999 56899999999999999999999887
Q ss_pred HhhcCCC--------------CCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 654 LISSKSS--------------SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 654 ~~~~~~~--------------~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
....... .......|+.+||+.|+++++|+++.+++..|+.|.++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 5321100 0011247999999999999999999999999999999884
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=362.93 Aligned_cols=247 Identities=37% Similarity=0.579 Sum_probs=225.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+..|+.+|+.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....|||+||||+|.++..+... .+....+++.+||..|+++..
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--------------- 308 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--------------- 308 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS---------------
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC---------------
Confidence 99999999999999999999999999999999999876432 234557889999999998643
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeC-CCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLG-VPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~-~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
..+|+||||||.++.|||+++|||||+..|+|| +|+.++|..||+.++++..+..+.++..+|..|+||+|+||.++
T Consensus 309 --~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 --STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp --SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred --CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHH
Confidence 345999999999999999999999999999996 89999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|++|+..++++. ...|+.+||..|+...
T Consensus 387 ~~eA~~~a~r~~--------------------------------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 387 MQEAGLRAVRKN--------------------------------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--------------------------------CCCCCHHHHHHHHHHh
Confidence 999998887641 1358899999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=350.14 Aligned_cols=275 Identities=32% Similarity=0.602 Sum_probs=246.1
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEeccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIKGPELL 500 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l~ 500 (702)
..|+++|++|+|++.+|+.|.+.+.+++++++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457899999999999999999999999999999874 35678999999999999999999999999 8999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCccC
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ld 579 (702)
++|+|+++..++.+|..++...|+||||||+|.+.+.++........+++++|+..|++.. ...+++||+|||+++.+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 9999999999999999999999999999999999998887767778899999999999975 467899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++++| ||+..+++++|+.++|..|++.++++.+.. .+.+++.++ ..+.||+|+||.++|++|++.|+++......
T Consensus 164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la--~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~ 239 (322)
T 1xwi_A 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELG--RKTDGYSGADISIIVRDALMQPVRKVQSATH 239 (322)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHH--HTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999 999999999999999999999999887654 456788888 6789999999999999999999998764210
Q ss_pred -------C-------------------------------CCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 659 -------S-------------------------------SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 659 -------~-------------------------------~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
. ........|+++||+.|+++++||++.++++.|++|.++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 0 00011247999999999999999999999999999999997
Q ss_pred c
Q 045279 701 A 701 (702)
Q Consensus 701 ~ 701 (702)
+
T Consensus 320 ~ 320 (322)
T 1xwi_A 320 Q 320 (322)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=342.31 Aligned_cols=268 Identities=46% Similarity=0.837 Sum_probs=218.6
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|+++|++++|++++|+.+.+.+.+++.+++.+.++++.++.|++|+||||||||++++++|..++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
.|+|+.+..++.+|..++...|+++|+||+|.+...|+........+++++++.+|++......++++++||+|+.||++
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence 99999999999999999888999999999999887664432233357789999999999888899999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhcc---CCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARK---KPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++||||||..|++++|+.++|.+||+.+++. .+...+++++.+|....|+||+|+||.++|++|++.|+++......
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~ 242 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999864 3456788999999654567999999999999999999988654322
Q ss_pred CCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 659 SSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
.........|+++||++|+++++|+++.+++
T Consensus 243 ~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 243 SGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 1122234579999999999999999988654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=342.55 Aligned_cols=278 Identities=33% Similarity=0.610 Sum_probs=243.0
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|++.|++++|++.+++.+.+.+.+++.+++.+.. +..++.++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 345568899999999999999999999999999998876 5577899999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ 577 (702)
+.+.|+|+++..++.+|..++...|+||||||+|.+.+.++........+++++++..|++.. ...+++||+|||+++.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 999999999999999999999999999999999999988866555566889999999999874 5678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
||++++| ||+..+++++|+.++|..|++.++++.+.. .+.+++.++ ..+.||+|+||+++|++|++.|+++....
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la--~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH--HTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999999887654 456788888 67899999999999999999999988653
Q ss_pred cC--------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK--------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~--------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .........|+++||.+|++.++|+++.+++..|++|.++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 10 0011123579999999999999999999999999999999985
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=342.66 Aligned_cols=276 Identities=34% Similarity=0.617 Sum_probs=234.6
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+.+.|++|+|++.+++.|.+.+.+++.+++.|.. +..++.++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3457889999999999999999999999999999886 567889999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC-CCcEEEEEecCCCCccC
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDVMD 579 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~atn~~~~ld 579 (702)
+.|+|.++..++.+|..++...|+||||||+|.+.+.|+........+++++||..|++... ..+++||+|||+++.+|
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 99999999999999999999899999999999999888766667778999999999998753 56899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++++| ||+..+++++|+.++|..||+.++...+.. .+.+++.|+ ..+.||+|+||+++|++|++.|+++......
T Consensus 202 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la--~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~ 277 (355)
T 2qp9_X 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSATH 277 (355)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999 999999999999999999999999887653 456788888 6789999999999999999999998653210
Q ss_pred --------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 659 --------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 --------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.......+.|+++||..|++.++|+++.+++..|++|.++|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 278 FKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp EEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred hhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0000123469999999999999999999999999999999974
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=378.36 Aligned_cols=446 Identities=19% Similarity=0.267 Sum_probs=312.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-+|++++|.++.++++.+.+ ....++++||+||||||||++|+++++.+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l-------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHH-------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 37999999999999998866 23457889999999999999999999987 56788888
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+..+.. .+.|..+..++.+|..+....++||||||+|.+.+.+...... ....+.|...++
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~~~~~L~~~l~--------------- 312 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLLS--------------- 312 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHHHHSSCSS---------------
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HHHHHHHHHHHh---------------
Confidence 888774 4778889999999999877778999999999998654331111 111111211111
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc----CCc-ccHHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV----EGS-FDLVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~----~~~-~~~~~la~ 338 (702)
.+.+.+|++||.++ .+|+++.+ ||. .+.|+.|+.+++.+|+..+...+.. ... ..+..++.
T Consensus 313 ------~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~ 383 (758)
T 1r6b_X 313 ------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE 383 (758)
T ss_dssp ------SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ------CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 24588999998743 68899999 995 7999999999999999987765321 111 12333333
Q ss_pred h-----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 339 S-----TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 339 ~-----t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
. ...+.+..+..++++|+...... +. ......++.+++..++..+..
T Consensus 384 ~s~~~i~~~~lp~~~i~lld~a~~~~~~~------~~----------------------~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 384 LAVKYINDRHLPDKAIDVIDEAGARARLM------PV----------------------SKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHCTTSCTTHHHHHHHHHHHHHHHHS------SS----------------------CCCCCSCCHHHHHHHHHHHSC
T ss_pred HhhhhcccccCchHHHHHHHHHHHHHhcc------cc----------------------cccCCccCHHHHHHHHHHhcC
Confidence 3 23345556666776664322110 00 001235778888888776643
Q ss_pred CCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCCCChhHHHHH
Q 045279 414 SSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 414 ~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
...... ...+.......+.|++.++..+...+... +.|. .+..++||+||||||||++|++
T Consensus 436 ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 436 IPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHH
Confidence 211100 00011112345778887777776655432 2333 2345799999999999999999
Q ss_pred HHHHhCCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHH
Q 045279 483 VANEAGANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~ 550 (702)
+|+.++.+|+.++++++... |+|..+.. .+...++..+++||||||++.+. .+++
T Consensus 508 la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~ 574 (758)
T 1r6b_X 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAH-----------PDVF 574 (758)
T ss_dssp HHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSC-----------HHHH
T ss_pred HHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCccccC-----------HHHH
Confidence 99999999999999988653 44433322 34555666688999999999998 7899
Q ss_pred HHHHHhhhCCC---------CCCcEEEEEecCCCC-------------------------ccCccccCCCccceEEEcCC
Q 045279 551 NQLLIELDGAD---------KRKGVFVIGATNRPD-------------------------VMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 551 ~~ll~~l~~~~---------~~~~~~vI~atn~~~-------------------------~ld~a~~r~gRf~~~i~~~~ 596 (702)
+.|++.|+... ...+++||+|||... .++|+|++ ||+.+|.|++
T Consensus 575 ~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~ 652 (758)
T 1r6b_X 575 NILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDH 652 (758)
T ss_dssp HHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCC
T ss_pred HHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCC
Confidence 99999998531 125789999999854 67888888 9999999999
Q ss_pred CCHHHHHHHHHHHhccC-------C--CC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 597 PTPDERGLILEALARKK-------P--ID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 597 p~~~~r~~il~~~~~~~-------~--~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
|+.+++..|++.++.+. . +. .+..++.++...+..+++.++|+++++.++..++.+.+..
T Consensus 653 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~ 722 (758)
T 1r6b_X 653 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999887632 1 11 2234566776556667889999999999998877776554
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=369.93 Aligned_cols=461 Identities=17% Similarity=0.246 Sum_probs=300.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-++++|+|.++.++++.+.+ .....+++||+||||||||++|+++|+.+ +.+++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l-------------~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVL-------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHH-------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHH-------------hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 37999999999999998876 22456789999999999999999999997 78888888
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
+ ...+.|+++..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~---------~~~~~~L~~~l~----------------- 288 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA---------IDASNILKPSLA----------------- 288 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT-----------------
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc---------hhHHHHHHHHHh-----------------
Confidence 7 455788888899999999998889999999 00 011122222222
Q ss_pred CCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-----HHHHHhh-
Q 045279 271 SDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-----LVKIARS- 339 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-----~~~la~~- 339 (702)
.+.+++|++||..+ .+|++++| || ..|.|+.|+.+++.+||+.+...+...+... +..++..
T Consensus 289 ----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 289 ----RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHH
T ss_pred ----cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 34589999999988 79999999 99 6799999999999999998887754333222 2333322
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH-------------HHhhhhcc----ccCccccc-----------cCcccccC
Q 045279 340 ----TPGFVGADLAALANKAGNLAMKRI-------------IDQRKSEL----SGNSIAEQ-----------HSDDWWRQ 387 (702)
Q Consensus 340 ----t~g~~~~dl~~l~~~a~~~a~~r~-------------~~~~~~~~----~~~~~~~~-----------~~~~~~~~ 387 (702)
+.++.+.....+++.|+..+..+. +....... ........ ........
T Consensus 362 ~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 441 (758)
T 3pxi_A 362 DRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441 (758)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777755432110 00000000 00000000 00000000
Q ss_pred CCChh-hhhhhcccHhHHHHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcC
Q 045279 388 PWLPE-EMERLTITMTDFEEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG 459 (702)
Q Consensus 388 ~~~~~-~~~~~~i~~~d~~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~ 459 (702)
.|... ......++.+++...+..+...... .............++|++.+++.+...+....... ...
T Consensus 442 ~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~ 517 (758)
T 3pxi_A 442 SWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDP 517 (758)
T ss_dssp GGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCT
T ss_pred HHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCC
Confidence 01000 0122456677777777665432111 01111112234568899998888877765542110 001
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+..++||+||||||||++|+++|..+ +.+|+.++++++...+... ...++..++..+++||||||++.+.
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~- 592 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH- 592 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-
Confidence 1223379999999999999999999987 7899999999999887655 2234455566688999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCCc------------cCccccCCCccceEEEcC
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPDV------------MDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~~------------ld~a~~r~gRf~~~i~~~ 595 (702)
..+++.|++.|+... ...+++||+|||.+.. +.|++++ ||+.+|.|+
T Consensus 593 ----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~ 660 (758)
T 3pxi_A 593 ----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFH 660 (758)
T ss_dssp ----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC
T ss_pred ----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecC
Confidence 889999999998632 3457899999997543 7888888 999999999
Q ss_pred CCCHHHHHHHHHHHhccC-------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 596 LPTPDERGLILEALARKK-------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 596 ~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|+.+++..|++.++... ... .+..++.++...+...++.++|+++|++++..++.+.+...
T Consensus 661 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~ 732 (758)
T 3pxi_A 661 SLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRG 732 (758)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998876542 111 12235566654455567889999999999998888776543
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=345.12 Aligned_cols=277 Identities=32% Similarity=0.579 Sum_probs=236.4
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEeccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIKGPE 498 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~ 498 (702)
....|.+.|++|+|++.+++.|.+.+.+++.++..|.. +..++.++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34567899999999999999999999999999988774 34677999999999999999999999999 89999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ 577 (702)
+.+.|+|.++..++.+|..++...|+||||||+|.+.+.++........+++++||..|++.. ...+++||+|||+++.
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 999999999999999999999999999999999999988877766777899999999999875 3678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+|++++| ||+..+++++|+.++|..||+.++...+.. .+.+++.++ ..+.||+|+||.++|++|++.|+++....
T Consensus 284 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la--~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 284 LDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG--RKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999999999999877653 456788888 67899999999999999999999987642
Q ss_pred c-------CC-------------------------------CCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 045279 657 S-------KS-------------------------------SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSET 698 (702)
Q Consensus 657 ~-------~~-------------------------------~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~ 698 (702)
. .. ......+.|+++||..|+++++||++.+++..|+.|.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~ 439 (444)
T 2zan_A 360 THFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTED 439 (444)
T ss_dssp SEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSS
T ss_pred hhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1 00 000123579999999999999999999999999999999
Q ss_pred Hhc
Q 045279 699 FKA 701 (702)
Q Consensus 699 ~~~ 701 (702)
|++
T Consensus 440 ~~~ 442 (444)
T 2zan_A 440 FGQ 442 (444)
T ss_dssp CTT
T ss_pred HcC
Confidence 875
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=368.38 Aligned_cols=474 Identities=21% Similarity=0.289 Sum_probs=299.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
.+|++++|.++.++++.+.+. ....++++|+||||||||++|+++|+.+ +.+++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 379999999999999987662 2345789999999999999999999997 78899999
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
++.+.. .+.|..+..+..+|..+... .|+||||||+|.+.+....... ....+.|...++
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~-------------- 296 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA-------------- 296 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH--------------
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh--------------
Confidence 999874 47788889999999998765 6889999999999865433211 222233444443
Q ss_pred CCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHh
Q 045279 268 SDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIAR 338 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~ 338 (702)
.+.+.+|++||.++ .+++++.+ ||+. +.++.|+.+++.+|++.++..+...+.. .+..++.
T Consensus 297 -------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 297 -------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 366 (854)
T ss_dssp -------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred -------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence 23478999998864 58999999 9965 9999999999999998877654322221 2333333
Q ss_pred -----hCCCCCHHHHHHHHHHHHHHHHHH-------------HHHhhh---hccccCc--ccccc---------------
Q 045279 339 -----STPGFVGADLAALANKAGNLAMKR-------------IIDQRK---SELSGNS--IAEQH--------------- 380 (702)
Q Consensus 339 -----~t~g~~~~dl~~l~~~a~~~a~~r-------------~~~~~~---~~~~~~~--~~~~~--------------- 380 (702)
.+..|.+.....++++|+...... .+.+.. .....+. .....
T Consensus 367 ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (854)
T 1qvr_A 367 LSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEI 446 (854)
T ss_dssp HHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHH
T ss_pred HHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 345677888888888776543211 000000 0000000 00000
Q ss_pred ---Cccccc--------------------------CCCC---------------------------hhhhhhhcccHhHH
Q 045279 381 ---SDDWWR--------------------------QPWL---------------------------PEEMERLTITMTDF 404 (702)
Q Consensus 381 ---~~~~~~--------------------------~~~~---------------------------~~~~~~~~i~~~d~ 404 (702)
...|.. ..+. ....-..+++.+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 526 (854)
T 1qvr_A 447 AKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDI 526 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHH
Confidence 000000 0000 00001234666777
Q ss_pred HHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCC
Q 045279 405 EEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPG 473 (702)
Q Consensus 405 ~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~G 473 (702)
...+..+...... ......+...+..++|.+.+++.+...+... +.|. .+..++||+||||
T Consensus 527 ~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~G 598 (854)
T 1qvr_A 527 AEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTG 598 (854)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSS
T ss_pred HHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCC
Confidence 7766655431100 0011112223567889888888887766543 1221 2335799999999
Q ss_pred CChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 474 CGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 474 tGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
||||++|+++|..+ +.+|+.++++++... |+|... ...+...++..+++||||||++.+.
T Consensus 599 tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--- 673 (854)
T 1qvr_A 599 VGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--- 673 (854)
T ss_dssp SSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC---
T ss_pred CCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---
Confidence 99999999999998 789999999887653 334332 1244555566678999999999988
Q ss_pred CCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC--------------------------CccCcccc
Q 045279 539 GKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP--------------------------DVMDRAVL 583 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~--------------------------~~ld~a~~ 583 (702)
..+++.|++.|+... ...+++||+|||.. ..+.|+|+
T Consensus 674 --------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~ 745 (854)
T 1qvr_A 674 --------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL 745 (854)
T ss_dssp --------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHH
T ss_pred --------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHH
Confidence 889999999998532 23478999999972 24667777
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccC-------CC--C-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKK-------PI--D-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~--~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+ ||+.++.|++|+.+++..|++.++.+. .. . .+..++.++...+...++.++|+++|+.++..++.+.
T Consensus 746 ~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 746 N--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp H--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred H--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999998887631 11 1 1223455664333335677999999999999888887
Q ss_pred Hhhc
Q 045279 654 LISS 657 (702)
Q Consensus 654 ~~~~ 657 (702)
+...
T Consensus 824 i~~~ 827 (854)
T 1qvr_A 824 ILAG 827 (854)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 6543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.53 Aligned_cols=286 Identities=46% Similarity=0.744 Sum_probs=239.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
..+|++|+|++.++++|.+.+..++.+|+++..+|..++.++||+||||||||++|+++++.++.+|+.++|+++.+.+.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
|.....++.+|..+....|++|||||||.+.+.++....+...+++..|+..|++... +.+++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~-----------------~~~v~ 342 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------------RAHVI 342 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT-----------------TSCEE
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc-----------------CCceE
Confidence 9999999999999999999999999999999887766667788899999999996532 45699
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
||+|||.++.++++++++|||+..+.++.|+.++|.+||+.+++........++..++..+.||+++||..+|+.|...+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888999999999999999999999999888
Q ss_pred HHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 360 MKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 360 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.++...... ...............++.+||..++..+.|+..++.....|+++|+||||....
T Consensus 423 ~r~~~~~i~---------------~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 423 IRKKMDLID---------------LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHTTTTTCC---------------TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred HHhcccccc---------------ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 765332110 000111223345578999999999999999999999999999999999997653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=318.65 Aligned_cols=246 Identities=41% Similarity=0.700 Sum_probs=220.1
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+.++|++++|++.+++.+.+.+.. +..+..+.+++...+.|++|+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999987654 778899999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|+|.++..++.+|..|+...|+||||||+|.+..+|+.. ......+++++||..|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999999887642 23345688999999999887778899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
++++|||||+..|.+++|+.++|.+|++.++++.++..++++..++ ..+.||+|+||.++|++|+..|.++..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la--~~t~G~sgadL~~lv~~Aal~A~~~~~----- 241 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIA--KRTPGFVGADLENLVNEAALLAAREGR----- 241 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHH--HhcCCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999999999999999999999999999999998888888899998 678999999999999999988876532
Q ss_pred CCCCCCccccHHHHHHHHhhcCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..|+.+||..|+.++.+
T Consensus 242 ------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------SSBCHHHHHHHHHHHC-
T ss_pred ------CeecHHHHHHHHHHHhc
Confidence 27999999999998854
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=296.82 Aligned_cols=267 Identities=41% Similarity=0.660 Sum_probs=227.9
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|...|++++|++.+++.+.+.+..++.+++.+.+++..++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|.|.....++.+|..+....|+||||||+|.+.+++.... .....+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999998776542 234567788888888888777899999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|+++++++||+..+.++.|+.++|.+|++.+++......+.++..++ ..+.||+++||+++|+.|...|+.+...
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~i~~l~~~a~~~a~~~~~~--- 244 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA--KMTEGCVGAELKAICTEAGMNAIRELRD--- 244 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HHCTTCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhccC---
Confidence 99999999999999999999999999999999988888888999999 6789999999999999999999887532
Q ss_pred CCCCCCCccccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhc
Q 045279 659 SSSDVTPFTIKLTHFEQALSKISP--SVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~~--~~~~~~~~~~~~~~~~~~~ 701 (702)
.|+.+||.+|+..+.+ ......-.+|..|+.+|+.
T Consensus 245 --------~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 245 --------YVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp --------SBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred --------cCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 7999999999997743 2333446788999988763
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=301.49 Aligned_cols=276 Identities=34% Similarity=0.576 Sum_probs=228.5
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+++.|++++|++.+++.+.+.+..+..+++.+..++ .++.+++|+||||||||++|+++|..++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345678999999999999999999999999988887665 5678999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC---CcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR---KGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~vI~atn~~~~ 577 (702)
+.|+|.++..++.+|..+....|+||||||+|.+...++........++++.|+..+++.... .+++||++||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 999999999999999999998999999999999998876554445578889999999986543 57999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+++++++ ||+..+++++|+.++|..|++.+++..+.. .+.+++.++ ..+.||+|+||+++|++|+..++++....
T Consensus 172 l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la--~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 172 LDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA--KITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp BCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred CCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999998876543 234567777 56899999999999999999998874321
Q ss_pred cC-CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK-SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~-~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .........|+.+||..|+..++|+++.+++..|+.|.+.|+.
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred hcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 11 1111223479999999999999999999999999999999875
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=315.21 Aligned_cols=260 Identities=38% Similarity=0.613 Sum_probs=236.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.+.|++++|++..++.+.+.+..++.+++.|.++|..++.++||+||||||||++|+++|..++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL 583 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~ 583 (702)
+|+.+..++.+|..|....|++|||||+|.+.++++...+....++++.|+..|++.....+++||+|||+++.+|+++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 99999999999999999999999999999999998877777788999999999999888889999999999999999999
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDV 663 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~ 663 (702)
++|||+..++|++|+.++|.+||+.+++...+..+.++..++ ..+.||+++||.++|++|++.|+++...........
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la--~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~ 436 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSS
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHH--HHccCCcHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999999998888888999999 678999999999999999999998865422111111
Q ss_pred ------CCccccHHHHHHHHhhcCCCCC
Q 045279 664 ------TPFTIKLTHFEQALSKISPSVS 685 (702)
Q Consensus 664 ------~~~~i~~~d~~~al~~~~~~~~ 685 (702)
....|+++||+.|++.++|+..
T Consensus 437 ~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp CCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred cchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 1236999999999999987643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=308.73 Aligned_cols=275 Identities=33% Similarity=0.594 Sum_probs=232.8
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..+.+.|++++|++.+++.+.+.+.+++.++..+.+.+ .++.++||+||||||||++|+++|..++.+|+.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999999888877654 66789999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--CCCcEEEEEecCCCCccC
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--KRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~atn~~~~ld 579 (702)
.|+|..+..++.+|..+....|+||||||+|.+.+.++........++++++|..+++.. ...+++||+|||.++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 999999999999999999889999999999999988766656667899999999999864 346899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
+++++ ||+..+++++|+.++|..|++.+++..... .+.+++.++ ..+.||+|+||+++|++|+..++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la--~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV--QQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999 999999999999999999999998876543 345677788 5689999999999999999999886431110
Q ss_pred -CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 659 -SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 -~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.........|+.+||..|+++++|+++.++++.|+.|.+.|++
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 0111223579999999999999999999999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=294.63 Aligned_cols=262 Identities=37% Similarity=0.644 Sum_probs=208.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|++|.+.+..|+.+++.+..+++..+.+++|+||||||||||+++||+.++..++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.+..+..+..+|+.+....|+++|+||+|.+...+.........++.+.++..|++... ...
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-----------------~~~ 146 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA-----------------RQQ 146 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS-----------------TTC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc-----------------cCC
Confidence 888888899999999988899999999999987654332222234567788888886432 234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC---cccCCcccHHHHHhhCC--CCCHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN---LRVEGSFDLVKIARSTP--GFVGADLAALA 352 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~---~~~~~~~~~~~la~~t~--g~~~~dl~~l~ 352 (702)
++++++||.|+.+|++++|||||+..|+++.|+.++|.+||+.+++. .....+.++..++..+. ||+|+||..+|
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999998864 33455778999998754 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR 417 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~ 417 (702)
++|+..++++.+..... ........|+.+||..++..++|+...
T Consensus 227 ~~a~~~a~~~~~~~~~~---------------------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 227 REASICALRQEMARQKS---------------------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HHHHHHHHHHHC--------------------------------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHhhccc---------------------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 99999988775432110 001123579999999999999887543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=285.35 Aligned_cols=246 Identities=39% Similarity=0.663 Sum_probs=216.2
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+...|++++|++.+++.+.+.+.+ +.++..+.+++...+.+++|+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4577899999999999999886654 778888888898999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+.|.++..++.+|..+....|+++||||+|.+...++.. ......+.++.++..+++.....+++||++||.++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 999999999999999998889999999999999877543 22344578999999999988788899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
++++||+||+..+++++|+.++|.+|++.+++..++..+.++..++ ..+.||+++||.++|++|+..|..+..
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~----- 237 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK----- 237 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999999999999988888888888888 568899999999999999998887542
Q ss_pred CCCCCCccccHHHHHHHHhhcCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..|+.+||.+|+..+..
T Consensus 238 ------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 238 ------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------SSBCHHHHHHHHHHHTT
T ss_pred ------CcccHHHHHHHHHHHhc
Confidence 27999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=296.63 Aligned_cols=231 Identities=34% Similarity=0.582 Sum_probs=207.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEechhhh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISATEVV 195 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~~~l~ 195 (702)
..+.++|+||+|++.+|+.|.+.+.+|+.+|+++.. +..+++++||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456779999999999999999999999999998874 35677999999999999999999999999 8899999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
..+.|..+..++.+|..+....|+||||||+|.+.+.++........++.+.++..+++... ..
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------------~~ 147 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----------------DN 147 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----------------CC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc----------------cC
Confidence 99999999999999999999999999999999999877666666778889999999986532 23
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+++||+|||.++.+|++++| ||+..+.++.|+.++|.+|++.+++..... ...++..+++.+.||+++||..+|++
T Consensus 148 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 459999999999999999999 999999999999999999999998877654 45678899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 045279 355 AGNLAMKRIIDQ 366 (702)
Q Consensus 355 a~~~a~~r~~~~ 366 (702)
|...++++....
T Consensus 226 A~~~a~r~~~~~ 237 (322)
T 1xwi_A 226 ALMQPVRKVQSA 237 (322)
T ss_dssp HHTHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=292.96 Aligned_cols=276 Identities=38% Similarity=0.586 Sum_probs=225.1
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++|+|++.+++.|.+.+..|+.+|+.+..+++.++.++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..+.|..+..+..+|..+....|+||||||+|.+...++... .....+++..|+..+++...
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--------------- 151 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--------------- 151 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT---------------
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC---------------
Confidence 999999999999999999999999999999999987654321 12234567788888885421
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.+++........++..++..+.||+|+||.++|
T Consensus 152 --~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~ 229 (301)
T 3cf0_A 152 --KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229 (301)
T ss_dssp --TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHH
T ss_pred --CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999888777778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|+..+.++.+........... .. .. ............++.+||..+++.+.|+.
T Consensus 230 ~~a~~~a~~~~~~~~~~~~~~~~---~~-~~---~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 230 QRACKLAIRESIESEIRRERERQ---TN-PS---AMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp HHHHHHHHHHHHHHHC---------------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHhhhhhhhhcc---cc-cc---cccccccccCCccCHHHHHHHHHHcCCCC
Confidence 99999998887644221100000 00 00 00000001124689999999999887754
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=300.98 Aligned_cols=279 Identities=36% Similarity=0.569 Sum_probs=227.1
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......+.+.|++++|++.+++.+.+.+..+..+++.+.+.+ .++.++||+||||||||++|+++|..++.+|+.++++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 334455778999999999999999999999999888887766 4578999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC--CCcEEEEEecCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK--RKGVFVIGATNRP 575 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~atn~~ 575 (702)
++.+.|+|..+..++.+|..+....|+||||||+|.+...+.........++++.|+..|++... ..+++||+|||++
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999999887666566678999999999998654 5679999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+++++++ ||+..++|++|+.++|..||+.++...... .+.++..++ ..+.||++++|..+|+.|+..++++..
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la--~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLA--RMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999998876543 234567777 568899999999999999999988743
Q ss_pred hhcC-CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 655 ISSK-SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 655 ~~~~-~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.... .........|+.+||..|+..+.|+++.+.++.|+.|.+.|++
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 2111 1112233579999999999999999999999999999999975
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=293.41 Aligned_cols=281 Identities=33% Similarity=0.519 Sum_probs=225.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++|+|++.+|+.|.+.+..|+.+|+++.. +..++.++||+||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 44567789999999999999999999999999988876 56678999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|..+..+..+|..+....|+||||||||.+...+.........++...++..+++... .
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------~ 151 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------------D 151 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT----------------S
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc----------------c
Confidence 999999999999999999999999999999999999877655555667888899999987542 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+++||+|||.++.+|++++| ||+..++++.|+.++|.+|++.++...... ...++..++..+.||+++||..+|+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999999999999999999999998877644 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccC-------------CCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQ-------------PWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
.|...++++..............+. ...+... ....+......|+.+||..+++.++|+..
T Consensus 230 ~a~~~a~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 230 DALMQPIRKIQSATHFKDVSTEDDE--TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHTTHHHHHHHHCEEEEECC----C--CCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHhhhhhhhhhcccccc--ccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 9999999987654221111000000 0000000 00111222357999999999999888653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=302.56 Aligned_cols=246 Identities=40% Similarity=0.676 Sum_probs=220.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.++|++++|++.++..+.+.+. .+..+..+.+++...+.|++|+||||||||++|+++|..++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67899999999999999998654 46788889999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
+|.....++.+|+.+....|+|+||||+|.+...++.. ......+.++++|.+|++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999987789999999999998777532 234556889999999999887788999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++|||||+..|.+++|+.++|.+||+.++++.++..++++..++ ..+.||+|+||+++|++|+..|.++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA--~~t~G~~gadL~~lv~~Aa~~A~~~~~------ 256 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR------ 256 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHH--TTSCSCCHHHHHHHHHHHHHHHTTTCC------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 999999999999999999999999999999888888888999999 678999999999999999987765421
Q ss_pred CCCCCccccHHHHHHHHhhcCCC
Q 045279 661 SDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
..|+.+||..|+.++.+.
T Consensus 257 -----~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 -----RKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----SSCCSHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHhcc
Confidence 269999999999988653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=292.98 Aligned_cols=283 Identities=33% Similarity=0.519 Sum_probs=218.4
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+..+|++|+|++.+++.|.+.+..|+.+|+++.. +..++.++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 33456779999999999999999999999999998876 56788999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|..+..+..+|..+....|+||||||+|.+...+.........++...|+..|++... .
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------------~ 184 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------------D 184 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC------------------
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc----------------c
Confidence 999999999999999999998899999999999999876655566778888999999986532 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.+++||+|||.++.++++++| ||+..++++.|+.++|.+||+.++...... ...++..+++.+.||+++||..+|+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999999999999999999999998877643 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccc-----cccC---cccccCC---CChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIA-----EQHS---DDWWRQP---WLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~-----~~~~---~~~~~~~---~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
+|+..++++............... ..+. ....... ..........|+.+||..++..++|+..
T Consensus 263 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 263 DALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 999999988764321000000000 0000 0000000 1112223457999999999999988653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=283.46 Aligned_cols=245 Identities=37% Similarity=0.638 Sum_probs=196.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
|.+.|++++|++.+++.+.+.+.. +.+++.+..+|...+.++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999887655 7888889999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC----chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG----GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
.|.+...++.+|..+....|+||||||+|.+..++.... .......++.++..+++.....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 999999999999999988899999999999987764422 2233567888999999877778999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCH--HHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDL--HTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~--~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
++++|||||+..+++++|+.++|.+|++.+++..+...+.++ ..++ ..+.||+|+||+++|++|+..|+++...
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~l~~l~~~a~~~a~~~~~~-- 235 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA--ELTPGFSGADIANICNEAALHAAREGHT-- 235 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHH--HTCTTCCHHHHHHHHHHHHTC---------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999998776654433 5566 5678999999999999999888766432
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.|+.+||..|+.++.+
T Consensus 236 ---------~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 236 ---------SVHTLNFEYAVERVLA 251 (262)
T ss_dssp ----------CCBCCHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHhcc
Confidence 6899999999998754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=271.37 Aligned_cols=244 Identities=41% Similarity=0.685 Sum_probs=212.7
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|..+|++++|++.++..+.+... .+..+..+..+++..+.|++|+||||||||+++++++..++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34577899999999999999988554 46778889999999999999999999999999999999999999999999998
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..+.+.....++.+|+.+....|+++||||+|.+...+... ......+.+++++..|++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888889999999987789999999999998766432 233456788999999999877778999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|++||+..++++.|+.++|.+||+.+++...+..+.++..++ ..+.||+|+||+++|++|+..|..+..
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~G~~~~dl~~~~~~a~~~a~~~~~--- 241 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR--- 241 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999999999999999999999999999888888888899999 678999999999999999988876532
Q ss_pred CCCCCCCCccccHHHHHHHHh
Q 045279 658 KSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+||++|++
T Consensus 242 --------~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 242 --------RKITMKDLEEAAS 254 (254)
T ss_dssp --------SSBCHHHHHHHTC
T ss_pred --------CCcCHHHHHHHhC
Confidence 2699999999863
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=287.31 Aligned_cols=246 Identities=46% Similarity=0.672 Sum_probs=210.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|+++.+.+. .+..+..+..++.+.+.++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 356799999999999999998774 4677888888899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....++.+|..+....|+||||||+|.+...++.. .+....+.+..|+..|+++..
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~----------------- 151 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS----------------- 151 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----------------
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----------------
Confidence 999988999999999999999999999999998766532 233445678889998886432
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+..++||++||.++.+||+++|+|||+..+.++.|+.++|.+|++.+++...+..+.++..++..++||+++||.++|++
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHH
Confidence 23499999999999999999999999999999999999999999999988877777789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
|+..+.++ ....|+.+||..++..+.+
T Consensus 232 Aal~A~~~--------------------------------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 232 AALLAARE--------------------------------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHT--------------------------------TCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHc--------------------------------CCCeecHHHHHHHHHHHhc
Confidence 98776532 0135788999998887654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=293.38 Aligned_cols=235 Identities=34% Similarity=0.570 Sum_probs=197.7
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISA 191 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~ 191 (702)
......+.++|++|+|++.+++.|.+.+..|+.+|+++.. +..+++++||+||||||||++|+++|+.+ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3344577889999999999999999999999999998874 35677999999999999999999999999 889999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|..+..+..+|..+....|+||||||||.+.+.+.........++.+.|+..+++...
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-------------- 267 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-------------- 267 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC--------------
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc--------------
Confidence 999999999998899999999998899999999999998776655555667888888888876421
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~ 350 (702)
.+.+++||+|||.++.+|++++| ||+..+.++.|+.++|..||+.++...... ...++..++..+.||+++||..
T Consensus 268 --~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 268 --DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp --CCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred --CCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 23459999999999999999999 999999999999999999999998876543 4567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 045279 351 LANKAGNLAMKRIIDQ 366 (702)
Q Consensus 351 l~~~a~~~a~~r~~~~ 366 (702)
+|+.|+..++++....
T Consensus 344 l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 344 IVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987654
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-33 Score=285.49 Aligned_cols=254 Identities=36% Similarity=0.609 Sum_probs=213.7
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+...|++++|++.+++.+.+.+.. +.+++.+.+++...+.++||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4677899999999999999986654 789999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC----chHHHHHHHHHHHhhhCCCC-CCcEEEEEecCCCCc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG----GWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDV 577 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----~~~~~~~~~~ll~~l~~~~~-~~~~~vI~atn~~~~ 577 (702)
|.|.++..++.+|..+....|+||||||+|.+...+.... .....+.++.|+..+++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 9998888888999999988999999999999987653221 11123467788888887643 355899999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|+|||+..++|++|+.++|..||+.+++...+..+.+++.++ ..+.||+|+||+++|++|+..|..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~g~~g~dl~~l~~~a~~~a~~~~---- 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVA--KLTAGLAGADLANIINEAALLAGRNN---- 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTT--SSSCSSCHHHHHHHHHHHHHTTSSSC----
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999999999999999999999999988877778888888 56889999999999999987765432
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCCCCHHHHH
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPSVSELQIQ 690 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~ 690 (702)
...|+.+|+..|+..+.|+...+...
T Consensus 238 -------~~~i~~~~~~~a~~~~~~~~~~~~~~ 263 (268)
T 2r62_A 238 -------QKEVRQQHLKEAVERGIAGLEKKLEH 263 (268)
T ss_dssp -------CCSCCHHHHHTSCTTCCCCCC-----
T ss_pred -------cCCcCHHHHHHHHHHHhhcchhhhhh
Confidence 12799999999999999987765433
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=264.27 Aligned_cols=244 Identities=41% Similarity=0.685 Sum_probs=212.1
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|...|++++|++.++..+.+.+. .+..+..+..+++..+.|++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 33478899999999999999988554 46778889999999999999999999999999999999999999999999988
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..+.+.....+..+|+.+....|+++||||+|.+...+... ......+.+++++.+|++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888889999999987789999999999998665431 223456788999999998877778999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|++||+..++|++|+.++|.+||+.+++...+..+.++..++ ..+.||+|+||+++|++|+..|..+..
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~--- 265 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR--- 265 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC---
Confidence 999999999999999999999999999999999888887888899998 678999999999999999988776432
Q ss_pred CCCCCCCCccccHHHHHHHHh
Q 045279 658 KSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+||++|++
T Consensus 266 --------~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 266 --------RKITMKDLEEAAS 278 (278)
T ss_dssp --------CSBCHHHHHHHTC
T ss_pred --------CCcCHHHHHHHhC
Confidence 2699999999863
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=268.74 Aligned_cols=247 Identities=43% Similarity=0.720 Sum_probs=214.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++.+++.|.+.+..++.+++.+..+|+.++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.|.....+..+|..+....|+||||||+|.+...+... ......+.+..++..+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---------------- 153 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA---------------- 153 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS----------------
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC----------------
Confidence 9999999999999999999999999999999998765432 122334555566666654321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.++++||+|||.++.+++++++++||+..+.++.|+.++|.+|++.+++........++..++..+.||+++++..+|+
T Consensus 154 -~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 154 -RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp -SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999998888777788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
.|...+..+. ...|+.+|+..++..+.
T Consensus 233 ~a~~~a~~~~--------------------------------~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 233 EAGMNAIREL--------------------------------RDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------------------------------cCcCCHHHHHHHHHHHH
Confidence 9988775531 12578889988887654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=260.71 Aligned_cols=226 Identities=43% Similarity=0.665 Sum_probs=192.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++++.+.+ ..+.++..+..++...+.+++|+||||||||++|+++|+.++.+++.++++++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 34568999999999999999766 44777777788888889999999999999999999999999999999999999988
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....+..+|+.+....|+++||||+|.+...++.. ......+.+..++..+++...
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------- 147 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----------------- 147 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-----------------
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-----------------
Confidence 899999999999999988889999999999998765432 122334667788888875421
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+.+++||++||.++.+++++.|++||+..+.++.|+.++|.+|++.+++...+....++..++..++||+++||..+|+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999988877777778899999999999999999999
Q ss_pred HHHHHHH
Q 045279 355 AGNLAMK 361 (702)
Q Consensus 355 a~~~a~~ 361 (702)
|...+..
T Consensus 228 a~~~a~~ 234 (257)
T 1lv7_A 228 AALFAAR 234 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877654
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=257.72 Aligned_cols=224 Identities=38% Similarity=0.601 Sum_probs=176.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
.++|++|+|++.+++.+.+.+. .+.+++.+..+|...+.++||+||||||||++|+++|+.++.+++.++++++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999998764 478888888889999999999999999999999999999999999999999988888
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh----HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ----REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
+.....+..+|..+....|+||||||+|.+...+.... .......+..++..+++.. .+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------------~~ 143 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------------TT 143 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----------------TT
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----------------CC
Confidence 88888899999999988899999999999986654321 1223345666777776532 13
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc--HHHHHhhCCCCCHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD--LVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~--~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++||+|||.++.+|++++++|||+..+.++.|+.++|.+|++.+++........+ ...++..+.||+++++..+|+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999988776654433 467899999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
.|...+..
T Consensus 224 ~a~~~a~~ 231 (262)
T 2qz4_A 224 EAALHAAR 231 (262)
T ss_dssp HHHTC---
T ss_pred HHHHHHHH
Confidence 98776643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=265.40 Aligned_cols=261 Identities=33% Similarity=0.528 Sum_probs=210.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.|.+.+..++.+++++...+ .++.++||+||||||||++|+++|+.++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3466999999999999999999999999999887654 667899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|.....+..+|..+....|+||||||||.+...+.........++...++..+++... ..+.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---------------~~~~~ 221 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---------------SSEDR 221 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------------CCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---------------cCCCC
Confidence 999999999999999998899999999999998876555556667888889998886431 12345
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||+|||.++.+++++++ ||+..+.++.|+.++|.+|+..++...... ....+..++..+.||+++|+..+|+.|.
T Consensus 222 v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988765543 2346788999999999999999999998
Q ss_pred HHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 357 NLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 357 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
..++++...... . ... ......|+.+||..++..+.|+..
T Consensus 300 ~~~ir~l~~~~~--------~----------~~~--~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 300 LGPIRSLQTADI--------A----------TIT--PDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp THHHHHCCC------------------------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHhhhhhh--------c----------ccc--ccccCCcCHHHHHHHHHhcCCCCC
Confidence 777664211000 0 000 011246899999999998877543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=269.98 Aligned_cols=262 Identities=33% Similarity=0.553 Sum_probs=202.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+..+|++|+|++.+++.|.+.+..++.+++++..++ .++.++||+||||||||++|+++|++++.+|+.++++++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 3345677999999999999999999999999999888765 457899999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|.....+..+|..+....|+||||||||.+...+.........++...|+..+++... ..
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~~ 249 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS---------------AG 249 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------------
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc---------------cC
Confidence 999999999999999999999999999999999998776554455567788889998886542 11
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.+|+||+|||.++.+++++++ ||...+.++.|+.++|.+|+..++...... ....+..++..+.||+++++..+|+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999899999999999999999988775543 2346788999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~ 414 (702)
.|...+.+++........ . ......|+.+||..++..+.++
T Consensus 328 ~a~~~~~rel~~~~~~~~-------------~-------~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 328 DAALGPIRELKPEQVKNM-------------S-------ASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHTTHHHHTSCCC---CC-------------S-------SSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHhhhhhhhhcc-------------c-------hhhcCCcCHHHHHHHHHHcCCC
Confidence 988777654221100000 0 0012368889999998876554
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=273.81 Aligned_cols=246 Identities=44% Similarity=0.647 Sum_probs=209.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+.++|++|+|+++++.++.+.+. .+..+..+..+++..+.+++|+||||||||+||++||+.++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67799999999999999997764 46777888888999999999999999999999999999999999999999999888
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.|.....+..+|+.+....|+++||||||.+...++.. ......+.+++++..|++... .
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-----------------~ 167 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------------D 167 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-----------------S
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-----------------C
Confidence 88888889999999877789999999999998655421 123345667788888875432 2
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+++|++||.++.+|++++|+|||+..+.++.|+.++|.+||+.+++...+..+.++..++..++||+++||.++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999998887777777899999999999999999999998
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~ 414 (702)
+..+.++ ....|+.+||..++..+.+.
T Consensus 248 a~~A~~~--------------------------------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAARE--------------------------------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTT--------------------------------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHh--------------------------------CCCccCHHHHHHHHHHHhcc
Confidence 8765431 01357888999998876554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=257.33 Aligned_cols=261 Identities=33% Similarity=0.505 Sum_probs=208.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.+.+.+..++.+|+++..++ .++.++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567999999999999999999999999998877654 457899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|.....++.+|..+....|+||||||+|.+...++....+...++...++..+++.... ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------------~~~~~ 159 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------------PDGDR 159 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------------C
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------------CCCCc
Confidence 9999888899999999988999999999999987765543344456677888888864320 01234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||++||.++.+++++++ ||+..+.++.|+.++|..|+..++...... ....+..++..+.||+++++..+|+.|.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988766543 2345788999999999999999999998
Q ss_pred HHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 357 NLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 357 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
..+.++......... . ......|+.+||..++..++|+.
T Consensus 238 ~~a~r~~~~~~~~~~-----~---------------~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 238 LEPIRELNVEQVKCL-----D---------------ISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp THHHHTCC----------------------------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHhhhhcccc-----c---------------ccccCCcCHHHHHHHHHHcCCCC
Confidence 877664311100000 0 00123689999999998877654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=245.78 Aligned_cols=228 Identities=44% Similarity=0.663 Sum_probs=190.2
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++++|+++++.++.+.+.. +..+..+...++..+.+++|+|||||||||+++++++.++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 345677999999999999999876643 4556667777888888999999999999999999999999999999999988
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..+.+.....+..+|+.+....|+++|+||+|.+...+... ......+.+..++..+++...
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--------------- 151 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--------------- 151 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---------------
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---------------
Confidence 88888888888999999877788999999999987654321 123335667778887775322
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
...++++++||.++.+|++++|++||+..+.++.|+.++|.+||+.+++...+..+.++..++..++||+++||..+|
T Consensus 152 --~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 152 --DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp --TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred --CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 234899999999999999999999999999999999999999999988887777777899999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 353 NKAGNLAMK 361 (702)
Q Consensus 353 ~~a~~~a~~ 361 (702)
++|...+.+
T Consensus 230 ~~a~~~a~~ 238 (254)
T 1ixz_A 230 NEAALLAAR 238 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876654
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=280.60 Aligned_cols=365 Identities=21% Similarity=0.244 Sum_probs=233.6
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVS 196 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~ 196 (702)
+...|++|+|++++++.+.+.+... ..+..+++++||+||||||||++|+++|+.++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4457999999999999988766332 12556778999999999999999999999999 9999999999999
Q ss_pred ccccccHHHHHHHHHHH---HhhCCceEEechhhHhhhcchhhhHHHHH-------------------HHHHHHHHHHhh
Q 045279 197 GVSGASEENIRDLFSKA---YRTAPSIVFIDEIDAIASKRENLQREMER-------------------RIVTQLMTCMDE 254 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a---~~~~p~il~iDEid~l~~~~~~~~~~~~~-------------------~~~~~ll~~ld~ 254 (702)
.+.|.++. +..+|..+ ....|+||||||+|.+++.+......... ++...++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 89999998 66789999999999999876543211111 111234444442
Q ss_pred hccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcce--EEEeCCC--CHHHHHHHHHHhhcCcccCCc
Q 045279 255 SHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR--EIVLGVP--DENARVQILSVLTRNLRVEGS 330 (702)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~--~i~~~~p--~~~er~~Il~~~~~~~~~~~~ 330 (702)
... .....++|++|||.++.+|+++.|++||+. .+.++.| +.++|.+|++.+..
T Consensus 183 ~~~---------------~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------- 240 (456)
T 2c9o_A 183 ERV---------------EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------- 240 (456)
T ss_dssp TTC---------------CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------
T ss_pred ccC---------------CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------
Confidence 110 012235556899999999999999999988 4566666 44777777764432
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhc
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKM 410 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~ 410 (702)
.++..++..+.| |+|+.++|......... .+.
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~i~~p~~~------------------------------------~I~---------- 272 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQLMKPKKT------------------------------------EIT---------- 272 (456)
T ss_dssp HHHHHTC-------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhhhcccchh------------------------------------hHH----------
Confidence 257778888888 88888887532100000 000
Q ss_pred cCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe
Q 045279 411 VQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN 490 (702)
Q Consensus 411 ~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~ 490 (702)
..+.+.+..
T Consensus 273 ------------------------~~lr~~I~~----------------------------------------------- 281 (456)
T 2c9o_A 273 ------------------------DKLRGEINK----------------------------------------------- 281 (456)
T ss_dssp ----------------------------CHHHH-----------------------------------------------
T ss_pred ------------------------HHHHHHHHH-----------------------------------------------
Confidence 000000000
Q ss_pred EEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 491 FIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 491 ~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
.+...+.... ...|+|+||||+|.+. .+.++.|+..|+..... ++|+
T Consensus 282 -------------------~l~~~~~~g~~~v~~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~~~--~~il 329 (456)
T 2c9o_A 282 -------------------VVNKYIDQGIAELVPGVLFVDEVHMLD-----------IECFTYLHRALESSIAP--IVIF 329 (456)
T ss_dssp -------------------HHHHHHHTTSEEEEECEEEEESGGGCB-----------HHHHHHHHHHTTSTTCC--EEEE
T ss_pred -------------------HHHHHHHhccccccceEEEEechhhcC-----------HHHHHHHHHHhhccCCC--EEEE
Confidence 0001111111 0123699999999998 88999999999976443 5444
Q ss_pred Ee---------cC---CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHH
Q 045279 570 GA---------TN---RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGA 636 (702)
Q Consensus 570 ~a---------tn---~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~ 636 (702)
++ |+ .++.+++.+++ ||.. +.|++|+.++..++++..+.......+ ..+..++ .++..-+.+
T Consensus 330 ~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~--~~a~~g~~r 404 (456)
T 2c9o_A 330 ASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG--EIGTKTTLR 404 (456)
T ss_dssp EECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHHHHSCHH
T ss_pred ecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHccCCCHH
Confidence 44 22 16788889988 9975 699999999999999988765443322 2344455 222112667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 637 DLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 637 dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..-++++.|...|..+.. ..|+.+|+.+|+..+-
T Consensus 405 ~a~~ll~~a~~~A~~~~~-----------~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 405 YSVQLLTPANLLAKINGK-----------DSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHTHHHHHHHHHHTTC-----------SSBCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhcCC-----------CccCHHHHHHHHHHhc
Confidence 777777777766665432 2799999999998874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=239.63 Aligned_cols=227 Identities=44% Similarity=0.660 Sum_probs=188.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++++++++.+.+. .+..+..+...++..+.+++|+|||||||||++++|++.++..++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467799999999999999987664 345556666777888888999999999999999999999999999999999888
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.+.....+..+|+.+....|+++|+||+|.+....... ......+.+..++..+++...
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---------------- 175 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------------- 175 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT----------------
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC----------------
Confidence 7778777888999999987788999999999987554321 122234556667776664321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...++++++||.++.+|++++|++||+..+.++.|+.++|.+||+.+++...+....++..++..++||+++||..+|+
T Consensus 176 -~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 176 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp -TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred -CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 2348999999999999999999999999999999999999999999888777777778999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
.|...+..
T Consensus 255 ~a~~~a~~ 262 (278)
T 1iy2_A 255 EAALLAAR 262 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876643
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-29 Score=259.20 Aligned_cols=249 Identities=39% Similarity=0.589 Sum_probs=196.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.+.+.+. .+.+++.+..++...+.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999998664 4777888888888999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH----HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR----EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+.|.....+..+|..+....|+||||||+|.+...+..... ....+.+..|+..+++.. .
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~ 147 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------------S 147 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----------------C
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------------c
Confidence 88877777788999998888999999999999865422110 000112233443333211 1
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...+++||+|||.++.+|+++++++||+..+.++.|+.++|.+|++.+++........++..++..+.||+++||.++|+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 23458999999999999999999999999999999999999999999998877666667888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
.|...+..+ ....|+.+++..++....|..
T Consensus 228 ~a~~~a~~~--------------------------------~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 228 EAALLAGRN--------------------------------NQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp HHHHTTSSS--------------------------------CCCSCCHHHHHTSCTTCCCCC
T ss_pred HHHHHHHHh--------------------------------ccCCcCHHHHHHHHHHHhhcc
Confidence 887654211 013577888888877766544
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=241.73 Aligned_cols=391 Identities=21% Similarity=0.244 Sum_probs=201.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~ 201 (702)
++|+|++++|+.+...+..+++++.++..+... ++.++||+||||||||++|+++|+.++.+|+.++++.+.. +|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 478999999999998888877666555444332 5688999999999999999999999999999999999888 58885
Q ss_pred -cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 202 -SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 202 -~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
.+..++.+|+.+... +++||++.+.. .......++++..|+.+||++.. .+.+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~-----------------~~~v-- 148 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWG-----------------EVEN-- 148 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccc-----------------cccc--
Confidence 788889999988664 45899876643 33455678999999999997642 1223
Q ss_pred EEe-cCCCCCCCccccCCCCcceEEEeCCCCHH-HHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 281 IGA-TNRPDAVDPALRRPGRFDREIVLGVPDEN-ARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 281 I~a-tn~~~~ld~al~r~~Rf~~~i~~~~p~~~-er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+++ ||.++.+|++|+|++||++.|+++.|+.. .+.+|+.. ..+ ... +.++..++...
T Consensus 149 ~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~g~--------~~~--------~~~~~~~~~~~--- 207 (444)
T 1g41_A 149 HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--PGM--------EEM--------TNQLQSLFQNL--- 207 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC--CCh--------HHH--------HHHHHHHHHhh---
Confidence 455 99999999999999999999999999987 67777653 000 000 00000000000
Q ss_pred HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccch
Q 045279 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLR 438 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k 438 (702)
.|. ..
T Consensus 208 -----------------------------------------------------~~~--------------------~~-- 212 (444)
T 1g41_A 208 -----------------------------------------------------GSD--------------------KT-- 212 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------cCC--------------------CC--
Confidence 000 00
Q ss_pred hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 439 HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 439 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
..|+..++ +. ..+-..+-..+.+ ..+...+....+|
T Consensus 213 -----------------------------------~~~~~~v~----~a----~~~l~~~e~~~l~-~~~~~~~~ai~~a 248 (444)
T 1g41_A 213 -----------------------------------KKRKMKIK----DA----LKALIDDEAAKLI-NPEELKQKAIDAV 248 (444)
T ss_dssp --------------------------------------------------------CCGGGSCSSC-CHHHHHHHHHHHH
T ss_pred -----------------------------------cceeeeHH----HH----HHHHHHHHHHHcc-CHHHHHHHHHHHh
Confidence 00000000 00 0000111112222 2344455566665
Q ss_pred HhCCCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEec----CCCCccCccccCC
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGAT----NRPDVMDRAVLRP 585 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~at----n~~~~ld~a~~r~ 585 (702)
. ..+|||+||+|+++.+.+....+.. ..+++.||..|++. ....++++|||. +.+..+.|.|+.
T Consensus 249 e--~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~- 325 (444)
T 1g41_A 249 E--QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG- 325 (444)
T ss_dssp H--HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT-
T ss_pred c--cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc-
Confidence 2 2269999999999965443344444 34888999999974 246778999887 234445578877
Q ss_pred CccceEEEcCCCCHHHHHHHHH---H--------HhccCCCC---CCCCHHHHhhh-----hcCCCCCHHHHHHHHHHHH
Q 045279 586 GRFGKLLYVPLPTPDERGLILE---A--------LARKKPID---DSVDLHTIAQS-----KFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 586 gRf~~~i~~~~p~~~~r~~il~---~--------~~~~~~~~---~~~~~~~la~~-----~~~~~~sg~dl~~~~~~a~ 646 (702)
||+.++.|+.++.++..+|+. . .+...+.. .+..+..++.. .++....++.|++++..++
T Consensus 326 -R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~ 404 (444)
T 1g41_A 326 -RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 404 (444)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH
T ss_pred -ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHH
Confidence 999999999999999999993 1 11112221 22335566653 2456777899999999888
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHH
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRY 692 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 692 (702)
..+..+.... ......|+.+++...+. +.+...++.+|
T Consensus 405 ~~~~~~~~~~-----~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 405 DKISFSASDM-----NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp HHHHHHGGGC-----TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred HHHHhhcccc-----CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 7766655431 22446799999987765 44556677776
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=237.83 Aligned_cols=173 Identities=22% Similarity=0.334 Sum_probs=136.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcchh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDAL 534 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l 534 (702)
+.++|.++||+||||||||++|+++|+.++.+|+.++++++.+.|+|.++..++.+|..| +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred hcccCCCC--chHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHH
Q 045279 535 TTKRGKEG--GWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 535 ~~~r~~~~--~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~ 601 (702)
.++++... ......+++.|+..||+.. ...+++||+|||+++.+|++++|||||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 98654322 1234577899999988432 45679999999999999999999999998887 469999
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHH
Q 045279 602 RGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLA 639 (702)
Q Consensus 602 r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~ 639 (702)
|.+|++.++... +.+.+.++ ..+.+|+|++|.
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~--~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVV--KIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHH--HHHHHSCSCCHH
T ss_pred HHHHHHHhccCC----CCCHHHHH--HHhCCCCcccHH
Confidence 999999888754 45577777 567899998875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-24 Score=219.78 Aligned_cols=185 Identities=19% Similarity=0.276 Sum_probs=135.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHH----HhhCCceEEechhhHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA----YRTAPSIVFIDEIDAI 229 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~l 229 (702)
+.+++.++||+||||||||++|+++|+.++.+++.++++++.+.+.|..+..+..+|..+ ....|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999998 4668999999999999
Q ss_pred hhcchhhh--HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeC
Q 045279 230 ASKRENLQ--REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLG 307 (702)
Q Consensus 230 ~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~ 307 (702)
.+...... ....+.+...|+..+++.......+... .....+++||+|||.++.+|++++|+|||+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~------~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN------KQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccc------cccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 87543221 1233566788999888543211111000 0123459999999999999999999999988776
Q ss_pred CCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHH
Q 045279 308 VPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 308 ~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~ 350 (702)
.|+.++|.+|++.++... ..+...++..+.+|+++++..
T Consensus 184 ~P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 579999999999877643 345778888889999888764
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-25 Score=241.95 Aligned_cols=201 Identities=22% Similarity=0.275 Sum_probs=143.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLN 501 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~ 501 (702)
|...|++++|++.+++.+...+... ..+..++.++||+||||||||++|+++|+.++ .+|+.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 5567999999999999887765432 34666789999999999999999999999998 9999999999999
Q ss_pred cCcCchHHHHHHHHHHH---HhCCCeEEEEeCcchhhcccCCCCchHHH-------------------HHHHHHHHhhh-
Q 045279 502 KYVGESELAVRTLFSRA---RTCSPCILFFDEVDALTTKRGKEGGWVVE-------------------RLLNQLLIELD- 558 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~-------------------~~~~~ll~~l~- 558 (702)
+|+|+++. ++.+|..| +...|+||||||+|.++++|+....+... ++.+.++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999998 89999999 77889999999999999988654221111 12233555554
Q ss_pred -CCCCCCcEEEEEecCCCCccCccccCCCccce--EEEcCCCC--HHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCC
Q 045279 559 -GADKRKGVFVIGATNRPDVMDRAVLRPGRFGK--LLYVPLPT--PDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633 (702)
Q Consensus 559 -~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~--~i~~~~p~--~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~ 633 (702)
+....+.++|++|||+++.+|+++.||||||. .+++|.|+ .++|.+|++.+... +++.++ ..+.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a--~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVAN--ARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHH--HhCCC-
Confidence 33445567777999999999999999999998 56777775 46677776654421 577777 45677
Q ss_pred CHHHHHHHHHH
Q 045279 634 SGADLAAMMNE 644 (702)
Q Consensus 634 sg~dl~~~~~~ 644 (702)
|+|+.++|..
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 8999999854
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=206.69 Aligned_cols=218 Identities=15% Similarity=0.203 Sum_probs=169.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGP 497 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~ 497 (702)
+.+++|++.+++.+.+.+.... .+..+.++|+.. +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999998777654 366666777554 4469999999999999999999987 3489999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC-
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD- 576 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~- 576 (702)
++.+.|+|.....+..+|..+ .++||||||+|.+...++... ...++++.|+..|+.. ..+++||++||...
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMENN--RDDLVVILAGYADRM 181 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHHC--TTTCEEEEEECHHHH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhcC--CCCEEEEEeCChHHH
Confidence 999999999999999999887 568999999999986554322 2267888999988854 45678888888653
Q ss_pred ----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhh----cCCCC-CHHHHHHHHHHHH
Q 045279 577 ----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSK----FCENL-SGADLAAMMNEAA 646 (702)
Q Consensus 577 ----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~----~~~~~-sg~dl~~~~~~a~ 646 (702)
.++|++.+ ||+.++.|++|+.+++..|++.++.+.....+.+ ++.++... ....+ ++++++++++.|+
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35799988 9999999999999999999999998766543322 33344210 01233 4799999999999
Q ss_pred HHHHHHHHh
Q 045279 647 MAALEDKLI 655 (702)
Q Consensus 647 ~~a~~~~~~ 655 (702)
..+..+...
T Consensus 260 ~~~~~r~~~ 268 (309)
T 3syl_A 260 LRQANRLFT 268 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887777654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=195.71 Aligned_cols=216 Identities=17% Similarity=0.252 Sum_probs=165.0
Q ss_pred cc-cccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEec
Q 045279 123 FQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANET-------GVPFYKISA 191 (702)
Q Consensus 123 ~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~~i~~ 191 (702)
++ +|+|++.+++.|.+.+..+.. +..+...|+. +..++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 799999999999988765432 3333334433 45679999999999999999999988 348999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|.....+..+|..+ .++||||||+|.+....+. .......+..|+..++..
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~---------------- 166 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN---------------- 166 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC----------------
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC----------------
Confidence 9999999999888888888887 4569999999999755432 122345677788888753
Q ss_pred CCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh------
Q 045279 272 DSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS------ 339 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~------ 339 (702)
+.+++||++||... .++|++++ ||+.++.|+.|+.+++.+|+..++.........+ +..++..
T Consensus 167 ---~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3syl_A 167 ---RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRN 241 (309)
T ss_dssp ---TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTT
T ss_pred ---CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 23488999998753 46899999 9999999999999999999999887665433332 3334433
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 340 -TPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 340 -t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
....+++++.++++.+...+..+++.
T Consensus 242 ~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 242 QPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 22346899999999999988888775
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-20 Score=196.04 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=160.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLN 501 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~ 501 (702)
|...|++++|.+..+..+....... ..+..++.++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4455999999999988766543222 224455689999999999999999999999874 888888877554
Q ss_pred cCcCc-------------------------------------------------hHHHHHHHHHHHHh---------CCC
Q 045279 502 KYVGE-------------------------------------------------SELAVRTLFSRART---------CSP 523 (702)
Q Consensus 502 ~~~g~-------------------------------------------------~~~~~~~~f~~a~~---------~~~ 523 (702)
.+.+. ....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 44332 23344555544432 126
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec-----------CCCCccCccccCCCccceEE
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT-----------NRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at-----------n~~~~ld~a~~r~gRf~~~i 592 (702)
+||||||+|.+. ...++.|+..++.... .++++++. |.+..+++++++ ||.. +
T Consensus 191 ~vl~IDEi~~l~-----------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i 254 (368)
T 3uk6_A 191 GVLFIDEVHMLD-----------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-V 254 (368)
T ss_dssp CEEEEESGGGSB-----------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-E
T ss_pred ceEEEhhccccC-----------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-E
Confidence 899999999998 7788888888875432 34444443 347789999999 9975 7
Q ss_pred EcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHH
Q 045279 593 YVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLT 671 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~ 671 (702)
.|++|+.+++..|++..+...+...+ ..++.++ .++.+.+.+++.++|+.|+..|..+.. ..|+.+
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~--~~~~~G~~r~~~~ll~~a~~~A~~~~~-----------~~It~~ 321 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLT--RIGLETSLRYAIQLITAASLVCRKRKG-----------TEVQVD 321 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHTTC-----------SSBCHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCHH
Confidence 99999999999999998887554322 3355666 344436889999999999888766532 279999
Q ss_pred HHHHHHhhc
Q 045279 672 HFEQALSKI 680 (702)
Q Consensus 672 d~~~al~~~ 680 (702)
|+.+|+..+
T Consensus 322 ~v~~a~~~~ 330 (368)
T 3uk6_A 322 DIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999999874
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=207.18 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=161.1
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN- 501 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~- 501 (702)
.....++++.|+++++..+.+.+........ .++.+++|+||||||||++|+++|..++.++..++++.+..
T Consensus 75 ~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147 (543)
T ss_dssp GGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchh
Confidence 3445677899999999988776544321111 14668999999999999999999999999999999877543
Q ss_pred --------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC-----------
Q 045279 502 --------KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK----------- 562 (702)
Q Consensus 502 --------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------- 562 (702)
.|+|.....+...|..+....| ||||||+|.+...++ ...++.||..|+....
T Consensus 148 ~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 148 SEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5778777778888888766555 999999999986543 2256777777764321
Q ss_pred --CCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc-----cCCCCC------CCCHHHHhhhhc
Q 045279 563 --RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR-----KKPIDD------SVDLHTIAQSKF 629 (702)
Q Consensus 563 --~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~~------~~~~~~la~~~~ 629 (702)
..+++||+|||.++.+++++++ ||+ +|.|+.|+.+++..|++.++. ...+.. +..+..++. .+
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~ 295 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YY 295 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HH
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH-hC
Confidence 1578999999999999999999 995 799999999999999988762 223221 122344443 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 630 CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 630 ~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+...+.++|++.+..++..+..+.... ......|+.+|+.+++.....
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCSCCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCCccc
Confidence 333455888888888777666665432 223457999999999986654
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=224.00 Aligned_cols=418 Identities=17% Similarity=0.220 Sum_probs=236.6
Q ss_pred CCceEEEECCCCCCHHHHHH-HHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH---------------hhCCce
Q 045279 157 PMAGILLYGPPGCGKTKLAH-AIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY---------------RTAPSI 220 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~-~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~---------------~~~p~i 220 (702)
.++++||+||||||||++|+ .++...+..++.++++...+ ...+...++... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45789999999999999995 45554467788888876532 234445554431 123469
Q ss_pred EEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCcccc
Q 045279 221 VFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPALR 295 (702)
Q Consensus 221 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al~ 295 (702)
+||||+|....+....+ . .+ +++.++-+...++...... ...-.++++|||||++. .|+|+++
T Consensus 1340 lFiDEinmp~~d~yg~q--~---~l-elLRq~le~gg~yd~~~~~------~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ--N---VV-LFLRQLMEKQGFWKTPENK------WVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEEETTTCSCCCSSSCC--H---HH-HHHHHHHHTSSEECTTTCC------EEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EEecccccccccccCch--h---HH-HHHHHHHhcCCEEEcCCCc------EEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999986443332211 1 12 2333332322222211100 00113489999999984 8999999
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-Ccc-c-HH-----------HHH-------hhCCCCCHHHHHHHHHH
Q 045279 296 RPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSF-D-LV-----------KIA-------RSTPGFVGADLAALANK 354 (702)
Q Consensus 296 r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~-~-~~-----------~la-------~~t~g~~~~dl~~l~~~ 354 (702)
| || .++.++.|+.+++..|+..++..+... ... . .. .+. +.+--|+.||+.++++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qG 1484 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRG 1484 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHH
Confidence 9 99 889999999999999998877543211 000 0 00 111 11335899999999887
Q ss_pred HHHHH----------HHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCc------
Q 045279 355 AGNLA----------MKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE------ 418 (702)
Q Consensus 355 a~~~a----------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~------ 418 (702)
..... +-|.+...+.+...+.+.....+.|+ .+-+...+...-+.....
T Consensus 1485 ll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f---------------~~~l~~~~~~~f~~~~~~~~~~~~ 1549 (2695)
T 4akg_A 1485 VYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSF---------------EQLLYETVDKYLPNQDLGNISSTS 1549 (2695)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHH---------------HHHHHHHHHHHSCCSCCCCCSTTT
T ss_pred HHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH---------------HHHHHHHHHHHhcccchhhhccCC
Confidence 65431 22333333333444443322222221 111111111111100000
Q ss_pred -cccccCCccccccCCcccchhhhHHHHH---------------HHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHH
Q 045279 419 -GFSAIPNVKWEDVGGLDYLRHEFDRYIV---------------RRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 419 -~~~~~~~~~~~~i~g~~~~k~~l~~~i~---------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+.......|.++.. +.+++.+.+.+. ..+.|.....|+...|..|+||+|++|+||++++|+
T Consensus 1550 ~~f~df~~~~Y~~v~~-~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrL 1628 (2695)
T 4akg_A 1550 LLFSGLLSLDFKEVNK-TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRF 1628 (2695)
T ss_dssp CCEESSSSSSCEECCH-HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHH
T ss_pred ceeeecCCCcceecCH-HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHH
Confidence 001111123444432 344444444442 355677777787778899999999999999999999
Q ss_pred HHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcc-----------hhhcc-cCCC--CchHHH
Q 045279 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVD-----------ALTTK-RGKE--GGWVVE 547 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid-----------~l~~~-r~~~--~~~~~~ 547 (702)
.|..+++.++++..+.-.+ ..+....++.++.+|. ...|.|++|+|.+ .+... .-.+ ..+..+
T Consensus 1629 aa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~ 1706 (2695)
T 4akg_A 1629 VAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYD 1706 (2695)
T ss_dssp HHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHH
T ss_pred HHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHH
Confidence 9999999999998765432 2345677899998885 4567788888743 22211 1111 123334
Q ss_pred HHHHHHHHhhh--CCC-CC-------------Cc-EEEEEecCCCC------ccCccccCCCccceEEEcCCCCHHHHHH
Q 045279 548 RLLNQLLIELD--GAD-KR-------------KG-VFVIGATNRPD------VMDRAVLRPGRFGKLLYVPLPTPDERGL 604 (702)
Q Consensus 548 ~~~~~ll~~l~--~~~-~~-------------~~-~~vI~atn~~~------~ld~a~~r~gRf~~~i~~~~p~~~~r~~ 604 (702)
.+++.+-.... |.. .+ .+ .+|++-+..-+ .--|++.+ ++ .+.-|..-..+.+..
T Consensus 1707 ~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn--~c-tIdWf~~Wp~eAL~~ 1783 (2695)
T 4akg_A 1707 KLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFN--RC-IINWMGDWDTKTMSQ 1783 (2695)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHH--HS-EEEECCSCCHHHHHH
T ss_pred HHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhc--ce-eEeecCCCCHHHHHH
Confidence 44444433221 221 11 12 23333332112 12366666 55 466677778889999
Q ss_pred HHHHHhccCCCC
Q 045279 605 ILEALARKKPID 616 (702)
Q Consensus 605 il~~~~~~~~~~ 616 (702)
+-..++.+....
T Consensus 1784 Va~~fl~~~~~~ 1795 (2695)
T 4akg_A 1784 VANNMVDVIPME 1795 (2695)
T ss_dssp HHHHHSCSCCCC
T ss_pred HHHHHhhccCcc
Confidence 999998876543
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=188.42 Aligned_cols=246 Identities=22% Similarity=0.275 Sum_probs=170.4
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
+.++|++.+++.+...+..+.......... ....+.+++|+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458899999999888776643332211111 1135678999999999999999999999999999999999876 56664
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCCC--------CCCcEEEEEe
Q 045279 507 S-ELAVRTLFSRA-----RTCSPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGAD--------KRKGVFVIGA 571 (702)
Q Consensus 507 ~-~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~~--------~~~~~~vI~a 571 (702)
. ...++.++..+ ....++||||||+|.+............ ..+++.|+..|++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 1124689999999999977654433332 345788888888642 2346788888
Q ss_pred ----cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH----H-------hccCCC---CCCCCHHHHhhhhc----
Q 045279 572 ----TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA----L-------ARKKPI---DDSVDLHTIAQSKF---- 629 (702)
Q Consensus 572 ----tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~----~-------~~~~~~---~~~~~~~~la~~~~---- 629 (702)
++.+..+++++++ ||+..+.|++|+.+++..|++. + +..... -.+..++.++....
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4567889999998 9998899999999999999983 1 112221 12233555663321
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 630 -CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 630 -~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+...+.+.+.++|+.++..+.-+... .......|+.+|+..|+....
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhhh
Confidence 12567799999999887655433321 111233599999999998764
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=195.85 Aligned_cols=245 Identities=19% Similarity=0.262 Sum_probs=170.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHH-cC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc-CcCc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEE-FG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK-YVGE 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~-~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~g~ 506 (702)
.++|++.+++.+...+............ .. ..++.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3789999999888877544322211100 01 1256889999999999999999999999999999999998754 7777
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCC-----------------
Q 045279 507 S-ELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGAD----------------- 561 (702)
Q Consensus 507 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~----------------- 561 (702)
. ...++.+|..+ ....++||||||+|.+.+.+.... ......+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55567777665 334678999999999998765432 1233458999999999531
Q ss_pred --CCCcEEEEEecCCC----------Cc-----------------------------------cCccccCCCccceEEEc
Q 045279 562 --KRKGVFVIGATNRP----------DV-----------------------------------MDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 562 --~~~~~~vI~atn~~----------~~-----------------------------------ld~a~~r~gRf~~~i~~ 594 (702)
...++++|+++|.. .. ++|+|++ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22344555555532 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 595 PLPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
++|+.+++..|+.. +++ ..... .+..++.++...+...+++++|+++++.++..++.+... .
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~----~ 329 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS----M 329 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT----C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999876 222 11221 222355666544556778899999999999888776532 1
Q ss_pred CCCCCccccHHHHHHHHhhc
Q 045279 661 SDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~ 680 (702)
.......|+.+++++.+...
T Consensus 330 ~~~~~~~I~~~~v~~~~~~~ 349 (363)
T 3hws_A 330 EDVEKVVIDESVIDGQSEPL 349 (363)
T ss_dssp CCSEEEECHHHHTTCCSCCE
T ss_pred cCCceeEEcHHHHhCcCCce
Confidence 22245578888887766543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-20 Score=223.04 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=112.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhC----------hHHHHH------cCCC----------CCcc--eEEEcCCCCC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKF----------PEEYEE------FGVD----------LETG--FLLYGPPGCG 475 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--~ll~Gp~GtG 475 (702)
+.+.|++++|++++|+.+.+.+.+++++ ++.+.. .|.. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999999854 445555 2222 3444 9999999999
Q ss_pred hhHHHHHHHHHh---CCeEEEEeccccc------------ccCcCc----hHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 476 KTLIAKAVANEA---GANFIHIKGPELL------------NKYVGE----SELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 476 KT~la~~la~~~---~~~~~~i~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
||++|++++.+. +.+.+.|+..+.. ++|+++ +++.++.+|.+|+...||+||+||+++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999866 5555566655543 667888 899999999999999999999999999998
Q ss_pred cc---CCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 537 KR---GKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 537 ~r---~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.+ +.. ......++++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 83 221 2256688999999999987777788887 77763
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-20 Score=201.47 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCC-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
++|+|++.+|+.+..++..++++...+..+.. .++.++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999888777666555444333 25689999999999999999999999999999999999988 59995
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe-cCCCCccCccccC
Q 045279 507 -SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA-TNRPDVMDRAVLR 584 (702)
Q Consensus 507 -~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a-tn~~~~ld~a~~r 584 (702)
.+..++.+|..+.. ++++||++.+... ......++++++||..||+......+ +++ ||+++.||++++|
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 89999999999876 4468998876532 23345589999999999998765554 444 9999999999999
Q ss_pred CCccceEEEcCCCCHH-HHHHHH
Q 045279 585 PGRFGKLLYVPLPTPD-ERGLIL 606 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~-~r~~il 606 (702)
|||||+.|++++|+.. .|.+|+
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------
T ss_pred CCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999987 677765
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=179.51 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=161.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+..|++++|.+.+++.+...+..... ...++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 345789999999999988877655421 224567899999999999999999999999999999987653
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC----------------CCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK----------------RKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------------~~~~~ 567 (702)
....+..++.. ...+++|||||++.+. ...++.|+..|+.... ..+++
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 22233344432 2467999999999998 6777888887775321 12489
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
+|++||....+++++++ ||+..+.+++|+.+++..+++.++.......+ ..++.++. .+ .-+.+.+.++++.+.
T Consensus 157 ~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~--~~-~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK--RS-RSTPRIALRLLKRVR 231 (338)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH--TT-TTCHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HH-CcCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999887664322 23445552 23 335578888888776
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..+.... ...|+.+++..++.....
T Consensus 232 ~~a~~~~-----------~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 232 DFADVND-----------EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHTT-----------CSEECHHHHHHHHHHHTC
T ss_pred HHHHhhc-----------CCccCHHHHHHHHHHhCC
Confidence 5554321 126888888888876543
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=175.82 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=146.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSG 200 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g 200 (702)
.+|++++|.+.+++.+...+..... ...+..++||+||||||||++|+++++.++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 3899999999999999988754322 123456899999999999999999999999999999998753
Q ss_pred ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 201 ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 201 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
....+...+.. ...+++|||||||.+... ....|+..+++.......+............+ ++++
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-----------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLSPA-----------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTL 157 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCC---------CCCCCCCCC-CCEE
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcCHH-----------HHHHHHHHHHhccchhhcccCccccceecCCC-CeEE
Confidence 22333344433 245679999999988632 34456777765432111111111111111122 4899
Q ss_pred EEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 281 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 281 I~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
|++||....+++++++ ||+..+.+++|+.+++..++...+........ ..+..++..+.| +.+.+.+++..+...+
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999988876554322 235667775555 6678888877765443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=174.37 Aligned_cols=201 Identities=23% Similarity=0.289 Sum_probs=140.5
Q ss_pred HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCch----HHHHHHHHHHHHhCCCeEEEEeC
Q 045279 455 YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES----ELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 455 ~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~----~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
+...+..++.++||+||||||||++|+++|..++.+|+.+++++. +.|.. ...++.+|..+....++||||||
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 132 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 132 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 334456778899999999999999999999999999999988763 33433 35678889988877899999999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCccCc-cccCCCccceEEEcCCCCH-HHHHHHHH
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMDR-AVLRPGRFGKLLYVPLPTP-DERGLILE 607 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ld~-a~~r~gRf~~~i~~~~p~~-~~r~~il~ 607 (702)
+|.+.+.+.... .....+++.|...+++.. ...+++||+|||.++.+++ .+.+ ||+..+.+|+++. ++...++.
T Consensus 133 id~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 133 IERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp HHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHH
T ss_pred hhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHH
Confidence 999976554222 122566777777777653 3457889999999999988 4555 9999999988776 44444444
Q ss_pred HHhccCCCCCCCCHHHHhhhhcCCCC----CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 608 ALARKKPIDDSVDLHTIAQSKFCENL----SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 608 ~~~~~~~~~~~~~~~~la~~~~~~~~----sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
. ...+ .+.++..++ ..+.|| +-+++.++++.|...+ .....++|..++.....+
T Consensus 210 ~---~~~~-~~~~~~~l~--~~~~g~~~~g~ir~l~~~l~~a~~~~----------------~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 210 L---LGNF-KDKERTTIA--QQVKGKKVWIGIKKLLMLIEMSLQMD----------------PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp H---HTCS-CHHHHHHHH--HHHTTSEEEECHHHHHHHHHHHTTSC----------------GGGHHHHHHHHHHHTSCC
T ss_pred h---cCCC-CHHHHHHHH--HHhcCCCccccHHHHHHHHHHHhhhc----------------hHHHHHHHHHHHHHcCCc
Confidence 3 2222 344566677 445666 4456666655443211 135567788887776543
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=179.70 Aligned_cols=203 Identities=21% Similarity=0.248 Sum_probs=140.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVV 195 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~ 195 (702)
.+..+|++++|.+.+++.+...+.. +. .+..++.++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-IR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-HH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-HH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3444699999999999886644322 21 14445689999999999999999999999974 78888876643
Q ss_pred ccc-------------------------------------------------ccccHHHHHHHHHHHHh-----h----C
Q 045279 196 SGV-------------------------------------------------SGASEENIRDLFSKAYR-----T----A 217 (702)
Q Consensus 196 ~~~-------------------------------------------------~g~~~~~~~~~f~~a~~-----~----~ 217 (702)
..+ .|.....++..|..+.. + .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 322 22223445555555432 1 1
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec-----------CC
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT-----------NR 286 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at-----------n~ 286 (702)
|+||||||+|.+... ....|+..+++. +..++++++. |.
T Consensus 190 ~~vl~IDEi~~l~~~-----------~~~~L~~~le~~-------------------~~~~~ii~t~~~~~~i~~t~~~~ 239 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-----------SFSFLNRALESD-------------------MAPVLIMATNRGITRIRGTSYQS 239 (368)
T ss_dssp BCEEEEESGGGSBHH-----------HHHHHHHHTTCT-------------------TCCEEEEEESCSEEECBTSSCEE
T ss_pred CceEEEhhccccChH-----------HHHHHHHHhhCc-------------------CCCeeeeecccceeeeeccCCCC
Confidence 679999999988632 334566666542 1224444443 34
Q ss_pred CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 287 PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 287 ~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
+..+++++++ ||.. +.|++|+.+++.+|+...+........ ..+..+++.+.+.+++++.++++.|...+..
T Consensus 240 ~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 240 PHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp ETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7789999999 9954 899999999999999988776544322 3366677777757899999999988776643
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=184.14 Aligned_cols=226 Identities=22% Similarity=0.247 Sum_probs=155.7
Q ss_pred CccccccCCcccch---hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLR---HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
...|++++|++.++ ..+...+... ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 45788999999887 5555544321 2268999999999999999999999999999998643
Q ss_pred cCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCC
Q 045279 502 KYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRP 575 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~ 575 (702)
.+...++.++..+.. ..++||||||+|.+. ...++.|+..++. ..+++|++| |..
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~----~~v~lI~att~n~~ 146 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED----GTITFIGATTENPS 146 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGG
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc----CceEEEecCCCCcc
Confidence 234456677766652 468999999999997 4456677777774 346677666 445
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC--------CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID--------DSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--------~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
..+++++++ ||. ++.|++|+.+++..+++..+...... .+..++.++. ++ +-+.+.+.++++.++.
T Consensus 147 ~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~--~~-~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 147 FELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAE--LV-NGDARRALNTLEMMAD 220 (447)
T ss_dssp GSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHH--HH-CSCHHHHHHHHHHHHH
T ss_pred cccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHH--HC-CCCHHHHHHHHHHHHH
Confidence 689999999 886 78899999999999999998762211 1122445552 22 2245666666666553
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
.+... ......|+.+++.+++++........+..+|+.+++..+
T Consensus 221 ~a~~~---------~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~k 264 (447)
T 3pvs_A 221 MAEVD---------DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHK 264 (447)
T ss_dssp HSCBC---------TTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHH
T ss_pred hcccc---------cCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHH
Confidence 32100 012237999999999999888787777888888887665
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=175.14 Aligned_cols=225 Identities=25% Similarity=0.315 Sum_probs=150.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCccccc-CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWL-GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~ 201 (702)
++|+|++.+++.+...+..++..+.+...+ ....+.++||+||||||||++|+++++.++.+++.++++.+.. ++.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999998886655444332211 1235678999999999999999999999999999999999876 55554
Q ss_pred c-HHHHHHHHHHH-----HhhCCceEEechhhHhhhcchhhhH-HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 202 S-EENIRDLFSKA-----YRTAPSIVFIDEIDAIASKRENLQR-EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 202 ~-~~~~~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
. ...+..++..+ ....++||||||+|.+......... .....+...|+..+++.......+ ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~---------~~~ 165 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG---------MVK 165 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE---------EEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc---------ccc
Confidence 3 33455555532 1123569999999999876532222 222345667888887532111000 001
Q ss_pred CCeEEEEEec----CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh----c---------CcccC-CcccHHHH
Q 045279 275 PGYVLVIGAT----NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT----R---------NLRVE-GSFDLVKI 336 (702)
Q Consensus 275 ~~~v~vI~at----n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~----~---------~~~~~-~~~~~~~l 336 (702)
..++++|+++ +.+..++|++++ ||+..+.|++|+.+++.+|++... . ..... ....+..+
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 2347888884 567789999999 999889999999999999998421 1 11111 11224444
Q ss_pred HhhC-------CCCCHHHHHHHHHHHHHHH
Q 045279 337 ARST-------PGFVGADLAALANKAGNLA 359 (702)
Q Consensus 337 a~~t-------~g~~~~dl~~l~~~a~~~a 359 (702)
+..+ .+.+.+.+.++++.++..+
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 4443 3567888888888776544
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=180.74 Aligned_cols=245 Identities=20% Similarity=0.202 Sum_probs=156.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHH-----------------HcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYE-----------------EFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~-----------------~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
+.++|++.+++.+...+...+....... .....++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999999999887754333322111 11234567899999999999999999999999999
Q ss_pred EEEeccccc-ccCcCch-HHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCC-
Q 045279 492 IHIKGPELL-NKYVGES-ELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGAD- 561 (702)
Q Consensus 492 ~~i~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~- 561 (702)
+.++++.+. ..|+|.. +..+..++..+ ....++||||||+|.+...+..... .....+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998876 3466653 34455555432 2336799999999999876432211 111347889999998641
Q ss_pred ------------------CCCcEEEEEecCCC-----------------------------------------CccCccc
Q 045279 562 ------------------KRKGVFVIGATNRP-----------------------------------------DVMDRAV 582 (702)
Q Consensus 562 ------------------~~~~~~vI~atn~~-----------------------------------------~~ld~a~ 582 (702)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12556778887621 1245666
Q ss_pred cCCCccceEEEcCCCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHH
Q 045279 583 LRPGRFGKLLYVPLPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMA 648 (702)
Q Consensus 583 ~r~gRf~~~i~~~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~ 648 (702)
++ ||+.++.|++++.++...|+.. +++ ..... .+..++.++........+.+.|+++|..++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 9999999999999999998862 211 11111 12234566654343456789999999999988
Q ss_pred HHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 649 ALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 649 a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++.+.... ......|+.+++..+...+
T Consensus 339 ~~~~~~~~-----~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 339 IMFDLPKL-----KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHTGGGG-----TTSEEEECHHHHTTSSCCE
T ss_pred HHhhccCC-----CCCEEEEeHHHhcCCCCce
Confidence 87765432 1233468999988765443
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-17 Score=170.80 Aligned_cols=215 Identities=21% Similarity=0.274 Sum_probs=153.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+..|++++|.+..++.+...+.... . ....+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4478899999998888877665431 1 1134578999999999999999999999999999999877532
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
...+...|..+ ...+++|||||++.+. ...+..|+..++... ...++++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 22233333321 1467899999999988 556666776666431 1135789
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||.+..+++++.+ ||+.++.+++|+.+++..++..++...+...+ ..++.++ .++.| +.+.+.++++.+..
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIG--RRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH--HHSCS-CHHHHHHHHHHHTT
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHccC-CHHHHHHHHHHHHH
Confidence 9999999999999988 99889999999999999999999887654432 2345555 33434 45778888776653
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+... ....|+.+++..++....
T Consensus 217 ~a~~~-----------~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 217 FAQVA-----------GEEVITRERALEALAALG 239 (324)
T ss_dssp TSTTT-----------SCSCCCHHHHHHHHHHHT
T ss_pred HHHHh-----------cCCCCCHHHHHHHHHHhc
Confidence 33211 122578888888776654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=193.63 Aligned_cols=219 Identities=24% Similarity=0.249 Sum_probs=143.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-----
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS----- 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~----- 196 (702)
.+++++|++++++.+.+.+......... ++.+++|+||||||||++|++||+.++.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4577999999999998776554333222 5678999999999999999999999999999999877543
Q ss_pred ----ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCC
Q 045279 197 ----GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDA 270 (702)
Q Consensus 197 ----~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~ 270 (702)
.+.|.....+...|..+....| |+||||||.+....+. .....|+..|+.... +...+... .
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~---~- 219 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEE---T- 219 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCC---C-
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCe---e-
Confidence 3556666666667777654555 9999999999865432 123446666654321 11110000 0
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-----cccC------CcccHHHHHh-
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-----LRVE------GSFDLVKIAR- 338 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-----~~~~------~~~~~~~la~- 338 (702)
....+++||+|||.++.++|+|++ || .+|.|+.|+.+++.+|+..++.. .... ....+..++.
T Consensus 220 --~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 220 --FDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp --CBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred --ecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 011458999999999999999999 99 57999999999999999876522 1111 1122444444
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 339 STPGFVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 339 ~t~g~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
.+.....++|++.+..++..+..+.+
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHH
Confidence 34346778898888888777666554
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=167.81 Aligned_cols=205 Identities=21% Similarity=0.297 Sum_probs=136.1
Q ss_pred cccccCHHHHHHHHHHH---hhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 123 FQDLGGMESVLEELKME---VIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~---v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
...++|.++..+.+... +...+. ..+..++.++||+||||||||++|+++|+.++.+++.+++.+...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 35677877776666653 212121 123456789999999999999999999999999999998876432221
Q ss_pred -cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 200 -GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 200 -g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
+.....+..+|..+....+++|||||||.+.+..... ......++..|...++.... .+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~----------------~~~~~ 168 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPP----------------QGRKL 168 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCS----------------TTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccC----------------CCCCE
Confidence 2223567788888877778999999999996543221 11223445555555443211 23458
Q ss_pred EEEEecCCCCCCCc-cccCCCCcceEEEeCCCCH-HHHHHHHHHhhcCcccCCcccHHHHHhhCCCC----CHHHHHHHH
Q 045279 279 LVIGATNRPDAVDP-ALRRPGRFDREIVLGVPDE-NARVQILSVLTRNLRVEGSFDLVKIARSTPGF----VGADLAALA 352 (702)
Q Consensus 279 ~vI~atn~~~~ld~-al~r~~Rf~~~i~~~~p~~-~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~----~~~dl~~l~ 352 (702)
+||+|||.++.+++ .+++ ||...+.+|+++. ++...++.. ...+ ....+..+++.+.|| +.+++.+++
T Consensus 169 ~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 99999999988888 6777 9988888876665 444444433 2222 234577788888887 567777766
Q ss_pred HHHH
Q 045279 353 NKAG 356 (702)
Q Consensus 353 ~~a~ 356 (702)
+.|.
T Consensus 243 ~~a~ 246 (272)
T 1d2n_A 243 EMSL 246 (272)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6553
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=173.07 Aligned_cols=209 Identities=22% Similarity=0.257 Sum_probs=148.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc---
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--- 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--- 502 (702)
..+.|.+.+++.+...+....... .....+..+++|+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 457888888888877765542110 0011234579999999999999999999988 567999998876542
Q ss_pred ---------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCC
Q 045279 503 ---------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRK 564 (702)
Q Consensus 503 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~ 564 (702)
|+|.... ..+.......+++||||||+|.+. ..+++.|+..|+... ...
T Consensus 93 ~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 1121110 123344445567999999999998 788899998887532 113
Q ss_pred cEEEEEecCC--------------------------CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-----
Q 045279 565 GVFVIGATNR--------------------------PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----- 613 (702)
Q Consensus 565 ~~~vI~atn~--------------------------~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----- 613 (702)
++++|+|||. ...+++++++ ||+.++.|++|+.+++..|++.++.+.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998 4578888888 999999999999999999999877652
Q ss_pred --CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 614 --PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 614 --~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
... .+..++.++...+...++.++|+++|+.++..++.+....
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 111 1223455553333235677999999999999888877654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=172.67 Aligned_cols=236 Identities=25% Similarity=0.272 Sum_probs=151.1
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCc--ccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-cccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQL--PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-VSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~--~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-~~g~ 201 (702)
.|+|++.+++.+...+......... .......++.++||+||||||||++|++||+.++.+|+.++++++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3699999999999877433221110 000112357899999999999999999999999999999999998754 6666
Q ss_pred c-HHHHHHHHHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCC-CCCC-CCCCCC
Q 045279 202 S-EENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQP-GDQK-SKSDAS 271 (702)
Q Consensus 202 ~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~-~~~~~~ 271 (702)
. ...+..+|..+ ....++||||||||.+...+... .+.....+...|+..|++....+.. ++.. ......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 44556666654 33456799999999998765332 2233355888999999843221111 1110 011111
Q ss_pred CCCCCeEEEEEecCCC----------CC-----------------------------------CCccccCCCCcceEEEe
Q 045279 272 DSKPGYVLVIGATNRP----------DA-----------------------------------VDPALRRPGRFDREIVL 306 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~~Rf~~~i~~ 306 (702)
.-...++++|+++|.. .. +.|+|.+ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1123346677776642 11 6888888 99999999
Q ss_pred CCCCHHHHHHHHHH----hhcCc-------cc--CCc-ccHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSV----LTRNL-------RV--EGS-FDLVKIAR--STPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 307 ~~p~~~er~~Il~~----~~~~~-------~~--~~~-~~~~~la~--~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
.+|+.+++.+|+.. ++..+ .. ... ..+..++. ....+..|+|++++.+++..++.+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999986 22211 11 111 12444553 335566789999988887765543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=181.73 Aligned_cols=182 Identities=21% Similarity=0.336 Sum_probs=127.9
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-+|++|+|.+..++.+.+.+. ....+++||+||||||||++|+++|+.+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 379999999999999987762 2446789999999999999999999997 77899998
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
++ ..+.|.++..++.+|..+....+.||||| ... ...+.|+..++
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~~---------~a~~~L~~~L~----------------- 288 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AAI---------DASNILKPSLA----------------- 288 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT-----------------
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cch---------hHHHHHHHhhc-----------------
Confidence 88 56778888888999999988888999999 000 01112222222
Q ss_pred CCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHhhC
Q 045279 271 SDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIARST 340 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~~t 340 (702)
.+.++||++||..+ .+++++++ ||. .|.|+.|+.+++..|++.++..+...+.. .+..++..+
T Consensus 289 ----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 289 ----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHH
T ss_pred ----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34589999999987 79999999 995 69999999999999999888775432222 233344332
Q ss_pred -----CCCCHHHHHHHHHHHHH
Q 045279 341 -----PGFVGADLAALANKAGN 357 (702)
Q Consensus 341 -----~g~~~~dl~~l~~~a~~ 357 (702)
..+.+.....+++.|..
T Consensus 362 ~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 362 DRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhccCcCCcHHHHHHHHHHH
Confidence 33445566677776653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=157.64 Aligned_cols=157 Identities=22% Similarity=0.367 Sum_probs=115.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+|++++|.++.++++.+.+. ...+.+++|+||||||||++++++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 79999999999999987662 2345789999999999999999999986 678899999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
..+.. .+.+.....+..++..+.. ..+.+|||||+|.+......... ..+...+...++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~--------------- 148 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA--------------- 148 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH---------------
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc---------------
Confidence 88763 3455566667777776644 45779999999999754321100 111222333332
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQIL 318 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il 318 (702)
.+++.+|++||.+. .+++++++ ||. .+.++.|+.+++.+|+
T Consensus 149 ------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 ------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 12377888888865 78999999 996 6999999999998875
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=161.69 Aligned_cols=206 Identities=24% Similarity=0.307 Sum_probs=141.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|.+.+++.+...+..... ......++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 33899999999999999877743211 1134578999999999999999999999999999999877532
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
...+...|..+ ...+++|||||+|.+... ....|+..++........+......... ....+++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~-~~~~~~~ 140 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIR-LELPRFT 140 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEE-EECCCCE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccc-cCCCCEE
Confidence 22333333321 135679999999988632 2334666666543211111100000000 0112488
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+|++||.+..+++++.+ ||..++.++.|+.+++.+++..++........ ..+..++..+.| +++.+.+++..+
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 99999999999999999 99888999999999999999988876554332 235667777765 557777776654
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=165.78 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=136.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE----Eecccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH----IKGPEL 499 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~----i~~~~l 499 (702)
+...|+++.|.+.++..+..... .....++||+||||||||++|++++..++..... +++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~-------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAV-------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhh-------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 56689999999887664322111 0124569999999999999999999988631100 111110
Q ss_pred ---------------------cccCcCchHHHH------HHHHHHH---------HhCCCeEEEEeCcchhhcccCCCCc
Q 045279 500 ---------------------LNKYVGESELAV------RTLFSRA---------RTCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 500 ---------------------~~~~~g~~~~~~------~~~f~~a---------~~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
.....+.+...+ ...+... ....++||||||++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-------- 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-------- 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------
Confidence 000111112111 1122111 11147899999999998
Q ss_pred hHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCC-CHHHHHHHHHHHh
Q 045279 544 WVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLP-TPDERGLILEALA 610 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p-~~~~r~~il~~~~ 610 (702)
...++.|+..|+... ...++++|+|||..+ .+++++++ ||+..+.+++| +.+++..|++..+
T Consensus 158 ---~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 ---DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ---HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 667778887776420 113789999999754 89999999 99988999999 5777778886531
Q ss_pred c-----------------------------cCCCC-CCCCHHHHhhhhcCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 611 R-----------------------------KKPID-DSVDLHTIAQSKFCENL-SGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 611 ~-----------------------------~~~~~-~~~~~~~la~~~~~~~~-sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
. ...+. .+..++.++......+. +.+.+.++++.|...|..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~----- 307 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA----- 307 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC-----
Confidence 1 01111 12223444432222233 568888888888766654432
Q ss_pred CCCCCCccccHHHHHHHHhhc
Q 045279 660 SSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~ 680 (702)
..|+.+|+..|+..+
T Consensus 308 ------~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 308 ------TAVGRDHLKRVATMA 322 (350)
T ss_dssp ------SBCCHHHHHHHHHHH
T ss_pred ------CcCCHHHHHHHHHHH
Confidence 269999999998865
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=189.12 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=98.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccC----------CCcccc------cC------------CCCCceEEEECCCCC
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYH----------PQLPQW------LG------------VRPMAGILLYGPPGC 169 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~----------~~~~~~------~~------------~~~~~~vLl~GppGt 169 (702)
...++|+++.|++++|+.+.+.+.+|+.+ ++.++. .| ++.++.+|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44579999999999999999999988843 445544 22 445666999999999
Q ss_pred CHHHHHHHHHHHh---CCCeEEEechhhh------------cccccc----cHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 170 GKTKLAHAIANET---GVPFYKISATEVV------------SGVSGA----SEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 170 GKT~la~~la~~l---~~~~~~i~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
|||+||++++.+. +.+.+.|+..... +.|.++ .++.+..+|..|+...|+++|+|+++.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998765 4566666665433 446666 78889999999999999999999999999
Q ss_pred hcchh---h---hHHHHHHHHHHHHHHHhhhc
Q 045279 231 SKREN---L---QREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 231 ~~~~~---~---~~~~~~~~~~~ll~~ld~~~ 256 (702)
+.+.. . +.....|++.+++..++...
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~ 1205 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhh
Confidence 87431 1 12455678888988888744
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=163.71 Aligned_cols=223 Identities=20% Similarity=0.181 Sum_probs=149.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPEL 499 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l 499 (702)
+++.|.+...+.+...+...+ ....+.+++|+||||||||++++.+++.+ +.+++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 667888877776665442211 12456789999999999999999999988 888999998754
Q ss_pred ccc----------------CcCchHHH-HHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC
Q 045279 500 LNK----------------YVGESELA-VRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD 561 (702)
Q Consensus 500 ~~~----------------~~g~~~~~-~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 561 (702)
.+. +.|.+... ...++..+... .|+||||||+|.+...+ ...+.+..++..++...
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELG 163 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcC
Confidence 321 12322333 44444444333 47899999999998542 01566777777665443
Q ss_pred CCCcEEEEEecCCC---CccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhcc--CCCC-CCCCHHHHhhhhcCC--C
Q 045279 562 KRKGVFVIGATNRP---DVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARK--KPID-DSVDLHTIAQSKFCE--N 632 (702)
Q Consensus 562 ~~~~~~vI~atn~~---~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~--~~~~-~~~~~~~la~~~~~~--~ 632 (702)
...++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++..|++..+.. .... .+..++.++. .+. .
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 239 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAA--LAAREH 239 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHH--HHHSSS
T ss_pred CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHhc
Confidence 24578889999887 678899988 8875 8999999999999999988764 2222 2333555653 222 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 633 LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 633 ~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
-+.+.+.++|+.|+..|..+. ...|+.+|+..|+....
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~-----------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRR-----------EERVRREHVYSARAEIE 277 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-----------CSCBCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcC-----------CCCcCHHHHHHHHHHHh
Confidence 244667788888876554432 12699999999988763
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=192.13 Aligned_cols=417 Identities=17% Similarity=0.201 Sum_probs=225.2
Q ss_pred CCceEEEECCCCCCHHHHHHHH-HHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH----------------hhCCc
Q 045279 157 PMAGILLYGPPGCGKTKLAHAI-ANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY----------------RTAPS 219 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~l-a~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----------------~~~p~ 219 (702)
.+.++||+||||||||+++... ++..+.+++.++++.-.+ ...+.+.++... .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4577999999999999877654 444456677888876432 234444444311 02235
Q ss_pred eEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCccc
Q 045279 220 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPAL 294 (702)
Q Consensus 220 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al 294 (702)
|+||||++.-..+.-+.+ ..+.-|...+| ...+++..... .....++.+|||+|++. .+++++
T Consensus 1377 VlFiDDiNmp~~D~yGtQ-----~~ielLrqlld-~~g~yd~~~~~------~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ-----RVITFIRQMVE-KGGFWRTSDHT------WIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC-----HHHHHHHHHHH-HSEEEETTTTE------EEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEEecccCCCCccccccc-----cHHHHHHHHHH-cCCeEECCCCe------EEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 999999985443321111 12223333343 33344332111 11123489999999973 699999
Q ss_pred cCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc-CCccc--HHHHH------------------hhCCCCCHHHHHHHHH
Q 045279 295 RRPGRFDREIVLGVPDENARVQILSVLTRNLRV-EGSFD--LVKIA------------------RSTPGFVGADLAALAN 353 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~-~~~~~--~~~la------------------~~t~g~~~~dl~~l~~ 353 (702)
.| || .++.++.|+.++...|+..++....- ..... ...++ +.+--|+.||+.++++
T Consensus 1445 ~r--~F-~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~q 1521 (3245)
T 3vkg_A 1445 LR--HA-PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDR 1521 (3245)
T ss_dssp HT--TC-CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHH
T ss_pred Hh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHH
Confidence 99 99 67999999999999998765543210 00000 01111 1134579999999988
Q ss_pred HHHHH----------HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc-----Cc
Q 045279 354 KAGNL----------AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR-----RE 418 (702)
Q Consensus 354 ~a~~~----------a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~-----~~ 418 (702)
..... .+-|.+...+.+...|.+.....+.|+.. -+...+...-+... +.
T Consensus 1522 Gll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~---------------~l~~~~~~~F~~~~~~~~~~p 1586 (3245)
T 3vkg_A 1522 ALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDK---------------KIDEVALKHFPSVNLDALKRP 1586 (3245)
T ss_dssp HHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHH---------------HHHHHHHHHCTTSCGGGGCSS
T ss_pred HHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------HHHHHHHHhcCcchhhhcccC
Confidence 76543 12344444444444444443322222211 11111111101000 00
Q ss_pred -cccccCCccccccCCcccchhhhHHHH---------------HHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHH
Q 045279 419 -GFSAIPNVKWEDVGGLDYLRHEFDRYI---------------VRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 419 -~~~~~~~~~~~~i~g~~~~k~~l~~~i---------------~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+...-...|..+ ..+.++..+.+.+ ...+.|.....|+-..|..|+||+|..|+||++++|.
T Consensus 1587 llf~~f~~~~Y~~v-~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrL 1665 (3245)
T 3vkg_A 1587 ILYSNWLTKDYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRF 1665 (3245)
T ss_dssp CCCCSSCC----CC-CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHH
T ss_pred cchhhhccccCccC-CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHH
Confidence 0000001112222 1222333332222 2345566677777778899999999999999999999
Q ss_pred HHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcch-----------hhcc-cCCC--CchHHH
Q 045279 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVDA-----------LTTK-RGKE--GGWVVE 547 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~-----------l~~~-r~~~--~~~~~~ 547 (702)
.|...++.++.+..+.-++ ..+....++.++.+|. ...|.|++|+|.+- +... .-.+ ..+...
T Consensus 1666 Aa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~ 1743 (3245)
T 3vkg_A 1666 VAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFT 1743 (3245)
T ss_dssp HHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHH
T ss_pred HHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHH
Confidence 9999999999987655322 3355667889998885 45677888887432 2211 1111 112334
Q ss_pred HHHHHHHHhhh--CC----------------CCCCcEEEEEecCCCCc------cCccccCCCccceEEEcCCCCHHHHH
Q 045279 548 RLLNQLLIELD--GA----------------DKRKGVFVIGATNRPDV------MDRAVLRPGRFGKLLYVPLPTPDERG 603 (702)
Q Consensus 548 ~~~~~ll~~l~--~~----------------~~~~~~~vI~atn~~~~------ld~a~~r~gRf~~~i~~~~p~~~~r~ 603 (702)
.+++.+-.... |. ..+=+|++ +-+.--+. --|++.+ ++. +.-|..-..+.+.
T Consensus 1744 ~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL-~mSPvg~~fR~R~r~fPaLvn--cct-IDWf~~Wp~eAL~ 1819 (3245)
T 3vkg_A 1744 ALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVF-TMNPASPDFHNRSATSPALFN--RCV-LDWFGEWSPEALF 1819 (3245)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEE-EECTTSTTTTC----CTHHHH--HSE-EEEEESCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEE-EECCCCHHHHHHHHHChHHhh--Cce-eeecCCCCHHHHH
Confidence 44443332211 11 11122333 33322222 2255655 553 5567777788898
Q ss_pred HHHHHHhccCCCC
Q 045279 604 LILEALARKKPID 616 (702)
Q Consensus 604 ~il~~~~~~~~~~ 616 (702)
.+-..++....+.
T Consensus 1820 ~Va~~fl~~~~l~ 1832 (3245)
T 3vkg_A 1820 QVGSEFTRNLDLE 1832 (3245)
T ss_dssp HHHHHHTTTSCCC
T ss_pred HHHHHHHhhcccc
Confidence 9988888876543
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=169.70 Aligned_cols=181 Identities=23% Similarity=0.342 Sum_probs=130.5
Q ss_pred CCcccccCHHHHH---HHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVL---EELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+|++++|++.++ ..+...+.. + ...++||+||||||||++|++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 4899999999999 677766632 1 22679999999999999999999999999999987542
Q ss_pred cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
....++.+|..+.. ..+.||||||||.+....+ ..|+..++.
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~------------------- 132 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIED------------------- 132 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------------------
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhc-------------------
Confidence 23445666666543 4678999999998865432 346777764
Q ss_pred CCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc-------cCC-cccHHHHHhhCCCC
Q 045279 274 KPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR-------VEG-SFDLVKIARSTPGF 343 (702)
Q Consensus 274 ~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~-------~~~-~~~~~~la~~t~g~ 343 (702)
+.+++|++| |....+++++++ |+ .++.|+.|+.+++..++...+.... ... ...+..++..+.|
T Consensus 133 --~~v~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G- 206 (447)
T 3pvs_A 133 --GTITFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG- 206 (447)
T ss_dssp --TSCEEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-
T ss_pred --CceEEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-
Confidence 236777777 445689999999 98 5788999999999999998877522 111 1235667777555
Q ss_pred CHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGN 357 (702)
Q Consensus 344 ~~~dl~~l~~~a~~ 357 (702)
+.+.+.++++.+..
T Consensus 207 d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 207 DARRALNTLEMMAD 220 (447)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777776654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=169.86 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=134.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|.......++||||||++.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 78899999888755443322211112333333336889999999999843
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
...+..|+..++........+||++.+.+.. +++++++ ||. .++.+++|+.++|..|++..+..
T Consensus 210 ---------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1334444444443323344555555454554 8889988 886 78999999999999999998876
Q ss_pred CCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 613 KPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 613 ~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.++..+ ..++.++. .+ +-+.+++.++++.+...|.... ..|+.+++.++++...+
T Consensus 279 ~~~~i~~e~l~~la~--~~-~gn~R~l~~~L~~~~~~a~~~~------------~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 279 EHGELPEEVLNFVAE--NV-DDNLRRLRGAIIKLLVYKETTG------------KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HTCCCCTTHHHHHHH--HC-CSCHHHHHHHHHHHHHHHHHSS------------SCCCHHHHHHHTSTTTC
T ss_pred cCCCCCHHHHHHHHH--hc-CCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHHHhh
Confidence 544332 33567773 34 3477899999988876654321 15999999999998764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=158.94 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=132.8
Q ss_pred CCCCccccc-C--HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 119 EGPRFQDLG-G--MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 119 ~~~~~~~i~-G--~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
+..+|++++ | ...+...+...+..+ ....++++|+||||||||++++++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 455899997 4 444555555444221 1245789999999999999999999998 8999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++...+.+.........|.... ..+.+|||||++.+...... ...++..++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~---------~~~l~~~l~~~~~--------------- 129 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYL--------------- 129 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHHH---------HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChHH---------HHHHHHHHHHHHH---------------
Confidence 8765544333222222333332 34779999999998753211 1123333332211
Q ss_pred CCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 273 SKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
.+..+|+++++.+. .+++++.+ ||. ..+.+++ +.+++.+|+...+........ ..+..++..+ .+.+
T Consensus 130 --~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r 202 (324)
T 1l8q_A 130 --LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVR 202 (324)
T ss_dssp --TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHH
T ss_pred --CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHH
Confidence 22367777777765 68999999 986 6789999 999999999988875544333 2366678777 5778
Q ss_pred HHHHHHHHHHHH
Q 045279 347 DLAALANKAGNL 358 (702)
Q Consensus 347 dl~~l~~~a~~~ 358 (702)
++..++..+...
T Consensus 203 ~l~~~l~~~~~~ 214 (324)
T 1l8q_A 203 EIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888776654
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=147.91 Aligned_cols=201 Identities=20% Similarity=0.187 Sum_probs=138.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
+...|+++.|.+..++.+...+.. ....+++|+||||||||++++.+++.+ ...++.++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 345688899998888777665532 123359999999999999999999876 45678887765
Q ss_pred ccccCcCchHHHHHHHHHHHH------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSRAR------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+.... ...+.||||||+|.+. ...++.|+..++.. ..++.+|++|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~--~~~~~~i~~~ 139 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSC 139 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 432 122223332222 2468899999999987 45566677666653 3467888899
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|.+..+++++.+ ||. .+.+++|+.++...++...+...+... +..++.++ ..+ +-+.+.+.++++.++..+
T Consensus 140 ~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~~-~g~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI--YIS-GGDFRKAINALQGAAAIG-- 211 (226)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHH-TTCHHHHHHHHHHHHHTC--
T ss_pred CChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHc-CCCHHHHHHHHHHHHhcC--
Confidence 999999999988 897 899999999999999998887544432 22344455 222 223344444544443221
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+|+.+++.
T Consensus 212 --------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 --------------EVVDADTIYQITA 224 (226)
T ss_dssp --------------SCBCHHHHHHHHH
T ss_pred --------------ceecHHHHHHHhc
Confidence 1799999999986
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=177.47 Aligned_cols=224 Identities=17% Similarity=0.195 Sum_probs=141.4
Q ss_pred cCCccccccCCcccchhhhHHHHHHHh-hChHHHHHcCC---CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRI-KFPEEYEEFGV---DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~-~~~~~~~~~~~---~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
..+..|++++|.+..++.+.+++.... ..+..+...|. .++.++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345678999999999998888765422 11122222232 25678999999999999999999999999999999988
Q ss_pred ccccCcCchHH-------HHHHHHHHH-----HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcE
Q 045279 499 LLNKYVGESEL-------AVRTLFSRA-----RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV 566 (702)
Q Consensus 499 l~~~~~g~~~~-------~~~~~f~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 566 (702)
+...+...... .+..+|..+ ....++||||||+|.+.... ...++.|+..++.. ...+
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC--SSCE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc--CCCE
Confidence 76542211000 012233332 22467899999999998543 12344555555432 2234
Q ss_pred EEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 567 ~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
++|+++.....+.+ +. |+...+.|++|+.+++..++...+.+.++.. +..++.++. ++++|++.+++..
T Consensus 183 Ili~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~------~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQ------TTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH------HTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCcHHHHHHHH
Confidence 44444333334433 43 4456999999999999999988776544332 334566663 2467888887766
Q ss_pred HHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 646 AMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 646 ~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
...+... ..|+.+++..++..
T Consensus 253 ~~~~~~~-------------~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 253 STISTTT-------------KTINHENINEISKA 273 (516)
T ss_dssp THHHHHS-------------SCCCTTHHHHHHHH
T ss_pred HHHHhcC-------------CCCchHHHHHHHHh
Confidence 5443311 14666777666653
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=162.26 Aligned_cols=201 Identities=11% Similarity=0.060 Sum_probs=138.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccccccc----------C------cCchHHHHHH
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPELLNK----------Y------VGESELAVRT 513 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~----------~------~g~~~~~~~~ 513 (702)
...+.+++|+||||||||++++.+++++ ...++.++|..+.+. + .+.+...++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3567889999999999999999999988 457889998765432 1 2345667788
Q ss_pred HHHHH--HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc----cCccccCCCc
Q 045279 514 LFSRA--RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV----MDRAVLRPGR 587 (702)
Q Consensus 514 ~f~~a--~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~----ld~a~~r~gR 587 (702)
+|..+ ....+.||||||+|.+. . .+++..|+.... ....+++||+++|..+. +++++.+ |
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R 187 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--K 187 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--H
T ss_pred HHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--c
Confidence 88875 34567899999999998 1 466777766433 24567899999998865 4555555 8
Q ss_pred cc-eEEEcCCCCHHHHHHHHHHHhccCCCC------------------------------------CCCCHHHHhhhhcC
Q 045279 588 FG-KLLYVPLPTPDERGLILEALARKKPID------------------------------------DSVDLHTIAQSKFC 630 (702)
Q Consensus 588 f~-~~i~~~~p~~~~r~~il~~~~~~~~~~------------------------------------~~~~~~~la~~~~~ 630 (702)
|. .+|.|++|+.++...|++..+....-. .+..++.+|...
T Consensus 188 ~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v-- 265 (318)
T 3te6_A 188 AHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV-- 265 (318)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH--
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH--
Confidence 86 689999999999999999988753210 111234444211
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 631 ENLSGADLA---AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 631 ~~~sg~dl~---~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
....||+| ++|+.|+..|-++...+... ......|+.+++.++..+
T Consensus 266 -A~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 266 -ANVSGSTEKAFKICEAAVEISKKDFVRKGGL--QKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -HHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEECCSEECCTHHHHH
T ss_pred -HhhCChHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEEeeHHHHHHHHHH
Confidence 12456777 57778888888776654321 123445666666665543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=158.48 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=145.0
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV- 198 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~- 198 (702)
.++++|++.+++.+...+......... ..++..++||+||||||||++|+++++.+ +.+++.++|+.+....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKD----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSC----TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 356889999999998887553211100 12344689999999999999999999998 4569999998764321
Q ss_pred -----------ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 199 -----------SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 199 -----------~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.|.... ..+........+++|||||+|.+.. .+...|+..+++.......+
T Consensus 92 ~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~----- 153 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHG----- 153 (311)
T ss_dssp HHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTS-----
T ss_pred HHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCC-----
Confidence 111110 1122223334457999999998853 24456777777543210000
Q ss_pred CCCCCCCCCeEEEEEecCC--------------------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 268 SDASDSKPGYVLVIGATNR--------------------------PDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~--------------------------~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
... .-.++++|+|||. ...++|+|.+ ||+..+.+++|+.+++..|+..+
T Consensus 154 --~~~-~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 154 --RTV-DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp --CEE-ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred --CEE-ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 000 0124779999998 4468889998 99999999999999999999887
Q ss_pred hcCcc---------cCC-cccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 322 TRNLR---------VEG-SFDLVKIARSTP--GFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 322 ~~~~~---------~~~-~~~~~~la~~t~--g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
+.... ... ...+..++...- .++.++|.++++.++..+..+.+..
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 229 MSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp THHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 76531 111 122455665544 5788999999999988776665543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=159.72 Aligned_cols=192 Identities=17% Similarity=0.223 Sum_probs=130.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .++||||||++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 46789999999999999999999988 899999999887665444332222223333333 47899999999987431
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
..+..++..++........+|+++++.+. .+++++.+ ||. ..+.+++ +.+++..|++..+...
T Consensus 115 ---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~ 182 (324)
T 1l8q_A 115 ---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEF 182 (324)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhc
Confidence 23333333333222234456666666665 68899988 886 6899999 9999999999998865
Q ss_pred CCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHH---HHHHHHhhcCCCCCCCCccc-cHHHHHHHHhhc
Q 045279 614 PIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMA---ALEDKLISSKSSSDVTPFTI-KLTHFEQALSKI 680 (702)
Q Consensus 614 ~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~---a~~~~~~~~~~~~~~~~~~i-~~~d~~~al~~~ 680 (702)
++..+ ..++.++. .+ -+.+++.++++.++.. ++. . . ....| +.+++.+++...
T Consensus 183 ~~~l~~~~l~~l~~--~~--g~~r~l~~~l~~~~~~~~~~l~-~-~--------~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 183 NLELRKEVIDYLLE--NT--KNVREIEGKIKLIKLKGFEGLE-R-K--------ERKERDKLMQIVEFVANY 240 (324)
T ss_dssp TCCCCHHHHHHHHH--HC--SSHHHHHHHHHHHHHHCHHHHH-H-H--------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--hC--CCHHHHHHHHHHHHHcCHHHhc-c-c--------cccCCCCHHHHHHHHHHH
Confidence 55332 23556663 33 4668888888877655 111 0 0 01157 888888887653
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=163.48 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=130.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.+|++++|.+.+++.+...+. ....+..+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 34578999999999888877654 123455678889999999999999999999999999987632
Q ss_pred cCchHHHHHHHHHHHHhC-----CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 504 VGESELAVRTLFSRARTC-----SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
...++..+..+... .++||||||+|.+.+ .+.++.|+..++.. ..++.+|++||.+..+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGI 149 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCcccc
Confidence 34455554443322 578999999999872 33456666666643 2467888899999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHh-------ccCCCCC-C-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALA-------RKKPIDD-S-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~-------~~~~~~~-~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
++++.+ ||. ++.|++|+.+++..|++.++ ...++.. + ..++.++. ++++|+|.+++....
T Consensus 150 ~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 150 IKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVK------KNFPDFRKTIGELDS 218 (324)
T ss_dssp CTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHH------HTCSCTTHHHHHHHH
T ss_pred CHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH------hCCCCHHHHHHHHHH
Confidence 999999 995 79999999999776655433 2333322 2 33455552 245566666654443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=150.72 Aligned_cols=159 Identities=26% Similarity=0.359 Sum_probs=113.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...|+++.|.+...+.+...+ ....+.+++|+||||||||++|+.+++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l-------------~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 345778888887666655532 12446789999999999999999999986 7889999
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
++..+. ..+.+.....++.++..+. ...++||||||+|.+...+...........+..+ ++ ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hc----cCCeEEEEe
Confidence 988876 3455666777778887664 3457899999999998654322211112333333 32 345678888
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il 606 (702)
||.+. .+++++.+ ||+ .+.+++|+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88775 68999999 998 6999999999998775
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=171.28 Aligned_cols=228 Identities=21% Similarity=0.238 Sum_probs=159.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...|++++|.+...+.+.+.+ ....+.+++|+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l-------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHH-------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 346788999887766655533 22456789999999999999999999986 6678888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
+.+.+. .+|.|..+..++.+|..+....++||||||+|.+.+.++...+. ..+.+.|...+ ....+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~~~~~L~~~l----~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHHHHSSCS----SSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HHHHHHHHHHH----hCCCeEEEEEe
Confidence 888776 46889999999999999988788999999999998765432221 33344333333 34677889999
Q ss_pred CCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC----CCCC-CCCHHHHh---hhhcCCCCCHHHHH
Q 045279 573 NRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----PIDD-SVDLHTIA---QSKFCENLSGADLA 639 (702)
Q Consensus 573 n~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~-~~~~~~la---~~~~~~~~sg~dl~ 639 (702)
|.++ .+|+++.+ ||+ .+.|+.|+.+++..|++.+.... .+.. +..+..++ ...+...+....+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8643 57899999 998 79999999999999998876542 2211 12233333 22334456667788
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 640 AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 640 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.++.+|+..+.... .......|+.+|+..++....
T Consensus 400 ~lld~a~~~~~~~~-------~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMP-------VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSS-------SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccc-------ccccCCccCHHHHHHHHHHhc
Confidence 88888764332210 011234789999999998764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=164.60 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=133.8
Q ss_pred CCCCCccccc-CHH--HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GME--SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~--~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |.. .++..+...+.. + + . .++++|+||||||||+|++++++.+ +.+++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~----~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKH----P------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHS----T------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhC----C------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4556899988 533 333444433311 1 1 1 5789999999999999999999988 7889999
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++..+...+.+.........|.......+.+|||||++.+..... ....|+..++....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~---------~q~~l~~~l~~l~~------------ 225 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG---------VQTELFHTFNELHD------------ 225 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH---------HHHHHHHHHHHHHT------------
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH---------HHHHHHHHHHHHHH------------
Confidence 998875543332222112233333333678999999999875321 11234444443221
Q ss_pred CCCCCCCeEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~ 343 (702)
.+..+||++.+.+.. +++++++ ||. ..+.+++|+.+++.+|+...+....+... ..+..++..+.|
T Consensus 226 -----~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g- 297 (440)
T 2z4s_A 226 -----SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD- 297 (440)
T ss_dssp -----TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-
T ss_pred -----CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-
Confidence 233566666665554 8899999 885 67899999999999999988765443322 236677777765
Q ss_pred CHHHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGNLA 359 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a 359 (702)
+.+++..+++.+...+
T Consensus 298 n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 298 NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8889988888876554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=144.46 Aligned_cols=183 Identities=20% Similarity=0.205 Sum_probs=128.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|.+.+++.+.+.+.. ....+++|+||||||||++++.+++.+ ...++.++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34799999999999999987732 123459999999999999999999886 356777777653
Q ss_pred hcccccccHHHHHHHHHHHH------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
.. ...+...+.... ...+.+|+|||+|.+... ....|+..++..
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~------------- 129 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY------------- 129 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT-------------
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc-------------
Confidence 21 122223333322 245789999999988642 123455555542
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHH
Q 045279 269 DASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGAD 347 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~d 347 (702)
+.++.+|++||.+..+++++.+ ||. .+.+++|+.++..+++...+........ ..+..++..+.| +.+.
T Consensus 130 ------~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~ 199 (226)
T 2chg_A 130 ------SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRK 199 (226)
T ss_dssp ------TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred ------CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 2347889999999999999999 995 8999999999999999987765443322 235556666655 5555
Q ss_pred HHHHHHHH
Q 045279 348 LAALANKA 355 (702)
Q Consensus 348 l~~l~~~a 355 (702)
+.+++..+
T Consensus 200 l~~~l~~~ 207 (226)
T 2chg_A 200 AINALQGA 207 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-14 Score=147.51 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=146.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
...+++..|.+.++..+...+.... ..+ .++.+++|+||||||||++++++|+.++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4467778888777776655443321 111 34577999999999999999999999998887776654321
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
...+..++.. ...++|+||||++.+.+ .+.+.|+..++... ....+.+
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 2233344332 13568999999999872 33334444443221 0123677
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+++|+++..+++++.+ ||...+.+++|+.+++.+|++...+..+...+ ..+..++. .+.| +.+++.++++.+..
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~--~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAK--RSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH--TSTT-CHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH--hcCC-ChHHHHHHHHHHHH
Confidence 7899999999999998 99888999999999999999998776554322 23455663 3333 45777788887766
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|..+.. ..|+.+++.+|+....
T Consensus 229 ~a~~~~~-----------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKA-----------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTC-----------SSBCHHHHHHHHHHHT
T ss_pred HHHHcCC-----------CCcCHHHHHHHHHHhC
Confidence 5554321 2689999999998775
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=159.85 Aligned_cols=213 Identities=22% Similarity=0.227 Sum_probs=143.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----------CCeEEEEecc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----------GANFIHIKGP 497 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----------~~~~~~i~~~ 497 (702)
+++.|.+...+.+...+..... ...+.+++|+||||||||++|+.+++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6788888888888776654321 2445689999999999999999999987 8999999977
Q ss_pred ccc-cc-----------------CcCch-HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHH-HHHHHHhh
Q 045279 498 ELL-NK-----------------YVGES-ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERL-LNQLLIEL 557 (702)
Q Consensus 498 ~l~-~~-----------------~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~-~~~ll~~l 557 (702)
... +. +.|.+ ...+..++..+... +.||||||+|.+...+. .++ +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-------GDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-------SHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-------CceeHHHHhcCC
Confidence 643 11 11221 23344445444443 34999999999975321 233 44444332
Q ss_pred hCCCCCCcEEEEEecCCC---CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc--CCC-CCCCCHHHHhhhhcCC
Q 045279 558 DGADKRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK--KPI-DDSVDLHTIAQSKFCE 631 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~--~~~-~~~~~~~~la~~~~~~ 631 (702)
.++.||++||.+ +.+++++.+ ||...+.|++|+.++...|++..+.. ... ..+..++.++. .+.
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~--~~~ 232 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA--ISA 232 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH--HHH
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH--HHH
Confidence 678899999987 678999888 88779999999999999999998764 111 12233455553 332
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 632 NL--SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 632 ~~--sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+. +.+.+.++|+.|+..|. ....|+.+|+..|+....
T Consensus 233 ~~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 233 KEHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 22 22445566666665443 113689999999887764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=147.88 Aligned_cols=202 Identities=20% Similarity=0.260 Sum_probs=141.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
...|+++.|.+..++.+...+.. + ..+..++|+||||||||++++.+++.+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 44678899988888877765532 1 234578999999999999999999877431
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+.... ......++.++..+. ...+.+|||||+|.+. ...++.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHH
Confidence 22222111 122334555665443 2357899999999987 6677888888
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
++.. ..++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++...+... +..++.++ ..+.| +.
T Consensus 150 l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~G-~~ 221 (250)
T 1njg_A 150 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA--RAAEG-SL 221 (250)
T ss_dssp HHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HHHTT-CH
T ss_pred HhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCC-CH
Confidence 8753 4578888899999999999988 76 6899999999999999999887654432 22355566 34544 66
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
+.+.++++.|+..+ ...|+.+|+.+++.
T Consensus 222 ~~~~~~~~~~~~~~---------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 222 RDALSLTDQAIASG---------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHTTT---------------TSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc---------------CceecHHHHHHHhC
Confidence 77888877664211 01699999998863
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=157.77 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=124.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|.+++++.+...+.. -..++.+|++||||||||++++++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 34899999999999999987741 23446688889999999999999999999999999987631
Q ss_pred cccHHHHHHHHHHHHhh-----CCceEEechhhHhh-hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRT-----APSIVFIDEIDAIA-SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
...+...+...... .+.||||||+|.+. .. ....|+..++...
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-----------~~~~L~~~le~~~----------------- 134 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-----------SQRHLRSFMEAYS----------------- 134 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-----------HHHHHHHHHHHHG-----------------
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-----------HHHHHHHHHHhCC-----------------
Confidence 33444444443332 46799999999886 22 2334666666532
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-------cccCC-c-ccHHHHHhhCCC
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-------LRVEG-S-FDLVKIARSTPG 342 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-------~~~~~-~-~~~~~la~~t~g 342 (702)
.++.+|++||.+..+++++++ || .++.|+.|+.+++.+|+..+... ..... . ..+..++..+.|
T Consensus 135 --~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 135 --SNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp --GGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred --CCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 347899999999999999999 99 67999999999987776544322 22222 2 335667777665
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=159.90 Aligned_cols=210 Identities=15% Similarity=0.113 Sum_probs=140.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc------ccc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE------LLN 501 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~------l~~ 501 (702)
++++.|.+.++..+...+.. +.+++|+||||||||++|+++|+.++.+++.+++.. +.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 46688888887766554322 258999999999999999999999999999888732 222
Q ss_pred cCcCchHHHHHHHHHHHHh--CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEE
Q 045279 502 KYVGESELAVRTLFSRART--CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIG 570 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~ 570 (702)
........ ..|. ... ...+||||||++.+. ...++.|+..|+.. ....+++||+
T Consensus 91 ~~~~~~~~---~~~~-~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 91 TMIYNQHK---GNFE-VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEEETTT---TEEE-EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred ceeecCCC---CceE-eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11100000 0000 000 013799999999987 67778888777642 1234678888
Q ss_pred ecCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC----------------------C-CCCHH
Q 045279 571 ATNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID----------------------D-SVDLH 622 (702)
Q Consensus 571 atn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~----------------------~-~~~~~ 622 (702)
|+|..+ .+++++++ ||+..+.++.|+.+++.+|++..+...... - +..++
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 233 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEK 233 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHH
Confidence 888543 38999999 999889999999999999999987653211 0 11122
Q ss_pred HHhhhh-----------------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 623 TIAQSK-----------------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 623 ~la~~~-----------------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++... ...+.+.+.+.++++.|...|.-+.. ..|+.+|+.+|+..+
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~-----------~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR-----------DYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC-----------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHH
Confidence 332100 11255788888888877655544322 268999999988765
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=165.62 Aligned_cols=187 Identities=25% Similarity=0.303 Sum_probs=127.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...+++++|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899998887766654321 345689999999999999999999986 7788888
Q ss_pred ecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 495 KGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 495 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+++ ..|.|+.+..++.+|..+....++||||| .. ....+.|+..|+ ...+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~----~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLA----RGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTT----SSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhc----CCCEEEEecCCH
Confidence 887 67888888889999999998889999999 11 345555655554 457899999999
Q ss_pred CC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-----CHHHHh---hhhcCCCCCHHHHHHH
Q 045279 575 PD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-----DLHTIA---QSKFCENLSGADLAAM 641 (702)
Q Consensus 575 ~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la---~~~~~~~~sg~dl~~~ 641 (702)
++ .+|+++.+ ||. .|.|+.|+.+++..|++.++......... .+..++ ...+...+.......+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 68999999 997 59999999999999999887763222122 233333 2222334445677788
Q ss_pred HHHHHHHH
Q 045279 642 MNEAAMAA 649 (702)
Q Consensus 642 ~~~a~~~a 649 (702)
+.+|+..+
T Consensus 378 l~~a~~~~ 385 (468)
T 3pxg_A 378 IDEAGSKV 385 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=146.87 Aligned_cols=150 Identities=23% Similarity=0.399 Sum_probs=109.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+|++++|.+..++.+.+.+. .....+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 79999999999999887662 2345789999999999999999999987 678888888
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
..+... +.+.....+..++..+... .|.+|||||+|.+...+..... ...+.+.|...++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~~-------------- 150 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLAR-------------- 150 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHHT--------------
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHhc--------------
Confidence 877643 4455566677777776655 5779999999999744321000 01122233333332
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPD 310 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~ 310 (702)
+.+++|++||.+. .+++++++ ||. .+.++.|+
T Consensus 151 -------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 -------GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp -------TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred -------CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 2378999998764 68999999 996 58999885
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=170.41 Aligned_cols=213 Identities=19% Similarity=0.249 Sum_probs=145.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSG 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g 200 (702)
++++|++.+++.+...+........ ...++..++||+||||||||++|+++|+.+ +.+++.++|+.+...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5789999999999888754321110 011233479999999999999999999997 688999999999877655
Q ss_pred ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 201 ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 201 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
. ...++.......++|||||||+.+.+ .+...|+..|++... ...++. .....++++
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~-~~~~g~-------~~~~~~~~i 623 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRL-TDSKGR-------TVDFRNTIL 623 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBC-C------------CCBCTTCEE
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeE-EcCCCC-------EeccCCeEE
Confidence 4 12233344455678999999987753 355678888886322 111111 112345899
Q ss_pred EEecCCCCC------------CCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCc---------ccCCc-ccHHHHHh
Q 045279 281 IGATNRPDA------------VDPALRRPGRFDREIVLGVPDENARVQILSVLTRNL---------RVEGS-FDLVKIAR 338 (702)
Q Consensus 281 I~atn~~~~------------ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~---------~~~~~-~~~~~la~ 338 (702)
|+|||.+.. +.|.|++ ||+.+|.|++|+.+++..|+..++... .+... ..+..++.
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 999997543 7899998 999999999999999999998776543 11111 12445554
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 339 --STPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 339 --~t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
....+..++|++++.+++.....+.+-
T Consensus 702 ~~~~~~~~~R~L~~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 702 EGVDLEYGARPLRRAIQKHVEDRLSEELL 730 (758)
T ss_dssp GGCCTTTTTTTHHHHHHHHTHHHHHHHHH
T ss_pred hCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999887777655543
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=159.65 Aligned_cols=237 Identities=23% Similarity=0.229 Sum_probs=136.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcc-----------------cccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLP-----------------QWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~-----------------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+.|+|++.+|+.|...+...+...... ..-...+..++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 358999999999987774322221100 000123567899999999999999999999999999
Q ss_pred EEEechhhh-ccccccc-HHHHHHHHHHH----HhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhcc
Q 045279 187 YKISATEVV-SGVSGAS-EENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 187 ~~i~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~ 257 (702)
+.+++..+. .++.|.. ...+..++..+ ....++||||||+|.+...+.... +.....+...|+..|++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999999875 3455543 33445555432 133577999999999986633211 11112367788888885432
Q ss_pred ccCC-CCCC-CCCCCCCCCCCeEEEEEecCC-----------------------------------------CCCCCccc
Q 045279 258 LVQP-GDQK-SKSDASDSKPGYVLVIGATNR-----------------------------------------PDAVDPAL 294 (702)
Q Consensus 258 ~~~~-~~~~-~~~~~~~~~~~~v~vI~atn~-----------------------------------------~~~ld~al 294 (702)
.+.. ++.. .......-...++++|+++|. ...+.|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1111 1110 000000011244678887762 11256777
Q ss_pred cCCCCcceEEEeCCCCHHHHHHHHHH----hhcC---------cccCCc-ccHHHHHhhC--CCCCHHHHHHHHHHHHHH
Q 045279 295 RRPGRFDREIVLGVPDENARVQILSV----LTRN---------LRVEGS-FDLVKIARST--PGFVGADLAALANKAGNL 358 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~~er~~Il~~----~~~~---------~~~~~~-~~~~~la~~t--~g~~~~dl~~l~~~a~~~ 358 (702)
.+ ||+.++.|++++.++...|+.. ++.. ..+... ..+..++... .....+.+.+++..++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9988999999999999999963 2211 111111 1234444442 235678888888887766
Q ss_pred HHHH
Q 045279 359 AMKR 362 (702)
Q Consensus 359 a~~r 362 (702)
++.+
T Consensus 339 ~~~~ 342 (376)
T 1um8_A 339 IMFD 342 (376)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 5543
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=178.02 Aligned_cols=203 Identities=27% Similarity=0.326 Sum_probs=131.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...+++++|.+.....+.+.+. ...+.+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3467888898876665555331 1345679999999999999999999987 8899999
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+++.+. ..|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+. ..+.+.|...++ ...+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CCCeEEEEe
Confidence 999887 568899999999999998864 6899999999999866543322 233444444443 345678899
Q ss_pred cCCCC----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC----CC-CCCCHHHH---hhhhcCCCCCHHHHH
Q 045279 572 TNRPD----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP----ID-DSVDLHTI---AQSKFCENLSGADLA 639 (702)
Q Consensus 572 tn~~~----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~l---a~~~~~~~~sg~dl~ 639 (702)
||.++ .+|+++.+ ||+. +.|+.|+.+++..|++.++.... +. .+..+..+ +...++..|-.....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 98765 47999999 9985 99999999999999988766432 11 11122332 333345677777888
Q ss_pred HHHHHHHHHHH
Q 045279 640 AMMNEAAMAAL 650 (702)
Q Consensus 640 ~~~~~a~~~a~ 650 (702)
.++.+|+..+.
T Consensus 383 ~lldea~a~~~ 393 (854)
T 1qvr_A 383 DLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887775443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-15 Score=147.61 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=122.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+.+++|+||||||||++|++++..+ +.+++.++++++...+.. .+.. ...+.+|||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCC-
Confidence 56789999999999999999999877 478888998887654321 1111 135789999999998742
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcE-EEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGV-FVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
......|+..++.......+ +|+.+++.+. .+++++.+ ||. ..+.+++|+.+++..++..++..
T Consensus 120 --------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 120 --------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp --------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 11233343333332222333 4444444443 45677877 886 89999999999999999999886
Q ss_pred CCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 613 KPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 613 ~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.+...+ ..++.++ ..+ +-+.+++.++++.++..|..+. ..|+.+++.++++
T Consensus 190 ~~~~~~~~~~~~l~--~~~-~g~~r~l~~~l~~~~~~a~~~~------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 190 RGLQLPEDVGRFLL--NRM-ARDLRTLFDVLDRLDKASMVHQ------------RKLTIPFVKEMLR 241 (242)
T ss_dssp TTCCCCHHHHHHHH--HHT-TTCHHHHHHHHHHHHHHHHHHT------------CCCCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHH--HHc-cCCHHHHHHHHHHHHHHHHHhC------------CCCcHHHHHHHhh
Confidence 554322 2345555 233 3367888888888887664432 1699999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=142.38 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=125.6
Q ss_pred CCCCcccccCH---HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 119 EGPRFQDLGGM---ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 119 ~~~~~~~i~G~---~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
+..+|++++|. +.+++.+...+. ...+.+++|+||||||||++++++++.+. .+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS-------------GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH-------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34589999973 456666665442 12457899999999999999999998874 778899988
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++........ .. ...+.+|||||++.+..... ....|+..++....
T Consensus 90 ~~~~~~~~~~--------~~--~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~--------------- 135 (242)
T 3bos_A 90 IHASISTALL--------EG--LEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAE--------------- 135 (242)
T ss_dssp GGGGSCGGGG--------TT--GGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH--------Hh--ccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHH---------------
Confidence 8765432211 11 13467999999998865321 11223333332211
Q ss_pred CCCCeE-EEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCH
Q 045279 273 SKPGYV-LVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVG 345 (702)
Q Consensus 273 ~~~~~v-~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~ 345 (702)
.+.+ +|++++..+. .+++++.+ ||. ..+.++.|+.+++.+++..++........ ..+..++..+.| +.
T Consensus 136 --~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~ 210 (242)
T 3bos_A 136 --QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DL 210 (242)
T ss_dssp --HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CH
T ss_pred --cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CH
Confidence 1224 4444444443 45688888 885 78999999999999999988875544332 235667777765 78
Q ss_pred HHHHHHHHHHHHHH
Q 045279 346 ADLAALANKAGNLA 359 (702)
Q Consensus 346 ~dl~~l~~~a~~~a 359 (702)
+.+.++++.+...+
T Consensus 211 r~l~~~l~~~~~~a 224 (242)
T 3bos_A 211 RTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888776654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=151.78 Aligned_cols=226 Identities=18% Similarity=0.126 Sum_probs=152.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCc--ceEEEcCCCCChhHHHHHHHHHh----CCeEEEEeccccccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLET--GFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNK 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~ 502 (702)
+++.|.+...+.+...+..... + ..+. +++|+||||||||+++++++..+ +..++.+++....+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 6788888888877776654321 1 2233 79999999999999999999988 678899987654321
Q ss_pred ----------------CcCchHHH-HHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC--
Q 045279 503 ----------------YVGESELA-VRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK-- 562 (702)
Q Consensus 503 ----------------~~g~~~~~-~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-- 562 (702)
..+..... ...+...... ..|.||||||++.+. ...+..|+..++....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCCC
Confidence 01212222 2222222222 358899999999984 6778888877764322
Q ss_pred CCcEEEEEecCCC---CccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhcc---CCCCCCCCHHHHhhhhcCCC---
Q 045279 563 RKGVFVIGATNRP---DVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARK---KPIDDSVDLHTIAQSKFCEN--- 632 (702)
Q Consensus 563 ~~~~~vI~atn~~---~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~~~~~--- 632 (702)
..++.||++||.+ +.+++.+.+ ||.. .+.|++++.++...++...+.. ...-.+..++.++. .+.+
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 232 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIAD--ITGAQTP 232 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHH--HHSBSST
T ss_pred cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHhhccc
Confidence 2478888899887 567888777 8875 8999999999999999988764 11122233455553 3321
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 633 -----LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 633 -----~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
-..+.+.++|+.|+..|..+.. ..|+.+|+..|+.........+.+
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~~-----------~~i~~~~v~~~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNGR-----------KHIAPEDVRKSSKEVLFGISEEVL 283 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTTC-----------SSCCHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCC-----------CCcCHHHHHHHHHHHhhhhHHHHH
Confidence 1346677888888766654321 268889999998887665544433
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=155.05 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=134.3
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~ 191 (702)
...++++|.+..++.+...+...+. ...+.+++|+||||||||++++.+++.+ +.+++.++|
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3568999999999999987643221 2346789999999999999999999988 788899998
Q ss_pred hhhhcc----------------cccccHHH-HHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 192 TEVVSG----------------VSGASEEN-IRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 192 ~~l~~~----------------~~g~~~~~-~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...... ..|..... ...++..... +.|.+|||||+|.+..... ....+..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~------~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG------GQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT------HHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC------CChHHHhHhhchh
Confidence 753221 11222223 3333433322 2477999999999875420 1123333443332
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcC--ccc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRN--LRV 327 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~--~~~ 327 (702)
... .+.++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|+...+.. ...
T Consensus 161 ~~~-----------------~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~ 221 (387)
T 2v1u_A 161 ELG-----------------DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPG 221 (387)
T ss_dssp CC----------------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT
T ss_pred hcC-----------------CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC
Confidence 110 02348899999887 688999999 8864 7999999999999999987653 111
Q ss_pred C-CcccHHHHHhhCC---CCCHHHHHHHHHHHHHHH
Q 045279 328 E-GSFDLVKIARSTP---GFVGADLAALANKAGNLA 359 (702)
Q Consensus 328 ~-~~~~~~~la~~t~---g~~~~dl~~l~~~a~~~a 359 (702)
. ....+..+++.+. | .++.+.++++.|...+
T Consensus 222 ~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIA 256 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 1 1223455555554 4 6677777777775544
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=152.84 Aligned_cols=171 Identities=23% Similarity=0.350 Sum_probs=104.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE----EEechh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY----KISATE 193 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~----~i~~~~ 193 (702)
.+..+|++|+|.+.+++.+...+.. ....++||+||||||||++|+++++.++.... .++|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3456899999999988765433311 12346999999999999999999998863110 012211
Q ss_pred hhcc---------------------cccccHHHH------HHHHHHH---------HhhCCceEEechhhHhhhcchhhh
Q 045279 194 VVSG---------------------VSGASEENI------RDLFSKA---------YRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 194 l~~~---------------------~~g~~~~~~------~~~f~~a---------~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
.... ..+.+...+ ...+... ....+++|||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 1100 011111111 1111111 0113569999999988643
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCC-CHHHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVP-DENARV 315 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p-~~~er~ 315 (702)
....|+..++.....+...+. ....+.++++|+|||+.+ .+++++++ ||+..+.++.| +.+++.
T Consensus 160 ------~~~~Ll~~le~~~~~~~~~g~------~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~ 225 (350)
T 1g8p_A 160 ------IVDLLLDVAQSGENVVERDGL------SIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRV 225 (350)
T ss_dssp ------HHHHHHHHHHHSEEEECCTTC------CEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHH
T ss_pred ------HHHHHHHHHhcCceEEEecce------EEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 234567777653221211111 011123599999999854 89999999 99888999999 567777
Q ss_pred HHHHH
Q 045279 316 QILSV 320 (702)
Q Consensus 316 ~Il~~ 320 (702)
+|+..
T Consensus 226 ~il~~ 230 (350)
T 1g8p_A 226 EVIRR 230 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=154.02 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=115.6
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEechhhh
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISATEVV 195 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~~l~ 195 (702)
|.|.++.++.+...+...+. -..+.+++|+||||||||++++.+++.+ ...++.+||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 78889999988877754332 3467889999999999999999999998 3467889987653
Q ss_pred cc----------c------ccccHHHHHHHHHHH--HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 196 SG----------V------SGASEENIRDLFSKA--YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 196 ~~----------~------~g~~~~~~~~~f~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
+. . .+.....+..+|... ....+.|+||||+|.+. .+ .++..|+.+...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~--- 159 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS--- 159 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc---
Confidence 32 1 233455667777764 24467899999999998 11 233334432221
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCC----CCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDA----VDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~----ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
..+++.||+++|..+. +++++++ ||. .+|.|++|+.++..+|++..+...
T Consensus 160 ----------------~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 ----------------KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp ----------------SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 1345899999998763 5677777 886 679999999999999998877553
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=141.03 Aligned_cols=184 Identities=24% Similarity=0.325 Sum_probs=129.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------------- 186 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------------- 186 (702)
+..|++++|.+.+++.+.+.+.. + ..+..++|+||||||||++++.+++.+....
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 33799999999999999887732 1 2235799999999999999999999875321
Q ss_pred -----------EEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 187 -----------YKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 187 -----------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
+.++... ......+..++..+. ...+.+|+|||+|.+... ....|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-----------~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----------HHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----------HHHHHHHH
Confidence 1111110 112233445554432 234679999999987422 23456666
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-c
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-S 330 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-~ 330 (702)
++.. +.++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..+++...+....... .
T Consensus 150 l~~~-------------------~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~ 207 (250)
T 1njg_A 150 LEEP-------------------PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 207 (250)
T ss_dssp HHSC-------------------CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCH
T ss_pred HhcC-------------------CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 6532 2348899999998899999998 87 7899999999999999998876544332 2
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+..+++.+.| +++.+..+++.+
T Consensus 208 ~~~~~l~~~~~G-~~~~~~~~~~~~ 231 (250)
T 1njg_A 208 RALQLLARAAEG-SLRDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 336677888866 788888887766
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=155.42 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=129.6
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGP 497 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~ 497 (702)
..+..|++++|.+.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 3456788999999888877664421 122359999999999999999999986 3467888887
Q ss_pred cccccCcCchHHHHHHHHHHH-H-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRA-R-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a-~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+..+. ......+..+.... . ...+.||||||+|.+. ...++.|+..++.. ..++.+|++||.+
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~ 142 (319)
T 2chq_A 78 DERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSCNYV 142 (319)
T ss_dssp STTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSSS--SSSEEEEEEESCG
T ss_pred cccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 65331 11111122221110 1 2457899999999997 56677788777653 3567888899999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
..+.+++.+ |+. .+.|++|+.+++..++...+.+.+...+ ..++.++ ..++++++.+++..
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~------~~~~G~~r~~~~~l 204 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI------YISGGDFRKAINAL 204 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH------HTTTTCHHHHHHHH
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHH
Confidence 999999988 886 8999999999999999998887655422 2234444 23455666555443
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-15 Score=164.47 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=126.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhcc-CCCcccccCC---CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLY-HPQLPQWLGV---RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~-~~~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
+.+|++|+|.+.+++.+.+.+..... .+..+...|. .+..++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 33899999999999999988864221 1122222232 3568999999999999999999999999999999998764
Q ss_pred cccccccH-------HHHHHHHHHH-----HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 196 SGVSGASE-------ENIRDLFSKA-----YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 196 ~~~~g~~~-------~~~~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
........ ..+..+|..+ ....+.||||||+|.+....+. .+..|+..++..
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~--------~l~~L~~~l~~~-------- 178 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG--------GVGQLAQFCRKT-------- 178 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT--------HHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH--------HHHHHHHHHHhc--------
Confidence 43211000 0012233332 1245789999999999764322 133455555532
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-SFDLVKIARSTPG 342 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g 342 (702)
...+++|+++.....+. .+++ |+ ..+.|+.|+.+++.+++...+....... ...+..+++.+.|
T Consensus 179 -----------~~~iIli~~~~~~~~l~-~l~~--r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 179 -----------STPLILICNERNLPKMR-PFDR--VC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp -----------SSCEEEEESCTTSSTTG-GGTT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred -----------CCCEEEEEcCCCCccch-hhHh--ce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 11255554443333444 4555 55 7899999999999999988775544322 2346778877765
Q ss_pred CCHHHHHHH
Q 045279 343 FVGADLAAL 351 (702)
Q Consensus 343 ~~~~dl~~l 351 (702)
+.+.+.++
T Consensus 244 -diR~~i~~ 251 (516)
T 1sxj_A 244 -DIRQVINL 251 (516)
T ss_dssp -CHHHHHHH
T ss_pred -cHHHHHHH
Confidence 33333333
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=151.81 Aligned_cols=167 Identities=15% Similarity=0.159 Sum_probs=122.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
.+..|+++.|.+..++.+...+.. + .. .+++|+||||+|||++|+++++.+ +.+++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 345678899999988877765421 1 22 349999999999999999999986 34678888765
Q ss_pred ccccCcCchHHHHHHHHHHHH-------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 499 LLNKYVGESELAVRTLFSRAR-------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~-------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
.. +...++.++.... ...+.||||||+|.+. ...++.|+..++.. ..++.+|++
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 143 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY--SNSTRFAFA 143 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT--TTTEEEEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhcc--CCCceEEEE
Confidence 32 2344555655544 3347899999999997 55677777777753 346778888
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
||.+..+.+++.+ |+. .+.|++|+.++...++...+...+... +..++.++
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 195 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAII 195 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999988 885 899999999999999998887644332 22345555
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=148.70 Aligned_cols=209 Identities=14% Similarity=0.092 Sum_probs=138.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC------CeEEEEecc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG------ANFIHIKGP 497 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~ 497 (702)
.+..|++++|.+.+++.+...+.. ....+++|+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 456789999999988877654321 1224599999999999999999999863 468888877
Q ss_pred cccccCcCchHHHHHHHHHHHH----------------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRAR----------------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD 561 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~----------------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 561 (702)
+..+ ...++..+.... ...+.||||||+|.+. ...++.|+..|+...
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETYS 161 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhcC
Confidence 6421 112222221111 1245799999999998 556777888777543
Q ss_pred CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHH
Q 045279 562 KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAA 640 (702)
Q Consensus 562 ~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~ 640 (702)
.++.+|++||.+..+++++.+ |+. .+.|++|+.++...++...+...++.- +..++.++ ..+.| +.+.+.+
T Consensus 162 --~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~--~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 162 --GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL--DISAG-DLRRGIT 233 (353)
T ss_dssp --TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH--HHTSS-CHHHHHH
T ss_pred --CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHcCC-CHHHHHH
Confidence 345667788999999999988 886 889999999999999999887655432 23345555 22322 2333444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+++.++..+-+.. ....|+.+|+.+++...
T Consensus 234 ~l~~~~~~~~~~~----------~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 234 LLQSASKGAQYLG----------DGKNITSTQVEELAGVV 263 (353)
T ss_dssp HHHHTHHHHHHHC----------SCCCCCHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCc----------cCccccHHHHHHHhCCC
Confidence 4444433221110 01158888888887744
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=149.95 Aligned_cols=162 Identities=19% Similarity=0.312 Sum_probs=112.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech------hhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT------EVV 195 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~------~l~ 195 (702)
.+++++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 478899999999888766532 35899999999999999999999999999998874 222
Q ss_pred cccccccHHHHHHHHHHHHhhC---CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTA---PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
........ ...|. ...+ .+||||||+|.+... ....|+..+++....+. + ...
T Consensus 90 g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~-g-------~~~ 145 (331)
T 2r44_A 90 GTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIG-D-------TTY 145 (331)
T ss_dssp EEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEET-T-------EEE
T ss_pred CceeecCC---CCceE--eccCcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeC-C-------EEE
Confidence 21110000 00000 0011 269999999987533 33456677775432221 1 011
Q ss_pred CCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 273 SKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
..+.+++||+|+|+.+ .+++++++ ||...+.++.|+.+++.+|++..+..
T Consensus 146 ~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 146 PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1234588999999654 38999999 99888999999999999999887654
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=150.98 Aligned_cols=186 Identities=19% Similarity=0.212 Sum_probs=126.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 34899999999999998866521 122349999999999999999999986 345778888764
Q ss_pred hcccccccHHHHHHHHHHH-H-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKA-Y-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a-~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
.. .......+....... . ...+.+++|||+|.+.... .+.|+..++.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-----------~~~L~~~le~------------------ 128 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA-----------QAALRRTMEM------------------ 128 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH-----------HHTTGGGTSS------------------
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH-----------HHHHHHHHHh------------------
Confidence 22 111112222211010 0 1346799999999886421 2234444432
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l 351 (702)
.+.++++|++||.+..+.+++++ |+ ..+.|++|+.+++.+++...+.......+. .+..++..+.| +.+.+.++
T Consensus 129 -~~~~~~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~ 203 (319)
T 2chq_A 129 -YSKSCRFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINA 203 (319)
T ss_dssp -SSSSEEEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHH
T ss_pred -cCCCCeEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 23458899999999999999999 98 589999999999999999888766544332 35567766655 55555554
Q ss_pred HHH
Q 045279 352 ANK 354 (702)
Q Consensus 352 ~~~ 354 (702)
++.
T Consensus 204 l~~ 206 (319)
T 2chq_A 204 LQG 206 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-14 Score=150.34 Aligned_cols=222 Identities=18% Similarity=0.177 Sum_probs=143.3
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecccccc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPELLN 501 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~ 501 (702)
.+++.|.+...+.+...+...+ ....+.+++|+||||||||++++.+++.+ +.+++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~---------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY---------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG---------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHH---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3667888877776655442211 11446689999999999999999999988 88999998764321
Q ss_pred c----------------CcCchHH-HHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 502 K----------------YVGESEL-AVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 502 ~----------------~~g~~~~-~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
. ..+.+.. ....++....... |.||||||++.+....+ ..++..++..++.. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-NK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-CC
Confidence 1 1222222 2444454444433 89999999999985432 24566666666544 34
Q ss_pred CcEEEEEecCCC---CccCccccCCCccc-eEEEcCCCCHHHHHHHHHHHhccCC--CC-CCCCHHHHhhhhcCC--CCC
Q 045279 564 KGVFVIGATNRP---DVMDRAVLRPGRFG-KLLYVPLPTPDERGLILEALARKKP--ID-DSVDLHTIAQSKFCE--NLS 634 (702)
Q Consensus 564 ~~~~vI~atn~~---~~ld~a~~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~~--~~-~~~~~~~la~~~~~~--~~s 634 (702)
.++.+|++||.+ ..+++.+.+ ||. ..+.+++++.++...|+...+.... .. .+..++.++. ++. .-+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~G~ 237 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAA--LAAREHGD 237 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHH--HHHHTTCC
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHhcCC
Confidence 578888899876 467778877 775 4899999999999999998776321 11 1222344442 222 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+.+.++|+.|+..|..+. ...|+.+|+..|+....
T Consensus 238 ~r~~~~ll~~a~~~a~~~~-----------~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERMK-----------DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-----------CCccCHHHHHHHHHHHh
Confidence 4566677777766554331 12688888888876653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=151.18 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=127.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG------VPFYKISATE 193 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~------~~~~~i~~~~ 193 (702)
+.+|++++|.+++++.+...+.. ....++||+||||||||++++++++.++ ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34899999999999999876621 1224499999999999999999998864 4677788765
Q ss_pred hhcccccccHHHHHHHHHHHH----------------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 194 VVSGVSGASEENIRDLFSKAY----------------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~----------------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
... ...+...+.... ...+.||||||+|.+.... ...|+..+++..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~-----------~~~Ll~~le~~~- 161 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-----------QSALRRTMETYS- 161 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTT-
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH-----------HHHHHHHHHhcC-
Confidence 311 111122111111 1234599999999886432 234666676532
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~l 336 (702)
.++.+|.+||.+..+++++++ |+ ..+.|++|+.++...++...+........ ..+..+
T Consensus 162 ------------------~~~~~il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l 220 (353)
T 1sxj_D 162 ------------------GVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERI 220 (353)
T ss_dssp ------------------TTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ------------------CCceEEEEeCchhhCcchhhc--cC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 236777888999999999999 98 47999999999999999988765544322 346667
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+.| +.+.+.++++.+.
T Consensus 221 ~~~~~G-~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 221 LDISAG-DLRRGITLLQSAS 239 (353)
T ss_dssp HHHTSS-CHHHHHHHHHHTH
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 777776 4555555555443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=139.77 Aligned_cols=150 Identities=26% Similarity=0.379 Sum_probs=108.0
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..|+++.|.+...+.+.+.+ ....+.+++|+||||||||++|+.++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l-------------~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQIL-------------SRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHH-------------hCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 35777888887666554433 11346789999999999999999999987 78888888
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccC-CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+..+. ..+.+.....++.++..+... .+.||||||+|.+.+.+. .... ..+.+.|...++ ..++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHH----TTCSCEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc---hHHHHHHHHHHh----cCCeeEEEe
Confidence 87765 335566666777888777654 678999999999986554 1111 223333333343 345778889
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCC
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
||.+. .+++++.+ ||+ .+.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 98765 68999999 998 58999885
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=171.58 Aligned_cols=366 Identities=16% Similarity=0.187 Sum_probs=198.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
..++++.||+|||||++++++|+.+|.+++.++|++-. ....+..+|..+... +.++++||++.+.......
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~evLs~- 716 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQI-GAWGCFDEFNRLDEKVLSA- 716 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhc-CCEeeehhhhhcChHHHHH-
Confidence 45799999999999999999999999999999998743 345567777777554 3699999998776432111
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDENA 313 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~e 313 (702)
....+..+...+.+....+...+ .....+..+.|++|+|+ ...+++++++ || +.+.+..|+.+.
T Consensus 717 ---l~~~l~~i~~al~~~~~~i~~~g------~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 717 ---VSANIQQIQNGLQVGKSHITLLE------EETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp ---HHHHHHHHHHHHHHTCSEEECSS------SEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred ---HHHHHHHHHHHHHcCCcEEeeCC------cEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 11122223333332221111111 11112334788899995 4479999999 99 789999999998
Q ss_pred HHHHHHHhhcCcc---cC-CcccHHHHH-hh-----CCCCCHHHHHHHHHHHHHHHHHH-----HHHhhhhccccCcccc
Q 045279 314 RVQILSVLTRNLR---VE-GSFDLVKIA-RS-----TPGFVGADLAALANKAGNLAMKR-----IIDQRKSELSGNSIAE 378 (702)
Q Consensus 314 r~~Il~~~~~~~~---~~-~~~~~~~la-~~-----t~g~~~~dl~~l~~~a~~~a~~r-----~~~~~~~~~~~~~~~~ 378 (702)
..+|+-....-.. +. ....+-.++ .. .-.|..+.++.++..|....... ++-+...
T Consensus 785 i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~al~--------- 855 (2695)
T 4akg_A 785 IAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESLK--------- 855 (2695)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHHHH---------
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHHHH---------
Confidence 8887632211100 00 001111111 11 23467888888887665432111 0000000
Q ss_pred ccCcccccCCCChhhhhhhcccHhH---HHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHH--------
Q 045279 379 QHSDDWWRQPWLPEEMERLTITMTD---FEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVR-------- 447 (702)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~~~d---~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~-------- 447 (702)
+ ..-..+..+| |...+..+.|... .| .+...+...+.+.+..
T Consensus 856 ----~----------~~lpk~~~~D~~lf~~li~dlFp~~~------~~-------~~~~~l~~~i~~~~~~~~l~~~~~ 908 (2695)
T 4akg_A 856 ----R----------VILPSLGDTDELVFKDELSKIFDSAG------TP-------LNSKAIVQCLKDAGQRSGFSMSEE 908 (2695)
T ss_dssp ----H----------HTGGGCCHHHHHHHHHHHHHHCCCCS------CC-------SSSSHHHHHHHHHHHHHTCCCCHH
T ss_pred ----H----------hccccCchhhHHHHHHHHHHhCCCCC------CC-------CChHHHHHHHHHHHHHcCCcccHH
Confidence 0 0000111222 3333333333221 11 2333444444433321
Q ss_pred -HhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----CC--eEEEEecc-----cccccCcCc----hHHHH
Q 045279 448 -RIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----GA--NFIHIKGP-----ELLNKYVGE----SELAV 511 (702)
Q Consensus 448 -~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~--~~~~i~~~-----~l~~~~~g~----~~~~~ 511 (702)
..+..+++.-. ....|++|+||||||||++.+++|..+ +. .+..+++. ++++.+-.. ....+
T Consensus 909 ~~~K~~ql~e~~--~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGil 986 (2695)
T 4akg_A 909 FLKKCMQFYYMQ--KTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986 (2695)
T ss_dssp HHHHHHHHHHHH--HHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSH
T ss_pred HHHHHHHHHHHH--HhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChH
Confidence 11112222222 234789999999999999999999864 22 23445543 333322111 11123
Q ss_pred HHHHHHHHhC-------CCeEEEEeC-cchhhcccCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEec
Q 045279 512 RTLFSRARTC-------SPCILFFDE-VDALTTKRGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGAT 572 (702)
Q Consensus 512 ~~~f~~a~~~-------~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~at 572 (702)
-.++.++... ....|+||- +|..- -+-+|.+| |+. .-..++-+|+-+
T Consensus 987 s~~~R~~~~~~~~~~~~~~~WivfDG~vD~~W-----------IE~LNsVL---DDNk~L~L~ngErI~l~~~~~llFEv 1052 (2695)
T 4akg_A 987 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEY-----------VEAMNSVL---DDNKILTLPNGERLPIPPNFRILFET 1052 (2695)
T ss_dssp HHHHHHHHTCCCSSCSSEEEEEEECSCCCHHH-----------HHTTHHHH---STTCEEECSSSCEEECCSSCEEEEEE
T ss_pred HHHHHHHHhccccccCCCCeEEEECCCCCHHH-----------HHHHHHHh---cCCCccccCCCCEEecCCCcEEEEEe
Confidence 3344443221 135899993 44333 34455554 331 123456677778
Q ss_pred CCCCccCccccCCCccceEEEcCCCC
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
.......||..+ |+. .|++.+-+
T Consensus 1053 ~dL~~ASPATVS--RcG-mvy~~~~~ 1075 (2695)
T 4akg_A 1053 DNLDHTTPATIT--RCG-LLWFSTDV 1075 (2695)
T ss_dssp SCCTTSCHHHHH--HSE-EEECCSCS
T ss_pred cccccCCcccee--eee-EEEecCCc
Confidence 888888999988 886 66666543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=146.12 Aligned_cols=186 Identities=23% Similarity=0.275 Sum_probs=126.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+...+.. + ...++||+||||||||++|+++++.+. ..++.+++++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34899999999999999977732 1 223599999999999999999999863 24677777653
Q ss_pred hcccccccHHHHHHHHHHH-H-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKA-Y-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a-~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
... ......+....... . ...+.+++|||+|.+... ....|+..++..
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~----------------- 137 (327)
T 1iqp_A 88 RGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMF----------------- 137 (327)
T ss_dssp HHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT-----------------
T ss_pred Cch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhc-----------------
Confidence 211 01111111111000 0 134679999999988642 234466666652
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l 351 (702)
+.++.+|++||.+..+.+++.+ |+ ..+.|++|+.++..+++...+........ ..+..++..+.| +.+.+.++
T Consensus 138 --~~~~~~i~~~~~~~~l~~~l~s--r~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~ 211 (327)
T 1iqp_A 138 --SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINI 211 (327)
T ss_dssp --TTTEEEEEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHH
T ss_pred --CCCCeEEEEeCCccccCHHHHh--hC-cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 2347888899999999999999 98 47999999999999999988766544322 235556666655 55555555
Q ss_pred HHH
Q 045279 352 ANK 354 (702)
Q Consensus 352 ~~~ 354 (702)
++.
T Consensus 212 l~~ 214 (327)
T 1iqp_A 212 LQA 214 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=147.09 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=128.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+.+.+.. + .. .+++|+||||||||++|+++++.+ +..++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 34799999999999999887632 1 22 339999999999999999999986 345677776652
Q ss_pred hcccccccHHHHHHHHHHHH-------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY-------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
. ....++.++.... .+.+.+++|||+|.+.... .+.|+..++..
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~------------ 134 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA-----------QQALRRTMELY------------ 134 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH-----------HHTTHHHHHHT------------
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHH-----------HHHHHHHHhcc------------
Confidence 1 1234455555544 2347799999999886421 33466666642
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 268 SDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
+.++.+|++||.+..+.+.+++ |+ ..+.|++|+.++..+++...+........ ..+..++..+.| +.+
T Consensus 135 -------~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r 203 (323)
T 1sxj_B 135 -------SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMR 203 (323)
T ss_dssp -------TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHH
T ss_pred -------CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 2347888899999999999999 88 58999999999999999987765443322 235566666655 444
Q ss_pred HHHHHHHH
Q 045279 347 DLAALANK 354 (702)
Q Consensus 347 dl~~l~~~ 354 (702)
.+.++++.
T Consensus 204 ~a~~~l~~ 211 (323)
T 1sxj_B 204 QAINNLQS 211 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=148.19 Aligned_cols=185 Identities=22% Similarity=0.281 Sum_probs=131.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|.+.+++.+...+.. + ..+..++|+||+|||||++|+++++.++.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 34678899999988888776532 1 23456899999999999999999998754
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.++.+.. .....++.++..+.. ..+.||||||+|.+. ...++.|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHH
Confidence 1233333210 111235566666542 346899999999997 6678888888
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
++.. ..++++|++|+.+..+.+++.+ |+ ..+.|++|+.++...++...+++.+...+ ..++.++ ..+.| +.
T Consensus 143 le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~--~~~~G-~~ 214 (373)
T 1jr3_A 143 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA--RAAEG-SL 214 (373)
T ss_dssp HHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHSSS-CH
T ss_pred HhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHCCC-CH
Confidence 8753 4577888889988899999988 87 68999999999999999998876554322 2245555 33433 55
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++.++++.+.
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=149.62 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=120.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|++++|.+.+++.+...+.. + ...+++|+||||||||++|+++++.+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 455788999999988888765532 1 223599999999999999999999863 3477777765
Q ss_pred ccccCcCchHHHHHHHHHH-HH-----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSR-AR-----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~-a~-----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+.. +. ...+.||||||+|.+. ...++.|+..++.. ..++.+|++|
T Consensus 87 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~ 147 (327)
T 1iqp_A 87 ERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSC 147 (327)
T ss_dssp HHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred cCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 422 1112222221 11 1457899999999997 56678888888753 3467788889
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
|.+..+.+++.+ |+. .+.|++|+.++...++...+...+... +..++.++
T Consensus 148 ~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 148 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred CCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999988 886 889999999999999998887665432 22345555
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=148.51 Aligned_cols=195 Identities=21% Similarity=0.221 Sum_probs=129.0
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCCeEEEec
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----------GVPFYKISA 191 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----------~~~~~~i~~ 191 (702)
.++++|.++.++.+...+...+. -..+.+++|+||||||||++++++++.+ +.+++.++|
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 48899999999999987754332 2345689999999999999999999987 889999998
Q ss_pred hhhh-cc-----------------cccccHHH-HHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 192 TEVV-SG-----------------VSGASEEN-IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 192 ~~l~-~~-----------------~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.... .. ..+..... +..++..+. ..+.+|||||+|.+...... .. ++..+
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~-------~~---~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGG-------DI---VLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTS-------HH---HHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCC-------ce---eHHHH
Confidence 7653 11 11221222 333333332 33339999999998754211 11 12222
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-c-cc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-L-RV 327 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-~-~~ 327 (702)
-.. ..++.+|++||.+ +.+++++++ ||...+.|++|+.++..+|+...+.. . ..
T Consensus 159 ~~~-------------------~~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~ 217 (384)
T 2qby_B 159 LRS-------------------DANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKG 217 (384)
T ss_dssp HTS-------------------SSCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTT
T ss_pred hcC-------------------CcceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccC
Confidence 211 0248899999986 688999998 98779999999999999999987653 1 11
Q ss_pred C-CcccHHHHHhhCCC--CCHHHHHHHHHHHHHH
Q 045279 328 E-GSFDLVKIARSTPG--FVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~-~~~~~~~la~~t~g--~~~~dl~~l~~~a~~~ 358 (702)
. ....+..+++.+.+ .+.+.+.+++..|...
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 1 12234455555441 2455666666665443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-13 Score=140.31 Aligned_cols=207 Identities=22% Similarity=0.290 Sum_probs=134.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|++++|.+.+++.+...+..... .-.+..+++|+|||||||||+++++|+.++.++...++..+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 799999999999888766632111 0123467999999999999999999999999887766544321
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
...+..++.. ...+.|+||||+|.+... ..+.|+..++.....+..+........ ......+.++
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i-~~~l~~~~li 154 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSI-RIDIQPFTLV 154 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC----------------CCCEEE
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccc-cccCCCeEEE
Confidence 1223333322 124569999999988641 122233444432110000000000000 0011236778
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++|+.+..+++++++ ||...+.+++|+.+++.+|++...+......+. .+..++..+.| +++.+..+++.+...+
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 899999999999999 998788999999999999999887655544333 36667777776 5678888887765544
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-14 Score=155.73 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=124.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEec-----cccccc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKG-----PELLNK 502 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~-----~~l~~~ 502 (702)
.+.|.+.+++.+...+. .+.++||+||||||||++|+++|..++ .+|..+.+ +++++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 46777877765544321 235899999999999999999999884 35555544 334443
Q ss_pred CcCchHHHHHHHHHHHHhC---CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------CCCcEEEEEe
Q 045279 503 YVGESELAVRTLFSRARTC---SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------KRKGVFVIGA 571 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~a 571 (702)
+.+..... ...|..+... .++|||||||+.+. ..+++.|+..|+... .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 33322111 1223222221 46799999999877 788899999886421 1122356778
Q ss_pred cCCCC---ccCccccCCCccceEEEcCCCCH-HHHHHHHHHHhccCC-----------------------CCCCC-CHHH
Q 045279 572 TNRPD---VMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALARKKP-----------------------IDDSV-DLHT 623 (702)
Q Consensus 572 tn~~~---~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~~~-----------------------~~~~~-~~~~ 623 (702)
||.+. .+.+++++ ||...+.+|+|+. +++..|++....... +..+. -++.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~ 233 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFEL 233 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHH
Confidence 88632 24468888 9999999999987 678888876543110 00011 1233
Q ss_pred Hhhhh-------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 624 IAQSK-------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 624 la~~~-------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
++... ...+.|.+.+..+++.|...|.-+... .|+.+|+.
T Consensus 234 i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~-----------~Vt~eDv~ 280 (500)
T 3nbx_X 234 IFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS-----------AVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS-----------BCCGGGGG
T ss_pred HHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc-----------cccchHHH
Confidence 33211 123778888888888777666655432 56666666
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=145.45 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=131.0
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
.+|++++|.+.+++.+...+.. + +.++.+||+||||||||++++++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3799999999999999987732 1 234578999999999999999999988642
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.++... ......++.++..+. .+.+.|++|||+|.+... ..+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-----------HHHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-----------HHHHHHHHH
Confidence 22222211 011123455555543 234679999999988532 234566666
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+.++++|++|+.+..+.+.+++ |+ ..+.|++|+.++..+++...++........
T Consensus 144 e~-------------------~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 201 (373)
T 1jr3_A 144 EE-------------------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 (373)
T ss_dssp HS-------------------CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH
T ss_pred hc-------------------CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 64 24458899999988899999998 88 789999999999999999887665443322
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..++..+.| +.+.+.++++.+.
T Consensus 202 a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 202 ALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 35667777766 7777777776653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=145.09 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~ 197 (702)
.+|++++|.+..+..+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 379999999999999887774422 2346899999999999999999999875 68999999876332
Q ss_pred c-----ccccHH-------HHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 198 V-----SGASEE-------NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 198 ~-----~g~~~~-------~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
. .|.... ...+.|..+ .+++||||||+.+... ....|+..++.... ...++.
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~-~~~g~~- 135 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-----------VQEKLLRVIEYGEL-ERVGGS- 135 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEE-CCCCC--
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCe-ecCCCc-
Confidence 1 111000 011233333 3469999999988643 23456666664321 111111
Q ss_pred CCCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcC----cccC--
Q 045279 266 SKSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRN----LRVE-- 328 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~----~~~~-- 328 (702)
...+.++.+|+|||.. ..+++.+.+ ||.. +.+..|+..+ ...++..++.. ....
T Consensus 136 ------~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~ 206 (265)
T 2bjv_A 136 ------QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLF 206 (265)
T ss_dssp -------CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ------ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1112348899999984 247788888 8843 4555555544 34444444322 2221
Q ss_pred --Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 329 --GS-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 329 --~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.. ..+..+....-..+.++|.+++..++..
T Consensus 207 ~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 207 PGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp CCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11 1233444443334678888888876543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=144.58 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=118.0
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccC
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKY 503 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~ 503 (702)
+|++++|.+.....+.+.+.... ..+.+++|+||||||||++|++++..+. .+|+.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57788888887777666554432 2346899999999999999999999874 689999998763211
Q ss_pred -----cCchHH----H---HHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------C
Q 045279 504 -----VGESEL----A---VRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------K 562 (702)
Q Consensus 504 -----~g~~~~----~---~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~ 562 (702)
.|.... . ....|..+ .+++|||||++.+. ...+..|+..|+... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 111000 0 01123222 46899999999998 667778887776421 1
Q ss_pred CCcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhcc----CCCCC--CCCHHHHhh
Q 045279 563 RKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARK----KPIDD--SVDLHTIAQ 626 (702)
Q Consensus 563 ~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~--~~~~~~la~ 626 (702)
..++.||+|||.+ ..+++++.+ ||. ..+.+|++.. ++...+++.+++. .+... ...-+.+.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~- 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE- 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH-
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH-
Confidence 2457889999974 246788877 886 3566666654 4555565555443 22211 22222222
Q ss_pred hhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
.+ ...|.| ++|+++++.++..+
T Consensus 216 -~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 216 -TLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp -HHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred -HHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 11 134544 78889988877543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=144.49 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=123.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|+++.|.+.+.+.+...+. . ....+ +++|+||+|+|||++++++++.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~----------~-~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD----------Q-PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT----------C-TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh----------h-CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 45578899999888776665430 0 11223 3999999999999999999996411
Q ss_pred ---------------eEEEEecccccccCcCchHHHHHHHHHHHH--------------hCCCeEEEEeCcchhhcccCC
Q 045279 490 ---------------NFIHIKGPELLNKYVGESELAVRTLFSRAR--------------TCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 490 ---------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~~~vl~iDEid~l~~~r~~ 540 (702)
.++.++.++.. ......++.++..+. ...|.||+|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 12233322210 011113455554432 2367799999999976
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC--C
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD--S 618 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~ 618 (702)
....+.|+..|+... .++.+|++||.++.+.+++.+ |+ ..+.|++|+.+++..+++..+++.++.. +
T Consensus 148 ------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp ------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 566778888887653 357788889999999999988 88 7899999999999999999887655432 3
Q ss_pred CCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 619 VDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 619 ~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..++.++.. +++|+|.+++...
T Consensus 217 ~~l~~i~~~------~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 217 DILKRIAQA------SNGNLRVSLLMLE 238 (354)
T ss_dssp HHHHHHHHH------HTTCHHHHHHHHT
T ss_pred HHHHHHHHH------cCCCHHHHHHHHH
Confidence 345666632 3445555554433
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=160.06 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=136.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE----ecccccccCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI----KGPELLNKYV 504 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i----~~~~l~~~~~ 504 (702)
..+.|++.+|+.+.-.+... ..........+...++||+||||||||++|+++|..++..++.. ++.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 55788888877653322110 00000001123334899999999999999999999887665442 2233332221
Q ss_pred CchHHH----HHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEE
Q 045279 505 GESELA----VRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVI 569 (702)
Q Consensus 505 g~~~~~----~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI 569 (702)
...... ....+..| .++||||||+|.+. ...++.|+..|+... ...++.||
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 110000 01122333 45899999999997 667788888887532 13467899
Q ss_pred EecCCCC-------------ccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhccCCC--------------------
Q 045279 570 GATNRPD-------------VMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARKKPI-------------------- 615 (702)
Q Consensus 570 ~atn~~~-------------~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~~~~-------------------- 615 (702)
+|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9985 5556667777 77788776654221
Q ss_pred ------CCCCCHHHHhhhhc------------CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 616 ------DDSVDLHTIAQSKF------------CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 616 ------~~~~~~~~la~~~~------------~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
-.+...+.+..... .-+.+.+.+.++++.|...|..+.. ..|+.+|+..|+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~-----------~~V~~~dv~~Ai 584 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK-----------AEVTREDAERAI 584 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS-----------CCSSHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc-----------CCCCHHHHHHHH
Confidence 11112222332100 1256778888888877765544332 278999999998
Q ss_pred hhcCC
Q 045279 678 SKISP 682 (702)
Q Consensus 678 ~~~~~ 682 (702)
.-+..
T Consensus 585 ~l~~~ 589 (595)
T 3f9v_A 585 NIMRL 589 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.9e-14 Score=144.28 Aligned_cols=198 Identities=19% Similarity=0.234 Sum_probs=122.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc---
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG--- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~--- 197 (702)
++|+|.+..++.+.+.+... .....+|||+||||||||++|++|+... +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 36889999999888877442 2445789999999999999999999965 578999999876432
Q ss_pred ----------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 198 ----------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 198 ----------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
+.|... .....|..+. +++||||||+.+... ....|+..++.... ...|+.
T Consensus 71 ~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~-~~~g~~--- 131 (304)
T 1ojl_A 71 SELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISPL-----------MQVRLLRAIQEREV-QRVGSN--- 131 (304)
T ss_dssp HHHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBC-CBTTBC---
T ss_pred HHhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCHH-----------HHHHHHHHHhcCEe-eecCCc---
Confidence 111111 1234555553 359999999988643 23457777775321 111111
Q ss_pred CCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcCc----c---cCC
Q 045279 268 SDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRNL----R---VEG 329 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~~----~---~~~ 329 (702)
...+.++.||+|||.. ..+++.|.. ||. .+.+..|+..+ ...++..++... . ...
T Consensus 132 ----~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~ 204 (304)
T 1ojl_A 132 ----QTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGF 204 (304)
T ss_dssp ----CCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred ----ccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCC
Confidence 1123458999999984 246677777 874 45555555544 344555544332 1 111
Q ss_pred c-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
. ..+..+....-..+.++|.+++..++..
T Consensus 205 s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 205 TPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 1 1244455544233778888888877543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-13 Score=141.81 Aligned_cols=203 Identities=19% Similarity=0.198 Sum_probs=132.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEV 194 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l 194 (702)
...++++|.+..++.+.+.+...+. ...+.+++|+||||||||++++.+++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3568999999999999877643221 2345689999999999999999999988 888999998753
Q ss_pred hcc----------------cccccHHH-HHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 195 VSG----------------VSGASEEN-IRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 195 ~~~----------------~~g~~~~~-~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
... ..+..... ...++...... .|.+|+|||++.+...... ..+..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~- 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV- 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc-
Confidence 211 11222222 33444443333 3889999999998754211 2344455555422
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcc--cC-C
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLR--VE-G 329 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~--~~-~ 329 (702)
...++.+|++|+.+ ..+++.+.+ ||. ..+.+++|+.++..+++...+.... .. .
T Consensus 160 -----------------~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~ 220 (386)
T 2qby_A 160 -----------------NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP 220 (386)
T ss_dssp -----------------CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC
T ss_pred -----------------CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 12348889999876 467888888 775 4899999999999999987665321 11 1
Q ss_pred cccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 045279 330 SFDLVKIARSTP--GFVGADLAALANKAGNLA 359 (702)
Q Consensus 330 ~~~~~~la~~t~--g~~~~dl~~l~~~a~~~a 359 (702)
...+..++..+. ..+++.+..++..+...+
T Consensus 221 ~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 221 DNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 122344554444 135566666777665443
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=142.65 Aligned_cols=188 Identities=17% Similarity=0.261 Sum_probs=119.4
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK---- 502 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 502 (702)
+++|.....+.+.+.+... ...+.++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4667776666665555433 1346789999999999999999999976 678999999876431
Q ss_pred ---------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCC
Q 045279 503 ---------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRK 564 (702)
Q Consensus 503 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~ 564 (702)
|.|... .....|..+ .+++|||||++.+. ...+..|+..|+... ...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccC
Confidence 111111 122345555 45899999999998 677888888887532 124
Q ss_pred cEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCC--HHHHHHHHHHHhcc----CCCC-CCCC---HHHHhh
Q 045279 565 GVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPT--PDERGLILEALARK----KPID-DSVD---LHTIAQ 626 (702)
Q Consensus 565 ~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~----~~~~-~~~~---~~~la~ 626 (702)
++.||+|||.. ..+++.+.. ||. ..|.+|++. .++...++..++.. .+.. .... ++.+.
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~- 213 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI- 213 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH-
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH-
Confidence 57899999975 235666666 775 335666665 34555666665543 2211 1122 23333
Q ss_pred hhcCCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKFCENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~~~~~sg--~dl~~~~~~a~~~a 649 (702)
. ..|.| ++|++++..|+..+
T Consensus 214 -~--~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 214 -H--YDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp -H--CCCSSHHHHHHHHHHHHHHHC
T ss_pred -c--CCCCCCHHHHHHHHHHHHHhC
Confidence 1 13444 78888888887543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-13 Score=140.47 Aligned_cols=186 Identities=18% Similarity=0.166 Sum_probs=121.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--------------- 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------------- 184 (702)
+.+|++++|++.+++.+...+.. .-+.+ +++|+|||||||||+++++++.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~-----------~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ-----------PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC-----------TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh-----------CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 44899999999999888764410 11223 3999999999999999999996521
Q ss_pred --------------CeEEEechhhhcccccccHHHHHHHHHHHH--------------hhCCceEEechhhHhhhcchhh
Q 045279 185 --------------PFYKISATEVVSGVSGASEENIRDLFSKAY--------------RTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 185 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~p~il~iDEid~l~~~~~~~ 236 (702)
.++.++++... ......++..+..+. ...|.|++|||++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~---- 149 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD---- 149 (354)
T ss_dssp --------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH----
T ss_pred cccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH----
Confidence 12222222110 001112344444332 235679999999885422
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
..+.|+..+++. +.++.+|.+|+.+..+.+.+++ |+ ..+.|++|+.+++.+
T Consensus 150 -------~~~~L~~~le~~-------------------~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 150 -------AQAALRRTMEKY-------------------SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp -------HHHHHHHHHHHS-------------------TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHH
T ss_pred -------HHHHHHHHHHhh-------------------cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHH
Confidence 233466666653 2237888889999999999999 99 789999999999999
Q ss_pred HHHHhhcCcccCC--cccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 317 ILSVLTRNLRVEG--SFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 317 Il~~~~~~~~~~~--~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
++...+....... ...+..+++.+.| +.+++.++++.+
T Consensus 201 ~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 201 ILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9998876554432 2345667766655 566665655544
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=140.65 Aligned_cols=201 Identities=17% Similarity=0.091 Sum_probs=132.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCc--eEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechhhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMA--GILLYGPPGCGKTKLAHAIANET----GVPFYKISATEVV 195 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~--~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~~~l~ 195 (702)
..++++|.+..++.+...+...+.. ..+. +++|+||||||||++++++++.+ +..++.++|....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 4589999999999999877543221 2234 89999999999999999999998 5678889876543
Q ss_pred cc----------------cccccHHHHHHHHHH-HH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 196 SG----------------VSGASEENIRDLFSK-AY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 196 ~~----------------~~g~~~~~~~~~f~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.. ..+.....+...+.. .. ...|.+|+|||+|.+. ...+..|+..++....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 21 011122222222222 22 2457899999999882 1234445555543210
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCcc---cCCc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNLR---VEGS 330 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~~---~~~~ 330 (702)
. ...++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.... .-..
T Consensus 155 ~---------------~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~ 217 (389)
T 1fnn_A 155 L---------------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE 217 (389)
T ss_dssp H---------------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCH
T ss_pred C---------------CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCH
Confidence 0 00248899999887 578888888 8864 799999999999999988765411 1122
Q ss_pred ccHHHHHhhCC--------CCCHHHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTP--------GFVGADLAALANKAGNLA 359 (702)
Q Consensus 331 ~~~~~la~~t~--------g~~~~dl~~l~~~a~~~a 359 (702)
..+..++..+. +..++.+..+++.|...+
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 34556676663 236777788887776554
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-14 Score=130.31 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=66.6
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~ 201 (702)
+|+|.+..++++.+.+... .....+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 6789999999988877432 2345679999999999999999999986 67899 999987654
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
......|..+. +++|||||||.+...
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTRE 91 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCHH
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCHH
Confidence 22355666663 359999999988743
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=136.27 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=110.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechhhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-----PFYKISATEVV 195 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~i~~~~l~ 195 (702)
.+|++++|++.+++.|...+.. | + ..+++|+||||||||++++++|+.+.. .+..+++++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~- 87 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD- 87 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence 3899999999999999877632 2 1 124999999999999999999998743 3556665542
Q ss_pred cccccccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.+ ...++..+..... ..+.|++|||+|.+.... .+.|+..++..
T Consensus 88 ---~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~-------------- 137 (340)
T 1sxj_C 88 ---RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERY-------------- 137 (340)
T ss_dssp ---CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHT--------------
T ss_pred ---cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhcC--------------
Confidence 11 2233333333221 236799999999886422 33466667653
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR 326 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~ 326 (702)
+..+.+|.+||.+..+.+++++ |+ ..+.|..++.++..+++...+....
T Consensus 138 -----~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 138 -----TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp -----TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -----CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcC
Confidence 2347788889999999999999 98 5789999999999999988775443
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=146.94 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=99.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech-----hhhc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISAT-----EVVS 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~-----~l~~ 196 (702)
..|+|.+++++.+...+. .+.++||+||||||||++|++||+.++ .+|..+++. ++..
T Consensus 22 ~~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 458899999988775552 236899999999999999999999884 345555443 3333
Q ss_pred ccccccHHHHHHHHHHHHhh---CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT---APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.+..... .+.|..+..+ .++|||||||+.+.+ .....|+..|++....+ .|. ...
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i-~G~-------~~~ 146 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRN-GAH-------VEK 146 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEEC-SSS-------EEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccC-CCC-------cCC
Confidence 222221111 2223222222 356999999976653 34456888887543322 110 111
Q ss_pred CCCeEEEEEecCCCC---CCCccccCCCCcceEEEeCCCCH-HHHHHHHHHhh
Q 045279 274 KPGYVLVIGATNRPD---AVDPALRRPGRFDREIVLGVPDE-NARVQILSVLT 322 (702)
Q Consensus 274 ~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~~~~p~~-~er~~Il~~~~ 322 (702)
.+.. ++|+|||++. ...+++++ ||...+.+++|+. +++..|+....
T Consensus 147 ~~~~-~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 147 IPMR-LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCCC-EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cchh-hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2222 4577777632 24468998 9988899999987 77889987654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=123.96 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=80.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~ 506 (702)
+++|.....+.+.+.+... .....+++|+||||||||++|++++... +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3556666655555544332 1345679999999999999999999976 77899 999887554
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
......|..+ .+++|||||+|.+. ...+..|+..|... ..++.+|+|||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~-----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT-----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC-----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC-----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2234566666 45899999999998 67777888877433 3456788889874
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-14 Score=131.63 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=80.8
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHH
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~ 204 (702)
+++|.+..++++.+.+.... ....+|||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999999888775432 3356799999999999999999999887 99999999876543
Q ss_pred HHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec
Q 045279 205 NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT 284 (702)
Q Consensus 205 ~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at 284 (702)
...+|+.+. +++|||||+|.+.... ...|+..++... +.++.+|+||
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~~-----------q~~Ll~~l~~~~------------------~~~~~iI~~t 113 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRNI-----------QTGITFIIGKAE------------------RCRVRVIASC 113 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHHH-----------HHHHHHHHHHHT------------------TTTCEEEEEE
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHHH-----------HHHHHHHHHhCC------------------CCCEEEEEec
Confidence 356666653 4599999999886432 223555555431 2337899999
Q ss_pred CCC
Q 045279 285 NRP 287 (702)
Q Consensus 285 n~~ 287 (702)
|..
T Consensus 114 n~~ 116 (143)
T 3co5_A 114 SYA 116 (143)
T ss_dssp EEC
T ss_pred CCC
Confidence 864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=136.64 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=126.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.+++.+...+.. | .. .+++|+||||||||++|+++|+.+. ..++.++.++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 345688888988887777654431 2 22 2499999999999999999999863 2467777665
Q ss_pred ccccCcCchHHHHHHHHHHHHh------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSRART------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.. | ...++..+..... ..+.|++|||+|.+. ...++.|+..++... ..+.+|++|
T Consensus 87 ~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~--~~~~~il~~ 147 (340)
T 1sxj_C 87 DR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERYT--KNTRFCVLA 147 (340)
T ss_dssp CC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT--TTEEEEEEE
T ss_pred cc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcCC--CCeEEEEEe
Confidence 31 1 2334444433221 247899999999997 566788888887653 456677789
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
|.+..+.+++.+ |+. .+.|++++.++...++...++...+.-+ ..+..++ .++++|++.+++..
T Consensus 148 n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~------~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 148 NYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI------ELSNGDMRRVLNVL 212 (340)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHH------HHHTTCHHHHHHHT
T ss_pred cCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHH
Confidence 999999999988 986 7899999999999999888865444322 1233344 34566777766643
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=156.81 Aligned_cols=115 Identities=26% Similarity=0.350 Sum_probs=82.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|+.++.+++|+||||||||++|.+++.++ +..+..++..+.+.. .+...+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47888999999999999999999998765 455666665543211 12345677777788888
Q ss_pred hCCCeEEEEeCcchhhccc---CCC--Cch-HHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 520 TCSPCILFFDEVDALTTKR---GKE--GGW-VVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r---~~~--~~~-~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
...|++|||||++.+.+.+ +.. ... ...++++++|.+|.+.....+++||+ ||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~-tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF-INQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEE-EEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEE-Ecc
Confidence 8899999999999888642 211 111 24678899999998877667777764 443
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=135.19 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe------------------------EEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN------------------------FIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||||+|||++|+++|+.+.+. ++.+.+.+- + ...+...++.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 445679999999999999999999987432 333333210 0 1123455777877
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ..+.|++|||+|.+. ....+.|+..|+.. ..++++|++||.++.+.+++.+ |+. .+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~ 162 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RCR-LH 162 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TSE-EE
T ss_pred HHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cce-ee
Confidence 7653 346899999999998 67789999999853 4577888889999999999998 884 79
Q ss_pred EcCCCCHHHHHHHHHHHh
Q 045279 593 YVPLPTPDERGLILEALA 610 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~ 610 (702)
.|++|+.++...++....
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999998888765
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-13 Score=156.64 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=106.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE----echhhhcccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----SATEVVSGVS 199 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----~~~~l~~~~~ 199 (702)
..|+|++.+|+.+.-.+.. ..+.......++...++||+||||||||++|+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 5689999988777432211 000000001234445899999999999999999999987655432 2233322211
Q ss_pred -----cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 200 -----GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 200 -----g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|..... .+.+..| .++|+||||||.+.... ...|+..|+.....+...+ .....
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~~-----------q~~Ll~~le~~~i~i~~~g------~~~~~ 431 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDED-----------RVAIHEAMEQQTVSIAKAG------IVAKL 431 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSHH-----------HHHHHHHHHSSSEEEESSS------SEEEE
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhCCHhH-----------hhhhHHHHhCCEEEEecCC------cEEEe
Confidence 111000 1233334 34599999999886432 3457777775332211111 11112
Q ss_pred CCeEEEEEecCCCC-------------CCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCc
Q 045279 275 PGYVLVIGATNRPD-------------AVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 275 ~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
+.++.||||||+.. .+++++++ ||+. .+..+.|+.+ ...|++..+...
T Consensus 432 ~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 432 NARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred cCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 34589999999986 89999999 9974 4556667767 788887776544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-13 Score=150.05 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=95.0
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------------------CCCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------------------DKRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------------------~~~~~~~vI~atn~~--~~ld~ 580 (702)
.+++|||||++.+. ..+++.|+..|+.. ....++.||+|||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 66899999999987 77888888887732 112367899999986 68999
Q ss_pred cccCCCccc---eEEEcCCC---CHHHHHHHHHHHhccCC-----C-CCCCCHHHHhhhhc-CCC------CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPLP---TPDERGLILEALARKKP-----I-DDSVDLHTIAQSKF-CEN------LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~p---~~~~r~~il~~~~~~~~-----~-~~~~~~~~la~~~~-~~~------~sg~dl~~~ 641 (702)
+|++ ||+ ..+.|+.. ..+....+++.+.+... . -.+..+..+..... ..| .+-+++.++
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9999 996 46666542 34455666655433211 1 11223444443211 123 257999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKT 694 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~ 694 (702)
++.|...|..+.. ..|+.+|+.+|++.. ..+.++..+.|..
T Consensus 348 lr~A~~~A~~~~~-----------~~I~~edv~~A~~~~-~~i~~~~~e~~l~ 388 (604)
T 3k1j_A 348 VRAAGDIAVKKGK-----------KYVEREDVIEAVKMA-KPLEKQLADWYIE 388 (604)
T ss_dssp HHHHHHHHHHTTC-----------SSBCHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-----------ccccHHHHHHHHHhh-hhhHHHHHHHHhc
Confidence 9998766644322 279999999999754 3344555555543
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-13 Score=121.48 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=90.8
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHH
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL 509 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~ 509 (702)
+++|.+...+.+.+.+.... ..+.+++|+||||||||++|++++.... +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 35677777666666554331 3456799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC-Cc----cCccccC
Q 045279 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP-DV----MDRAVLR 584 (702)
Q Consensus 510 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~-~~----ld~a~~r 584 (702)
...+|..+ .+++|||||+|.+. ...+..|+..|+... ..++.+|+|||.+ +. +++.+..
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~~~~~~~~~~~~L~~ 130 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYAAGSDGISCEEKLAG 130 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEECTTTC--CHHHHHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCCHHHHHhCccHHHHH
Confidence 34566655 45899999999998 566777777776532 3457788888864 33 3344444
Q ss_pred CCccc-eEEEcCCC
Q 045279 585 PGRFG-KLLYVPLP 597 (702)
Q Consensus 585 ~gRf~-~~i~~~~p 597 (702)
|+. ..|.+|+.
T Consensus 131 --rl~~~~i~lPpL 142 (143)
T 3co5_A 131 --LFSESVVRIPPL 142 (143)
T ss_dssp --HSSSEEEEECCC
T ss_pred --HhcCcEEeCCCC
Confidence 543 35666653
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.3e-12 Score=129.37 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=100.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecccccccCcCchHHHHHHHHHHHHhC----CCeEEEEeCcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPELLNKYVGESELAVRTLFSRARTC----SPCILFFDEVD 532 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid 532 (702)
..++|||||||+|||++|+++|+.+ ..+++.+++++- ..+...+|.+++.+... ...|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4589999999999999999999864 346777775420 12345578888887643 24799999999
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
.+. ....|.||..|+.. ..++++|++||.+..+.|++.+ | ++.|++|+.++...++...+
T Consensus 93 ~lt-----------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMT-----------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBC-----------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HhC-----------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 998 77889999999854 4567777888889999999998 8 89999999999988888776
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-11 Score=125.40 Aligned_cols=175 Identities=20% Similarity=0.269 Sum_probs=118.2
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------------
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------------- 185 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------------- 185 (702)
-.++++++.+...+.. -+.++.+||+||||+|||++|+++|+.+...
T Consensus 5 pw~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3456777777766521 2345679999999999999999999988543
Q ss_pred ---eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 186 ---FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 186 ---~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
++.+++.. +........++.+++.+.. +.+.|++|||+|.|... ..+.|+..+++
T Consensus 73 ~~d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-----------a~naLLk~lEe---- 134 (334)
T 1a5t_A 73 HPDYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEE---- 134 (334)
T ss_dssp CTTEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTS----
T ss_pred CCCEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-----------HHHHHHHHhcC----
Confidence 22232210 0011223456677666542 34579999999988642 23467887775
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHh
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIAR 338 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~ 338 (702)
.+.++++|.+||.++.+.|.+++ |+ ..+.|+.|+.++..+++.... .+ ....+..+++
T Consensus 135 ---------------p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~ 192 (334)
T 1a5t_A 135 ---------------PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALR 192 (334)
T ss_dssp ---------------CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHH
T ss_pred ---------------CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHH
Confidence 24458888899999999999999 98 679999999999999998765 11 1223455666
Q ss_pred hCCCCCHHHHHHHHHH
Q 045279 339 STPGFVGADLAALANK 354 (702)
Q Consensus 339 ~t~g~~~~dl~~l~~~ 354 (702)
.+.| +.+.+..+++.
T Consensus 193 ~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 193 LSAG-SPGAALALFQG 207 (334)
T ss_dssp HTTT-CHHHHHHTTSS
T ss_pred HcCC-CHHHHHHHhcc
Confidence 6655 55555544443
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=123.84 Aligned_cols=206 Identities=17% Similarity=0.108 Sum_probs=124.8
Q ss_pred cccCCcccchhhhHHHH-HHHhhChHHHHHcCC-CCCcceEE--EcCCCCChhHHHHHHHHHh---------CCeEEEEe
Q 045279 429 EDVGGLDYLRHEFDRYI-VRRIKFPEEYEEFGV-DLETGFLL--YGPPGCGKTLIAKAVANEA---------GANFIHIK 495 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~~~ll--~Gp~GtGKT~la~~la~~~---------~~~~~~i~ 495 (702)
+.+.|.+...+.+...+ ..... +. ..+..+++ +||||+|||++++.+++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888777777665 43321 10 23457889 9999999999999999876 45677887
Q ss_pred ccccccc----------------CcCchHHH-HHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 496 GPELLNK----------------YVGESELA-VRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 496 ~~~l~~~----------------~~g~~~~~-~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
+....+. ..+.+... ...+..... ...|.||+|||++.+...+... ...+..++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6432110 01111112 222322222 2457899999999987431111 45556565555
Q ss_pred hCCC-CC--CcEEEEEecCCCC---ccC---ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCC---CCCCCHHHHh
Q 045279 558 DGAD-KR--KGVFVIGATNRPD---VMD---RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPI---DDSVDLHTIA 625 (702)
Q Consensus 558 ~~~~-~~--~~~~vI~atn~~~---~ld---~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~la 625 (702)
.... .. .++.||++|+.++ .++ +.+.+ |+...+.+++++.++..+++...+..... ..+..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 4432 12 6788888887665 344 55656 66666999999999999999877653211 1122234444
Q ss_pred hhhcCCC-----CCHHHHHHHHHHHHHHHHH
Q 045279 626 QSKFCEN-----LSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 626 ~~~~~~~-----~sg~dl~~~~~~a~~~a~~ 651 (702)
..+.. -..+.+.++++.|+..+..
T Consensus 247 --~~~~~~~~~~G~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 247 --DVYGEDKGGDGSARRAIVALKMACEMAEA 275 (412)
T ss_dssp --HHHCGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 33431 2446777788777655543
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-12 Score=102.70 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||..|+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~-----------~~i~~~df~~Al 68 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYV--ARPDKISGADINSICQESGMLAVRENR-----------YIVLAKDFEKAY 68 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHH--TSSCCCCHHHHHHHHHHHHHGGGTSCC-----------SSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc-----------CCcCHHHHHHHH
Confidence 6789999999999999988899999999 679999999999999999999887642 379999999999
Q ss_pred hhcCCCCCHHHHHHHH
Q 045279 678 SKISPSVSELQIQRYK 693 (702)
Q Consensus 678 ~~~~~~~~~~~~~~~~ 693 (702)
.+++|+++ ++++.|+
T Consensus 69 ~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 69 KTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHCC-----------
T ss_pred HHHccCch-HHHHhcC
Confidence 99999998 7777774
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=124.72 Aligned_cols=142 Identities=14% Similarity=0.191 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhhhcccccc
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l~~~~~g~ 201 (702)
|++++++.+...+.. +. ..++||+||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888877622 22 5689999999999999999999863 346677765420 12
Q ss_pred cHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 202 SEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
....++.+++.+... ...|+||||+|.|... ..+.|+..+++ .+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-----------a~naLLk~LEe-------------------p~~~ 112 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-----------AANAFLKALEE-------------------PPEY 112 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-----------HHHHTHHHHHS-------------------CCTT
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-----------HHHHHHHHHhC-------------------CCCC
Confidence 334567777776432 2469999999998643 24568888885 2456
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
+++|.+|+.+..+.|.+++ | .+.|++|+.++..+++...+
T Consensus 113 t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 113 AVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8888888989999999999 8 68999999999999998776
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=101.88 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++... .|+++||+.|+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA--~~t~G~SGADl~~l~~eAa~~a~r~~~~-----------~i~~~df~~Al 68 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARRK-----------VATEKDFLKAV 68 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHSCS-----------SBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHhccc-----------cCCHHHHHHHH
Confidence 5678999999999999999999999999 6799999999999999999999998532 79999999999
Q ss_pred hhcCCCCCHH-HHHHHHHH
Q 045279 678 SKISPSVSEL-QIQRYKTL 695 (702)
Q Consensus 678 ~~~~~~~~~~-~~~~~~~~ 695 (702)
+++.++.... ....|..|
T Consensus 69 ~~v~~~~~~~~~~~~y~~w 87 (88)
T 3vlf_B 69 DKVISGYKKFSSTSRYMQY 87 (88)
T ss_dssp HHHTC--------------
T ss_pred HHHhcCcccccchhHHhcc
Confidence 9999987653 45667666
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.8e-10 Score=141.33 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=93.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
..+..+.||+|||||.+++.+|+.+|.+++.++|++- -....+..+|..+... +.+.++||++.+....-...
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~------~d~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG------FDLQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC------CCHHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC------CCHHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHHH
Confidence 3467899999999999999999999999999999873 2334566677766544 45999999987753322111
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDENA 313 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~e 313 (702)
.+. +..+...+......+.-.. +....-+..+.|++|+|+ ..+++++++. || +.|.+..|+.+.
T Consensus 677 ~~q----i~~I~~a~~~~~~~~~~~~-----G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 677 SQQ----IQTIQVALKENSKEVELLG-----GKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp HHH----HHHHHHHHHHTCSEECCC--------CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred HHH----HHHHHHHHHcCCCeEEecC-----CCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 111 1111122221111111110 001111234788999996 4589999999 99 779999999988
Q ss_pred HHHHHH
Q 045279 314 RVQILS 319 (702)
Q Consensus 314 r~~Il~ 319 (702)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777753
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-12 Score=157.19 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC--------chHHHHHHHHHHHHh---
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG--------ESELAVRTLFSRART--- 520 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g--------~~~~~~~~~f~~a~~--- 520 (702)
|+.++..++|+|+||+|||++|..+|..+ +.+++.++..+....+ .| ..+..+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 47788889999999999999999998866 4568888877655432 12 112224455555443
Q ss_pred -CCCeEEEEeCcchhhc-c----cCCCCc-hHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 521 -CSPCILFFDEVDALTT-K----RGKEGG-WVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 521 -~~~~vl~iDEid~l~~-~----r~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
..|++||||.+..+.. . +.++.. ....+.+++++..|.......++.||+++.-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999875 2 111111 2334557888888877666777778777654
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=100.50 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=70.2
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHH
Q 045279 594 VPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHF 673 (702)
Q Consensus 594 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~ 673 (702)
-.+|+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++.. ..|+++||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA--~~T~G~SGADL~~l~~eAa~~alr~~~-----------~~I~~~df 74 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR-----------VHVTQEDF 74 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHH--HTCSSCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 36899999999999999999988899999999 679999999999999999999998752 37999999
Q ss_pred HHHHhhcCCC
Q 045279 674 EQALSKISPS 683 (702)
Q Consensus 674 ~~al~~~~~~ 683 (702)
+.|+.++.|.
T Consensus 75 ~~Al~~v~p~ 84 (86)
T 2krk_A 75 EMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHccC
Confidence 9999998774
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-11 Score=97.26 Aligned_cols=75 Identities=29% Similarity=0.456 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
|+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~-----------~~i~~~d~~ 67 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR-----------VHVTQEDFE 67 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCHHHHH
Confidence 7899999999999999999988899999999 678999999999999999999998843 379999999
Q ss_pred HHHhhcCC
Q 045279 675 QALSKISP 682 (702)
Q Consensus 675 ~al~~~~~ 682 (702)
.|+.++..
T Consensus 68 ~Al~~v~~ 75 (78)
T 3kw6_A 68 MAVAKVMQ 75 (78)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998754
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-11 Score=134.85 Aligned_cols=50 Identities=28% Similarity=0.378 Sum_probs=42.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
...|++++|.+.+++.+...+. .+.+++|+|||||||||+|++|++.+..
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3479999999999988886662 2358999999999999999999998853
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.8e-10 Score=119.98 Aligned_cols=209 Identities=16% Similarity=0.079 Sum_probs=125.1
Q ss_pred CcccccCHHHHHHHHHHHh-hhhccCCCcccccCCCCCceEEE--ECCCCCCHHHHHHHHHHHh---------CCCeEEE
Q 045279 122 RFQDLGGMESVLEELKMEV-IVPLYHPQLPQWLGVRPMAGILL--YGPPGCGKTKLAHAIANET---------GVPFYKI 189 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLl--~GppGtGKT~la~~la~~l---------~~~~~~i 189 (702)
..+.++|.+..++.+.+.+ ......+ ...+.+++| +||||+|||++++.+++.+ +..++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 4578999999999998776 4332210 023467999 9999999999999998876 4567788
Q ss_pred echhhhc------c----------cccccHHH-HHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 190 SATEVVS------G----------VSGASEEN-IRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 190 ~~~~l~~------~----------~~g~~~~~-~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
+|..... . ..+..... ...+..... ...|.+|+|||+|.+....... ...+..++..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHH
Confidence 8643211 0 00111122 222222221 2457899999999986431100 1223334444
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCC---ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVD---PALRRPGRFDREIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld---~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
+..... . ....++.+|++++.++ .++ +.+.+ ||...+.+++++.++..+++...+...
T Consensus 168 ~~~~~~-----------~---~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~ 231 (412)
T 1w5s_A 168 HEEIPS-----------R---DGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELG 231 (412)
T ss_dssp HHHSCC-----------T---TSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccc-----------C---CCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhc
Confidence 443210 0 0013488888887654 344 66667 666669999999999999997665422
Q ss_pred cc---CCcccHHHHHhhCC------CCCHHHHHHHHHHHHHHH
Q 045279 326 RV---EGSFDLVKIARSTP------GFVGADLAALANKAGNLA 359 (702)
Q Consensus 326 ~~---~~~~~~~~la~~t~------g~~~~dl~~l~~~a~~~a 359 (702)
.. .....+..++..+. | +++.+..++..+...+
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 11 11223555666666 5 5667777777665443
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-10 Score=95.90 Aligned_cols=81 Identities=28% Similarity=0.388 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 600 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||..|+.+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA--~~t~G~SGADi~~l~~eAa~~ai~~~~-----------~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR-----------YVILQSDLEEAYAT 67 (82)
T ss_dssp -------------CEECTTCCSTTTT--TSSCCCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc-----------CCcCHHHHHHHHHH
Confidence 46889999999999888889999999 679999999999999999999998743 27999999999999
Q ss_pred c-CCCCCHHHHHHHH
Q 045279 680 I-SPSVSELQIQRYK 693 (702)
Q Consensus 680 ~-~~~~~~~~~~~~~ 693 (702)
+ .++.+..+++.|.
T Consensus 68 v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 68 QVKTDNTVDKFDFYK 82 (82)
T ss_dssp TCC------------
T ss_pred HHcCcCChHHHHhhC
Confidence 8 4777777777663
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.4e-10 Score=120.01 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcc--
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSG-- 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~-- 197 (702)
+..++|.....+++.+.+... .....+|+|+|++|||||++|++|..... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 456777777777777666331 23456799999999999999999987763 78999999986432
Q ss_pred -----------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 -----------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 -----------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
+.|.... ..++|+.|.+ ++||||||+.+.... ...|+..++.... ...|+..
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~~-----------q~~Ll~~l~~~~~-~~~g~~~- 267 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLEA-----------QAKLLRVIESGKF-YRLGGRK- 267 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHHH-----------HHHHHHHHHHSEE-CCBTCCS-
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHHH-----------HHHHHHHHhcCcE-EeCCCCc-
Confidence 2222211 2456777644 499999999887543 3457777775321 1112111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHH----HHHHHhhcCc----ccC-C-
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARV----QILSVLTRNL----RVE-G- 329 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~----~Il~~~~~~~----~~~-~- 329 (702)
..+-++++|+|||.. ..+.+.+.. |+ ..+.+..|+..+|. .++..++... ... .
T Consensus 268 ------~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 338 (387)
T 1ny5_A 268 ------EIEVNVRILAATNRNIKELVKEGKFREDLYY--RL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEG 338 (387)
T ss_dssp ------BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred ------eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCC
Confidence 112358999999973 133444444 55 34566777765553 3444443322 211 1
Q ss_pred --cccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 330 --SFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 --~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
...+..+....=-.+.++|++++..|+..
T Consensus 339 ~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 339 FTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp ECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 11233344332223678999988887654
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-10 Score=118.62 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=115.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-------------CcCchHHHHHHHHHHHHhCCCeE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-------------YVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
...+++++|++||||+++|++++... +.+|+.++|+.+... |.|.... ...+|+.| ..++
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a---~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA---DGGT 234 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT---TTSE
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC---CCcE
Confidence 34568999999999999999999876 479999999875321 1111110 12345555 4589
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG 589 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~ 589 (702)
||||||+.+. ..++..|+..|+... ...++.||+|||.. ..+.+.+.. |+.
T Consensus 235 lfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~ 301 (387)
T 1ny5_A 235 LFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG 301 (387)
T ss_dssp EEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred EEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc
Confidence 9999999998 788888988877521 12357899999973 234444443 553
Q ss_pred -eEEEcCCCCH--HHHHHHHHHHhcc----CCCC-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHHHHHHHhhcC
Q 045279 590 -KLLYVPLPTP--DERGLILEALARK----KPID-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 590 -~~i~~~~p~~--~~r~~il~~~~~~----~~~~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
..|.+|+... ++...++.+++.+ .... ....-+.+. .+ ...|.| ++|+++++.|+..+-
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~--~l~~~~wpGNvreL~~~i~~~~~~~~-------- 371 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE--LLLSYPWYGNVRELKNVIERAVLFSE-------- 371 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH--HHHHSCCTTHHHHHHHHHHHHHHHCC--------
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH--HHHhCCCCcHHHHHHHHHHHHHHhCC--------
Confidence 3456665543 4555666666543 2221 112222222 22 246766 799999998885431
Q ss_pred CCCCCCCccccHHHHHHHH
Q 045279 659 SSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al 677 (702)
...|+.+|+...+
T Consensus 372 ------~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 372 ------GKFIDRGELSCLV 384 (387)
T ss_dssp ------SSEECHHHHHHHC
T ss_pred ------CCcCcHHHCcHhh
Confidence 1268888886543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=102.78 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCcccccC----HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 120 GPRFQDLGG----MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 120 ~~~~~~i~G----~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
..+|+++++ +..+++.+.+.+. .+....+.+++|+|||||||||+++++++.+ +..++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 348999886 4444555544442 2233457889999999999999999999887 567777887
Q ss_pred hhhhcccccccHHH-HHHHHHHHHhhCCceEEechhhHh
Q 045279 192 TEVVSGVSGASEEN-IRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 192 ~~l~~~~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l 229 (702)
.++...+....... ...++.. -..|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 77654322111000 0012222 235779999999743
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=101.67 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=63.8
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcc
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVD 532 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid 532 (702)
+....+.+++|+||||||||++++++++.+ +..++.++..++...+...... ....++... ..|.+|+|||++
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~ 110 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLG 110 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCS
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCC
Confidence 334456789999999999999999999876 5566777776665432211000 001122222 267899999998
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
... ...+....+..++..... .+..+|++||.+.
T Consensus 111 ~~~------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 111 SER------LSDWQRELISYIITYRYN----NLKSTIITTNYSL 144 (180)
T ss_dssp SSC------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCCS
T ss_pred CCc------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCCh
Confidence 542 112234455555544321 2345677888753
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=113.63 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=115.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEechhhhcc----
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--FYKISATEVVSG---- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--~~~i~~~~l~~~---- 197 (702)
..++|......++.+.+... .....+++++|++||||+++|+++....+.. |+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45777777777666555321 1234569999999999999999998877543 999999986443
Q ss_pred ---------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 198 ---------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 198 ---------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.|.... -.+.|+.|.+ .+||||||+.|.... ...|+..++.... ...|+...
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~~-----------Q~~Ll~~l~~~~~-~~~g~~~~-- 259 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQRV-----------QAKLLRVLETGSF-TRLGGNQK-- 259 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHHH-----------HHHHHHHHHHSEE-CCBTCCCB--
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHHH-----------HHHHHHHHHhCCc-ccCCCCcc--
Confidence 1222211 2346666644 399999999887543 3457777775321 11121111
Q ss_pred CCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcCcc----cC---Cc
Q 045279 269 DASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRNLR----VE---GS 330 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~~~----~~---~~ 330 (702)
.+-++++|+|||.. ..+.+.|.. |+ ..+.+..|+..+ ...++..++.... .. -.
T Consensus 260 -----~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 331 (368)
T 3dzd_A 260 -----IEVDIRVISATNKNLEEEIKKGNFREDLYY--RL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS 331 (368)
T ss_dssp -----EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred -----eeeeeEEEEecCCCHHHHHHcCCccHHHHH--Hh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 12348899999862 133444544 55 345555665544 4445555544321 11 11
Q ss_pred c-cHHHHHhhC-CCCCHHHHHHHHHHHHH
Q 045279 331 F-DLVKIARST-PGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~-~~~~la~~t-~g~~~~dl~~l~~~a~~ 357 (702)
. .+..+.... +| +.++|.+++..++.
T Consensus 332 ~~a~~~L~~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 332 EETKEYLMKQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHTCCCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHHHHHHH
Confidence 1 133344333 44 66888888887754
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-09 Score=109.65 Aligned_cols=169 Identities=21% Similarity=0.354 Sum_probs=106.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEeccccccc-------------CcCchHHHHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNK-------------YVGESELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~~~~~~vl 526 (702)
....++++|++||||+.+|+++....+. .|+.++|+.+... |.|... .....|+.| ..++|
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a---~~gtl 226 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA---DQGTL 226 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT---TTSEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc---CCCeE
Confidence 3456899999999999999999987743 3999999875432 111100 011245555 45899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----C----CCcEEEEEecCCC-------CccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----K----RKGVFVIGATNRP-------DVMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~~~vI~atn~~-------~~ld~a~~r~gRf~~ 590 (702)
|||||+.+. ...+..||..|+... . ..++.+|+|||.. ..+.+.+.. |+..
T Consensus 227 fldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~ 293 (368)
T 3dzd_A 227 FLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSV 293 (368)
T ss_dssp EEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTS
T ss_pred EecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCC
Confidence 999999998 888999998887421 1 1256789999863 234444544 5543
Q ss_pred -EEEcCCCCH--HHHHHHHHHHhccC----CCCCCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 -LLYVPLPTP--DERGLILEALARKK----PIDDSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 -~i~~~~p~~--~~r~~il~~~~~~~----~~~~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.|.+|+... ++...++.+++.+. +.. ...+..-+...+ ...|.| ++|+++++.|+..
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~-~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN-CFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC-CCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC-CCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 467777665 56666666666532 211 111222221122 235666 8888888888743
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=111.63 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
|+.++..++|+||||||||++|..+|...+. .|+.....+.++.|....+..++.+++.+.... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4555666899999999999999999986543 455553344444444455666666666665544 999999999875
Q ss_pred ccCCC-CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccc
Q 045279 537 KRGKE-GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAV 582 (702)
Q Consensus 537 ~r~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~ 582 (702)
..... ......+.+.+++..|.+.....++.+|++|| +...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 11111234555566655544445677888888 55555554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=97.62 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+..++|+||+|+|||+++++++..+ +...+.++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45678999999999999999999987 666888888776543 112357899999998865321
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-CCccC--ccccCCCccceEEEcCC
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-PDVMD--RAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~~~ld--~a~~r~gRf~~~i~~~~ 596 (702)
.+.+..++..+. .....++|+|||. |..+. +.+.+ |+..-..+..
T Consensus 100 --------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 100 --------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp --------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred --------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 333334443332 1122224456664 44333 66666 7765555543
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-07 Score=97.43 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=112.1
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh---
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV--- 195 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~--- 195 (702)
+......++|.+..++.|.+ +.. ..++|+||+|+|||++++.+++.++..++++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 44466789999999999887 511 4799999999999999999999987778888876430
Q ss_pred --c---------------------------cc-----cc---c------cHHHHHHHHHHHHhh--CCceEEechhhHhh
Q 045279 196 --S---------------------------GV-----SG---A------SEENIRDLFSKAYRT--APSIVFIDEIDAIA 230 (702)
Q Consensus 196 --~---------------------------~~-----~g---~------~~~~~~~~f~~a~~~--~p~il~iDEid~l~ 230 (702)
. .. .+ . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 00 00 0 011233444444332 38899999999886
Q ss_pred hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---------CCCccccCCCCcc
Q 045279 231 SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---------AVDPALRRPGRFD 301 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---------~ld~al~r~~Rf~ 301 (702)
..... .+...|...++.. .++.+|.++.... .....+.. |+.
T Consensus 151 ~~~~~-------~~~~~l~~~~~~~--------------------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~--r~~ 201 (357)
T 2fna_A 151 KLRGV-------NLLPALAYAYDNL--------------------KRIKFIMSGSEMGLLYDYLRVEDPESPLFG--RAF 201 (357)
T ss_dssp GCTTC-------CCHHHHHHHHHHC--------------------TTEEEEEEESSHHHHHHHTTTTCTTSTTTT--CCC
T ss_pred ccCch-------hHHHHHHHHHHcC--------------------CCeEEEEEcCchHHHHHHHhccCCCCcccc--Ccc
Confidence 42111 0111122222211 1255666665421 11222332 665
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+.+++.+.++..+++...+........ ....+...+.|+.. -+..++
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHH
Confidence 78999999999999999876643322222 23677778888544 344443
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-07 Score=94.30 Aligned_cols=190 Identities=18% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc--
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-- 196 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-- 196 (702)
+...-..++|.+..++.|.+.+.. + ..++|+||+|+|||++++.+++..+ ++++++.....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 444567899999999999887632 1 5799999999999999999999875 67777654320
Q ss_pred ---c-----------cc----------------c-------ccHHHHHHHHH-HHHhhCCceEEechhhHhhhcchhhhH
Q 045279 197 ---G-----------VS----------------G-------ASEENIRDLFS-KAYRTAPSIVFIDEIDAIASKRENLQR 238 (702)
Q Consensus 197 ---~-----------~~----------------g-------~~~~~~~~~f~-~a~~~~p~il~iDEid~l~~~~~~~~~ 238 (702)
. .. + ..-..+...+. .+....|.+|+|||++.+.......
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~-- 147 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRG-- 147 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTT--
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccc--
Confidence 0 00 0 01111112222 2222348899999999886410000
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---C------CCCccccCCCCcceEEEeCCC
Q 045279 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---D------AVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 239 ~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~------~ld~al~r~~Rf~~~i~~~~p 309 (702)
...+...|...++.. .++.+|.++... . .....+. +|+...+.+++.
T Consensus 148 --~~~~~~~L~~~~~~~--------------------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl 203 (350)
T 2qen_A 148 --GKELLALFAYAYDSL--------------------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPF 203 (350)
T ss_dssp --THHHHHHHHHHHHHC--------------------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCC
T ss_pred --hhhHHHHHHHHHHhc--------------------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCC
Confidence 011222233333321 125566555432 1 1122333 266568999999
Q ss_pred CHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCCCCHHHHHHHH
Q 045279 310 DENARVQILSVLTRNLRVEG-SFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
+.++..+++...+....... ...+..+...+.|+.. -+..++
T Consensus 204 ~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 204 DKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHH
Confidence 99999999987665443222 2345567777777543 344443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.2e-09 Score=95.39 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
++..++|+||+|+|||+|++++++.+ +..+++++..++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 56789999999999999999999987 666888888776443 112357799999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=97.71 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCcccccCHHH----HHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 121 PRFQDLGGMES----VLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~G~~~----~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+|+++++.+. +++.+...+... +. ...+.+++|+||||||||++++++++.+ +.+++.+++.+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEY---EP------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHC---CS------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHh---hh------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 47899887543 334444333211 10 0123789999999999999999999887 67888888887
Q ss_pred hhcccccccH-HHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 194 VVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 194 l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+......... ..+..++.... .+.+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 6543211110 00122333332 23599999996543
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=102.85 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=88.8
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHH-HHHhCCCeEEEec-----hhhhccc-
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAI-ANETGVPFYKISA-----TEVVSGV- 198 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~l-a~~l~~~~~~i~~-----~~l~~~~- 198 (702)
|+|++.+|..|.-.+.-. +.. .+..-||||.|+||| ||++|+++ ++.+....+ +.. ..+....
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 899999887776433111 000 223348999999999 99999999 776644332 221 1121110
Q ss_pred --ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 199 --SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 199 --~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
.| ..-. .+.+..|.+ .++|||||+.+... ....|+..|++....+. |. ..+.
T Consensus 285 ~~tG-~~~~-~G~l~LAdg---Gvl~lDEIn~~~~~-----------~qsaLlEaMEe~~VtI~-G~---------~lpa 338 (506)
T 3f8t_A 285 EDRG-WALR-AGAAVLADG---GILAVDHLEGAPEP-----------HRWALMEAMDKGTVTVD-GI---------ALNA 338 (506)
T ss_dssp ESSS-EEEE-ECHHHHTTT---SEEEEECCTTCCHH-----------HHHHHHHHHHHSEEEET-TE---------EEEC
T ss_pred cCCC-cccC-CCeeEEcCC---CeeehHhhhhCCHH-----------HHHHHHHHHhCCcEEEC-CE---------EcCC
Confidence 11 1100 223334433 39999999887643 34568888887554333 11 2345
Q ss_pred eEEEEEecCCCC-----------CCCccccCCCCcceEE-EeCCCCHH
Q 045279 277 YVLVIGATNRPD-----------AVDPALRRPGRFDREI-VLGVPDEN 312 (702)
Q Consensus 277 ~v~vI~atn~~~-----------~ld~al~r~~Rf~~~i-~~~~p~~~ 312 (702)
++.||||+|+.+ .|++++++ ||+-.+ .++.|+.+
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 689999999975 78889999 997644 44555543
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-08 Score=105.80 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=120.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHH-HHHhCCeEEEE-ecc---cccccCcC
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV-ANEAGANFIHI-KGP---ELLNKYVG 505 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~l-a~~~~~~~~~i-~~~---~l~~~~~g 505 (702)
|.|++.+|..+.-.+... +.. .+...|+||.|+||| ||.+|+++ +..+....+.. .++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 778888877664322110 000 122347999999999 99999999 77654332221 111 11111000
Q ss_pred chHH-HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------CCCCcEEEEEecCCCC-
Q 045279 506 ESEL-AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------DKRKGVFVIGATNRPD- 576 (702)
Q Consensus 506 ~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vI~atn~~~- 576 (702)
.+.. .-...+..| ..+|+|+||++.+. ...+..|+..|+.. .-..++.||+|+|..+
T Consensus 286 ~tG~~~~~G~l~LA---dgGvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLA---DGGILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHT---TTSEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEc---CCCeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 0000 000122233 45899999999998 78888888888753 1235688999999865
Q ss_pred ----------ccCccccCCCccceEEE-cCCCCHHHH---------HHHHHH---Hhc--cCCCC-CCCCHHHHhh----
Q 045279 577 ----------VMDRAVLRPGRFGKLLY-VPLPTPDER---------GLILEA---LAR--KKPID-DSVDLHTIAQ---- 626 (702)
Q Consensus 577 ----------~ld~a~~r~gRf~~~i~-~~~p~~~~r---------~~il~~---~~~--~~~~~-~~~~~~~la~---- 626 (702)
.|.++++. |||.++. .+.|+.++- .+.++. +++ ..... .+...+.++.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 67778888 9997654 344443321 011222 222 11111 1111111110
Q ss_pred -hh----------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 627 -SK----------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 627 -~~----------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+. ..-+.|.+.+..+++-|...|.-+... .++.+|+..|+.-+..
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~-----------~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD-----------DVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS-----------EECHHHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC-----------CCCHHHHHHHHHHHHH
Confidence 00 223667888888988777666665443 7999999999886643
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-08 Score=79.73 Aligned_cols=76 Identities=33% Similarity=0.534 Sum_probs=67.6
Q ss_pred eCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccc
Q 045279 306 LGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWW 385 (702)
Q Consensus 306 ~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (702)
-.+|+.++|.+||+.++++..+..++++..+|+.|+||+|+||.++|++|+..++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---------------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4689999999999999999988888899999999999999999999999999887752
Q ss_pred cCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 386 RQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 386 ~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
...|+.+||..++..+.|
T Consensus 66 ----------~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 ----------RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ----------CSEECHHHHHHHHHHHHC
T ss_pred ----------CCCCCHHHHHHHHHHHcc
Confidence 146899999999987765
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-08 Score=98.99 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec--hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA--TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~--~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
|+.++..++|+||||||||+||..+|...+.++.+++. .+....+....+..+..+++..... + +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEeccccccc
Confidence 45666778999999999999999998875544333333 3222222233344444555555443 3 999999998865
Q ss_pred cc
Q 045279 232 KR 233 (702)
Q Consensus 232 ~~ 233 (702)
..
T Consensus 197 ~~ 198 (331)
T 2vhj_A 197 AA 198 (331)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=76.69 Aligned_cols=74 Identities=34% Similarity=0.550 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCccccc
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWR 386 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 386 (702)
|+|+.++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 689999999999999999988888899999999999999999999999998887651
Q ss_pred CCCChhhhhhhcccHhHHHHHHhccC
Q 045279 387 QPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 387 ~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
...|+.+||..++..+.
T Consensus 58 ---------~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 58 ---------RVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp ---------CSEECHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHH
Confidence 13688999999987653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7e-08 Score=102.30 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=78.5
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc-
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT- 536 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~- 536 (702)
++++++..++|+||||+||||++++++...+..++.+..++- . ....+. ......++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHH
Confidence 367778889999999999999999999988776655433221 0 000111 122446789999998875
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCC
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~ 596 (702)
.|+........ ....+...++|. +.|+++||+++.+ +++++|+|++..++...
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 33221111111 223444456553 4578889999999 78999999988776654
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-08 Score=93.38 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=78.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh--------C-CeEEEEecccccccCc----------Cc-----hHHHHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA--------G-ANFIHIKGPELLNKYV----------GE-----SELAVRTLFSRAR 519 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~--------~-~~~~~i~~~~l~~~~~----------g~-----~~~~~~~~f~~a~ 519 (702)
.-.+++|+||+|||++|..++... | .+++..+..++.-.+. .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 356899999999999998765443 3 5565666665543221 11 111222221112
Q ss_pred hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCH
Q 045279 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~ 599 (702)
...++||+|||++.+.+.+...... . .++..+... .....-||.+|+.+..|+.++.. |++..+.++.|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh--H----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 2357899999999997665322111 1 244455432 33455667778889999999887 9999998887643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.1e-09 Score=99.92 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=47.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
.+++|+||||||||++|++++..+ +.+++.++++++...+... ....+..++.... .+.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 789999999999999999999987 6778888887765432111 0001123333333 23699999997654
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.7e-08 Score=93.71 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=76.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH--------hC-CCeEEEechhhhcccc----------cc-----cHHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE--------TG-VPFYKISATEVVSGVS----------GA-----SEENIRDLFSKAY 214 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~--------l~-~~~~~i~~~~l~~~~~----------g~-----~~~~~~~~f~~a~ 214 (702)
.-+|++|+||||||++|..++.. .+ .+++..++.++.-... .. ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 35899999999999998886433 23 6666666665543221 11 112222222112
Q ss_pred hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccc
Q 045279 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPAL 294 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al 294 (702)
.+.++||+|||++.+.+.+...... ..++..++... ...+.+|.+|+++..++.++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r------------------~~~~~iil~tq~~~~l~~~l 140 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHR------------------HQGIDIFVLTQGPKLLDQNL 140 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTT------------------TTTCEEEEEESCGGGBCHHH
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcC------------------cCCeEEEEECCCHHHHhHHH
Confidence 3456799999999996544221110 01333333211 11256777888899999999
Q ss_pred cCCCCcceEEEeCCCCH
Q 045279 295 RRPGRFDREIVLGVPDE 311 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~ 311 (702)
+. |+...+++..|..
T Consensus 141 r~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 141 RT--LVRKHYHIASNKM 155 (199)
T ss_dssp HT--TEEEEEEEEECSS
T ss_pred HH--HhheEEEEcCccc
Confidence 98 9999998887643
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=89.47 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+++..+++||+||||||||++|.++|+.+...+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 355567899999999999999999999986544
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-07 Score=97.71 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCcccccCHH----HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEech
Q 045279 121 PRFQDLGGME----SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~----~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~ 192 (702)
.+|+++.+-. .+++.+.+.+... + -....+++|+||||||||+||+++|+.+. .+++.+++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~---~-------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY---P-------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC---S-------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc---c-------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4899988633 3334444333211 1 11357899999999999999999988654 788888888
Q ss_pred hhhcccccccH-HHHHHHHHHHHhhCCceEEechhhHh
Q 045279 193 EVVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 193 ~l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
++......... ..+..++... ..+.+|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 76554322111 1112222222 23459999999544
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=88.12 Aligned_cols=162 Identities=21% Similarity=0.225 Sum_probs=92.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------ 500 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------ 500 (702)
.-..+.|-+...+.+.+.+.. + ..++++||+|+|||++++.+++..+ .+.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 345567777766666554421 1 5789999999999999999999876 5556543321
Q ss_pred ------c---cCcCc---------------------hHHHHHHHHH----HHHhCCCeEEEEeCcchhhcccCCCCchHH
Q 045279 501 ------N---KYVGE---------------------SELAVRTLFS----RARTCSPCILFFDEVDALTTKRGKEGGWVV 546 (702)
Q Consensus 501 ------~---~~~g~---------------------~~~~~~~~f~----~a~~~~~~vl~iDEid~l~~~r~~~~~~~~ 546 (702)
. ...+. ....+..++. .+....|.+|+|||++.+...... ..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~--- 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GG--- 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TT---
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-ch---
Confidence 0 00000 0011222222 222224899999999998741100 01
Q ss_pred HHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC---------ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 547 ERLLNQLLIELDGADKRKGVFVIGATNRPDVMD---------RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 547 ~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld---------~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
..++..|-..++.. .++.+|+++.....+. ..+ .||+...+.+++.+.++..+++...+...+
T Consensus 149 ~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 KELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 23333332333322 3555665654321111 112 246767899999999999999988776544
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.9e-08 Score=98.98 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=47.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+++|+||||||||++|.++|..+ +.+++.+++++++..+... ....+..++.... .+.+|||||++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 35789999999999999999999865 4778888887765432221 1111222233332 34699999997654
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=73.99 Aligned_cols=75 Identities=27% Similarity=0.397 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCC
Q 045279 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPW 389 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (702)
+.++|.+||+.++++..+..+.++..+|..|+||+|+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 567899999999999998888999999999999999999999999999888761
Q ss_pred ChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 390 LPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 390 ~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
...|+.+||..++..+.+...
T Consensus 56 ------~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 56 ------RKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp ------CSSBCHHHHHHHHHHHTC---
T ss_pred ------cccCCHHHHHHHHHHHhcCcc
Confidence 125899999999998876543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.5e-06 Score=90.98 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc--------------------------ccCcC--ch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL--------------------------NKYVG--ES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~--------------------------~~~~g--~~ 507 (702)
++.++.-+++.||||+|||++++.++... +...+.+...+-. ..+.. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 56667778999999999999999998764 3344444322110 00111 23
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+...+.+++.+....|.+|+||=+..+...- .+......+..++..+.. .++.||++|+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~---~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV---SNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS---CHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC---ChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 4556777888888899999999655554321 111135555566666542 234555566554
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=90.64 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=91.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc-----c---------------------------cCc-------
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-----N---------------------------KYV------- 504 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~-----~---------------------------~~~------- 504 (702)
..++++||+|+|||++++.+++..+..++.+++.... + ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4789999999999999999999887777777765420 0 000
Q ss_pred C-c------hHHHHHHHHHHHHhC--CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 505 G-E------SELAVRTLFSRARTC--SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 505 g-~------~~~~~~~~f~~a~~~--~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+ . ....+..++...... .|.+|+|||++.+....+.. . ...+..+.... .++.+|+++...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~---~-~~~l~~~~~~~------~~~~~i~~g~~~ 180 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN---L-LPALAYAYDNL------KRIKFIMSGSEM 180 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC---C-HHHHHHHHHHC------TTEEEEEEESSH
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh---H-HHHHHHHHHcC------CCeEEEEEcCch
Confidence 0 0 011233444444332 38899999999987421111 1 22333333221 245566666543
Q ss_pred CccCc-------cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCC
Q 045279 576 DVMDR-------AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 576 ~~ld~-------a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~s 634 (702)
..+.. .-.-.+|+...+.+++++.++..+++...+...+...+ +...+. ..+.|+.
T Consensus 181 ~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~--~~t~G~P 243 (357)
T 2fna_A 181 GLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVY--EKIGGIP 243 (357)
T ss_dssp HHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHH--HHHCSCH
T ss_pred HHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHH--HHhCCCH
Confidence 21111 00012466678999999999999999887654333222 234444 3455654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-07 Score=88.80 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
+.+...+++||||||||||++|.++|+.+...++.+..+. +.+. +..+ ....|++|||+|.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l--~~~kIiiLDEad~~~--- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPL--TDTKVAMLDDATTTC--- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGG--TTCSSEEEEEECHHH---
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hccc--CCCCEEEEECCCchh---
Confidence 3444567999999999999999999999866543321110 0000 1111 124599999998543
Q ss_pred CCCCchHHHHHH-HHHHHhhhCCC-------CC----CcEEEEEecCCCCccC---ccccCCCccceEEEcCCC
Q 045279 539 GKEGGWVVERLL-NQLLIELDGAD-------KR----KGVFVIGATNRPDVMD---RAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 539 ~~~~~~~~~~~~-~~ll~~l~~~~-------~~----~~~~vI~atn~~~~ld---~a~~r~gRf~~~i~~~~p 597 (702)
.+.+ ..+-..++|.. .. ...-+|.|||..-.-+ +.+.+ |+. .+.|+.|
T Consensus 117 --------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 --------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp --------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred --------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 2333 33445566631 11 1234667898743223 33444 774 6777643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=80.99 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
.+.|+||+|+||||++++++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 468999999999999999999876443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.9e-07 Score=96.57 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh-
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS- 231 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~- 231 (702)
++++++..++|+||||+||||++++|++.++..++.+....- .....+..+ ....++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHh------cchhHHHHHHHHHHHHH
Confidence 477888999999999999999999999998776654332210 001111111 2335789999988764
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~ 308 (702)
.+......... ....+...+++ .+.|+.++|+++.+ +++.+++|++..+...+
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG----------------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDG----------------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHC----------------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcC----------------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 11100000000 11233444442 25678889999999 78999888876554433
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=71.67 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCC
Q 045279 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPW 389 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (702)
+.++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999988788899999999999999999999999988765431
Q ss_pred ChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 390 LPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 390 ~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
...|+.+||..++..+.|+..
T Consensus 56 ------~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 ------RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp ------CSSBCHHHHHHHHHHHCC---
T ss_pred ------cCCcCHHHHHHHHHHHccCch
Confidence 146899999999999887653
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-06 Score=86.42 Aligned_cols=180 Identities=15% Similarity=0.069 Sum_probs=110.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CC-eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GA-NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVD 532 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~-~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid 532 (702)
.....+||+||+|+||++.++.++..+ +. ++..+.. -+ ...++.+++.+. -....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 345678999999999999999998865 32 2222211 11 123455655553 2457899999999
Q ss_pred h-hhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-----CCccCccccCCCccceEEEcCCCCHHHHHHHH
Q 045279 533 A-LTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-----PDVMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606 (702)
Q Consensus 533 ~-l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-----~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il 606 (702)
. +. ....+.|+..++.... ..++|+++++. ...+-+++.+ |+ .++.|.+++.++....+
T Consensus 87 ~kl~-----------~~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPN-----------AAINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCC-----------TTHHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCC-----------hHHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 8 76 4567788888875432 33444444331 2356667766 77 58899999999999999
Q ss_pred HHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 607 EALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 607 ~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+..+++.++.-+ ..++.++ ..+|+|++.+.++.-..++-. . ...|+.+++...+....
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~------~~~~gdl~~~~~elekl~l~~--~---------~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLC------YCYEGNLLALAQALERLSLLW--P---------DGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHH------HSSTTCHHHHHHHHHHHHHHC--T---------TCEECHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCHHHHHHHH------HHhchHHHHHHHHHHHHHHhc--C---------CCCCCHHHHHHHHhhhh
Confidence 998887765433 2344555 234556665555443332210 0 01467777666655543
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=79.59 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
++..+++|+||||||||++|.++|+....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999997644
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.03 E-value=8.4e-06 Score=81.42 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
++.++++|+||||||||++|.+||+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999997643
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=97.87 E-value=7.2e-06 Score=66.70 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCCh
Q 045279 312 NARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLP 391 (702)
Q Consensus 312 ~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (702)
++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~---------------------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---------------------------- 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 4688999999999888778899999999999999999999999999887751
Q ss_pred hhhhhhcccHhHHHHHHhccC
Q 045279 392 EEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 392 ~~~~~~~i~~~d~~~~l~~~~ 412 (702)
...|+.+||..++..+.
T Consensus 53 ----~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 53 ----RYVILQSDLEEAYATQV 69 (82)
T ss_dssp ----CSEECHHHHHHHHHTTC
T ss_pred ----cCCcCHHHHHHHHHHHH
Confidence 13688999999998764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.8e-05 Score=71.28 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.+.|+||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 488999999999999999999886443
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.8e-05 Score=79.97 Aligned_cols=156 Identities=16% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---C-CeEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG---V-PFYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~---~-~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~ 228 (702)
....+||+||+|+||++.++.+++.+. . ++..+.. .+. ..+..+++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DPN--TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CTT--CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cCC--CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 346799999999999999999988652 1 2111111 011 22344444433 34567999999987
Q ss_pred -hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC------CCCCccccCCCCcc
Q 045279 229 -IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP------DAVDPALRRPGRFD 301 (702)
Q Consensus 229 -l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~------~~ld~al~r~~Rf~ 301 (702)
+... ..+.|+..+++. +.++++|.+++.+ ..+.+++.+ |.
T Consensus 88 kl~~~-----------~~~aLl~~le~p-------------------~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~- 134 (343)
T 1jr3_D 88 GPNAA-----------INEQLLTLTGLL-------------------HDDLLLIVRGNKLSKAQENAAWFTALAN--RS- 134 (343)
T ss_dssp CCCTT-----------HHHHHHHHHTTC-------------------BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-
T ss_pred CCChH-----------HHHHHHHHHhcC-------------------CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-
Confidence 6432 234567777642 2234444444443 346677888 87
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.++.|..++..+....+...++..+...+.+ +..++..+.| +.+++.+.++..
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 135 VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 6799999999999999988887766544433 4456655544 666665555544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=77.77 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc---------------------------------c
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN---------------------------------K 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---------------------------------~ 502 (702)
|+.++..++|+||||+|||++++.++... +..++.+....... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 45566678999999999999999998654 44444443221100 0
Q ss_pred Cc---CchHHHHHHHHHHHHhCCCe--EEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 503 YV---GESELAVRTLFSRARTCSPC--ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 503 ~~---g~~~~~~~~~f~~a~~~~~~--vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|. .......+.+...+....|. +|+|||...+... ......+++..|..... ..++.||++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~----d~~~~~~~~~~l~~~~~----~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD----KPAMARKISYYLKRVLN----KWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS----CGGGHHHHHHHHHHHHH----HTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC----CHHHHHHHHHHHHHHHH----hCCCeEEEEeccC
Confidence 00 01122233344444455788 9999999987532 11122344444333222 2346677777765
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.82 E-value=4.5e-05 Score=75.69 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHH--h-------CCeEEEEeccccccc--------CcC---------------c
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANE--A-------GANFIHIKGPELLNK--------YVG---------------E 506 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~--~-------~~~~~~i~~~~l~~~--------~~g---------------~ 506 (702)
|++++.-++|+||||+|||++++.++.. + +...+.++..+.... .+| .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677899999999999999999985 2 456777765541100 001 0
Q ss_pred hHHH----HHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 507 SELA----VRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 507 ~~~~----~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+... +..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22233444456899999999988764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.1e-05 Score=73.44 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=32.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
|+.++.-++++||||+|||++++.++...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666777899999999999999999886677777777554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.6e-05 Score=77.83 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|++++.-++++||||+|||+++..++..+ +..++.++....... .....+..+..+-..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666678999999999999999998764 566777776543221 01112222322222334
Q ss_pred hCCCeEEEEeCcchhhcc-c--C--CCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 520 TCSPCILFFDEVDALTTK-R--G--KEG-GWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~-r--~--~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
...+.+++||.+..+.+. . + .+. -....+.+.+++..|.......++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467899999998888751 1 1 111 112345566666666555444555565544
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00032 Score=79.41 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=94.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH-------hCCCeEEEechh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE-------TGVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~-------l~~~~~~i~~~~ 193 (702)
.....++|.+..+++|.+.+.. .......++|+||+|+|||+||+.++.. +...++.++.+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 3557799999999999987732 1123456999999999999999988642 222344444322
Q ss_pred h-----hcc----------------cccccHHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 194 V-----VSG----------------VSGASEENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 194 l-----~~~----------------~~g~~~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
. ... ........+...+...... .|.+|+||+++... .+
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----------------~l- 251 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----------------VL- 251 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----------------HH-
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----------------HH-
Confidence 1 000 0011112223333333333 67899999996311 11
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEE-eCCCCHHHHHHHHHHhhcCcccCC
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIV-LGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~-~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
+.+ +....||.||....... .+. +.. ..+. +...+.++-.++|...........
T Consensus 252 --~~l-------------------~~~~~ilvTsR~~~~~~-~~~--~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~ 306 (591)
T 1z6t_A 252 --KAF-------------------DSQCQILLTTRDKSVTD-SVM--GPK-YVVPVESSLGKEKGLEILSLFVNMKKADL 306 (591)
T ss_dssp --HTT-------------------CSSCEEEEEESCGGGGT-TCC--SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGS
T ss_pred --HHh-------------------cCCCeEEEECCCcHHHH-hcC--CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccc
Confidence 111 11246666776533111 111 122 2222 246788999999987765422122
Q ss_pred cccHHHHHhhCCCCCH
Q 045279 330 SFDLVKIARSTPGFVG 345 (702)
Q Consensus 330 ~~~~~~la~~t~g~~~ 345 (702)
......+++.+.|...
T Consensus 307 ~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPL 322 (591)
T ss_dssp CTHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHhCCCcH
Confidence 3346678888887654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.70 E-value=5.1e-05 Score=79.72 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=50.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC------------chHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG------------ESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g------------~~~~~~~~~f~~a~ 519 (702)
|++++.-++++||||+|||++|..++... +..++.++...-.... .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666778999999999999999888654 5566666654322110 11 11222222222333
Q ss_pred hCCCeEEEEeCcchhhc
Q 045279 520 TCSPCILFFDEVDALTT 536 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~ 536 (702)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55799999999999874
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=77.39 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=67.0
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC-----------chHHHHHHHHHH-HH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG-----------ESELAVRTLFSR-AR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~-a~ 519 (702)
|++++.-++++||||+|||++|..++..+ +.+++.++...-.... .| .+...+...+.. ++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667778999999999999999887754 5677777654422210 00 111222223322 33
Q ss_pred hCCCeEEEEeCcchhhcccCCCC--ch----HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 520 TCSPCILFFDEVDALTTKRGKEG--GW----VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~--~~----~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...+++|+||.+..+.+.....+ +. ...+.+.+++..|.......++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 45789999999999885321110 10 12245566666665444445566665543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.6e-05 Score=73.73 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|+.++.-+.|+||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55666678999999999999999999854
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=70.22 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEe
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKIS 190 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~ 190 (702)
|++++..++|+||||+|||||++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56777889999999999999999998654 44555544
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=68.74 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=31.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..|+|+|+||+||||+++.|++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 469999999999999999999999988887765543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-05 Score=73.16 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=37.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC--------cCc-----hHHHHHHHHHHHHhCCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY--------VGE-----SELAVRTLFSRARTCSPCILFF 528 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~--------~g~-----~~~~~~~~f~~a~~~~~~vl~i 528 (702)
-.+++||+|+|||+++..++..+ +..++.+.... -.+| .|. .......+++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 46899999999999986665543 55554443220 0010 000 0001223333332 25689999
Q ss_pred eCcchhh
Q 045279 529 DEVDALT 535 (702)
Q Consensus 529 DEid~l~ 535 (702)
||+..+.
T Consensus 83 DE~Q~~~ 89 (184)
T 2orw_A 83 DEVQFFN 89 (184)
T ss_dssp CCGGGSC
T ss_pred ECcccCC
Confidence 9999875
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00029 Score=68.47 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||||+..++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5778888999999999999999999885566777776543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=75.96 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=62.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-cccc---------cCcCchHHHHHHHHHHHHhCCCeEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELLN---------KYVGESELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~~---------~~~g~~~~~~~~~f~~a~~~~~~vl 526 (702)
.+...+++.||+|+||||++++++..+ +..++.+... ++.- ..++.....+...+..|....|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 344568899999999999999998865 3444443321 1110 0112112234567888888999999
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
++||.-. .+....++.... .+..||++++..+.+
T Consensus 201 llDEp~d-------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRD-------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCS-------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred ecCCCCC-------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 9999841 334444444432 233578888887655
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00028 Score=69.86 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH--h-------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE--T-------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~--l-------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||||++.++.. + +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5778888999999999999999999984 3 34566666544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=77.14 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=65.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC-----------chHHHHHHHHHH-HH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG-----------ESELAVRTLFSR-AR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~-a~ 519 (702)
|++++.-++++||||+|||++|..+|..+ +.+++.++........ .| .+...+..++.. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56677778999999999999999888754 5677777764322110 00 112223333332 23
Q ss_pred hCCCeEEEEeCcchhhcccC--CCCch----HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 520 TCSPCILFFDEVDALTTKRG--KEGGW----VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~--~~~~~----~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...+.+|+||.+..+..... ...++ ...+.+.+++..|.......++.||++..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 46789999999998874221 00000 11234455555554333334556665543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00024 Score=71.35 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=46.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-ccc-c--------cCcCchHHHHHHHHHHHHhCCCeE
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELL-N--------KYVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~-~--------~~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
..++.-++++||+|+||||++++++... ...++....+ ++. . ..+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4556668999999999999999999865 2233222110 010 0 011111123466777777779999
Q ss_pred EEEeCcc
Q 045279 526 LFFDEVD 532 (702)
Q Consensus 526 l~iDEid 532 (702)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999974
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=75.06 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccccc--------CcC----------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNK--------YVG---------------- 505 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~--------~~g---------------- 505 (702)
|++++.-++++||||+|||++|..+|... +..++.++....+.. ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56667778999999999999999998862 456777766542110 000
Q ss_pred chH---HHHHHHHHHHHh--CCCeEEEEeCcchhhcccCCCCchHH--HHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 506 ESE---LAVRTLFSRART--CSPCILFFDEVDALTTKRGKEGGWVV--ERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 506 ~~~---~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~--~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
..+ ..+..+...+.. ..+.+|+||.+..+....-.+.+... ...+.+++..|.......++.||+++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 112222333444 67899999999988743211101111 1234555554444333445566655543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.6e-05 Score=70.88 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.8
Q ss_pred CCcceEEEcCCCCChhHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+.-+.|+||+|+||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445578999999999999993
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=76.34 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=66.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccccc---------cC------------cC---
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLN---------KY------------VG--- 505 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~---------~~------------~g--- 505 (702)
|++++.-++++||||+|||++|..+|... +..++.++....+. .+ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56667778999999999999999998864 45677777654210 00 00
Q ss_pred chHH---HHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCch--HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 506 ESEL---AVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGW--VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 506 ~~~~---~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~--~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
..+. .+..+...++. ..+.+|+||.+..+......+.+. .....+.+++..|.......++.||++..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 1111 12233334444 678999999999987432111111 11224555555554443344555665543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=77.46 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444557899999999999999999855
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=6.9e-05 Score=72.10 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=29.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.+.++..++|+|||||||||+++.|++.++.+++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345667899999999999999999999999887543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00028 Score=73.88 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc---------------cccccHHHHHHHHHH-HH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG---------------VSGASEENIRDLFSK-AY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~---------------~~g~~~~~~~~~f~~-a~ 214 (702)
|++++.-++|+||||+|||||+..++..+ +..+++++....... ........+...+.. ..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 67788899999999999999999998764 566777776542110 001111122222222 22
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 36788999999987764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00023 Score=74.86 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=32.3
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccc
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPE 498 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~ 498 (702)
.|++++.-+.|+||||+|||++++.++... +..++.++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 466677778999999999999999999876 24557776544
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=75.84 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444557899999999999999999855
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0012 Score=81.52 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---C----CCeEEEech
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---G----VPFYKISAT 192 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~----~~~~~i~~~ 192 (702)
+.....++|.+..+++|.+.+... -....-|.|+|+.|+|||+||+.+++.. . ..++.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 335567999999999999877321 1234568999999999999999887652 2 223344433
Q ss_pred hhhc------------c---------cccccHHHHHHHHHHHHhhC--CceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 193 EVVS------------G---------VSGASEENIRDLFSKAYRTA--PSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 193 ~l~~------------~---------~~g~~~~~~~~~f~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
.... . ........+...+....... +.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 00111223333333333333 7899999996321
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC-CCHHHHHHHHHHhhcCcccC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV-PDENARVQILSVLTRNLRVE 328 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~-p~~~er~~Il~~~~~~~~~~ 328 (702)
.+..+ .++ ..||.||....-..... .....+.++. .+.++-.++|..........
T Consensus 250 -~~~~~------------------~~~-~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~ 305 (1249)
T 3sfz_A 250 -VLKAF------------------DNQ-CQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKED 305 (1249)
T ss_dssp -HHTTT------------------CSS-CEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT
T ss_pred -HHHhh------------------cCC-CEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhh
Confidence 11111 122 46777776543221111 1124467775 88899999998766433322
Q ss_pred CcccHHHHHhhCCCCCH
Q 045279 329 GSFDLVKIARSTPGFVG 345 (702)
Q Consensus 329 ~~~~~~~la~~t~g~~~ 345 (702)
.......+++.+.|...
T Consensus 306 ~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp CCTHHHHHHHHTTTCHH
T ss_pred CcHHHHHHHHHhCCCHH
Confidence 23346678888888654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00039 Score=68.14 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|++++.-+.|+||+|+|||||++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788889999999999999999999854
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=76.61 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|+|||||+++++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3445557899999999999999999754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00022 Score=72.17 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344557899999999999999999754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00059 Score=71.56 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----ccc-----------ccHHHHHHHHH-HHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----VSG-----------ASEENIRDLFS-KAY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----~~g-----------~~~~~~~~~f~-~a~ 214 (702)
|++++.-++|+||||+|||+|+..++... +..+++++...-... ..| .....+..+.. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 67788889999999999999999987654 556666665432111 001 01122222222 222
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999998874
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.7e-05 Score=69.98 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
+..|+|+|||||||||+++.||+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999887643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00027 Score=66.31 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
.-++|.|+||+||||+++.|+..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4589999999999999999999999888876543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=74.57 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444557899999999999999999855
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=72.38 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=52.8
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC--ccCccccCCCccceEEEcCCCCHH
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
+-+|+|||++.+...-+ ......+..+. ......++.+|++|.+|. .++..+.. -|...|.+...+..
T Consensus 344 ~ivvVIDE~~~L~~~~~----~~~~~~L~~Ia----r~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~ 413 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG----KKVEELIARIA----QKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEEESCCTTHHHHTC----HHHHHHHHHHH----HHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHH
T ss_pred cEEEEEeCHHHHhhhhh----HHHHHHHHHHH----HHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHH
Confidence 35899999998874321 11223333333 334567889999999987 78877766 68889999999988
Q ss_pred HHHHHHH
Q 045279 601 ERGLILE 607 (702)
Q Consensus 601 ~r~~il~ 607 (702)
+...|+.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8777774
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00055 Score=69.75 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc-------------Cc---CchHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK-------------YV---GESELAVRTLFSR 517 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~-------------~~---g~~~~~~~~~f~~ 517 (702)
|++++ -++++||||+|||+++-.++... +..++.++..+-... ++ ...+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 57899999999999988666543 567777776543221 00 1122220122222
Q ss_pred ---HHhCCCeEEEEeCcchhhcccC--CCCc------hHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 518 ---ARTCSPCILFFDEVDALTTKRG--KEGG------WVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 518 ---a~~~~~~vl~iDEid~l~~~r~--~~~~------~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
++...|.+|+||=+..+.+... ...+ ....+.+++.|..|.......++.||++.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 2456799999999999974321 1101 02345666666665544444555555443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00032 Score=74.87 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccccc--------CcCc---------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNK--------YVGE--------------- 506 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~--------~~g~--------------- 506 (702)
|+.++.-++|+||||+|||++++.++-.. +...+.++..+.... .+|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677778999999999999999776432 234677765542110 0110
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc--hHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 507 -SE---LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 507 -~~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
.+ ..+..+...+....|.+|+||++-.+....-.+.+ ....+.+..++..|.......++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01 11222333344567999999998887643211111 1112333444444444433445667777765
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00024 Score=74.50 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 444557899999999999999999854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00075 Score=67.48 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
...+..++|+|+||+||||+++.|++.++..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3455779999999999999999999999876777777665
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00051 Score=72.82 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-ccc-cc---CcCc-----hHHHHHHHHHHHHh
Q 045279 455 YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELL-NK---YVGE-----SELAVRTLFSRART 520 (702)
Q Consensus 455 ~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~-~~---~~g~-----~~~~~~~~f~~a~~ 520 (702)
+.++...++..++++||+|+||||++++++..+ ...++.+... ++. .. |+.+ ....++..+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 334445566678999999999999999999865 2344333321 110 00 1111 11233556677777
Q ss_pred CCCeEEEEeCcc
Q 045279 521 CSPCILFFDEVD 532 (702)
Q Consensus 521 ~~~~vl~iDEid 532 (702)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 799999999984
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00049 Score=68.86 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+|||||+++++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455557899999999999999999854
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=69.03 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-----c----------ccccHHHHHHHHHHH-H
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-----V----------SGASEENIRDLFSKA-Y 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-----~----------~g~~~~~~~~~f~~a-~ 214 (702)
|++++..++|+||||+|||+||..++... +.++++++...-... + .......+..++... .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57788889999999999999999987654 567777776321110 0 001122333333332 2
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45788999999988874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00023 Score=74.55 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344557899999999999999999855
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00026 Score=71.30 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445557899999999999999999754
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00062 Score=71.75 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc----cc-----------ccHHHHHHHHHHHH-
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV----SG-----------ASEENIRDLFSKAY- 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~a~- 214 (702)
|++++.-++|+||||+|||+||..++... +.++++++...-.... .| .....+...+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 67788889999999999999999887654 5677777665321110 00 11122233333322
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 35688999999998874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00061 Score=71.46 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||+|+..+|... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67888899999999999999999998862 45666776654
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0009 Score=69.57 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||+++..++... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67788899999999999999999998764 45667776654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0002 Score=68.19 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
..+..|+|+|+||+||||+++.|++.++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 445679999999999999999999999877654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00059 Score=68.95 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+|||||+++|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=68.61 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+.++..++|+||||+||||+++.|++.++...+.++..++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35567789999999999999999999987777777776554
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00044 Score=65.82 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46899999999999999999876
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00068 Score=66.11 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=43.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc-------ccccCcCch-----HHHHHHHHHHHHh----CCCeE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE-------LLNKYVGES-----ELAVRTLFSRART----CSPCI 525 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~-------l~~~~~g~~-----~~~~~~~f~~a~~----~~~~v 525 (702)
-++++||+|+|||+++..++..+ +..++.++... +.+. .|.. ......+++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 35778999999999988887765 55555553221 1121 1210 0112345555554 35889
Q ss_pred EEEeCcchhh
Q 045279 526 LFFDEVDALT 535 (702)
Q Consensus 526 l~iDEid~l~ 535 (702)
|+|||+..+.
T Consensus 93 ViIDEaQ~l~ 102 (223)
T 2b8t_A 93 IGIDEVQFFD 102 (223)
T ss_dssp EEECSGGGSC
T ss_pred EEEecCccCc
Confidence 9999999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=72.35 Aligned_cols=72 Identities=22% Similarity=0.382 Sum_probs=45.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechhh---hcc--------cccccHHHHHHHHHHHHhhCCce
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISATEV---VSG--------VSGASEENIRDLFSKAYRTAPSI 220 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~~~l---~~~--------~~g~~~~~~~~~f~~a~~~~p~i 220 (702)
+.++..++|+||+|+||||+++++++.+.. --+.+....+ ... ..|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 456678999999999999999999887631 1122222111 000 01111123456667777789999
Q ss_pred EEechh
Q 045279 221 VFIDEI 226 (702)
Q Consensus 221 l~iDEi 226 (702)
|++||+
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999998
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00032 Score=74.13 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+|||||||.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344457899999999999999999865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=74.70 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444557899999999999999999854
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00068 Score=68.82 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|+..+.-++|+||||+|||+++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555668999999999999999998643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00058 Score=69.68 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+..++|.||||+||||+++.|+..++..++.+++..+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 34567999999999999999999999865677787755543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00023 Score=67.12 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
..+..|+|+|+||+||||+++.|++.++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998776543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.002 Score=70.64 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=50.9
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC--ccCccccCCCccceEEEcCCCCHHH
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~p~~~~ 601 (702)
-+|+|||+..+.... ..-+..++..+-.......+.+|++|.++. .++..+.. -|...|.|...+..+
T Consensus 299 ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMTV--------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHHH--------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhhh--------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 389999998776311 112223333332223445788889999987 67777766 788899999999988
Q ss_pred HHHHHHH
Q 045279 602 RGLILEA 608 (702)
Q Consensus 602 r~~il~~ 608 (702)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8877753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=66.09 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=27.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
.|+|.||||+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998876544
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00044 Score=68.35 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+||||++++++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455568899999999999999999744
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=69.97 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=49.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc-------------------ccCcC-chHHHHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL-------------------NKYVG-ESELAVRTLFSRA 518 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~-------------------~~~~g-~~~~~~~~~f~~a 518 (702)
+|.-++++|++|+||||++..||..+ +..+..+.+..+. ..+.+ .....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765 5566555543221 11112 2333456677777
Q ss_pred HhCCCeEEEEeCcchh
Q 045279 519 RTCSPCILFFDEVDAL 534 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l 534 (702)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987544
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=73.09 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 444557899999999999999999754
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0027 Score=71.09 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
+|.+..+++|.+.+... +-.....|.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999999877321 112346799999999999999999997
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=67.71 Aligned_cols=33 Identities=39% Similarity=0.591 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH-hCCCeEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANE-TGVPFYK 188 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~-l~~~~~~ 188 (702)
..+..|+|+|+|||||||+++.|++. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34567999999999999999999999 6755543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=68.53 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+...++|+||||+||||+++.||..++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456789999999999999999999999887654
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0031 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..++++.|+|||||||++-.+|..+ |..+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4579999999999999998888775 556554444
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=65.98 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+|+|.|+|||||||+++.||+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 569999999999999999999999988864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=64.05 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
|++++..++|+||||+|||+++..++... +..+++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67788899999999999999988776543 445555544
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00022 Score=66.87 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.++|+|||||||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999877653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0002 Score=70.98 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.+ .-+.|.||+|+||||++++++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 667899999999999999999865
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0014 Score=67.19 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-------------------cccccH-HHHHHHHH
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-------------------VSGASE-ENIRDLFS 211 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-------------------~~g~~~-~~~~~~f~ 211 (702)
..++.-++|+||+|+||||++..||..+ +..+..+++...... ..+... ......+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3566789999999999999999998876 445555543221100 011111 12233455
Q ss_pred HHHhhCCceEEechhh
Q 045279 212 KAYRTAPSIVFIDEID 227 (702)
Q Consensus 212 ~a~~~~p~il~iDEid 227 (702)
.+....+.+++||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566788899999873
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00028 Score=65.91 Aligned_cols=29 Identities=34% Similarity=0.750 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
..++|+|||||||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45999999999999999999999986543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0017 Score=64.10 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
|+.++.-++++||||+|||+++..++... +.+++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56667778999999999999988776543 445555443
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0025 Score=69.64 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.+++.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998866
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0008 Score=70.64 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=32.9
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEechh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISATE 193 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~~~ 193 (702)
.|++++.-+.|+||||+|||||++.++.... ..+++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3678888999999999999999999998762 3456666543
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00061 Score=74.55 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCCccccc-CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 120 GPRFQDLG-GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 120 ~~~~~~i~-G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+|+++- ++..++..+...+.. ...+++|.|+||||||+++.+++..+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34788875 566666665544411 12379999999999999999998776
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00035 Score=66.07 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=28.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..++|+||||+||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45789999999999999999999999887654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00029 Score=66.58 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=26.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+|||||||+++.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 49999999999999999999999988754
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=66.33 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=31.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH---hCCCeEEEechhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATEVVS 196 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~---l~~~~~~i~~~~l~~ 196 (702)
+..|+|+|+||+||||+++.|+.. .+.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 356999999999999999999998 677777666665543
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00023 Score=79.90 Aligned_cols=98 Identities=26% Similarity=0.347 Sum_probs=54.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cCchHHHHHHHHHHH---------HhCCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VGESELAVRTLFSRA---------RTCSPCIL 526 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g~~~~~~~~~f~~a---------~~~~~~vl 526 (702)
...+++.||||||||+++..++..+ +..++.+..+.-.... .+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3568899999999999999998754 5555544322111000 000000111111100 11245799
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+|||+..+. ...+..|+..+. ...++++++=.+.
T Consensus 284 IIDEasml~-----------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 284 IVDEVSMMG-----------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp EECCGGGCC-----------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EEcCccCCC-----------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 999999887 566677765543 3455666655443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00015 Score=76.19 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=44.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec-hhhh---------cccccccHHHHHHHHHHHHhhCCceEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISA-TEVV---------SGVSGASEENIRDLFSKAYRTAPSIVF 222 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~-~~l~---------~~~~g~~~~~~~~~f~~a~~~~p~il~ 222 (702)
++..++++||+|+||||+++++++.++ ..++.+.- .++. ....+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 445799999999999999999988763 22222211 0110 001111112345577788888999999
Q ss_pred echh
Q 045279 223 IDEI 226 (702)
Q Consensus 223 iDEi 226 (702)
+||+
T Consensus 202 lDEp 205 (356)
T 3jvv_A 202 VGEM 205 (356)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9999
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00024 Score=73.76 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
+..+.+.+.+...+...+.. ....+++|+||||+||||++++||+.++.+|+.++
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~ 56 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFL 56 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeec
Confidence 45566666666665432221 12246999999999999999999999987775543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00064 Score=68.28 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|+|||||+++++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3445557899999999999999999865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00074 Score=69.27 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|+||+|+|||||+++++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4556668999999999999999999754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=66.67 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
.-++++||+|+||||++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 458899999999999986665543 4444443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00075 Score=66.12 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+|||||+++++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344557899999999999999999754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00027 Score=74.13 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444557899999999999999999854
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0014 Score=67.17 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.9
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.++.-++|.||||+|||++++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466777778999999999999999998865
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00042 Score=66.56 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.+..|+|+|+||+||||+++.|++.++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999998876543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=67.34 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcc-------------c--ccccHHHH-HHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSG-------------V--SGASEENI-RDLFSK 212 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~-------------~--~g~~~~~~-~~~f~~ 212 (702)
|++++ -++++||||+|||+|+..++... +..+++++...-... + .......+ ..+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56776 69999999999999977665433 556777776532110 0 01111222 222222
Q ss_pred H---HhhCCceEEechhhHhhh
Q 045279 213 A---YRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 213 a---~~~~p~il~iDEid~l~~ 231 (702)
. ....|.+++||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2 345789999999998874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0025 Score=63.98 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.-+.|.||+|+||||++++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5557899999999999999999764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00068 Score=70.60 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccc-----c---CcCchHHHHHHHHHHHHhCCCeEEEEeC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLN-----K---YVGESELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
.++..++++||+|+||||++++++.... ...+.+....... . ++.......+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3456789999999999999999998763 2345555432111 1 2211234556788888888999999999
Q ss_pred cch
Q 045279 531 VDA 533 (702)
Q Consensus 531 id~ 533 (702)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00044 Score=69.21 Aligned_cols=33 Identities=42% Similarity=0.628 Sum_probs=29.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
.++|+|||||||||+|+.||+.++..++..+.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 489999999999999999999999888766553
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=65.40 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..+.-++|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 445678999999999999999999999887665
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0028 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|+||+|+||||++++++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668899999999999999999854
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=69.08 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|+.++.-++|+||||+|||||++.++-.. +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 67788899999999999999999776332 23366666543
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=68.14 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=31.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
..++|+||+|||||++++.||+.++..++.++.-.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 4699999999999999999999999888777655443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=64.75 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445557899999999999999999754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=65.16 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++.-+.|.||+|+||||++++++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44457899999999999999999754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0059 Score=60.28 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~ 191 (702)
|++++.-++|+|+||+|||+||..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6788889999999999999999876533 3566666554
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=66.05 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeE--------EE--------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANF--------IH-------------------------- 493 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~--------~~-------------------------- 493 (702)
+.+.++.-+.|.||+|+||||++++++... +.++ +.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Q ss_pred ----------------Eecc--cccccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHHH
Q 045279 494 ----------------IKGP--ELLNKYVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLNQ 552 (702)
Q Consensus 494 ----------------i~~~--~l~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ 552 (702)
+... ++..++++. ..+.-|-.+.+|....|.+|++|| .-.|. ......
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD-----------~~~~~~ 176 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD-----------REGKTD 176 (266)
T ss_dssp CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC-----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCC-----------HHHHHH
Q ss_pred HHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 553 LLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 553 ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
++..+...... +..||++|++++.+.. -+|+++.+
T Consensus 177 l~~~l~~l~~~-g~tii~vtHd~~~~~~------~~d~v~~l 211 (266)
T 2yz2_A 177 LLRIVEKWKTL-GKTVILISHDIETVIN------HVDRVVVL 211 (266)
T ss_dssp HHHHHHHHHHT-TCEEEEECSCCTTTGG------GCSEEEEE
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHH------hCCEEEEE
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=65.37 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..|+|+|+|||||||+++.|++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356999999999999999999999986553
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=66.93 Aligned_cols=39 Identities=38% Similarity=0.574 Sum_probs=31.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
..+.-++|.||||+||||+++.++..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345668999999999999999999988555667776444
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0074 Score=68.11 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHH
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
..++|-+.....+.+.+.. .....+-++++||+|+|||++|+.++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4567777777766654321 012345688999999999999998864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00077 Score=70.01 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=63.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------------C----CeEEEEeccccc--c-------c--------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------------G----ANFIHIKGPELL--N-------K-------- 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------------~----~~~~~i~~~~l~--~-------~-------- 502 (702)
|++++.-++++||||+|||++|..+|... + .+++.++...-+ . .
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56666778999999999999999988752 2 466677655421 0 0
Q ss_pred ----Cc---CchHH---HHHHHHHHHHh-CCCeEEEEeCcchhhcccCCC-Cc-hHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 503 ----YV---GESEL---AVRTLFSRART-CSPCILFFDEVDALTTKRGKE-GG-WVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 503 ----~~---g~~~~---~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~-~~-~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
++ ...+. .+..+...+.. ..+.+|+||.+..+......+ +. ......+.+++..|.......++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 01111 12223333444 568899999999887432111 11 11122445555555444334455566
Q ss_pred Eec
Q 045279 570 GAT 572 (702)
Q Consensus 570 ~at 572 (702)
++.
T Consensus 254 ~~n 256 (322)
T 2i1q_A 254 VTN 256 (322)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00041 Score=66.10 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|.|+|||||||+++.|++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999877644
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00071 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHA 177 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~ 177 (702)
.+.++.-+.|+||+|+|||||+++
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 345677899999999999999994
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00057 Score=66.68 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=27.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+||+||||+++.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4579999999999999999999999876543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00076 Score=63.41 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=32.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
++..+.|+|++|+||||+++.|+..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45679999999999999999999988 888888775544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00029 Score=74.76 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=47.6
Q ss_pred ccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEech-hh-hcc---cccc-----cHHHHHHHHHHHHh
Q 045279 150 PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISAT-EV-VSG---VSGA-----SEENIRDLFSKAYR 215 (702)
Q Consensus 150 ~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~-~l-~~~---~~g~-----~~~~~~~~f~~a~~ 215 (702)
+..+.+.++..++|+||+|+||||++++|++.+. ..++.+... .+ ... +..+ ....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344456777899999999999999999988763 223222210 00 000 0111 11123455666667
Q ss_pred hCCceEEechh
Q 045279 216 TAPSIVFIDEI 226 (702)
Q Consensus 216 ~~p~il~iDEi 226 (702)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999999
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0098 Score=57.60 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=25.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
..+++.|+||||||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999998888765 656554443
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00045 Score=65.66 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=28.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|+|+|||||||+++.|++.++.++ ++..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHH
Confidence 35699999999999999999999998765 444444
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=65.63 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
..+..++|.||||+||||+++.|+..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999866677776655
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0041 Score=66.81 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc---------
Q 045279 129 MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS--------- 196 (702)
Q Consensus 129 ~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~--------- 196 (702)
.+.+++.+.+.+...+..+...... -.++.-++++|++|+||||++..||..+ +..+..+++.....
T Consensus 72 ~~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~ 150 (443)
T 3dm5_A 72 KEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL 150 (443)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHH
Confidence 3445555555554433321111111 1246789999999999999999998766 55666555432211
Q ss_pred ----------ccccc-cHHHHHHHHHHHHhhCCceEEechh
Q 045279 197 ----------GVSGA-SEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 197 ----------~~~g~-~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
...+. ....+...+..+....+.+++||..
T Consensus 151 ~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 151 LDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTA 191 (443)
T ss_dssp HGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 01111 2223456667776666889999977
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=65.33 Aligned_cols=31 Identities=35% Similarity=0.664 Sum_probs=27.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+||+||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3569999999999999999999999876643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=63.36 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=26.2
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
+..+.|+||||+||||+++.+|..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999987654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00045 Score=64.38 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+|||||||+++.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 49999999999999999999999877653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00068 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
++..++|+||||+||||+++.|++.++..+ ++...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 346799999999999999999999987554 454443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00048 Score=64.09 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+||||+||||+++.| ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 888877654
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00086 Score=65.42 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=43.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh-------hhccccccc-----HHHHHHHHHHHHh----hCC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE-------VVSGVSGAS-----EENIRDLFSKAYR----TAP 218 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~-------l~~~~~g~~-----~~~~~~~f~~a~~----~~p 218 (702)
+.-++++||+|+||||++..++.++ +..++.+++.. +.+. .|-. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4568889999999999988887765 45555553222 1111 1110 0111345555543 347
Q ss_pred ceEEechhhHhh
Q 045279 219 SIVFIDEIDAIA 230 (702)
Q Consensus 219 ~il~iDEid~l~ 230 (702)
.+|+|||+..+.
T Consensus 91 dvViIDEaQ~l~ 102 (223)
T 2b8t_A 91 KVIGIDEVQFFD 102 (223)
T ss_dssp CEEEECSGGGSC
T ss_pred CEEEEecCccCc
Confidence 899999997754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00056 Score=64.75 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=27.7
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHH-hCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANE-AGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~-~~~~~~~i 494 (702)
.+..++|+|+|||||||+++.++.. ++.+++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456899999999999999999999 67766543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0022 Score=68.92 Aligned_cols=73 Identities=18% Similarity=0.072 Sum_probs=45.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc--------------c--cC---cC-chHHHHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL--------------N--KY---VG-ESELAVRTLFSRA 518 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~--------------~--~~---~g-~~~~~~~~~f~~a 518 (702)
++.-++++||+|+||||++..||..+ +..+..+.+..+. + .| .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35568899999999999999998765 5555555433111 0 01 11 1122233445555
Q ss_pred HhCCCeEEEEeCcchh
Q 045279 519 RTCSPCILFFDEVDAL 534 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l 534 (702)
....+.+++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999987543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.002 Score=68.41 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+||||||++++|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3455668899999999999999999743
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00043 Score=67.93 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 34679999999999999999999999866543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00072 Score=64.90 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.++..++|+||+|+||||+++.|++.++.. .++...+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 346679999999999999999999999654 4555444
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00096 Score=65.09 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHhCC-eE--------------------------------EE----Eeccccccc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEAGA-NF--------------------------------IH----IKGPELLNK 502 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~--------------------------------~~----i~~~~l~~~ 502 (702)
.+.+.-+.|.||+|+|||||+++++..... ++ .. +.-..+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAV 582 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~ 582 (702)
+.|.....+..+++. +.++++| +| .....++...+. ..+.||.+|+.++.+...+
T Consensus 93 ~yg~~~~~v~~~l~~-----G~illLD-LD--------------~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 93 YYGTSREAIEQVLAT-----GVDVFLD-ID--------------WQGAQQIRQKMP-----HARSIFILPPSKIELDRRL 147 (219)
T ss_dssp EEEEEHHHHHHHHTT-----TCEEEEE-CC--------------HHHHHHHHHHCT-----TCEEEEEECSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc-----CCeEEEE-EC--------------HHHHHHHHHHcc-----CCEEEEEECCCHHHHHHHH
Q ss_pred cCCC
Q 045279 583 LRPG 586 (702)
Q Consensus 583 ~r~g 586 (702)
+..|
T Consensus 148 ~~rG 151 (219)
T 1s96_A 148 RGRG 151 (219)
T ss_dssp HTTS
T ss_pred HHcC
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00069 Score=65.83 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
++.++-|+|.||||+||+|.|+.|++.++.+. ++..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 44556788999999999999999999997654 56666543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0045 Score=62.01 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhC-CeEEEEeccccccc----------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAG-ANFIHIKGPELLNK---------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-~~~~~i~~~~l~~~---------------------------------- 502 (702)
+.+.++.-+.|+||+|+|||||+++++.... .--+.++..++...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 120 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCC
Q ss_pred -------------------------------CcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchH
Q 045279 503 -------------------------------YVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWV 545 (702)
Q Consensus 503 -------------------------------~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~ 545 (702)
+... ..+..|-.+.+|....|.||++|| +|...
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~---------- 190 (260)
T 2ghi_A 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT---------- 190 (260)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH----------
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH----------
Q ss_pred HHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 546 VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 546 ~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
...+..++..+ ..+..||++|+ |..... ++|+++.+
T Consensus 191 -~~~i~~~l~~l-----~~~~tviivtH-----~~~~~~--~~d~i~~l 226 (260)
T 2ghi_A 191 -EYLFQKAVEDL-----RKNRTLIIIAH-----RLSTIS--SAESIILL 226 (260)
T ss_dssp -HHHHHHHHHHH-----TTTSEEEEECS-----SGGGST--TCSEEEEE
T ss_pred -HHHHHHHHHHh-----cCCCEEEEEcC-----CHHHHH--hCCEEEEE
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00094 Score=66.68 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344557899999999999999999865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00045 Score=65.60 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
+..+.-++|.||||+||||++++|+..++...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455668999999999999999999987777777776543
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00042 Score=67.55 Aligned_cols=30 Identities=30% Similarity=0.559 Sum_probs=26.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
..|+|.|+|||||||+++.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 469999999999999999999999876654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00063 Score=63.25 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
-++|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0028 Score=65.00 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=53.9
Q ss_pred chhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc------------
Q 045279 437 LRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN------------ 501 (702)
Q Consensus 437 ~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~------------ 501 (702)
+++.+.+.+...+.... -..+...++.-++++||+|+||||++..+|..+ +..+..+.+..+..
T Consensus 79 ~~~~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 79 ALESLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHH
Confidence 55555555555443221 001112345568899999999999999999865 44444444321110
Q ss_pred -------cCc-CchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 502 -------KYV-GESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 502 -------~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
... ++........+..+....|.+++||+.-.
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001 11112223345556667889999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0007 Score=63.66 Aligned_cols=33 Identities=39% Similarity=0.749 Sum_probs=28.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+..++|+|+||+|||++++.++..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999998877644
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00083 Score=66.55 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh--CCeEEEEeccccccc---------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELLNK--------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~~~--------------------------------- 502 (702)
+.+.++.-+.|.||+|+||||++++++... ..--+.++..++...
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Q ss_pred -----------------------------CcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHH
Q 045279 503 -----------------------------YVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 503 -----------------------------~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~ 550 (702)
+++. ..+..|-.+.+|....|.+|++|| ...|. ....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD-----------~~~~ 175 (240)
T 1ji0_A 107 YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA-----------PILV 175 (240)
T ss_dssp TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC-----------HHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC-----------HHHH
Q ss_pred HHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 551 NQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 551 ~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
..++..+..... .+..||++|+.++.+.. -+|+++.+
T Consensus 176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~------~~d~v~~l 212 (240)
T 1ji0_A 176 SEVFEVIQKINQ-EGTTILLVEQNALGALK------VAHYGYVL 212 (240)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHH------HCSEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHH------hCCEEEEE
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=72.85 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=89.2
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecccccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGPELLN 501 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~~l~~ 501 (702)
..++|.+...+.|.+.+... ....+-+.++|++|+|||+||+.++... ...++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 45778877777666644211 1233457899999999999999887642 12233444332100
Q ss_pred ---------------------cCcCchHHHHHHHHHHHHhC--CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 502 ---------------------KYVGESELAVRTLFSRARTC--SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 502 ---------------------~~~g~~~~~~~~~f~~a~~~--~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.........+...+...... .+.+|+||+++... .+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~ 252 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHT
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHH
Confidence 00111222233333333332 37899999988432 111
Q ss_pred CCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCC-CCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCC
Q 045279 559 GADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL-PTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633 (702)
Q Consensus 559 ~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~ 633 (702)
.+ ..+..||.||..+....... .....+.++. ++.++-.++|.................++ ..|.|.
T Consensus 253 ~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~--~~~~gl 320 (1249)
T 3sfz_A 253 AF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII--KECKGS 320 (1249)
T ss_dssp TT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH--HHTTTC
T ss_pred hh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH--HHhCCC
Confidence 12 22345666776554432211 2234677775 88888888888776443322233345555 345554
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0005 Score=64.72 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=23.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..|+|+|+|||||||+++.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356999999999999999999999998876
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00065 Score=62.98 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999987753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00059 Score=66.29 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|+||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998776543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0007 Score=63.39 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.4
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.||||+||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.001 Score=63.77 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
.++..+.|+||+|+||||+++.|++.+ +...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456779999999999999999999988 444446665544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00069 Score=68.71 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh--CCeEEEEeccccc---------ccCcCchHHHH---------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELL---------NKYVGESELAV--------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~---------~~~~g~~~~~~--------------- 511 (702)
+.+.++.-+.|.||+|+|||||+++++... ..--+.++..++. .+.+|...+..
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Q ss_pred -----------------------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCc
Q 045279 512 -----------------------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGG 543 (702)
Q Consensus 512 -----------------------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~ 543 (702)
|..+.+|....|.+|++|| ...|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD-------- 193 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD-------- 193 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC--------
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC--------
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEE--EEecCCCCccCccccCCCccceEEEc
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFV--IGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~v--I~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
......++..+...... +..| |++|++.+.+.. -+|+++.+
T Consensus 194 ---~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~------~~d~v~~l 236 (279)
T 2ihy_A 194 ---FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITA------NFSKILLL 236 (279)
T ss_dssp ---HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCT------TCCEEEEE
T ss_pred ---HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHH------hCCEEEEE
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00067 Score=64.28 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
..|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00068 Score=65.81 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|.||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999998776543
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00089 Score=65.98 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|.|+|||||||+++.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999876544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0055 Score=62.05 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|+.++.-++|+||||+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56778889999999999999999998654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0006 Score=65.13 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=28.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|+|+||+||||+++.|++.++.++ ++..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--i~~d~~ 46 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH--LSTGEL 46 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE--EcHHHH
Confidence 34699999999999999999999998655 444444
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0028 Score=63.14 Aligned_cols=106 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEeccccccc-------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELLNK------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~l~~~------------------------------- 502 (702)
+.+.++.-+.|.||+|+||||++++++.. ...--+.++..++...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Q ss_pred -----------------------------------CcCc---hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCC
Q 045279 503 -----------------------------------YVGE---SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGK 540 (702)
Q Consensus 503 -----------------------------------~~g~---~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~ 540 (702)
+++. ..+.-|-.+.+|....|.+|++|| +|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~----- 178 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----- 178 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHH-----
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH-----
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
...+..+|..+ ...+..||++|++++.+
T Consensus 179 ------~~~l~~~l~~l----~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 179 ------LKVVARGVNAM----RGPNFGALVITHYQRIL 206 (250)
T ss_dssp ------HHHHHHHHHHH----CSTTCEEEEECSSSGGG
T ss_pred ------HHHHHHHHHHH----HhcCCEEEEEecCHHHH
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00076 Score=67.78 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeE------------------------EE----------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANF------------------------IH---------- 493 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~------------------------~~---------- 493 (702)
+.+.++.-+.|.||+|+|||||+++++... +.++ +.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 106 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Q ss_pred ---------------------------------Eecccc-cccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhc
Q 045279 494 ---------------------------------IKGPEL-LNKYVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTT 536 (702)
Q Consensus 494 ---------------------------------i~~~~l-~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~ 536 (702)
+...++ ..+++++ ..+..|..+.+|....|.||++|| .-.|.
T Consensus 107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD- 185 (262)
T 1b0u_A 107 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD- 185 (262)
T ss_dssp TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSC-
T ss_pred CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC-
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
......++..+...... +..||++|+..+.+
T Consensus 186 ----------~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 186 ----------PELVGEVLRIMQQLAEE-GKTMVVVTHEMGFA 216 (262)
T ss_dssp ----------HHHHHHHHHHHHHHHHT-TCCEEEECSCHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00079 Score=62.52 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3689999999999999999999999987654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00061 Score=63.87 Aligned_cols=31 Identities=39% Similarity=0.645 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHH-HhCCCeEEEec
Q 045279 159 AGILLYGPPGCGKTKLAHAIAN-ETGVPFYKISA 191 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~-~l~~~~~~i~~ 191 (702)
..|+|.|+||+||||+++.|++ .++ +..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 4589999999999999999998 454 344443
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00072 Score=67.16 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
++..|+|.||||+||||+++.|++.++.+++ +..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHH
Confidence 4567999999999999999999999976654 444443
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=61.42 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCe-------EEEEecc-----------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GAN-------FIHIKGP----------------------- 497 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~-------~~~i~~~----------------------- 497 (702)
+.+.++.-+.|.||+|+||||++++++... +.+ +-.+...
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Q ss_pred ----------------cccccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHH
Q 045279 498 ----------------ELLNKYVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 498 ----------------~l~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++ .+++.. ..+..|-.+.+|....|.+|++|| +|... ...+..++.
T Consensus 110 ~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~-----------~~~l~~~l~ 177 (214)
T 1sgw_A 110 VNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS-----------KHKVLKSIL 177 (214)
T ss_dssp CCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT-----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH-----------HHHHHHHHH
Q ss_pred hhhCCCCCCcEEEEEecCCCCcc
Q 045279 556 ELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.+. ..+..||++|+.++.+
T Consensus 178 ~~~----~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 178 EIL----KEKGIVIISSREELSY 196 (214)
T ss_dssp HHH----HHHSEEEEEESSCCTT
T ss_pred HHH----hCCCEEEEEeCCHHHH
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=64.10 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=42.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHH---hCCeEEEEeccccccc---CcCchHHHHHH----HHHHHHhCCCeEEEEeC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANE---AGANFIHIKGPELLNK---YVGESELAVRT----LFSRARTCSPCILFFDE 530 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~---~~~~~~~i~~~~l~~~---~~g~~~~~~~~----~f~~a~~~~~~vl~iDE 530 (702)
+.-++|.|+||+||||+|+.|+.. .+.+++.++...+... |....+..++. ....+.. . ..+++|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~-~-~~vIiD~ 79 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALK-N-YWVIVDD 79 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHT-T-SEEEECS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-C-CEEEEeC
Confidence 345889999999999999999997 6888776665544332 22223333322 2223333 3 6778886
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=75.76 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=26.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
...++|.||||||||+++.+++..+ +.++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3679999999999999999997754 555555433
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=64.43 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=27.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
.++++||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999988887666666544
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00095 Score=62.98 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.++|.|+||+||||+++.|+..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887643
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=63.26 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~ 496 (702)
|++++.-++++|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5677777899999999999999876543 2555655543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00078 Score=63.86 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=26.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 3569999999999999999999999866543
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00085 Score=64.74 Aligned_cols=34 Identities=35% Similarity=0.671 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.++|.||||+||+|.|+.||+.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998665 5555554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.006 Score=62.29 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=41.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccc----------------cCcCchHHHHHHHHHHHHhC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLN----------------KYVGESELAVRTLFSRARTC 521 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~----------------~~~g~~~~~~~~~f~~a~~~ 521 (702)
.+..++|+||+|+||||++..+|..+ |..+..+.+..+.. .+.......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 35568899999999999999999755 44555555432110 01112223344444443 5
Q ss_pred CCeEEEEeC
Q 045279 522 SPCILFFDE 530 (702)
Q Consensus 522 ~~~vl~iDE 530 (702)
.+.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 688999993
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.006 Score=57.76 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=58.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEE---ecc------cccccC-----------cCc------hHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHI---KGP------ELLNKY-----------VGE------SELAVRTL 514 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i---~~~------~l~~~~-----------~g~------~~~~~~~~ 514 (702)
..+++|+++|.|||++|-.+|-.+ |..+..+ ++. .++... .-. .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999888765 6665555 221 122222 101 12334555
Q ss_pred HHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 515 FSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 515 f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+..++. ..+++|+|||+-....-+-- ...+ ++..+. ....+.-||.|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l----~~~e----v~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL----PLEE----VISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS----CHHH----HHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC----CHHH----HHHHHH--hCcCCCEEEEECCCC
Confidence 555543 45899999998664321100 0122 333333 234455677788764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00077 Score=64.73 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34569999999999999999999999875544
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00068 Score=66.21 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|.||||+||||+++.||+.++..+ ++..++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~ 39 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDL 39 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHH
Confidence 45699999999999999999999998654 444443
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0074 Score=57.13 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
....|++++++|.||||+|-++|-+. |..+..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34679999999999999999997664 6666555
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0019 Score=61.14 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.|+|+||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999987753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0021 Score=66.17 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=30.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
..++++||+|+|||++++.||..++..++..+.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46899999999999999999999998888776543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0042 Score=66.66 Aligned_cols=35 Identities=31% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
++..++++||+|+||||++..||..+ +..+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999999998766 556655554
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=65.39 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=33.8
Q ss_pred EEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 278 VLVIGATNRPD--AVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 278 v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
|.+|.+|.++. .++..++. -|...|.+...+..+...|+.
T Consensus 379 IhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 379 IHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred eEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 78888888876 78888888 788889999999988888874
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0024 Score=69.65 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67777778999999999999999888753 446666553
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=62.72 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=26.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..++|.|+||+||||+++.|+..++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999876543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0035 Score=65.01 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
|++++.-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778888999999999999999999865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=72.14 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
++.-+.|+||+|+|||||+++|++.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45679999999999999999999865
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0057 Score=61.68 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=26.3
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|++.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345678889999999999999999999876
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=62.60 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 44689999999999999999999999876554
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=63.88 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999876543
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=66.06 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=28.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
-+++.||||+||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999999988876654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=62.68 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 160 GILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
.|+|.|+|||||||+++.|++.++ .++..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 489999999999999999999886 235555433
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=63.33 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
..++-|+|.||||+||+|.|+.||+.++.+ .++..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 445668899999999999999999999765 45555554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=62.35 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+.-++|.|+||+||||+++.||..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345689999999999999999999998876544
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00089 Score=66.66 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-eEEEEecccccccCcCchHHHH-------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-NFIHIKGPELLNKYVGESELAV------------------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l~~~~~g~~~~~~------------------------- 511 (702)
+.+.++.-+.|.||+|+|||||+++++..... --+.++..++...-.......+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Q ss_pred ---------------------------------HHHHHHHHhCCCe-------EEEEeC-cchhhcccCCCCchHHHHHH
Q 045279 512 ---------------------------------RTLFSRARTCSPC-------ILFFDE-VDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 512 ---------------------------------~~~f~~a~~~~~~-------vl~iDE-id~l~~~r~~~~~~~~~~~~ 550 (702)
|-.+.+|....|. +|++|| ...|. ....
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD-----------~~~~ 169 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-----------VAQQ 169 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCC-----------HHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCC-----------HHHH
Q ss_pred HHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 551 NQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 551 ~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
..++..+...... +..||++|++.+.+
T Consensus 170 ~~l~~~l~~l~~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 170 SALDKILSALSQQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHH
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=61.15 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=26.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|+||+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999999987664
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=64.13 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
...++|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999998876654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00085 Score=66.79 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..+.|+|++|+||||+++.||+.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 5679999999999999999999999987654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0082 Score=63.21 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|||||||+++|+...
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 356778889999999999999999999876
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0015 Score=62.63 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=27.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEe
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-GVPFYKIS 190 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~ 190 (702)
+..|+|.|++|+||||+++.|++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 46666553
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=63.71 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|.|+||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998776543
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0017 Score=61.62 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEe
Q 045279 160 GILLYGPPGCGKTKLAHAIANET---GVPFYKIS 190 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l---~~~~~~i~ 190 (702)
.|+|.|+|||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999988 78877654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.022 Score=62.36 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=33.1
Q ss_pred EEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 278 VLVIGATNRPD--AVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 278 v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
+.+|.+|..+. .++..++. .|...|.|...+..+...|+..
T Consensus 333 I~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 333 IHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred cEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 67777787765 58888877 7888899999999999888853
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0037 Score=70.33 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556668899999999999999999755
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=60.70 Aligned_cols=29 Identities=41% Similarity=0.633 Sum_probs=25.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
-++|.||||+||||+++.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0081 Score=65.41 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67888999999999999999999887654 456666653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0064 Score=71.36 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh-----CCe----EE----------EEecccccccCcCchHHHHHHHHHHHH-hC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA-----GAN----FI----------HIKGPELLNKYVGESELAVRTLFSRAR-TC 521 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~----~~----------~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~ 521 (702)
.+.-++|+||+|+||||+.+.++... +.. -. .+...+.............+++...++ ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34458899999999999999987532 211 01 111111111111111112222222222 46
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
.|.+|++||.-+=.. ......+...++..+.. ..+..+|++|+..+...
T Consensus 752 ~p~LlLLDEP~~GlD------~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 752 SQSLVILDELGRGTS------THDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TTCEEEEESTTTTSC------HHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CCCEEEEeCCCCCCC------HHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 789999999654221 11113344455555421 23456788899876554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0088 Score=62.49 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|.||+|||||||+++|+...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356778889999999999999999999876
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0021 Score=63.43 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=28.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
..++++||+|+|||.++.+++..++.+++.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3499999999999999999988887777666554
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=61.69 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+.-++|.|+||+||||+++.|+..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3458899999999999999999999877644
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0016 Score=63.58 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=28.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..+.|+||+||||||+++.|++.++.+++ +..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i 39 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAI 39 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCcce
Confidence 45999999999999999999999986654 44444
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.028 Score=62.79 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=79.1
Q ss_pred CcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHH----HhCCe---EEEEeccccc-----
Q 045279 433 GLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN----EAGAN---FIHIKGPELL----- 500 (702)
Q Consensus 433 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~----~~~~~---~~~i~~~~l~----- 500 (702)
|.+..++.+.+.+... +......+.++|++|+|||+||+.+++ ..... .+.++.+...
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 7777777776655321 112345678999999999999999996 23221 1223332210
Q ss_pred -------ccC--------c----CchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC
Q 045279 501 -------NKY--------V----GESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA 560 (702)
Q Consensus 501 -------~~~--------~----g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~ 560 (702)
... . ......+...+....... +.+|+||+++... .+ .+. ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~-~~--- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA-QE--- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH-HH---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc-cc---
Confidence 000 0 001122233333333343 7899999988643 11 111 11
Q ss_pred CCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 561 DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 561 ~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
.+..||.||........ . +..+..+.++..+.++-.++|.....
T Consensus 264 ---~gs~ilvTTR~~~v~~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 264 ---LRLRCLVTTRDVEISNA-A---SQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp ---TTCEEEEEESBGGGGGG-C---CSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred ---CCCEEEEEcCCHHHHHH-c---CCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 23456667764332221 1 11335688999999988888887743
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=62.52 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=25.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
.|+|.|+|||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999987654
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=61.14 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+.-++|.|+||+||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998766544
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=62.65 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=27.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
.++|.||||+||+|.|+.||+.++.+. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998754 5545544
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=61.85 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=23.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
+.-++|.|+||+||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 345889999999999999999999998876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=61.94 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+.-++|.|++|+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4568999999999999999999999876654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.013 Score=63.60 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888899999999999999999887653 456766655
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0066 Score=71.27 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
+..+..++|+||+|+||||+.+.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 445678999999999999999998743
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0046 Score=69.95 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 467999999999999888776543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=72.09 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|+||+|+|||||+++++..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999754
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=63.62 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.|+|.|+||+||||+++.|++.++.++ ++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHH
Confidence 489999999999999999999998654 444444
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=63.65 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+..++|.|+||+||||+++.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345689999999999999999999998776543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.002 Score=61.71 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=28.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
++.-++|.||+|+||||++++|+..++..+ ++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 455688999999999999999999997644 444443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.018 Score=59.29 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68888999999999999999999987654 345655553
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.01 Score=64.28 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+..+..++|+||+|+||||+++.|+..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45677889999999999999999999876
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=59.92 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=26.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..++|.||||+||||+++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458899999999999999999998765543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0066 Score=68.57 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++++.-+.++||+|+||||++++++...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34566678999999999999999999755
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0022 Score=63.14 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35689999999999999999999999776554
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=67.78 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
+..|+|+||+|||||+|+..||+.++..++..+.-.+..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~ 79 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKG 79 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccc
Confidence 3469999999999999999999999988877666554443
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=61.40 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.9
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
.-++|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999886
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0037 Score=58.98 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l 194 (702)
.++..++|+|+||+||||+++.|+..++ .++..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4567799999999999999999999874 44555654443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0022 Score=63.69 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=26.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..++|+||||+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999986543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=63.25 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=26.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.|.|+|++||||||+++.|++ ++.+++ +...+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i--~~d~~~ 35 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL--DADKLI 35 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE--EHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE--EccHHH
Confidence 489999999999999999999 876654 444443
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0021 Score=59.52 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=26.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|+||+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999987764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=62.68 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998766544
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.003 Score=71.19 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4556668999999999999999999755
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0026 Score=61.15 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
..++..++|+||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999885
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0047 Score=62.83 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=32.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
+.-++|.||+|+|||+|+..||+.++..++..+.-.+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 3458899999999999999999999877776665555443
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0022 Score=61.12 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+.-++|.|+||+||||+++.|+..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999998765543
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=62.41 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776544
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=61.19 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.0
Q ss_pred cceEEEcCCCCChhHHHHHHHH-HhCCeE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN-EAGANF 491 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~-~~~~~~ 491 (702)
.-++|.||||+||||+++.++. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4578999999999999999998 455433
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0048 Score=62.84 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=30.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.-++|.||+|||||+|+..||+.++..++..+.-.+..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 358899999999999999999999876666555544433
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0023 Score=63.45 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.++..|+|.||||+||||+|+.|++.++.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998765543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=63.05 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..|+|.||||+||||+++.||..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999875543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=62.74 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=28.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..+.|.||||+||||+++.|++.++.++ ++...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcH
Confidence 35699999999999999999999998665 444444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0031 Score=73.29 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=18.6
Q ss_pred cceEEEcCCCCChhHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999977766543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=60.30 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=30.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67777789999999999999999888654 456666553
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.+..+.|+||+|+|||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345799999999999999999998764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0082 Score=65.20 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67777778999999999999999887643 456666554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0028 Score=59.39 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE 498 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 498 (702)
.+.-+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34567899999999999999999987 88888776543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0076 Score=64.59 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechhhhcc--------cccccHHHHHHHHHHHHhhCCceEEech
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISATEVVSG--------VSGASEENIRDLFSKAYRTAPSIVFIDE 225 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~~~l~~~--------~~g~~~~~~~~~f~~a~~~~p~il~iDE 225 (702)
++..++|+||+|+||||+++++++.++. .++.+ ...+... ............+..+....|.++++.|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 3456899999999999999999998753 23332 2211000 0001111223444555667899999998
Q ss_pred h
Q 045279 226 I 226 (702)
Q Consensus 226 i 226 (702)
+
T Consensus 245 i 245 (418)
T 1p9r_A 245 I 245 (418)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0039 Score=60.10 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999999885
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=62.05 Aligned_cols=32 Identities=38% Similarity=0.505 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+.|+||+||||||+++.|++ ++.+++ +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 488999999999999999998 777764 44444
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=26.7
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|+...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456788889999999999999999999875
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=61.67 Aligned_cols=27 Identities=22% Similarity=0.232 Sum_probs=24.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
..|+|.|+|||||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 469999999999999999999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=57.28 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccccccCcCchHHHH-----------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNKYVGESELAV----------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~~~g~~~~~~----------------- 511 (702)
+.+.++.-+.|.||+|+||||++++++... +..+-.+...... +.+....++
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~ 106 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI--MPGTIKENIIFGVSYDEYRYRSVIKA 106 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCC--CSBCHHHHHHTTSCCCHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcc--cCCCHHHHhhccCCcChHHHHHHHHH
Q ss_pred -------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHHHHHHh-hh
Q 045279 512 -------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLNQLLIE-LD 558 (702)
Q Consensus 512 -------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~-l~ 558 (702)
|-.+.+|....|.+|++|| .-.|. ......++.. +.
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD-----------~~~~~~i~~~l~~ 175 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD-----------VLTEKEIFESCVC 175 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC-----------HHHHHHHHHHCCC
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC-----------HHHHHHHHHHHHH
Q ss_pred CCCCCCcEEEEEecCC
Q 045279 559 GADKRKGVFVIGATNR 574 (702)
Q Consensus 559 ~~~~~~~~~vI~atn~ 574 (702)
.... +..||++|+.
T Consensus 176 ~~~~--~~tvi~vtH~ 189 (229)
T 2pze_A 176 KLMA--NKTRILVTSK 189 (229)
T ss_dssp CCTT--TSEEEEECCC
T ss_pred HhhC--CCEEEEEcCC
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.004 Score=70.02 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++.-+.|.||+|+||||+.++|+..+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44557899999999999999999754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.01 Score=66.90 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3555668999999999999999999755
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=67.15 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhc-----c---cccccHHHHHHHHHHHHhhCCceEEech
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVS-----G---VSGASEENIRDLFSKAYRTAPSIVFIDE 225 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~p~il~iDE 225 (702)
.++..++|+||+|+||||++++|++.+.. ..+.++...... . +........+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45567999999999999999999988742 234444322100 0 1100112335566777788999999999
Q ss_pred hh
Q 045279 226 ID 227 (702)
Q Consensus 226 id 227 (702)
+-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 84
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0097 Score=67.00 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999999754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0013 Score=63.51 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.+..|+|.|+|||||||+++.|++.++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356799999999999999999999876443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0029 Score=61.13 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEechhhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISATEVV 195 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~~l~ 195 (702)
..++..++|.|+||+||||+++.|++.++ .+++.++...+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34556799999999999999999998774 557777755443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=61.48 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.++..+.|+||+|+||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456679999999999999999999987
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0028 Score=63.19 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
++..|.|.||+|+||||+++.|++.++..++ +...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCce
Confidence 4467999999999999999999999986654 44444
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.003 Score=60.55 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=26.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.-|+|.|+||+||||+++.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4578999999999999999999998766554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=58.49 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|.||.|+|||||+++|++.+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356777889999999999999999999987
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=61.19 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..|.|+|++||||||+++.+++.++.++ +++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~v--id~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHV--VNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEE--EECcHH
Confidence 3588999999999999999999988766 445444
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0061 Score=62.45 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhccCCC--cccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 130 ESVLEELKMEVIVPLYHPQ--LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~--~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+++.+.+.+...+.... ..-.+.+.++..+.|+||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455555555544332211 0112345677889999999999999999999886
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=61.30 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.2
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999876653
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0028 Score=60.87 Aligned_cols=29 Identities=31% Similarity=0.630 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|.|.|++|+||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58999999999999999999999977754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=60.84 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++.-+.|+||+|+||||+++.|++.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4556799999999999999999999864
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.02 Score=62.77 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=28.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..+..|+|+|+||+||||++..||..+ +..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345689999999999999999998765 566666665
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0015 Score=63.08 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
.+..|+|.|+|||||||+++.|++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34579999999999999999999987543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0034 Score=60.61 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
++.-++|+||+|+||||+++.|+..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0032 Score=69.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
-+.|.||+|+||||++++|+..+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999999754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.014 Score=63.33 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=32.2
Q ss_pred ccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 435 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++..+.+.+...+.....--.+....+.-++|+||+|+||||+++.|+..+
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34445555555444332111011223345558899999999999999999876
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.007 Score=74.64 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++..+.++||+|+||||+++++.+.+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566678999999999999999999865
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.025 Score=58.51 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.++.-+.|+||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999876
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0031 Score=60.24 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=25.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0029 Score=61.25 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776554
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0064 Score=68.40 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++.-+.|+||+|+|||||++.|+..+.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45678899999999999999999998763
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=63.25 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=28.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..+.|.|++|+||||+++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 55789999999999999999999999877654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0074 Score=63.18 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhccCCC--cccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 130 ESVLEELKMEVIVPLYHPQ--LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~--~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+++.+.+.+...+.... ..-.+.+.++..++|+||+|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4455555555544433221 1113345677889999999999999999999886
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.01 Score=73.18 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=26.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++++..+.|+||+|+|||||+++|.+.+.
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 467888899999999999999999998764
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0035 Score=61.20 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.2
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
++|.||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998765443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0071 Score=57.81 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l 499 (702)
.++.-+.|.||+|+||||++++|+..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445668899999999999999999988 444345554443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.026 Score=58.22 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789999999999999999998776 455555543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=60.37 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=27.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|.|.|++||||||+++.|++. +.+++ +...+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHH
Confidence 456999999999999999999998 76654 44444
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.016 Score=68.30 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~ 180 (702)
.+..++|+||+|+||||+.+.++.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999843
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=68.14 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.1
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.-++|+||+|+||||+.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999854
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0035 Score=73.64 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=20.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+.-+.|+||+|+|||||+++|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444578999999999999999984
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0041 Score=58.82 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=26.8
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~ 495 (702)
++|.|+||+||||+++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999988 88887664
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.017 Score=56.65 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.7
Q ss_pred CcceEEEcCCCCChhHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVA 484 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la 484 (702)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3568999999999998766554
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=59.94 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=27.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEe
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIK 495 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~ 495 (702)
+.-++|.|++|+||||+++.|+..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999988 56776654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.012 Score=56.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
..+.-+.|.|++|+||||+++.|+..+ +.+++.++..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345679999999999999999999876 4555555433
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0031 Score=60.34 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
++..+.|+||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998764
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0052 Score=61.20 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=31.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATEVVS 196 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~l~~ 196 (702)
+..|.|.|++||||||+++.|+..++.+ +..++..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4569999999999999999999998865 34567666644
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=61.17 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=24.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+.++..+.|+||+|+|||||++.|++.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45677789999999999999999999977
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0024 Score=61.46 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~~~l 194 (702)
.++.-+.|+|+||+||||+++.|++.+ +.. .++...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 455678999999999999999999987 444 3444443
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
-++|.|+||+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0048 Score=60.49 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..+.+.||+|+||||+++.||..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568899999999999999999999876643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.004 Score=59.65 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+.+.|++|+||||+++.++. ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88766554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.005 Score=60.63 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
...+..|.|.|++|+||||+++.|++.++.+++ +...+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCe
Confidence 345567999999999999999999999987654 44444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 702 | ||||
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-84 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 7e-77 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-84 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 6e-77 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 7e-66 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 3e-57 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 6e-54 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 3e-51 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 2e-47 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 1e-39 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 3e-29 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-27 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 9e-28 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 2e-26 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 2e-27 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 2e-26 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 5e-21 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 2e-16 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-15 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 2e-15 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 1e-14 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 2e-09 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 7e-14 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 3e-13 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-08 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 2e-06 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 4e-08 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 4e-05 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 2e-07 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 8e-07 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 4e-06 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 5e-06 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 6e-04 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 7e-06 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 3e-05 | |
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 1e-04 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 4e-04 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 9e-04 | |
| d1rkba_ | 173 | c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien | 0.002 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.002 | |
| d1l8qa2 | 213 | c.37.1.20 (A:77-289) Chromosomal replication initi | 0.002 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 0.002 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 0.002 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 0.003 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.003 | |
| d1yj5a2 | 172 | c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p | 0.003 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 0.003 | |
| d1pzna2 | 254 | c.37.1.11 (A:96-349) DNA repair protein Rad51, cat | 0.004 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.004 | |
| d1e6ca_ | 170 | c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr | 0.004 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 265 bits (678), Expect = 2e-84
Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 17/260 (6%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
+ DV G D + E +V ++ P +++ G + G L+ GPPG GKTL+AKA+
Sbjct: 7 IKTTFADVAGCDEAKEEV-AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
A EA F I G + + +VG VR +F +A+ +PCI+F DE+DA+ +RG G
Sbjct: 66 AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 544 W---VVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
E+ LNQ+L+E+DG + +G+ VI ATNRPDV+D A+LRPGRF + + V LP
Sbjct: 126 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660
R IL+ R+ P+ +D IA + SGADLA ++NEAA+ A
Sbjct: 186 GREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNKR----- 238
Query: 661 SDVTPFTIKLTHFEQALSKI 680
+ + FE+A KI
Sbjct: 239 ------VVSMVEFEKAKDKI 252
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 245 bits (626), Expect = 7e-77
Identities = 101/293 (34%), Positives = 141/293 (48%), Gaps = 53/293 (18%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F D+ G + EE+ E++ L P Q LG + G+L+ GPPG GKT LA AIA E
Sbjct: 10 TFADVAGCDEAKEEVA-ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---R 238
VPF+ IS ++ V G +RD+F +A + AP I+FIDEIDA+ +R
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
+ + + Q++ MD ++VI ATNRPD +DPAL RPG
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEG-----------------IIVIAATNRPDVLDPALLRPG 171
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
RFDR++V+G+PD R QIL V R + + D IAR TPGF GADLA L N+A
Sbjct: 172 RFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALF 231
Query: 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411
A + + ++M +FE+A +
Sbjct: 232 AARG--------------------------------NKRVVSMVEFEKAKDKI 252
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 264 bits (677), Expect = 2e-84
Identities = 101/259 (38%), Positives = 140/259 (54%), Gaps = 17/259 (6%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
P V ++DV G + + E + IV +K P + E G + G LL GPPG GKT +A+A
Sbjct: 3 APKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
VA EA FI G + + +VG VR LF A+ +PCI+F DE+DA+ KRG
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121
Query: 543 GW---VVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
G E+ LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF + + + P
Sbjct: 122 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 181
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659
R IL AR KP+ + VDL +A K GADL ++NEAA+ A +
Sbjct: 182 KGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGRR---- 235
Query: 660 SSDVTPFTIKLTHFEQALS 678
I + E+A S
Sbjct: 236 -------KITMKDLEEAAS 247
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 245 bits (626), Expect = 6e-77
Identities = 109/289 (37%), Positives = 138/289 (47%), Gaps = 53/289 (18%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F+D+ G E EELK E++ L +P +G R G+LL GPPG GKT LA A+A E
Sbjct: 7 TFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 65
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---R 238
VPF S ++ V G +RDLF A R AP IVFIDEIDA+ KR +
Sbjct: 66 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 125
Query: 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
+ + + QL+ MD K ++V+ ATNRPD +DPAL RPG
Sbjct: 126 DEREQTLNQLLVEMD-----------------GFEKDTAIVVMAATNRPDILDPALLRPG 168
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
RFDR+I + PD R QIL + R + DL +A+ TPGFVGADL L N+A L
Sbjct: 169 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALL 228
Query: 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEA 407
A + R ITM D EEA
Sbjct: 229 AARE--------------------------------GRRKITMKDLEEA 245
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 216 bits (550), Expect = 7e-66
Identities = 110/237 (46%), Positives = 154/237 (64%), Gaps = 5/237 (2%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+P V WED+GGL+ ++ E + ++ P+++ +FG+ G L YGPPGCGKTL+AKA
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++ RG
Sbjct: 61 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 120
Query: 543 G---WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
G +R++NQ+L E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 121 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656
R IL+A RK P+ VDL +A+ SGADL + A A+ + + S
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRESIES 235
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 193 bits (491), Expect = 3e-57
Identities = 98/248 (39%), Positives = 136/248 (54%), Gaps = 20/248 (8%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
++D+GG+E V EL+ V P+ HP G+ P G+L YGPPGCGKT LA AIANE
Sbjct: 5 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 64
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
F I E+++ G SE N+R++F KA + AP ++F DE+D+IA R +
Sbjct: 65 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 124
Query: 242 ---RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298
R++ Q++T MD S V +IGATNRPD +DPA+ RPG
Sbjct: 125 GAADRVINQILTEMDG-----------------MSTKKNVFIIGATNRPDIIDPAILRPG 167
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358
R D+ I + +PDE +RV IL R V DL +A+ T GF GADL + +A L
Sbjct: 168 RLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 227
Query: 359 AMKRIIDQ 366
A++ I+
Sbjct: 228 AIRESIES 235
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 184 bits (466), Expect = 6e-54
Identities = 122/288 (42%), Positives = 174/288 (60%), Gaps = 32/288 (11%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANE
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
TG F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+E
Sbjct: 62 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 121
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRIV+QL+T MD + V+V+ ATNRP+++DPALRR GRFD
Sbjct: 122 RRIVSQLLTLMDGLKQRAH-----------------VIVMAATNRPNSIDPALRRFGRFD 164
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361
RE+ +G+PD R++IL + T+N+++ DL ++A T G VGADLAAL ++A A++
Sbjct: 165 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 224
Query: 362 RIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATK 409
+ +D +L +I E M L +TM DF A
Sbjct: 225 KKMDL--IDLEDETIDA-------------EVMNSLAVTMDDFRWALS 257
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 176 bits (447), Expect = 3e-51
Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 14/263 (5%)
Query: 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485
V ++DVGG + + ++ P ++ GV G LLYGPPG GKTLIA+AVAN
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 486 EAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWV 545
E GA F I GPE+++K GESE +R F A +P I+F DE+DA+ KR K G V
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120
Query: 546 VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLI 605
R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF + + + +P R I
Sbjct: 121 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 180
Query: 606 LEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL---------EDKLIS 656
L+ + + D VDL +A GADLAA+ +EAA+ A+ ED+ I
Sbjct: 181 LQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238
Query: 657 SKSSSDVTPFTIKLTHFEQALSK 679
++ + + + + F ALS+
Sbjct: 239 AEVMNSL---AVTMDDFRWALSQ 258
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 168 bits (426), Expect = 2e-47
Identities = 37/272 (13%), Positives = 74/272 (27%), Gaps = 32/272 (11%)
Query: 403 DFEEATKMVQPSSRREGFSAIPNVKW--EDVGGLDYLRHEFDRYIV--RRIKFPEEYEEF 458
F++ + + + + +V + G + + + P E
Sbjct: 58 VFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFG 117
Query: 459 GVDLETGFLL-YGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGESELAVRTLF 515
G +G ++ G GKT + A+ G + ++ E L+ Y + + V +
Sbjct: 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIA 177
Query: 516 SRARTCSPCILFFDEVDALTTKRGKEGGW-VVERLLNQLLIELDGADKRKGVFVIGATNR 574
++ D + + G + R LL ++ +G VI + N
Sbjct: 178 RAML--QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235
Query: 575 ---PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCE 631
D + V R V D +L
Sbjct: 236 TSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQ----------------- 278
Query: 632 NLSGADLAAMMNEAA-MAALEDKLISSKSSSD 662
L E + + K K +S
Sbjct: 279 -RLTHTLQTSYGEHSVLTIHTSKQSGGKQASG 309
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 146 bits (370), Expect = 1e-39
Identities = 38/284 (13%), Positives = 86/284 (30%), Gaps = 47/284 (16%)
Query: 99 KKEESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIV--PLYHPQLPQWLGVR 156
K + + + G + G M+ +++ P + ++ G R
Sbjct: 61 KNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHR 120
Query: 157 PMAGILL-YGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKA 213
+G+++ G GKT L HA+ G + + E +SG + + D+
Sbjct: 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM 180
Query: 214 YRTAPSIVFIDEIDAIASKR-ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272
++ ID + + N R L++ + +
Sbjct: 181 --LQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIG-----------------AM 221
Query: 273 SKPGYVLVIGATNR---PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329
+ +VI + N D + ++ R + ++ D + Q+L+ L+
Sbjct: 222 AASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQR-- 279
Query: 330 SFDLVKIARSTPGFVGADLAALANKAGNLA---MKRIIDQRKSE 370
+ L + L K+ ++ S
Sbjct: 280 --------------LTHTLQTSYGEHSVLTIHTSKQSGGKQASG 309
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 117 bits (295), Expect = 3e-29
Identities = 31/258 (12%), Positives = 70/258 (27%), Gaps = 47/258 (18%)
Query: 440 EFDRYIVRRIKF-PEEYEEF---GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495
+ ++ ++ ++ + + + +L GP GKT +A A+ G +++
Sbjct: 127 AWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 186
Query: 496 GPELLNKY-VGESELAVRTLFSRARTCS------PCILFFDEVDALTTKRGKEGGWVV-- 546
P + +G + +F + P + +D L G V
Sbjct: 187 LPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLD--GSVKVNL 244
Query: 547 ---ERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 603
+ I N RF K + +
Sbjct: 245 EKKHLNKRTQIFPP----------GIVTMNEY---SVPKTLQARFVKQIDFRPKDYLKHC 291
Query: 604 L-ILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSD 662
L E L K+ I + + A+ A + + E + +
Sbjct: 292 LERSEFLLEKRIIQ--SGIALLL--MLIWYRPVAEFAQSIQSRIVEWKER--LDKE---- 341
Query: 663 VTPFTIKLTHFEQALSKI 680
L+ +++ +
Sbjct: 342 -----FSLSVYQKMKFNV 354
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 112 bits (282), Expect = 1e-27
Identities = 42/358 (11%), Positives = 94/358 (26%), Gaps = 75/358 (20%)
Query: 46 KVEPEFDLMKSMLRDSYSESKITRRKSEEKNIEFEVMPRK-------------------- 85
K + L+ L YS + +E+ ++ +
Sbjct: 16 KCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQA 75
Query: 86 IDLVNAKSRE--VEMKKEESVKGGMGLGAEELK-GKEGPRFQDLGGMESVLEELKM---- 138
+D V AK R +++ +E+ + + + D+ + + L
Sbjct: 76 VDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPK 135
Query: 139 --EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196
V+ + + L GP GKT LA A+ G ++
Sbjct: 136 MDSVVYDFLKCMV---YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL 192
Query: 197 -GVSGASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRE-NLQREMERRIVT-- 246
G + + +F PS I+ +D + + +++ +E++ +
Sbjct: 193 NFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKR 252
Query: 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVL 306
+ I N RF ++I
Sbjct: 253 TQIFPP---------------------------GIVTMNE---YSVPKTLQARFVKQIDF 282
Query: 307 GVPDENAR-VQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRI 363
D ++ L ++ + + A+ A +R+
Sbjct: 283 RPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 110 bits (275), Expect = 9e-28
Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 25/204 (12%)
Query: 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENI-RDLFSKAY 214
P+ +LL GPP GKT LA IA E+ PF KI + + + G S ++ + +F AY
Sbjct: 38 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY 97
Query: 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274
++ S V +D+I+ + R + L+ +
Sbjct: 98 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA-----------------PPQ 140
Query: 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLV 334
+L+IG T+R D + F I VP+ Q+L L + +
Sbjct: 141 GRKLLIIGTTSRKDVLQEMEML-NAFSTTIH--VPNIATGEQLLEALELLGNFK-DKERT 196
Query: 335 KIARSTPG---FVGADLAALANKA 355
IA+ G ++G + +
Sbjct: 197 TIAQQVKGKKVWIGIKKLLMLIEM 220
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 106 bits (264), Expect = 2e-26
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 6/193 (3%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSP 523
LL GPP GKT +A +A E+ FI I P+ + + ++ A++ +F A
Sbjct: 42 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQL 101
Query: 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL 583
+ D+++ L + L L++ + + + +IG T+R DV+ +
Sbjct: 102 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161
Query: 584 RPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA-QSKFCENLSGADLAAMM 642
F ++V P +LEAL D + TIA Q K + G M+
Sbjct: 162 L-NAFSTTIHV--PNIATGEQLLEALELLGNFKD-KERTTIAQQVKGKKVWIGIKKLLML 217
Query: 643 NEAAMAALEDKLI 655
E ++ + +
Sbjct: 218 IEMSLQMDPEYRV 230
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 110 bits (274), Expect = 2e-27
Identities = 35/285 (12%), Positives = 81/285 (28%), Gaps = 36/285 (12%)
Query: 434 LDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493
+++ +F+ + ++ + ++ V+ T FLL G PG GKT + A+ E N I
Sbjct: 4 VNFTDKQFENRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 494 IKGPEL---LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG------W 544
I + +L + + S +
Sbjct: 63 IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 122
Query: 545 VVERLLNQL-----LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
V + L ++ K +G R + M R +
Sbjct: 123 VPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIV-V 181
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659
LE L + + + + S + ++ + + ++ +S K
Sbjct: 182 KNLPTNLETLHKTG----LFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGK- 236
Query: 660 SSDVTPFTIKLTHFEQALSKISPSVSE---LQIQRYKTLSETFKA 701
+ L +I + + +K + + ++
Sbjct: 237 ------------EIQPTLERIEQKMVLNKHQETPEFKAIQQKLES 269
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 106 bits (266), Expect = 2e-26
Identities = 31/314 (9%), Positives = 65/314 (20%), Gaps = 65/314 (20%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F D + + L+ E+I + P LL G PG GKT L AI E
Sbjct: 5 NFTDKQFENRLNDNLE-ELIQGKKAVESP--------TAFLLGGQPGSGKTSLRSAIFEE 55
Query: 182 TGVPFYKISATEVV---SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----- 233
T I + +D+ + +
Sbjct: 56 TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115
Query: 234 ENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293
+ ++ ++ P +G R + +
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAV-----------PKINSYLGTIERYETMYAD 164
Query: 294 LRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353
R + + + +L L
Sbjct: 165 DPMTARATPKQAHDIVV-------------------------------KNLPTNLETLHK 193
Query: 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413
++ + S + E+ ++ + + + ++
Sbjct: 194 TGLFSDIRLYNREGVKLYSSLETPSISPKE------TLEKELNRKVSGKEIQPTLERIEQ 247
Query: 414 SSRREGFSAIPNVK 427
P K
Sbjct: 248 KMVLNKHQETPEFK 261
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 90.8 bits (224), Expect = 5e-21
Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 31/245 (12%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ G E + ++L++ + P+ +LL+GPPG GKT LAH IA+E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN-LQREM 240
GV S + + I+FIDEI ++ + E L M
Sbjct: 59 LGVNLRVTSGPAIE-------KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 111
Query: 241 ERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRF 300
E ++ ++ + + + +IGAT RP + L
Sbjct: 112 EDFVMDIVIGQGPAARTIR-------------LELPRFTLIGATTRPGLITAPLLSRFGI 158
Query: 301 DREIVLGVPDENARVQILSVLTRNLRV--EGSFDLVKIARSTPGFVGADLAALANKAGNL 358
+ P+E A+ + +R+ E + ++ + +R T + + A
Sbjct: 159 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 218
Query: 359 AMKRI 363
+ I
Sbjct: 219 GEEVI 223
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 77.3 bits (189), Expect = 2e-16
Identities = 47/259 (18%), Positives = 87/259 (33%), Gaps = 35/259 (13%)
Query: 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE 486
++ G + L+ + Y+ E + + LL+GPPG GKT +A +A+E
Sbjct: 7 TLDEYIGQERLKQKLRVYL--------EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 487 AGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG--- 543
G N GP + + L ILF DE+ L+ + +
Sbjct: 59 LGVNLRVTSGPAIEKPGDLAAIL-------ANSLEEGDILFIDEIHRLSRQAEEHLYPAM 111
Query: 544 --WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
+V++ ++ Q + +IGAT RP ++ +L + L P
Sbjct: 112 EDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELA 171
Query: 602 RGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661
+G++ +A I + L +S + + A
Sbjct: 172 QGVMRDARLLGVRITEEAALEIGRRS----RGTMRVAKRLFRRVRDFAQVAGEE------ 221
Query: 662 DVTPFTIKLTHFEQALSKI 680
I +AL+ +
Sbjct: 222 -----VITRERALEALAAL 235
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 76.0 bits (186), Expect = 1e-15
Identities = 53/262 (20%), Positives = 90/262 (34%), Gaps = 39/262 (14%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELAVRTLFSRA---- 518
L+ GP G GKT IA+ +A A A FI ++ + E + +R L A
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 110
Query: 519 -RTCSPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGADKRKGVFVIGATN--- 573
I+F DE+D + K G V E + LL ++G+ ++ +
Sbjct: 111 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 170
Query: 574 ---------RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILE--------------ALA 610
RP + + GR + + + + IL A
Sbjct: 171 IASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 228
Query: 611 RKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKL 670
+ + IA++ F N ++ A M L DK+ S S + I
Sbjct: 229 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 288
Query: 671 THFEQALSKISPSVSELQIQRY 692
+ AL ++ V + R+
Sbjct: 289 AYVADALGEV---VENEDLSRF 307
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 75.3 bits (184), Expect = 2e-15
Identities = 61/257 (23%), Positives = 91/257 (35%), Gaps = 28/257 (10%)
Query: 128 GMESVLEELKMEVIVPLYHPQLPQWL-GVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186
G + + + QL + L IL+ GP G GKT++A +A PF
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 187 YKISATEV--VSGVSGASEENIRDLFSKA-----YRTAPSIVFIDEIDAIASKRENLQRE 239
K+ AT+ V V + IRDL A IVFIDEID I K E +
Sbjct: 78 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGAD 137
Query: 240 MERRIV-TQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI--GATNRPDAVDPALRR 296
+ R V L+ ++ S + G K+ +L I GA D
Sbjct: 138 VSREGVQRDLLPLVEGSTVSTKHGMVKTDH---------ILFIASGAFQVARPSDLIPEL 188
Query: 297 PGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAG 356
GR + L +IL+ E L + ++ G ++A +
Sbjct: 189 QGRLPIRVELTALSAADFERILT--------EPHASLTEQYKALMATEGVNIAFTTDAVK 240
Query: 357 NLAMKRIIDQRKSELSG 373
+A K+E G
Sbjct: 241 KIAEAAFRVNEKTENIG 257
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 71.9 bits (175), Expect = 1e-14
Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 30/238 (12%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ G E+V ++L + + ++ +LL GPPG GKT LAH IA+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVLD--------HVLLAGPPGLGKTTLAHIIASE 58
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+ V SG + ++ + + R ++FIDEI + E L
Sbjct: 59 LQTNIH------VTSGPVLVKQGDMAAILTSLER--GDVLFIDEIHRLNKAVEELLYSAI 110
Query: 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301
+M S + ++ ++GAT R + LR RF
Sbjct: 111 EDFQIDIMIGKGPSAKSIR------------IDIQPFTLVGATTRSGLLSSPLRS--RFG 156
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLA 359
+ L +I+ + VE ++ L + ++
Sbjct: 157 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 214
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 56.5 bits (135), Expect = 2e-09
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 27/233 (11%)
Query: 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE 486
++ G + ++ + + E + ++ LL GPPG GKT +A +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLAL--------EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 58
Query: 487 AGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVV 546
N GP L+ + A+ T R +LF DE+ L + +
Sbjct: 59 LQTNIHVTSGPVLVKQ---GDMAAILTSLERGD-----VLFIDEIHRLNKAVEELLYSAI 110
Query: 547 ERLLNQLLIELDGADK-----RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
E ++I + K + ++GAT R ++ + RFG +L + T E
Sbjct: 111 EDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKE 168
Query: 602 RGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653
I++ A ++ IA+ + + K
Sbjct: 169 LKEIIKRAASLMDVEIEDAAAEMIAK---RSRGTPRIAIRLTKRVRDMLTVVK 218
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 70.2 bits (170), Expect = 7e-14
Identities = 30/240 (12%), Positives = 64/240 (26%), Gaps = 35/240 (14%)
Query: 465 GFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELLNKYVGESELAVRTLFSRART 520
L G PG GKT+ + + A F++I G N E+A R
Sbjct: 45 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRR 104
Query: 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLN---------QLLIELDGADKRKGVFVIGA 571
F + +R V++ N L + + ++
Sbjct: 105 GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV 164
Query: 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGL--ILEALARKKPIDDSVDLHTIAQ-SK 628
+ V++ + + + IL A+ + S + +
Sbjct: 165 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIAD 224
Query: 629 FCENLSGADLAA--------MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680
+ D ++ +A AA ++ I ++ ++
Sbjct: 225 ITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK-----------HIAPEDVRKSSKEV 273
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 68.3 bits (165), Expect = 3e-13
Identities = 42/299 (14%), Positives = 76/299 (25%), Gaps = 48/299 (16%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+ L E L++L + + L +P L G PG GKT +
Sbjct: 14 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWEL 66
Query: 182 ----TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ 237
T F I+ + + E R F+ + +R+
Sbjct: 67 YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYM 126
Query: 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRP 297
+ + RL Q D+ + ++ + ++
Sbjct: 127 FLVLDDAFNLAPDILSTFIRLGQEADKLGAFR--------IALVIVGHNDAVLNNLDPST 178
Query: 298 GRFDREIVLGVPDENA--RVQILSVLTRNLRVEGSFD---LVKIARSTPGFVGADLAALA 352
+ V+ IL + EGS+ L IA T D
Sbjct: 179 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 238
Query: 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411
+ + R A+Q+ I D +++K V
Sbjct: 239 ARLAIDILYRSAY----------AAQQNGRK--------------HIAPEDVRKSSKEV 273
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 32/261 (12%), Positives = 64/261 (24%), Gaps = 24/261 (9%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
+L E L + L + + G G GKT LA
Sbjct: 14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKR 69
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
K T + V+ + N+ + S R + + A+ + +
Sbjct: 70 VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV 129
Query: 242 RR----IVTQLMTCMDESHRLVQPGDQKSKSDASDSKP----GYVLVIGATNRPDAVDPA 293
++ M S R+ + + + + A+
Sbjct: 130 ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYM 189
Query: 294 L----RRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD---LVKIARSTPGFVGA 346
+ + ++ L IL + ++ L I+ G
Sbjct: 190 REKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 249
Query: 347 DLAA-----LANKAGNLAMKR 362
D +A A +A
Sbjct: 250 DGSARRAIVALKMACEMAEAM 270
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 34/279 (12%), Positives = 66/279 (23%), Gaps = 50/279 (17%)
Query: 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497
R + R D+ + G G GKT +AK
Sbjct: 21 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT 80
Query: 498 ELLNKYVGESELAVRTLFS---------------------------RARTCSPCILFFDE 530
+ + T+ S ++ DE
Sbjct: 81 VKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDE 140
Query: 531 VDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR----PG 586
++ + L ++ E+ D + + + + +
Sbjct: 141 FQSMLSSPRIAAE--DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 198
Query: 587 RFGKLLYVPLPTPDERGLILEALARKKPIDDSVD---LHTIAQ--SKFCENLSGADLAA- 640
+ G L++P E ILE A D + L I+ + A A
Sbjct: 199 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIV 258
Query: 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679
+ A A ++ +A+S+
Sbjct: 259 ALKMACEMAEAMGRD-----------SLSEDLVRKAVSE 286
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 53.6 bits (128), Expect = 4e-08
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRTA 217
IL+ GP G GKT++A +A PF K+ AT+ V V + IRDL A
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAM--- 107
Query: 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250
+ IA R + E RI+ L+
Sbjct: 108 ----KLVRQQEIAKNRARAEDVAEERILDALLP 136
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 44.4 bits (104), Expect = 4e-05
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 437 LRHEFDRYIV-----------------RRIKFPEEYEEFGVDLE-TGFLLYGPPGCGKTL 478
+ E D++I+ RR++ E ++ L+ GP G GKT
Sbjct: 8 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR---HEVTPKNILMIGPTGVGKTE 64
Query: 479 IAKAVANEAGANFIHIKGPEL 499
IA+ +A A A FI ++ +
Sbjct: 65 IARRLAKLANAPFIKVEATKF 85
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWL-----GVRPMAGILLYGPPGCGKTKLAH 176
Q + G + + +LK + + + + G +LYGPPG GKT AH
Sbjct: 12 NLQQVCGNKGSVMKLK-NWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 70
Query: 177 AIANETGVPFYKISA 191
+A E G + +A
Sbjct: 71 LVAQELGYDILEQNA 85
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 34/249 (13%), Positives = 80/249 (32%), Gaps = 25/249 (10%)
Query: 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEF----GVDLETGFLLYGPPGCGKTLIAKA 482
+ V G + ++ + + G + +LYGPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
VA E G + + ++ +K + + A + +F + GK
Sbjct: 72 VAQELGYDILEQNASDVRSKTL------LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF 125
Query: 543 GWVVERLLN-------QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVP 595
+++ + + K ++ R R R + +
Sbjct: 126 VIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQ--FRR 183
Query: 596 LPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655
+ ++ R+K D + + Q + D+ ++N + + K I
Sbjct: 184 PDANSIKSRLMTIAIREKFKLDPNVIDRLIQ------TTRGDIRQVINLLSTISTTTKTI 237
Query: 656 SSKSSSDVT 664
+ ++ ++++
Sbjct: 238 NHENINEIS 246
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 31/243 (12%), Positives = 73/243 (30%), Gaps = 33/243 (13%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY----RT 216
L+ G GK+ + NE +P+ + + + ++ + +L + R
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 217 APSIVFIDEIDAIASKRENLQREMERRIVTQL---------------MTCMDESHRLVQP 261
+ + I I ++ R+ + +DE+ LV+
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 151
Query: 262 GDQ----KSKSDASDSKPGYVLVIGATNRPDAVDPALRRP-----GRFDREIVLGVPDEN 312
+ K ++ G+ + P GR + L
Sbjct: 152 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSRE 211
Query: 313 ARVQILSVLTRNLRVEGSFDLVKIARST---PGFVG-ADLAALANKAGNLAMKRIIDQRK 368
++ L + ++ D + PG++ L NK + A+ + ++ K
Sbjct: 212 EAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK 270
Query: 369 SEL 371
+
Sbjct: 271 KLI 273
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 38.2 bits (87), Expect = 0.002
Identities = 15/136 (11%), Positives = 38/136 (27%), Gaps = 4/136 (2%)
Query: 453 EEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVR 512
+E E+ L+ G GK+ I K NE +I++ + + + +
Sbjct: 19 KEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 78
Query: 513 TLFSR----ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568
L + + + + + + L+ ++ V
Sbjct: 79 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNV 138
Query: 569 IGATNRPDVMDRAVLR 584
I + + +
Sbjct: 139 IIVLDEAQELVKLRGV 154
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 45.3 bits (106), Expect = 5e-06
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 158 MAG--ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
+ G +LL G PG GK+ +A A+AN GVP + ++ + + + R
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 61
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LL G PG GK+ IA+A+AN G +H +L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 45.1 bits (106), Expect = 7e-06
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS-GASEENIRDLFSKAYRTAPS 219
IL+ G +++ + K S + ++IR + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 77
Query: 220 ----IVFIDEIDAIASKREN 235
V + + + + + N
Sbjct: 78 YTRKYVIVHDCERMTQQAAN 97
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (102), Expect = 3e-05
Identities = 26/163 (15%), Positives = 43/163 (26%), Gaps = 35/163 (21%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
F D+ G E VL L + ++ L G G GKT +A +A
Sbjct: 10 TFADVVGQEHVLTALANGLS----LGRIHH--------AYLFSGTRGVGKTSIARLLAKG 57
Query: 182 TGVPFYKISATE------------------VVSGVSGASEENIRDLFSKAYRTAPS---- 219
+ + S E+ RDL
Sbjct: 58 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK 117
Query: 220 IVFIDEIDAIASKREN-LQREMERRIVTQLMTCMDESHRLVQP 261
+ IDE+ ++ N L + +E + +
Sbjct: 118 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 160
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 29/151 (19%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
++ + + LK + L + +L YGPPG GKT A+ E
Sbjct: 10 NLDEVTAQDHAVTVLK-------------KTLKSANLPHMLFYGPPGTGKTSTILALTKE 56
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPS----------------IVFIDE 225
P S ++ +R+ R S I+ +DE
Sbjct: 57 LYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE 116
Query: 226 IDAIASKRENLQREMERRIVTQLMTCMDESH 256
D++ + ++ R C+ ++
Sbjct: 117 ADSMTADAQSALRRTMETYSGVTRFCLICNY 147
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 41.0 bits (95), Expect = 4e-04
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
+ ILL GP G GKT +A +A +P AT + +G E++ ++ ++ +
Sbjct: 66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE--AGYVGEDVENILTRLLQ 123
Query: 216 TAP--------SIVFIDEIDAIASKRENLQ--REMERRIVTQLMTCMDESHRLVQPGDQK 265
+ IVFIDEID I+ EN R++ V Q + + E + P
Sbjct: 124 ASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG 183
Query: 266 SKSD 269
K
Sbjct: 184 RKHP 187
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 39.1 bits (91), Expect = 9e-04
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 26/155 (16%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIH--IKGPELLNKYVGESEL--AVRTLFSRARTCS 522
L+ G G GK ++A+ + + + + + + E+EL + F+ A +
Sbjct: 27 LITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSK 86
Query: 523 PCI--------LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK--RKGVFVIGAT 572
LF DE+ L+ E + R++ G K V ++ AT
Sbjct: 87 EGFFELADGGTLFLDEIGELS----LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAAT 142
Query: 573 NRPDVMDRAVLRPGRFGKLLY-----VPLPTPDER 602
NR + V + G+F + LY + + P R
Sbjct: 143 NRN--IKELV-KEGKFREDLYYRLGVIEIEIPPLR 174
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFY 187
ILL G PG GKT L +A+++G+ +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.002
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIH 493
++L G G GK+ +A VA++ A F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLD 36
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Score = 37.9 bits (87), Expect = 0.002
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 148 QLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK---ISATEVVSGVSGASEE 204
+ + LG I +YG G GKT L A NE Y+ SA + + ++
Sbjct: 27 EALENLGSLY-NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKK 85
Query: 205 NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256
+ F Y++ + +D++ ++ K E Q E T +
Sbjct: 86 GTINEFRNMYKSVDLL-LLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQIIL 135
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 37.7 bits (86), Expect = 0.002
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195
+ + G GK+ L + +A E V
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 44
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 38.0 bits (87), Expect = 0.002
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
R D+ G E +++ LK ++ M +L GPPG GKT A A+A E
Sbjct: 22 RLDDIVGQEHIVKRLK-------------HYVKTGSMPHLLFAGPPGVGKTTAALALARE 68
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA---------PSIVFIDEIDAIASK 232
++ + E ++ + E I + K A I+F+DE DA+
Sbjct: 69 LFGENWRHNFLE----LNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 124
Query: 233 REN--LQREMERRIVTQLMTCMDESHRLVQP 261
+ + + + + S ++++P
Sbjct: 125 AQQALRRTMEMFSSNVRFILSCNYSSKIIEP 155
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.003
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFY 187
I L GP G GK+ + +A + + FY
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFY 31
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 36.9 bits (84), Expect = 0.003
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Query: 158 MAG--ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS-EENIRDLFSKAY 214
M I+L G GK+ + + + P+ ++ + F
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQP 261
+ F A A + R R I+ + + +
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRS 107
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.8 bits (84), Expect = 0.003
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 144 LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY 187
LY P+ L P ++ G PG GK+ G
Sbjct: 1 LYLPESSSLLSPNPEV-VVAVGFPGAGKSTFIQEHLVSAGYVHV 43
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (86), Expect = 0.003
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 17/126 (13%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
L E + LK P P +LLYGP G GK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLP------------HLLLYGPNGTGKKTRCMALLES 56
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
P +V V+ ++ + ++ S P + I D + R +Q ++
Sbjct: 57 IFGPGVYRLKIDVRQFVTASNRKLELNVVSS-----PYHLEITPSDMGNNDRIVIQELLK 111
Query: 242 RRIVTQ 247
+
Sbjct: 112 EVAQME 117
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 37.4 bits (85), Expect = 0.004
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA 213
G+ A ++G G GKT+LAH +A +P + V + + + A
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91
Query: 214 YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256
+ + +A + +V Q + E
Sbjct: 92 QNRGLDPDEVLKHIYVARAF---NSNHQMLLVQQAEDKIKELL 131
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.004
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA 213
G+ + ++G GKT++ H +A +P + + L + A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 214 YRTAPSI-VFIDEIDAIASKRENLQREMERRIVTQLMTCM 252
R S +D + + + Q ++ + ++
Sbjct: 79 ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESR 118
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Score = 36.5 bits (83), Expect = 0.004
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFY 187
I + G GCG T + +A G F
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.93 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.91 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.86 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.84 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.83 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.83 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.82 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.81 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.78 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.73 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.71 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.7 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.7 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.69 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.69 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.68 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.68 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.66 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.65 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.64 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.63 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.63 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.62 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.61 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.6 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.58 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.57 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.57 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.56 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.49 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.49 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.47 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.47 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.46 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.44 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.41 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.4 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.39 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.37 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.34 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.34 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.25 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.24 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.09 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.06 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.04 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.99 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.96 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.7 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.49 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.96 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.9 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.84 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.81 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.78 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.77 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.76 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.76 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.71 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.7 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.7 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.69 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.68 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.68 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.67 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.63 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.63 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.62 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.62 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.6 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.6 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.59 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.57 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.57 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.56 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.54 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.51 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.49 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.48 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.45 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.44 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.43 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.42 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.4 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.4 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.39 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.37 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.36 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.35 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.34 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.34 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.33 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.31 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.31 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.31 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.3 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.3 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.29 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.27 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.27 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.26 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.25 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.23 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.22 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.21 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 97.19 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.19 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.18 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.16 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.16 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.15 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.15 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.14 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.13 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.13 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.12 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.1 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.1 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.09 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.06 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.06 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.05 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.04 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.04 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.03 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.03 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 97.03 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.02 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.99 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.98 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.98 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.98 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.97 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.97 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.93 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.93 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.92 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.91 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.88 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.87 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.86 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.84 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.83 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.78 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.75 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.75 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.73 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.71 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.7 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.67 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.64 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.63 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.58 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.56 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.54 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.52 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.52 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.51 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.49 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.45 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.43 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.41 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.39 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.38 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.37 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.32 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.31 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.23 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.19 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.15 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.1 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.02 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.02 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.99 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.97 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.88 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.88 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.87 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.85 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.82 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.74 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.72 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.59 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.51 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.49 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.34 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.26 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.25 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.24 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.23 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.2 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.15 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 95.09 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 95.06 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.96 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 94.96 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.95 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.87 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.86 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 94.81 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.78 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 94.73 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.68 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.64 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.61 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.58 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.53 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 94.45 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.35 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.3 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.24 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.22 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.11 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.08 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.06 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.05 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.99 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.98 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.87 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.83 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.78 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.63 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.62 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.62 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 93.61 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.6 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.53 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.51 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.46 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.44 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.43 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.43 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.42 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.4 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.39 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.38 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.32 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 93.32 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.31 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.3 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 93.29 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.26 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.24 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 93.17 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.11 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.1 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.09 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 93.07 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.98 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.89 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.8 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.71 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.7 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 92.66 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.59 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.56 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.54 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.48 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.45 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.45 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.44 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 92.42 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.35 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.33 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.32 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.31 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.3 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.3 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.26 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.23 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.19 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 92.19 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.16 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 92.13 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 92.03 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.02 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.02 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.0 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 91.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.89 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.87 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.83 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 91.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.48 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.48 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 91.39 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.39 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.34 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.27 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.2 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.15 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.13 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.05 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.92 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.89 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.81 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.59 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 90.56 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.34 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.31 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.25 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 90.12 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.11 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.85 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.83 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 89.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 89.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.73 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.68 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.54 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 89.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.45 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 89.19 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 89.15 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.1 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.09 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.04 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.02 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.99 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.89 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 88.84 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.76 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.68 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.53 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.46 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.4 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 88.36 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.3 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.22 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.94 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.85 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 87.81 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 87.77 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 87.35 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.34 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.31 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.19 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.14 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.11 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 87.09 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 86.66 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.66 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.56 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 86.51 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.45 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.32 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 86.32 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 86.27 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.85 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.84 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.82 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.79 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.73 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.7 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 85.48 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 85.13 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 84.79 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.14 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.05 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.94 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 83.94 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.93 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 83.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 83.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.56 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 83.53 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 83.42 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.4 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.39 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 83.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.13 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 83.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 82.54 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.37 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.49 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 81.41 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.34 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.01 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.8 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-45 Score=365.32 Aligned_cols=246 Identities=39% Similarity=0.651 Sum_probs=222.6
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..++++|+|++|++++|+.|.+.+. .+.+++.|.++|..+++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 5 ~~~~~t~~Di~Gl~~~k~~l~e~v~-~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~ 83 (256)
T d1lv7a_ 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (256)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCCHHHHhchHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 3467899999999999999998765 488999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
+|+|+++..++.+|+.|+..+||||||||+|.+++.|+... .....+++++||..|++.....+++||+|||+|+.|
T Consensus 84 ~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~l 163 (256)
T d1lv7a_ 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (256)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred cchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccC
Confidence 99999999999999999999999999999999998875543 245678899999999999888899999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|++++||||||..|+|++|+.++|.+||+.++++.++..++++..++ ..|+||+|+||+++|++|++.|+++..
T Consensus 164 d~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la--~~t~G~s~adi~~l~~~A~~~a~~~~~---- 237 (256)
T d1lv7a_ 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK---- 237 (256)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred CHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999999999999999999999999999999999988899999999 678999999999999999998887643
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..|+..||++|+.++-
T Consensus 238 -------~~i~~~d~~~Al~rv~ 253 (256)
T d1lv7a_ 238 -------RVVSMVEFEKAKDKIM 253 (256)
T ss_dssp -------SSBCHHHHHHHHHHHT
T ss_pred -------CccCHHHHHHHHHHHh
Confidence 2799999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-44 Score=360.99 Aligned_cols=241 Identities=41% Similarity=0.693 Sum_probs=220.5
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.|+++|++|+|++.+|+.|++.+ .++.+++.|.++|..+++|+||+||||||||++|+++|++++.+++.++++++.++
T Consensus 3 ~p~~~~~di~G~~~~k~~l~~~i-~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 81 (247)
T d1ixza_ 3 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 81 (247)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCcHHHHccHHHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence 47899999999999999998855 56899999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|+|+++..++.+|+.|+...||||||||+|.++++|+.. .+....+++++||.+|++.....+++||+|||+++.+|
T Consensus 82 ~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld 161 (247)
T d1ixza_ 82 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 161 (247)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred cccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccC
Confidence 999999999999999999999999999999999887554 23456789999999999998888999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
++++|||||+.+|+|++|+.++|.+||+.++.+.+...+.+++.++ ..|+||+|+||+++|++|++.|+++...
T Consensus 162 ~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la--~~t~g~s~~di~~lv~~A~l~a~~~~~~---- 235 (247)
T d1ixza_ 162 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGRR---- 235 (247)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTCS----
T ss_pred HhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC----
Confidence 9999999999999999999999999999999998888899999999 6789999999999999999988876432
Q ss_pred CCCCCCccccHHHHHHHH
Q 045279 660 SSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al 677 (702)
.|+++||++|+
T Consensus 236 -------~i~~~d~~~A~ 246 (247)
T d1ixza_ 236 -------KITMKDLEEAA 246 (247)
T ss_dssp -------SBCHHHHHHHT
T ss_pred -------CcCHHHHHHhh
Confidence 79999999996
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-43 Score=359.17 Aligned_cols=252 Identities=39% Similarity=0.626 Sum_probs=232.1
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g 505 (702)
+.|++|+|++.+|+.|++.+..++++++.|.++|.++++|+|||||||||||++++++|++++.+++.++++++.+.|+|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCC
Q 045279 506 ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRP 585 (702)
Q Consensus 506 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~ 585 (702)
+++..++.+|..|+...||||||||+|.+.++|....++....+++.++..+++.....+++||+|||+++.+|++++||
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~ 160 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 160 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTST
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhc
Confidence 99999999999999999999999999999998877777777889999999999998889999999999999999999999
Q ss_pred CccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---
Q 045279 586 GRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSD--- 662 (702)
Q Consensus 586 gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~--- 662 (702)
||||..|+|++|+.++|..||+.++++.....+.+++.+| ..|+||+|+||+++|++|++.|+++..........
T Consensus 161 gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la--~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~ 238 (258)
T d1e32a2 161 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238 (258)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHH--HHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCB
T ss_pred ccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhh--hcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 9999999999999999999999999998888889999999 67999999999999999999999987643321111
Q ss_pred ---CCCccccHHHHHHHHhh
Q 045279 663 ---VTPFTIKLTHFEQALSK 679 (702)
Q Consensus 663 ---~~~~~i~~~d~~~al~~ 679 (702)
.....|+++||+.||++
T Consensus 239 ~~~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 239 AEVMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp HHHHHHCCBCHHHHHHHHTC
T ss_pred hhhhccCccCHHHHHHHhCc
Confidence 11246899999999974
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.5e-41 Score=339.04 Aligned_cols=231 Identities=48% Similarity=0.925 Sum_probs=206.7
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
+|+++|++|+|++++++.|.+.+..++.+++.+.+.|..+++|+|||||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|.|.++..++.+|..|+...||||||||+|.++..|+.. ......++++.|+..|++.....+++||+|||.++.||
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence 999999999999999999999999999999999877433 23455678999999999887778899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
++++|||||+..|+|++|+.++|.+||+.++++.....+.+++.++ ..|+||+|+||.++|++|+..|+++...
T Consensus 161 ~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la--~~t~g~s~~di~~lv~~A~~~A~~~~~~ 234 (265)
T d1r7ra3 161 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIE 234 (265)
T ss_dssp CGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHH--HHHCSSCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888889999999 6789999999999999999999987654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-40 Score=332.61 Aligned_cols=257 Identities=47% Similarity=0.752 Sum_probs=226.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSG 200 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g 200 (702)
++|+||+|++.+|++|.+.+..|+.+|+.+..+|+++++++|||||||||||++++++|++++.+++.++++.+.+.+.|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 201 ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 201 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
.....+..+|..|....|+||||||+|.++.++....++...+++..++..++... ...+|+|
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~vlv 143 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------------QRAHVIV 143 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------------CSSCEEE
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhcccccccc-----------------ccCCccE
Confidence 99999999999999999999999999999988766555666777788887776543 2445999
Q ss_pred EEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 045279 281 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAM 360 (702)
Q Consensus 281 I~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~ 360 (702)
|||||.++.+||+++|+|||+++|+|+.|+.++|.+||+.++++.....+.++..+++.|+||+++||.++|++|...++
T Consensus 144 i~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~ 223 (258)
T d1e32a2 144 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI 223 (258)
T ss_dssp EEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999888
Q ss_pred HHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHh
Q 045279 361 KRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATK 409 (702)
Q Consensus 361 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~ 409 (702)
++....... . ......+......++++||..|+.
T Consensus 224 ~~~~~~~~~--~-------------~~~~~~~~~~~~~it~~Df~~AL~ 257 (258)
T d1e32a2 224 RKKMDLIDL--E-------------DETIDAEVMNSLAVTMDDFRWALS 257 (258)
T ss_dssp HHHHHHHCC--C-------------SSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred Hhhccccch--h-------------hhhhhhhhhccCccCHHHHHHHhC
Confidence 775433210 0 011122334567799999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.9e-40 Score=327.32 Aligned_cols=227 Identities=44% Similarity=0.661 Sum_probs=202.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+.|.++|+||+|++++|++|.+.+ .++.+|+.+..+|.+.++++||+||||||||++|++||++++.+++.++++++.+
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i-~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 357789999999999999998755 6788999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|+++..+..+|+.|....|+||||||+|.++.+++.. .+....+++..|+..|+++..
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~---------------- 144 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------------- 144 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT----------------
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC----------------
Confidence 9999999999999999999999999999999998776443 234456788999999986532
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+|+||||||.++.+|++++|+|||+.+|+|+.|+.++|.+||+.+++......+.++..+++.|+||+++||.++|+
T Consensus 145 -~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~ 223 (247)
T d1ixza_ 145 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 223 (247)
T ss_dssp -TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
.|...+++
T Consensus 224 ~A~l~a~~ 231 (247)
T d1ixza_ 224 EAALLAAR 231 (247)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-39 Score=326.68 Aligned_cols=244 Identities=41% Similarity=0.655 Sum_probs=212.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...+||+||+|++++|++|.+.+ .++.+++.+..+|.+.++++||+||||||||++|++||++++.+++.++++++.+.
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v-~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~ 84 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHHhchHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence 45779999999999999999876 56889999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|.|+++..+..+|+.|....|+||||||+|.++..++.. ......+++..|+..+++...
T Consensus 85 ~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~----------------- 147 (256)
T d1lv7a_ 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----------------- 147 (256)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-----------------
T ss_pred chhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC-----------------
Confidence 999999999999999999999999999999998776443 224556788999999986532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
..+|+||||||.++.+||+++|+|||+..|+|++|+.++|.+||+.++++..+..+.++..+++.|+||+++||..+|++
T Consensus 148 ~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~ 227 (256)
T d1lv7a_ 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (256)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHH
Confidence 23499999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|...+.++ ....++..||.+|++.+
T Consensus 228 A~~~a~~~--------------------------------~~~~i~~~d~~~Al~rv 252 (256)
T d1lv7a_ 228 AALFAARG--------------------------------NKRVVSMVEFEKAKDKI 252 (256)
T ss_dssp HHHHHHHT--------------------------------TCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHc--------------------------------CCCccCHHHHHHHHHHH
Confidence 97766542 11357889999988764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-37 Score=311.28 Aligned_cols=229 Identities=42% Similarity=0.689 Sum_probs=201.8
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
|.++|+||+|++++|++|.+.+..|+.+|+.+..+|+.+++++|||||||||||++|+++|++++.+++.++++++.+.+
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~ 81 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 81 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.|..+..++.+|..|....|+||||||+|.++..+... ......+++..|+..+++... .
T Consensus 82 ~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----------------~ 144 (265)
T d1r7ra3 82 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------------K 144 (265)
T ss_dssp TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC----------------------
T ss_pred ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCC-----------------C
Confidence 99999999999999999999999999999999765432 233456678888888875432 2
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+|+||||||.++.|||+++|+|||+.+|+|+.|+.++|.+||+.++++.....+.++..+++.|+||+++||..+|++|
T Consensus 145 ~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A 224 (265)
T d1r7ra3 145 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 224 (265)
T ss_dssp -CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999988777788999999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 356 GNLAMKRII 364 (702)
Q Consensus 356 ~~~a~~r~~ 364 (702)
...+.++.+
T Consensus 225 ~~~A~~~~~ 233 (265)
T d1r7ra3 225 CKLAIRESI 233 (265)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 988877644
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.93 E-value=1.4e-28 Score=250.85 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=134.4
Q ss_pred hChHHHHHcCCCCCcceEE-EcCCCCChhHHHHHHHHHhC--CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEE
Q 045279 450 KFPEEYEEFGVDLETGFLL-YGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 450 ~~~~~~~~~~~~~~~~~ll-~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl 526 (702)
..+..+..++...++|++| |||||||||.+|+++|.+++ .+|+.+++++++++|+|+++..++.+|+.|+. ||||
T Consensus 109 ~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~il 186 (321)
T d1w44a_ 109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVI 186 (321)
T ss_dssp BCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSEE
T ss_pred cchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccEE
Confidence 4555666667777777655 89999999999999999985 78999999999999999999999999999975 7899
Q ss_pred EEeCcchhhcccCCCCc-hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC---CccCccccCCCccceEEEcCCCCHHHH
Q 045279 527 FFDEVDALTTKRGKEGG-WVVERLLNQLLIELDGADKRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
||||||.+.+.|+.+.. ....+++++||.+||++....+++||+|||+. +.++++++||||||..++++.|+.+.|
T Consensus 187 f~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r 266 (321)
T d1w44a_ 187 VIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGE 266 (321)
T ss_dssp EEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTE
T ss_pred EeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHH
Confidence 99999999999965543 33468999999999999888899999999963 357777789999999999999999999
Q ss_pred HHHHHHHhccCC
Q 045279 603 GLILEALARKKP 614 (702)
Q Consensus 603 ~~il~~~~~~~~ 614 (702)
.+|+..+.+...
T Consensus 267 ~~il~~~~~~~~ 278 (321)
T d1w44a_ 267 WQVLTRTGEGLQ 278 (321)
T ss_dssp EEEEEECBTTCC
T ss_pred HHHHHHhccCcc
Confidence 999877665543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.91 E-value=3.3e-24 Score=221.33 Aligned_cols=244 Identities=19% Similarity=0.218 Sum_probs=174.8
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc--ccCcCc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL--NKYVGE 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~--~~~~g~ 506 (702)
.++|++++++.+..++..++++..+.... ...++.|+||+||||||||++|+++|+.++.+|+.++++++. +.|.|.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 47999999999998887665544332221 123678999999999999999999999999999999999997 447899
Q ss_pred hHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHH-HHHHHHHHhhhCCC--------CCCcEEEEEe-
Q 045279 507 SELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVE-RLLNQLLIELDGAD--------KRKGVFVIGA- 571 (702)
Q Consensus 507 ~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~-~~~~~ll~~l~~~~--------~~~~~~vI~a- 571 (702)
++..++.+|..|.. ..||||||||+|++++.+.....+... .+++.||..|++.. ...++++|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~g 174 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 174 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEecc
Confidence 99999999998864 357999999999999988776666554 47899999999842 2345666765
Q ss_pred ---cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc-----------cCCCCCCCC---HH-----HHhhhhc
Q 045279 572 ---TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR-----------KKPIDDSVD---LH-----TIAQSKF 629 (702)
Q Consensus 572 ---tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~-----------~~~~~~~~~---~~-----~la~~~~ 629 (702)
++++..++|+++. ||+.++.|++|+..++.+|++.+.. ......... .. .......
T Consensus 175 a~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (309)
T d1ofha_ 175 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 252 (309)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred chhhcCcccchhhhhh--hhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHhhc
Confidence 4678888998886 9999999999999999999754321 111111111 01 1111123
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 630 CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 630 ~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+..+..+.|++++.+......-... ........|+...+..++.++
T Consensus 253 ~~~~GaR~L~~~ie~i~~~~~~~~~-----~~~~~~v~i~~~~v~~~l~~~ 298 (309)
T d1ofha_ 253 TENIGARRLHTVMERLMDKISFSAS-----DMNGQTVNIDAAYVADALGEV 298 (309)
T ss_dssp SCCCTTHHHHHHHHHHSHHHHHHGG-----GCTTCEEEECHHHHHHHTCSS
T ss_pred chhcCchHHHHHHHHHHHHHHcccc-----ccCCCEEEECHHHHHHhcCCc
Confidence 4567778888888765433322211 122234467888888877654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.89 E-value=2.9e-23 Score=206.57 Aligned_cols=162 Identities=25% Similarity=0.343 Sum_probs=125.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCch-HHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES-ELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
...+++++|||||||||||++|+++|++++.+|+.+++++++..+.+.+ ...++.+|+.|+..+||||||||+|.+.+.
T Consensus 36 ~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~ 115 (246)
T d1d2na_ 36 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 115 (246)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhh
Confidence 4467889999999999999999999999999999999998877776655 366899999999999999999999999887
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCC-CCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
+..+.. ....++++|+..|++... ..+++||+|||+++.+|++.++ +||+..|++|.+. +|.+|++.+.....+
T Consensus 116 ~~~~~~-~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~~~--~r~~il~~l~~~~~~- 190 (246)
T d1d2na_ 116 VPIGPR-FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIA--TGEQLLEALELLGNF- 190 (246)
T ss_dssp BTTTTB-CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEE--EHHHHHHHHHHHTCS-
T ss_pred cccccc-hhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhc-CccceEEecCCch--hHHHHHHHHHhccCC-
Confidence 654332 236788899999998743 4578999999999999876443 5999999986654 333444443332222
Q ss_pred CCCCHHHHh
Q 045279 617 DSVDLHTIA 625 (702)
Q Consensus 617 ~~~~~~~la 625 (702)
.+.+...++
T Consensus 191 ~~~~~~~i~ 199 (246)
T d1d2na_ 191 KDKERTTIA 199 (246)
T ss_dssp CHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 233445555
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.88 E-value=1.7e-25 Score=227.78 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=132.7
Q ss_pred hccCCCcccccCCCCCceEE-EECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhcccccccHHHHHHHHHHHHhhCCc
Q 045279 143 PLYHPQLPQWLGVRPMAGIL-LYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPS 219 (702)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~vL-l~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~ 219 (702)
+...|.+++.++.+.+++++ |+||||||||++|++||.+++ .+|+.++++++.+.|.|+++.+++.+|+.|.. |+
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ 184 (321)
T d1w44a_ 107 VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HR 184 (321)
T ss_dssp CSBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CS
T ss_pred cccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--cc
Confidence 44567778888877666655 589999999999999999986 68999999999999999999999999999974 78
Q ss_pred eEEechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCcccc
Q 045279 220 IVFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALR 295 (702)
Q Consensus 220 il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~ 295 (702)
||||||||.+.+.++... .....+.+++||..||++.. ..+|+||||||+. +.+++++.
T Consensus 185 ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~-----------------~~~v~viaatN~~~~~~~i~~~~~ 247 (321)
T d1w44a_ 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAA-----------------SRGCVVIASLNPTSNDDKIVELVK 247 (321)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHH-----------------HHTCEEEEECCCCCCCHHHHHHHH
T ss_pred EEEeehhhhhccccccCCCCCcchhhhhhhhhhcccccc-----------------CCCeEEEEeCCCcccccchhhhhh
Confidence 999999999998886543 34446899999999997754 3349999999963 24666778
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhcCcc
Q 045279 296 RPGRFDREIVLGVPDENARVQILSVLTRNLR 326 (702)
Q Consensus 296 r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~ 326 (702)
|+|||++.+.++.|+.+.|.+|+..+...+.
T Consensus 248 r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~~ 278 (321)
T d1w44a_ 248 EASRSNSTSLVISTDVDGEWQVLTRTGEGLQ 278 (321)
T ss_dssp HHHHHSCSEEEEECSSTTEEEEEEECBTTCC
T ss_pred ccCcccceeecCCCChHHHHHHHHHhccCcc
Confidence 9999999999999999999999987766553
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.87 E-value=8.9e-23 Score=203.02 Aligned_cols=197 Identities=21% Similarity=0.314 Sum_probs=136.2
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccccc
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS 202 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~ 202 (702)
.+.|+|..+.++.+.+.+....... ......++.+|||+||||||||++|++||++++.+|+.++++++..++.+..
T Consensus 8 ~~~~i~~~~~i~~i~~~~~~~~~~~---~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~ 84 (246)
T d1d2na_ 8 MNGIIKWGDPVTRVLDDGELLVQQT---KNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 84 (246)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHH---HHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred ccCCcCcCHHHHHHHHHHHHHHHHH---hccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccc
Confidence 4556665555555554443322111 0112346689999999999999999999999999999999998877776655
Q ss_pred H-HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 203 E-ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 203 ~-~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
. ..++.+|+.|....|+||||||||.+...+.... ....++++.|+..+++... ...+|+||
T Consensus 85 ~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~----------------~~~~v~vi 147 (246)
T d1d2na_ 85 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPP----------------QGRKLLII 147 (246)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCS----------------TTCEEEEE
T ss_pred hhhhhhhhhhhhhhcccceeehhhhhhHhhhccccc-chhHHHHHHHHHHhcCCCc----------------cccceeee
Confidence 3 5688999999999999999999999987654432 2235677788888775321 23459999
Q ss_pred EecCCCCCCCcc-ccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCC
Q 045279 282 GATNRPDAVDPA-LRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344 (702)
Q Consensus 282 ~atn~~~~ld~a-l~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~ 344 (702)
||||.++.+|++ +++ ||+..|++|.+ .+|.+|++.+..... ....+...++..+.|..
T Consensus 148 ~tTn~~~~ld~~~~~~--rF~~~i~~P~~--~~r~~il~~l~~~~~-~~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 148 GTTSRKDVLQEMEMLN--AFSTTIHVPNI--ATGEQLLEALELLGN-FKDKERTTIAQQVKGKK 206 (246)
T ss_dssp EEESCHHHHHHTTCTT--TSSEEEECCCE--EEHHHHHHHHHHHTC-SCHHHHHHHHHHHTTSE
T ss_pred eccCChhhccchhhcC--ccceEEecCCc--hhHHHHHHHHHhccC-CChHHHHHHHHHcCCCc
Confidence 999999999875 545 99988887544 444455544322211 22334566666666643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1e-20 Score=188.09 Aligned_cols=213 Identities=19% Similarity=0.227 Sum_probs=156.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+.+|++++|++.+++.+..++.... ....+..++|||||||||||++|+++|++++.++..+++++...
T Consensus 5 P~~~~divGqe~~~~~l~~~i~~~~--------~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~--- 73 (238)
T d1in4a2 5 PKSLDEFIGQENVKKKLSLALEAAK--------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 73 (238)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH--------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CCcHHHcCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc---
Confidence 4579999999999999998876542 11244568999999999999999999999999999998877643
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
...+...+.. ....+++||||+|.+. ....+.++..++... ...++++
T Consensus 74 ---~~~~~~~~~~--~~~~~~~~ide~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (238)
T d1in4a2 74 ---QGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 137 (238)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHh--hccCCchHHHHHHHhh-----------hHHHhhcccceeeeeeeeeecCcccccccccCCCCeEE
Confidence 2334444443 2356899999999997 444455555444321 2346899
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||.+..+++++++ ||...+.|+.|+.+++..+++......+...+.+ ++.++ ..+ +.+.+.+.++++.+..
T Consensus 138 I~at~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~--~~s-~gd~R~ai~~l~~~~~ 212 (238)
T d1in4a2 138 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIA--KRS-RGTPRIAIRLTKRVRD 212 (238)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HTS-TTCHHHHHHHHHHHHH
T ss_pred EEecCCCcccccccee--eeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHH--HhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999999988877664433 55666 222 3355666666665554
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.+..... ..|+.+++.+|+..+
T Consensus 213 ~~~~~~~-----------~~it~~~~~~al~~l 234 (238)
T d1in4a2 213 MLTVVKA-----------DRINTDIVLKTMEVL 234 (238)
T ss_dssp HHHHHTC-----------SSBCHHHHHHHHHHH
T ss_pred HHHHhcC-----------CccCHHHHHHHHHhh
Confidence 4433321 268999999998764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=3.3e-23 Score=217.95 Aligned_cols=219 Identities=21% Similarity=0.336 Sum_probs=150.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
.++.++|.+..++++.+.+ ..+.++|+||+||||+|||++++.+|..+ +..++.++.
T Consensus 20 ~ld~~~gr~~ei~~~~~~L-------------~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~ 86 (387)
T d1qvra2 20 KLDPVIGRDEEIRRVIQIL-------------LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 86 (387)
T ss_dssp CSCCCCSCHHHHHHHHHHH-------------HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCCCcCcHHHHHHHHHHH-------------hcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 6899999999999999877 44667889999999999999999999875 467999999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.++ |.|+++.++..++..+.... +.||||||+|.+.+.+...+......++.+.|.
T Consensus 87 ~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~------------------ 148 (387)
T d1qvra2 87 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA------------------ 148 (387)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH------------------
T ss_pred hhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh------------------
Confidence 999976 67999999999999987764 678999999999876544333333344444433
Q ss_pred CCCCCCCCeEEEEEecCCCC----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~ 344 (702)
+|.+.|||+|++-+ .-|++|.| || ..|.+..|+.++...|++.....+..++.+.+..
T Consensus 149 ------rg~~~~I~~tT~~ey~~~e~d~al~r--rF-~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~--------- 210 (387)
T d1qvra2 149 ------RGELRLIGATTLDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEVHHGVRISD--------- 210 (387)
T ss_dssp ------TTCCCEEEEECHHHHHHHTTCTTTCS--CC-CCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECH---------
T ss_pred ------CCCcceeeecCHHHHHHhcccHHHHH--hc-ccccCCCCcHHHHHHHHHHHHHHHHhccCCcccH---------
Confidence 46699999998733 45999999 99 6799999999999999998887776665554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhh
Q 045279 345 GADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEM 394 (702)
Q Consensus 345 ~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (702)
..+..|+.++.+++.++..|+++.+.+++++++........|...
T Consensus 211 -----~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a~~~i~~~s~P~el 255 (387)
T d1qvra2 211 -----SAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEI 255 (387)
T ss_dssp -----HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred -----HHHHHHHHhcccccccccChhhHHHHHHHHHHHHHhhccCCcHHH
Confidence 225556666667777777777777777777776655555444433
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=2.9e-21 Score=199.06 Aligned_cols=186 Identities=27% Similarity=0.346 Sum_probs=143.7
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--cccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~ 201 (702)
.|+|++++|+.|...+..++.+..+..... -.++.++||+||||||||+||++||+.++.+++.++++.+... +.|.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 379999999999988876666665543321 2367899999999999999999999999999999999999744 7788
Q ss_pred cHHHHHHHHHHHHh-----hCCceEEechhhHhhhcchhhhHHH-HHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 202 SEENIRDLFSKAYR-----TAPSIVFIDEIDAIASKRENLQREM-ERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 202 ~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.+..++.+|..+.. ..|+||||||||++.+.+.....+. ...+++.||..+++....+... .. ..
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~------~i---~~ 165 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG------MV---KT 165 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE------EE---EC
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCe------EE---Ec
Confidence 88889999998754 2478999999999998766543333 3457788999998643211100 00 01
Q ss_pred CeEEEEEe----cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 276 GYVLVIGA----TNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 276 ~~v~vI~a----tn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.++++|++ ++.+..++|+++. ||+.++.++.|+..++.+|+...
T Consensus 166 s~ilfi~~ga~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~~~~Il~~~ 213 (309)
T d1ofha_ 166 DHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 213 (309)
T ss_dssp TTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred cceeEEeccchhhcCcccchhhhhh--hhheeeeccCCCHHHHHHHHHHH
Confidence 23667766 5667889999987 99999999999999999998654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.9e-21 Score=193.35 Aligned_cols=206 Identities=27% Similarity=0.333 Sum_probs=149.0
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
.++.++|.++.++++.+.+ ..+..+|+||+||||+|||++++.+|+.+ +..++.++.
T Consensus 16 ~ld~~igRd~Ei~~l~~iL-------------~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~ 82 (268)
T d1r6bx2 16 GIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 82 (268)
T ss_dssp CSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCcccChHHHHHHHHHHH-------------hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence 6889999999999999877 44567899999999999999999999874 567999999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH-HHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR-EMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.++ |.|+.+.++..++..+....+.||||||+|.+.+..+..++ ..... ++...-
T Consensus 83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~----~Lkp~L--------------- 143 (268)
T d1r6bx2 83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAAN----LIKPLL--------------- 143 (268)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHH----HHSSCS---------------
T ss_pred chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHH----HhhHHH---------------
Confidence 999975 78999999999999998888889999999999876543322 11112 222111
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 343 (702)
..|.+.|||+|++.+ .-|++|.| || ..|.+..|+.++...|+......+...+...+.
T Consensus 144 -----~rg~i~vIgatT~eey~~~~e~d~al~r--rF-~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~--------- 206 (268)
T d1r6bx2 144 -----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYT--------- 206 (268)
T ss_dssp -----SSCCCEEEEEECHHHHHCCCCCTTSSGG--GE-EEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC---------
T ss_pred -----hCCCCeEEEeCCHHHHHHHHhhcHHHHh--hh-cccccCCCCHHHHHHHHHHhhHHHhccCCEEeC---------
Confidence 256799999998733 67999999 99 779999999999999998876555433322221
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccC
Q 045279 344 VGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHS 381 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~ 381 (702)
...+..++.++.+++.++..|+++.+.++++++
T Consensus 207 -----~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a 239 (268)
T d1r6bx2 207 -----AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 239 (268)
T ss_dssp -----HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHH
Confidence 112344444555555555555555555554443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.5e-19 Score=179.58 Aligned_cols=205 Identities=22% Similarity=0.295 Sum_probs=142.9
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|+||+|++++++.|..++...... -....++|||||||||||++|+++|++++.+++.+++....
T Consensus 7 ~~~divGqe~~~~~l~~~i~~~~~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~------ 72 (238)
T d1in4a2 7 SLDEFIGQENVKKKLSLALEAAKMR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------ 72 (238)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------
T ss_pred cHHHcCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccc------
Confidence 8999999999999999888654322 23346899999999999999999999999999998877653
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
....+...+... ...+++||||+|.+....+ +.++..++........+..... ........++++|
T Consensus 73 ~~~~~~~~~~~~--~~~~~~~ide~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I 138 (238)
T d1in4a2 73 KQGDMAAILTSL--ERGDVLFIDEIHRLNKAVE-----------ELLYSAIEDFQIDIMIGKGPSA-KSIRIDIQPFTLV 138 (238)
T ss_dssp SHHHHHHHHHHC--CTTCEEEEETGGGCCHHHH-----------HHHHHHHHTSCCCC----------------CCCEEE
T ss_pred cHHHHHHHHHhh--ccCCchHHHHHHHhhhHHH-----------hhcccceeeeeeeeeecCcccc-cccccCCCCeEEE
Confidence 223444444433 3457999999998864332 2244444432211110000000 0000112348999
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
++||.+..+++++++ ||...+.++.|+.+++..++...+.........+ +..+++.+.| ++|.+.++++.+..
T Consensus 139 ~at~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~ 212 (238)
T d1in4a2 139 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 212 (238)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EecCCCcccccccee--eeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999998887776655444 6667766655 77777777766543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=1.4e-19 Score=179.88 Aligned_cols=214 Identities=22% Similarity=0.281 Sum_probs=149.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+.+|++++|++++++.+..++.... .+..++.++|||||||||||++|+++|++++.++..++++.... .
T Consensus 5 P~~~ddivGq~~~~~~L~~~i~~~~--------~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~--~ 74 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYLEAAK--------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--P 74 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHHT--------TSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS--H
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc--c
Confidence 4589999999999999988776542 12345678999999999999999999999999999999877543 1
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC----------------CCCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA----------------DKRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~----------------~~~~~~~v 568 (702)
+... ....... ...+|+||||+|.+. ......++..|+.. ....++++
T Consensus 75 ~~~~----~~~~~~~-~~~~i~~iDe~~~~~-----------~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (239)
T d1ixsb2 75 GDLA----AILANSL-EEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 138 (239)
T ss_dssp HHHH----HHHHTTC-CTTCEEEEETGGGCC-----------HHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEE
T ss_pred hhhH----HHHHhhc-cCCCeeeeecccccc-----------hhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEE
Confidence 2211 2222222 245799999999987 44445555544321 12346778
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||.+....++.++ |+...+.|..|+.+++..++...+....+..+ ..++.++ ..+.| +.+.+.++++.+..
T Consensus 139 i~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia--~~s~g-d~R~a~~~l~~~~~ 213 (239)
T d1ixsb2 139 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIG--RRSRG-TMRVAKRLFRRVRD 213 (239)
T ss_dssp EEEESCCSSCSCGGGG--GCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHH--HHTTS-SHHHHHHHHHHHHH
T ss_pred EeeccCcccccchhhc--ccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHH--HHcCC-CHHHHHHHHHHHHH
Confidence 8899999888888888 88889999999999999999998887766543 2355566 33333 33444444443322
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.+. ......|+.+++.+|+..+
T Consensus 214 ~a~-----------~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 214 FAQ-----------VAGEEVITRERALEALAAL 235 (239)
T ss_dssp HHT-----------TSCCSCBCHHHHHHHHHHH
T ss_pred HHH-----------HhCCCCcCHHHHHHHHhhh
Confidence 111 0122369999999999755
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=7.2e-20 Score=171.73 Aligned_cols=157 Identities=22% Similarity=0.387 Sum_probs=123.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
.++.++|.++.++++.+.+ ..+..+|++|+||||+|||++++.+|+.+ +.+++.++.
T Consensus 20 ~ld~~igRd~Ei~~l~~iL-------------~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~ 86 (195)
T d1jbka_ 20 KLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCCCcCcHHHHHHHHHHH-------------hccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 6889999999999999877 45667899999999999999999999875 578999999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.++ |.|+++.+++.++..+.... +.||||||+|.+.+............++.+. |.
T Consensus 87 ~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~---L~--------------- 148 (195)
T d1jbka_ 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LA--------------- 148 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HH---------------
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHH---Hh---------------
Confidence 999976 66899999999999876554 6799999999998765432221122333333 33
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQIL 318 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il 318 (702)
+|.+.|||+|++.+ +-|++|.| || ..|.+..|+.++...|+
T Consensus 149 ------rg~l~~IgatT~eey~~~~e~d~aL~r--rF-~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 149 ------RGELHCVGATTLDEYRQYIEKDAALER--RF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ------TTSCCEEEEECHHHHHHHTTTCHHHHT--TE-EEEECCCCCHHHHHTTC
T ss_pred ------CCCceEEecCCHHHHHHHHHcCHHHHh--cC-CEeecCCCCHHHHHHHh
Confidence 35689999998743 67999999 99 77999999999988775
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=3.4e-18 Score=169.69 Aligned_cols=206 Identities=24% Similarity=0.316 Sum_probs=138.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|+|++|+++++++|..++...... -....++||+||||||||++|+++|++++.++..++++....
T Consensus 5 P~~~ddivGq~~~~~~L~~~i~~~~~~--------~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~--- 73 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 73 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHHTTS--------SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc---
Confidence 348999999999999999887554321 234578999999999999999999999999999998876532
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
.......+... ....+++||||+|.+....+ ..++..++........+.......... ...+++
T Consensus 74 ---~~~~~~~~~~~-~~~~~i~~iDe~~~~~~~~~-----------~~l~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~ 137 (239)
T d1ixsb2 74 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQAE-----------EHLYPAMEDFVMDIVIGQGPAARTIRL-ELPRFT 137 (239)
T ss_dssp ---HHHHHHHHHTT-CCTTCEEEEETGGGCCHHHH-----------HHHHHHHHHSEEEEECSCTTCCCEEEE-ECCCCE
T ss_pred ---chhhHHHHHhh-ccCCCeeeeecccccchhHH-----------Hhhhhhhhhhhhhhhhccchhhhhccc-CCCCEE
Confidence 11112222221 12356999999998864332 234555544221111111110011111 123478
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+|++||.+...+++.++ |+...+.+..|+.+++..++...+....+.... .+..++..+.| ..|...++++.+
T Consensus 138 ~i~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~ 211 (239)
T d1ixsb2 138 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 211 (239)
T ss_dssp EEEEESCCSSCSCGGGG--GCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred EEeeccCcccccchhhc--ccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 88889888888877777 777889999999999999999888877665443 46678888877 555555555443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=8.3e-18 Score=173.00 Aligned_cols=208 Identities=16% Similarity=0.247 Sum_probs=155.4
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc------
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK------ 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~------ 502 (702)
..++|++.+++.+...+........ -...|...+||+||||||||.+|++||..++.+|+.++++++...
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~----~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l 97 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 97 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS----CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSS
T ss_pred CeecChHHHHHHHHHHHHHHHccCC----CCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhh
Confidence 4589999999999887754421100 011334468999999999999999999999999999999987542
Q ss_pred ------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEE
Q 045279 503 ------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVF 567 (702)
Q Consensus 503 ------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~ 567 (702)
|+|..... .+.......+.+|++|||+|..+ ..+++.||+.++.. ....+.+
T Consensus 98 ~g~~~gy~g~~~~~--~l~~~~~~~~~~vvl~DeieKa~-----------~~V~~~lLqild~G~ltd~~Gr~vdf~n~i 164 (315)
T d1r6bx3 98 IGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFRNVV 164 (315)
T ss_dssp CCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred cccCCCccccccCC--hhhHHHHhCccchhhhccccccc-----------chHhhhhHHhhccceecCCCCCccCccceE
Confidence 33332222 24455566788999999999998 78999999988752 2457899
Q ss_pred EEEecCCC-------------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-------CC
Q 045279 568 VIGATNRP-------------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK-------PI 615 (702)
Q Consensus 568 vI~atn~~-------------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~ 615 (702)
+|+|||-. ..+.|.|+. |||.++.|.+++.++..+|+..++.+. ..
T Consensus 165 iI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i 242 (315)
T d1r6bx3 165 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 242 (315)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999942 147778887 999999999999999998887765532 21
Q ss_pred C---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 616 D---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 616 ~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
. .+..++.++...+...|.++.|+++++.-....+.+.+.
T Consensus 243 ~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~~il 285 (315)
T d1r6bx3 243 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 285 (315)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 1 233456777766778889999999999888777776553
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=9.3e-18 Score=172.24 Aligned_cols=209 Identities=22% Similarity=0.259 Sum_probs=153.8
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc----
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN---- 501 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---- 501 (702)
..+.|++.+++.+...+....... ....+|...++|+||||||||.+|+.+|..+ +.+|+.++++++..
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~l----~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~ 98 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 98 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGC----SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhh
Confidence 447899999988877765442100 0112333468899999999999999999987 77999999988764
Q ss_pred --------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCC
Q 045279 502 --------KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRK 564 (702)
Q Consensus 502 --------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~ 564 (702)
.|+|..+.. .+.+..+.++.+|+||||+|+.. ..+++.|++.++.. ....
T Consensus 99 ~~L~g~~~gyvG~~~~~--~l~~~~~~~p~~Vvl~DEieK~~-----------~~v~~~ll~~l~~g~~~~~~gr~v~~~ 165 (315)
T d1qvra3 99 SRLIGAPPGYVGYEEGG--QLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDFR 165 (315)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred hhhcCCCCCCcCcccCC--hHHHHHHhCCCcEEEEehHhhcC-----------HHHHHHHHHHhccCceeCCCCcEecCc
Confidence 255554332 35566667788999999999998 78899999988762 2346
Q ss_pred cEEEEEecCC--------------------------CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc------
Q 045279 565 GVFVIGATNR--------------------------PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK------ 612 (702)
Q Consensus 565 ~~~vI~atn~--------------------------~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~------ 612 (702)
++++|+|||. ...+.|.|+. |||.++.|.+.+.++..+|+...+.+
T Consensus 166 ~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~ 243 (315)
T d1qvra3 166 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 243 (315)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHHHHHHHHHH
Confidence 7999999995 2468888888 99999999999999999888765443
Q ss_pred -CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 613 -KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 613 -~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+. .+..++.|+...+...|.++.|++++++.....+.+.+..
T Consensus 244 ~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~~iL~ 291 (315)
T d1qvra3 244 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 291 (315)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHH
T ss_pred hccccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 2221 2234677887777889999999999999998888776543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.5e-17 Score=164.80 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=144.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|.+.+++.|..++.. ...+.++||+||||||||++|+++++.+..
T Consensus 8 P~~~~dlig~~~~~~~L~~~i~~------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~ 75 (239)
T d1njfa_ 8 PQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 75 (239)
T ss_dssp CSSGGGSCSCHHHHHHHHHHHHT------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCCHHHccChHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHH
Confidence 35789999999999988776532 234567999999999999999999998732
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.++.++. .....++.+++.+.. ....|+||||+|.+. ...++.|+..
T Consensus 76 ~~i~~~~~~~~~~~~~~~~------~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~-----------~~~q~~Llk~ 138 (239)
T d1njfa_ 76 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 138 (239)
T ss_dssp HHHHHTCCTTEEEEETTCS------SSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHHcCCCCeEEEecchhc------CCHHHHHHHHHHHHhccccCCCEEEEEECcccCC-----------HHHHHHHHHH
Confidence 2344444322 123346666665532 244699999999998 7888999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
|+.. ..++.+|++||.++.+.+++.+ || ..+.|+.|+.++...++...+...+... +..++.++. +++
T Consensus 139 lE~~--~~~~~~il~tn~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~------~s~ 207 (239)
T d1njfa_ 139 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR------AAE 207 (239)
T ss_dssp HHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH------HTT
T ss_pred HhcC--CCCeEEEEEcCCccccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHH------HcC
Confidence 9854 4567888899999999999988 99 5899999999999988888877655432 233555652 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+|+|.+++..- .++.... ..|+.+++.++|
T Consensus 208 Gd~R~ain~l~-~~~~~~~-----------~~I~~~~v~~~l 237 (239)
T d1njfa_ 208 GSLRDALSLTD-QAIASGD-----------GQVSTQAVSAML 237 (239)
T ss_dssp TCHHHHHHHHH-HHHHHTT-----------TSBCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHhCC-----------CCcCHHHHHHHh
Confidence 67777776332 2222211 269999998887
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.70 E-value=2.7e-17 Score=162.16 Aligned_cols=178 Identities=24% Similarity=0.271 Sum_probs=128.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhhhc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEVVS 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l~~ 196 (702)
+|+||+|++++++.|..++.. ....++||+||||||||++|+++|++++ ..++.+++++...
T Consensus 22 ~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~ 88 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 88 (231)
T ss_dssp STTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred CHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccc
Confidence 899999999999999988743 1235799999999999999999999874 4677888776432
Q ss_pred ccccccHHHHHHHHHHHH------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAY------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
. ..+...+.... ...+.|+++||+|.+....+ ..|+..++..
T Consensus 89 ~------~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~-----------~~ll~~l~~~--------------- 136 (231)
T d1iqpa2 89 I------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ-----------QALRRTMEMF--------------- 136 (231)
T ss_dssp H------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH-----------HHHHHHHHHT---------------
T ss_pred h------hHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHH-----------HHHhhhcccC---------------
Confidence 1 11111122111 23467999999998875432 2355556542
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHH
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLA 349 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~ 349 (702)
+.++.+|++||....+++++++ |+ ..+.++.|+..+...+++..+....+... ..+..+++.+.| ..|++.
T Consensus 137 ----~~~~~~i~~~n~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~ai 208 (231)
T d1iqpa2 137 ----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAI 208 (231)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHH
T ss_pred ----CcceEEEeccCChhhchHhHhC--cc-ccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 2348899999999999999999 99 67999999999999999999887766432 346667776655 455444
Q ss_pred HHH
Q 045279 350 ALA 352 (702)
Q Consensus 350 ~l~ 352 (702)
+++
T Consensus 209 ~~L 211 (231)
T d1iqpa2 209 NIL 211 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=2e-17 Score=162.56 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=143.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-----eEEEEecccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-----NFIHIKGPEL 499 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l 499 (702)
+.++++++|.+++++.|..++.. + ...++||+||||||||++|+++|+++.. .++..+.++.
T Consensus 10 P~~~~divg~~~~~~~L~~~i~~-----------~--~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~ 76 (227)
T d1sxjc2 10 PETLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 76 (227)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEeccccc
Confidence 45789999999999888876532 1 2236999999999999999999998742 3566776654
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
.+.............+.........|++|||+|.+. ...++.|+..|+.. ..+++++++||.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~-----------~~~~~~Ll~~le~~--~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 77 RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVLANYAHKLT 143 (227)
T ss_dssp CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred CCeeeeecchhhccccccccCCCeEEEEEeccccch-----------hhHHHHHHHHhhhc--ccceeeccccCcHHHhH
Confidence 332111110000000001112344699999999998 67788888888754 34678888999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
+++.+ |+ ..+.|+.|+.++...++...+...++..+ ..++.++.. +++|+|.+++... ....
T Consensus 144 ~~i~s--r~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~------s~Gd~R~ain~Lq-----~~~~--- 206 (227)
T d1sxjc2 144 PALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIEL------SNGDMRRVLNVLQ-----SCKA--- 206 (227)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHH------HTTCHHHHHHHTT-----TTTT---
T ss_pred HHHHH--HH-hhhccccccccccccccccccccccccCCHHHHHHHHHH------cCCcHHHHHHHHH-----HHHH---
Confidence 99988 88 58899999999999999998887766533 345667732 3357877776222 1111
Q ss_pred CCCCCCCccccHHHHHHHHh
Q 045279 659 SSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~ 678 (702)
.........|+.+++.+++.
T Consensus 207 ~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 207 TLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp TTCSSSCCCBCHHHHHHHTT
T ss_pred hcCCCCCCeeCHHHHHHHhC
Confidence 11222335789999988763
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=2.4e-16 Score=164.49 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=145.7
Q ss_pred ccCCcccchhhhHHHHHHHhhChHH---HH--------------HcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEE---YE--------------EFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~---~~--------------~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
-|+|++++|+.+..++....+.... .. .-...++.++||.||+|||||.+||.||..++.+|+
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i 97 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 97 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence 4899999999988777533222111 11 112457889999999999999999999999999999
Q ss_pred EEeccccccc-CcCc-hHHHHHHHHHH----HHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCC--
Q 045279 493 HIKGPELLNK-YVGE-SELAVRTLFSR----ARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGAD-- 561 (702)
Q Consensus 493 ~i~~~~l~~~-~~g~-~~~~~~~~f~~----a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~-- 561 (702)
.++++.+... |+|. .+..++.++.. ++..+.+|++|||++...+...... ......+++.||+.|++..
T Consensus 98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~ 177 (364)
T d1um8a_ 98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 177 (364)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceec
Confidence 9999998863 6664 33445566544 3455789999999999876432211 1122678999999999621
Q ss_pred ---------CCCcEEEEEecCC-------------------------------------------------CCccCcccc
Q 045279 562 ---------KRKGVFVIGATNR-------------------------------------------------PDVMDRAVL 583 (702)
Q Consensus 562 ---------~~~~~~vI~atn~-------------------------------------------------~~~ld~a~~ 583 (702)
...+.++|.|+|- ...+.|.|+
T Consensus 178 ~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~ 257 (364)
T d1um8a_ 178 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 257 (364)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHH
Confidence 1345666766663 113667777
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHH-----------HhccCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEA-----------LARKKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~-----------~~~~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
. |||.++.|.+.+.++..+|+.. ++...++. .+.-++.||...+..+|.++-|++++++.....
T Consensus 258 g--Ri~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~~l~~~ 335 (364)
T d1um8a_ 258 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 335 (364)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred H--HhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHHHHHHH
Confidence 6 9999999999999999999863 22233332 233467888877888999999999998776554
Q ss_pred H
Q 045279 650 L 650 (702)
Q Consensus 650 ~ 650 (702)
.
T Consensus 336 ~ 336 (364)
T d1um8a_ 336 M 336 (364)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=7e-17 Score=159.14 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=132.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+.+++++.|.+.+++.+..++.. ....++||+||||||||++|+++|+++. .+++++++++
T Consensus 19 ~P~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~ 85 (231)
T d1iqpa2 19 RPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 85 (231)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCc
Confidence 345789999999999988887643 1234799999999999999999999863 4788888876
Q ss_pred ccccCcCchHHHHHHHHHHH------HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSRA------RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a------~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+. ..++..+... ....+.|++|||+|.+. ....+.|+..++.. ..++++|++|
T Consensus 86 ~~~~------~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~-----------~~~~~~ll~~l~~~--~~~~~~i~~~ 146 (231)
T d1iqpa2 86 ERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSC 146 (231)
T ss_dssp HHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred ccch------hHHHHHHHHHHhhhhccCCCceEEeehhhhhcc-----------hhHHHHHhhhcccC--CcceEEEecc
Confidence 5331 1112222221 23467899999999988 66677777777643 4567889999
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
|.+..+++++.+ ||. .+.|++|+..+...+++..+.+.++.- +..++.++.. +++|+|.+++
T Consensus 147 n~~~~i~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~------~~gdiR~ai~ 209 (231)
T d1iqpa2 147 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYI------AEGDMRRAIN 209 (231)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHH------HTTCHHHHHH
T ss_pred CChhhchHhHhC--ccc-cccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHH------cCCCHHHHHH
Confidence 999999999988 884 799999999999999999998877642 3345667632 2346666554
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=4.9e-17 Score=162.50 Aligned_cols=199 Identities=18% Similarity=0.235 Sum_probs=129.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhC-hH---HHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKF-PE---EYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~-~~---~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
+.+|++++|.+..++.|.+++...... +. .....+.....++||+||||||||++|+++|++++.+++.++.++..
T Consensus 10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~ 89 (253)
T d1sxja2 10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 89 (253)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccch
Confidence 457899999999999888876532111 11 11122344567899999999999999999999999999999998765
Q ss_pred ccCcCchHHHHHHH---------H---HH--HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcE
Q 045279 501 NKYVGESELAVRTL---------F---SR--ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV 566 (702)
Q Consensus 501 ~~~~g~~~~~~~~~---------f---~~--a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 566 (702)
+.+.... .+... + .. .....+.++++||+|.+.... ......++...... ...+
T Consensus 90 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~--------~~~~~~~~~~~~~~--~~~i 157 (253)
T d1sxja2 90 SKTLLNA--GVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT--STPL 157 (253)
T ss_dssp CHHHHHH--TGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC--SSCE
T ss_pred hhHHHHH--HHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccch--------hhhhHHHhhhhccc--cccc
Confidence 4321110 00000 0 00 112346799999999987533 22233343333322 2345
Q ss_pred EEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 567 ~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
+++++++....+++ ++ |+...|.|++|+.+++..+++..+.+.++. .+..++.++.. +++|||.+++..
T Consensus 158 i~i~~~~~~~~~~~--l~--~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~------s~GDiR~ai~~L 227 (253)
T d1sxja2 158 ILICNERNLPKMRP--FD--RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT------TRGDIRQVINLL 227 (253)
T ss_dssp EEEESCTTSSTTGG--GT--TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHH------TTTCHHHHHHHH
T ss_pred cccccccccccccc--cc--ceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHh------CCCcHHHHHHHH
Confidence 55555555555654 34 566899999999999999999988765543 23446777732 456999988744
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.66 E-value=7.4e-17 Score=168.07 Aligned_cols=192 Identities=16% Similarity=0.097 Sum_probs=130.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
|.+.+++++||||||||||++|+++|+.++.+|+.+++++..+.| .......+.+.+||+++.....+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~------------~l~~~~~~~~~l~d~~~~~~~~~ 217 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------------ELGVAIDQFLVVFEDVKGTGGES 217 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------------HHGGGTTCSCEEETTCCCSTTTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHH------------HHHhHHHHHHHHHHHHHHhhhhc
Confidence 667778999999999999999999999999999999998865542 11222234455666666555444
Q ss_pred CCCCchHHHHHHHHHHHhhhCCC------CCCc------EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHH-HH
Q 045279 539 GKEGGWVVERLLNQLLIELDGAD------KRKG------VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG-LI 605 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~------~~~~------~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~-~i 605 (702)
........-+.+..|...++|.. .... ..+|+|||. ++.++++|+||+..+++.+|+...+. .+
T Consensus 218 ~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~ 294 (362)
T d1svma_ 218 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLER 294 (362)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred cCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEeecCCCcHHHHHHH
Confidence 33322222333444555555531 1111 137889995 56677789999999999999877664 55
Q ss_pred HHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 606 LEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 606 l~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+..++++..+. .+.+.++ .++.+++|+|++++|++++..+.++... .+....|......+
T Consensus 295 l~~i~~~~~l~--~~~~~L~--~li~~~s~~D~~~~i~~~~~~~~~~l~~-----------ei~~~~~~~~k~~I 354 (362)
T d1svma_ 295 SEFLLEKRIIQ--SGIALLL--MLIWYRPVAEFAQSIQSRIVEWKERLDK-----------EFSLSVYQKMKFNV 354 (362)
T ss_dssp CTHHHHTTCTT--CHHHHHH--HHHHHSCGGGSCGGGHHHHHHHHHHHHH-----------HCCHHHHHHHHHHH
T ss_pred HHHHhcccCCC--CCHHHHH--HHccCCCHHHHHHHHHHHHHHHHHHHhh-----------hccHHHHHHHHHHH
Confidence 66666666654 3455566 4566899999999999998877665543 46666766665544
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.1e-15 Score=151.10 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=129.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------- 185 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------- 185 (702)
+|+||+|++++++.|...+.. -+.++++||+||||||||++|+++++.++..
T Consensus 10 ~~~dlig~~~~~~~L~~~i~~------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (239)
T d1njfa_ 10 TFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 77 (239)
T ss_dssp SGGGSCSCHHHHHHHHHHHHT------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred CHHHccChHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHH
Confidence 899999999999999987732 2345679999999999999999999987432
Q ss_pred --------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 186 --------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 186 --------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
++.++.++. .....++.+++.+.. +...|++|||+|.|.... .+.|+..|+
T Consensus 78 i~~~~~~~~~~~~~~~~------~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~-----------q~~Llk~lE 140 (239)
T d1njfa_ 78 IEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHS-----------FNALLKTLE 140 (239)
T ss_dssp HHHTCCTTEEEEETTCS------SSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHH-----------HHHHHHHHH
T ss_pred HHcCCCCeEEEecchhc------CCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHH-----------HHHHHHHHh
Confidence 233333221 112334555555421 233599999999886332 345888887
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-cc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FD 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~ 332 (702)
+. +.++.+|++||.+..+.+++++ |+ ..+.|+.|+.++...++...+.......+ ..
T Consensus 141 ~~-------------------~~~~~~il~tn~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~ 198 (239)
T d1njfa_ 141 EP-------------------PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 198 (239)
T ss_dssp SC-------------------CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred cC-------------------CCCeEEEEEcCCccccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhhccCCCHHH
Confidence 52 3458899999999999999999 99 78999999999999999887765544333 34
Q ss_pred HHHHHhhCCCCCHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+..+++.+.| +.|.+.++++.
T Consensus 199 l~~i~~~s~G-d~R~ain~l~~ 219 (239)
T d1njfa_ 199 LQLLARAAEG-SLRDALSLTDQ 219 (239)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHH
Confidence 6667777765 55555444443
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=4.7e-16 Score=152.32 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=142.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+.++++++|.+.+++.|..++.. ....++||+||||||||++|+++|++++ ..++.+++++
T Consensus 10 rP~~~~d~ig~~~~~~~L~~~~~~-------------~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~ 76 (224)
T d1sxjb2 10 RPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 76 (224)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccc
Confidence 355789999999998888776531 1234699999999999999999999875 3477888776
Q ss_pred ccccCcCchHHHHHHHHHHHH-------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 499 LLNKYVGESELAVRTLFSRAR-------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~-------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
..+. ..+...+.... ...+.|++|||+|.+. ...++.|+..++.. ...+.++++
T Consensus 77 ~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~-----------~~~~~~ll~~~e~~--~~~~~~i~~ 137 (224)
T d1sxjb2 77 DRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY--SNSTRFAFA 137 (224)
T ss_dssp CCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT--TTTEEEEEE
T ss_pred cCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccc-----------hhHHHHHhhhcccc--ccceeeeec
Confidence 5331 22222222221 1245699999999998 66777888777743 446677788
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAAL 650 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~ 650 (702)
|+....+.+++++ || ..|.|+.|+.++...++...+++.++..+ ..++.++. .+++|+|.+++.......
T Consensus 138 ~~~~~~i~~~l~s--r~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~------~s~Gd~R~ai~~Lq~~~~ 208 (224)
T d1sxjb2 138 CNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIF------TAEGDMRQAINNLQSTVA 208 (224)
T ss_dssp ESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH------HHTTCHHHHHHHHHHHHH
T ss_pred cCchhhhhhHHHH--HH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHH------HcCCcHHHHHHHHHHHHH
Confidence 9999999999988 88 57999999999999999998887665433 23556663 245688877765443221
Q ss_pred HHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 651 EDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 651 ~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.. ..|+.+++.+++.
T Consensus 209 ~~-------------~~i~~~~i~~~~d 223 (224)
T d1sxjb2 209 GH-------------GLVNADNVFKIVD 223 (224)
T ss_dssp HH-------------SSBCHHHHHHHHT
T ss_pred cC-------------CCcCHHHHHHHhC
Confidence 11 1577787776653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=9.9e-16 Score=151.21 Aligned_cols=211 Identities=15% Similarity=0.110 Sum_probs=140.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEeccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPE 498 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~ 498 (702)
+.+++++.|.+.+++.|..++. .....+++|+||||||||++++++|+++ ......++.+.
T Consensus 8 P~~~~diig~~~~~~~l~~~i~-------------~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~ 74 (237)
T d1sxjd2 8 PKNLDEVTAQDHAVTVLKKTLK-------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 74 (237)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTT-------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHccCcHHHHHHHHHHHH-------------cCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccc
Confidence 4578999999998887776442 1223469999999999999999999986 55667777665
Q ss_pred ccccC-cCchHHHH---------HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 499 LLNKY-VGESELAV---------RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 499 l~~~~-~g~~~~~~---------~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
..+.. ........ ...+.........||||||+|.+. ....+.++..++.. .....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~-----------~~~~~~l~~~~~~~--~~~~~~ 141 (237)
T d1sxjd2 75 ERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETY--SGVTRF 141 (237)
T ss_dssp CCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEE
T ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccC-----------HHHHHHHhhccccc--cccccc
Confidence 43321 11111110 000111122344699999999998 55666676666643 355677
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|.+++....+.+++.+ || ..+.|++|+.++...+++..+.+.++.-+ ..++.++.. +++|+|.+++....
T Consensus 142 i~~~~~~~~~~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~------s~gd~R~ai~~L~~ 212 (237)
T d1sxjd2 142 CLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDI------SAGDLRRGITLLQS 212 (237)
T ss_dssp EEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH------TSSCHHHHHHHHHH
T ss_pred cccccccccccccccc--hh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHH------cCCCHHHHHHHHHH
Confidence 7888888888899988 88 68899999999999999999887776433 335666632 34577776654333
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
.+....... ....|+.+++++++
T Consensus 213 ~~~~~~~~~-------~~~~It~~~i~e~~ 235 (237)
T d1sxjd2 213 ASKGAQYLG-------DGKNITSTQVEELA 235 (237)
T ss_dssp THHHHHHHC-------SCCCCCHHHHHHHH
T ss_pred HHHhchhcC-------CCCccCHHHHHHhh
Confidence 222222211 11268999998876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3.6e-16 Score=153.53 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=119.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEechhhhc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-----FYKISATEVVS 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-----~~~i~~~~l~~ 196 (702)
+|+|++|++++++.|..++.. + ...++||+||||||||++|+++|++++.. ++..+.++...
T Consensus 12 ~~~divg~~~~~~~L~~~i~~-----------~--~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~ 78 (227)
T d1sxjc2 12 TLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG 78 (227)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS
T ss_pred CHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCC
Confidence 899999999999999987732 1 12359999999999999999999997532 34555544321
Q ss_pred ccccccHHHHHHHHHHHH------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAY------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
. ......+.... .....+++|||+|.+.... ...|+..++..
T Consensus 79 ~------~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~-----------~~~Ll~~le~~--------------- 126 (227)
T d1sxjc2 79 I------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERY--------------- 126 (227)
T ss_dssp H------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHT---------------
T ss_pred e------eeeecchhhccccccccCCCeEEEEEeccccchhhH-----------HHHHHHHhhhc---------------
Confidence 1 11111111111 1233599999999886443 23466677653
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCC
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPG 342 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g 342 (702)
+.+++++.+||.+..+++++++ |+ ..+.|..|+.++...++...+....+..+. .+..+++.+.|
T Consensus 127 ----~~~~~~~~~~~~~~~i~~~i~s--r~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G 192 (227)
T d1sxjc2 127 ----TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 192 (227)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ----ccceeeccccCcHHHhHHHHHH--HH-hhhccccccccccccccccccccccccCCHHHHHHHHHHcCC
Confidence 2347889999999999999999 98 779999999999999999888776654333 35666766655
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.8e-15 Score=148.18 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=122.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechhhhc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-----PFYKISATEVVS 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~i~~~~l~~ 196 (702)
+|+|++|++++++.|..++.. ....++||+||||||||++|+.+|+.++. .++.+++++...
T Consensus 13 ~~~d~ig~~~~~~~L~~~~~~-------------~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~ 79 (224)
T d1sxjb2 13 VLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 79 (224)
T ss_dssp SGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred CHHHhcCCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCC
Confidence 899999999999999987732 12246999999999999999999999864 366777665322
Q ss_pred ccccccHHHHHHHHHHHHh-------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYR-------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
...+...+..... ....+++|||+|.+....+. .|+..++..
T Consensus 80 ------~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~-----------~ll~~~e~~-------------- 128 (224)
T d1sxjb2 80 ------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQ-----------ALRRTMELY-------------- 128 (224)
T ss_dssp ------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHH-----------TTHHHHHHT--------------
T ss_pred ------ceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHHH-----------HHhhhcccc--------------
Confidence 1222222222211 23459999999988754332 355556542
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCC
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPG 342 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g 342 (702)
+....+|.+|+....+.+++++ |+ ..+.|+.|+.++...++...+....+..+. .+..++..+.|
T Consensus 129 -----~~~~~~i~~~~~~~~i~~~l~s--r~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G 194 (224)
T d1sxjb2 129 -----SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 194 (224)
T ss_dssp -----TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred -----ccceeeeeccCchhhhhhHHHH--HH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence 3347888999999999999999 99 679999999999999999888766554333 35566666555
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=3.2e-15 Score=149.04 Aligned_cols=198 Identities=20% Similarity=0.259 Sum_probs=125.9
Q ss_pred CCcccccCHHHHHHHHHHHhhhhcc----CCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLY----HPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~----~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
-+|++|+|+++.+++|.+.+..... ........+.....++||+||||||||++|+++|++++..++.+++++..+
T Consensus 11 ~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~ 90 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 90 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchh
Confidence 3899999999999999988754211 111122334556679999999999999999999999999999999887544
Q ss_pred ccccccH-H-H-----HHHHH-----HHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 197 GVSGASE-E-N-----IRDLF-----SKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 197 ~~~g~~~-~-~-----~~~~f-----~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
.+..... . . ....+ .......+.++++||++.+....+.. ...++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~--------~~~~~~~~~~~--------- 153 (253)
T d1sxja2 91 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGG--------VGQLAQFCRKT--------- 153 (253)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTH--------HHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhh--------hHHHhhhhccc---------
Confidence 3110000 0 0 00000 00012245699999999987654332 11233322221
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCCC
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-SFDLVKIARSTPGF 343 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g~ 343 (702)
...++++++++....++ .+++ |+ ..+.|+.|+.+++..++..++....+.. ...+..+++.+.|
T Consensus 154 ----------~~~ii~i~~~~~~~~~~-~l~~--~~-~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G- 218 (253)
T d1sxja2 154 ----------STPLILICNERNLPKMR-PFDR--VC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG- 218 (253)
T ss_dssp ----------SSCEEEEESCTTSSTTG-GGTT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-
T ss_pred ----------ccccccccccccccccc-cccc--ee-eeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC-
Confidence 12255655555555555 4555 55 8899999999999999999887544432 2347788888765
Q ss_pred CHHHHHHHHH
Q 045279 344 VGADLAALAN 353 (702)
Q Consensus 344 ~~~dl~~l~~ 353 (702)
|++.++.
T Consensus 219 ---DiR~ai~ 225 (253)
T d1sxja2 219 ---DIRQVIN 225 (253)
T ss_dssp ---CHHHHHH
T ss_pred ---cHHHHHH
Confidence 5555443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=8.8e-16 Score=153.08 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=122.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---eEEEEecccc-
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA---NFIHIKGPEL- 499 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~---~~~~i~~~~l- 499 (702)
.+.++++++|.+++++.|..++.. .....++||+||||||||++|+++|+++.. ....+.....
T Consensus 6 ~P~~~~diig~~~~~~~L~~~~~~------------~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~ 73 (252)
T d1sxje2 6 RPKSLNALSHNEELTNFLKSLSDQ------------PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 73 (252)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTC------------TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccc
Confidence 345789999999888877654321 123447999999999999999999998611 1111110000
Q ss_pred ------------ccc--------CcC-chHHHHHHHHHHH--------------HhCCCeEEEEeCcchhhcccCCCCch
Q 045279 500 ------------LNK--------YVG-ESELAVRTLFSRA--------------RTCSPCILFFDEVDALTTKRGKEGGW 544 (702)
Q Consensus 500 ------------~~~--------~~g-~~~~~~~~~f~~a--------------~~~~~~vl~iDEid~l~~~r~~~~~~ 544 (702)
... ..+ .....+....... ......+++|||+|.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~--------- 144 (252)
T d1sxje2 74 TASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------- 144 (252)
T ss_dssp ---------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC---------
T ss_pred ccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccc---------
Confidence 000 001 1111112222111 11234599999999997
Q ss_pred HHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC--CCCCHH
Q 045279 545 VVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID--DSVDLH 622 (702)
Q Consensus 545 ~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~ 622 (702)
...++.|+..++.. ..++.+|++||.++.+.+++.+ || ..|.|++|+.++..+++...+.+..+. .+.-++
T Consensus 145 --~~~~~~l~~~~e~~--~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~ 217 (252)
T d1sxje2 145 --KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILK 217 (252)
T ss_dssp --HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHH
T ss_pred --cccchhhhcccccc--cccccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHHHHHcCCCCCcHHHHH
Confidence 66777788777754 4567788999999999999988 99 589999999999999999888765543 233356
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 623 TIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 623 ~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
.++. .+.||+|++++...
T Consensus 218 ~i~~------~s~Gd~R~ai~~Lq 235 (252)
T d1sxje2 218 RIAQ------ASNGNLRVSLLMLE 235 (252)
T ss_dssp HHHH------HHTTCHHHHHHHHT
T ss_pred HHHH------HcCCcHHHHHHHHH
Confidence 6663 23468888876444
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.60 E-value=4.3e-15 Score=150.41 Aligned_cols=232 Identities=15% Similarity=0.033 Sum_probs=140.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPEL 499 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l 499 (702)
+.+.|-+...+.+...+...+.+.. ....+...++|+||||||||++++++++.+ ...++.+++...
T Consensus 16 ~~~~~Re~e~~~l~~~l~~~~~~~~----~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (287)
T d1w5sa2 16 PELRVRRGEAEALARIYLNRLLSGA----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 91 (287)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS----CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC----CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccc
Confidence 4566666666766665554432211 011122346778999999999999999976 234455555443
Q ss_pred ccc----------------CcCchHHHHHHHH-HHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC
Q 045279 500 LNK----------------YVGESELAVRTLF-SRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD 561 (702)
Q Consensus 500 ~~~----------------~~g~~~~~~~~~f-~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 561 (702)
... +.+.....+...+ .... ...+.++++||+|.+....+.. ......+..+...+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~--~~~~~~l~~l~~~l~~~~ 169 (287)
T d1w5sa2 92 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA--AEDLYTLLRVHEEIPSRD 169 (287)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC--HHHHHHHHTHHHHSCCTT
T ss_pred cchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc--hhHHHHHHHHHHhcchhh
Confidence 221 2333333333333 3222 3456788899999998654332 222333334444444555
Q ss_pred CCCcEEEEEecCCCCc------cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC---CCCHHHHhhhhcCC-
Q 045279 562 KRKGVFVIGATNRPDV------MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD---SVDLHTIAQSKFCE- 631 (702)
Q Consensus 562 ~~~~~~vI~atn~~~~------ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~~~- 631 (702)
....+.+|+++|.++. .++.+.+ ||+..++|++|+.+++.+|++..++...... +..++.++......
T Consensus 170 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~ 247 (287)
T d1w5sa2 170 GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 247 (287)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred cccceeEEeecccHHHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccc
Confidence 5667777777776543 3456666 8999999999999999999998876532222 22356666322111
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 632 --NLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 632 --~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
.-..+.+.++|+.|+..|..+.. ..|+.+|+++|+.+
T Consensus 248 ~~~gd~R~ai~~l~~a~~~A~~~~~-----------~~It~~~V~~A~~e 286 (287)
T d1w5sa2 248 GGDGSARRAIVALKMACEMAEAMGR-----------DSLSEDLVRKAVSE 286 (287)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTC-----------SSCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHhc
Confidence 11345566678888877665532 27999999999875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.8e-14 Score=141.11 Aligned_cols=225 Identities=22% Similarity=0.263 Sum_probs=150.1
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~ 496 (702)
.++.+.|.+.....+.+.+ ......+++|+||||+|||++++.+|... +..++.++.
T Consensus 16 ~ld~~igRd~Ei~~l~~iL-------------~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~ 82 (268)
T d1r6bx2 16 GIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 82 (268)
T ss_dssp CSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCcccChHHHHHHHHHHH-------------hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence 3456777776655554433 33456789999999999999999999864 568999999
Q ss_pred ccccc--cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 497 PELLN--KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 497 ~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+.++. +|.|+.+..++.++..+......||||||++.+.+..+.++++ ..+-+.|...| ....+-+|++|+.
T Consensus 83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~--~d~a~~Lkp~L----~rg~i~vIgatT~ 156 (268)
T d1r6bx2 83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGSTTY 156 (268)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHHHHSSCS----SSCCCEEEEEECH
T ss_pred chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCcc--ccHHHHhhHHH----hCCCCeEEEeCCH
Confidence 99985 6899999999999999988888999999999998654333321 22333332223 4667888888864
Q ss_pred -----CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC----CCCC-CCCHH---HHhhhhcCC-CCCHHHHHH
Q 045279 575 -----PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----PIDD-SVDLH---TIAQSKFCE-NLSGADLAA 640 (702)
Q Consensus 575 -----~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~-~~~~~---~la~~~~~~-~~sg~dl~~ 640 (702)
...-|++|.| ||. .|.++.|+.++-..|+....... .+.- +..+. .++.+.+.+ .|.+.-| .
T Consensus 157 eey~~~~e~d~al~r--rF~-~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAI-d 232 (268)
T d1r6bx2 157 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI-D 232 (268)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH-H
T ss_pred HHHHHHHhhcHHHHh--hhc-ccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHH-H
Confidence 3467899999 995 89999999999999997754432 2211 11122 233333444 4454444 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
++.+|+..+-... .......|...|++..+.++.
T Consensus 233 llDea~a~~~~~~-------~~~~~~~i~~~di~~~i~~~~ 266 (268)
T d1r6bx2 233 VIDEAGARARLMP-------VSKRKKTVNVADIESVVARIA 266 (268)
T ss_dssp HHHHHHHHHHHSS-------SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc-------cccCcccCCHHHHHHHHHHHh
Confidence 7777764432211 112234688899988887753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.1e-14 Score=144.88 Aligned_cols=177 Identities=22% Similarity=0.265 Sum_probs=112.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhc-
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVS- 196 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~- 196 (702)
.+|++++|.+++++.|...+.. -....++||+||||||||++|+++|+.+..+ ...++......
T Consensus 8 ~~~~diig~~~~~~~L~~~~~~------------~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~ 75 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSLSDQ------------PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 75 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTC------------TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCHHHccCcHHHHHHHHHHHHc------------CCCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccccc
Confidence 3899999999999988865521 1123469999999999999999999986211 11111110000
Q ss_pred --------------------cccccc-HHHHHHHHHHHH--------------hhCCceEEechhhHhhhcchhhhHHHH
Q 045279 197 --------------------GVSGAS-EENIRDLFSKAY--------------RTAPSIVFIDEIDAIASKRENLQREME 241 (702)
Q Consensus 197 --------------------~~~g~~-~~~~~~~f~~a~--------------~~~p~il~iDEid~l~~~~~~~~~~~~ 241 (702)
...+.. ............ .....+++|||+|.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~-------- 147 (252)
T d1sxje2 76 SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA-------- 147 (252)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHH--------
T ss_pred ccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEecccccccccc--------
Confidence 000110 011111111110 1223489999999885432
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 242 RRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 242 ~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
...|+..++.. +.++.+|++||.++.+++++++ || ..|+|++|+.++..+++...
T Consensus 148 ---~~~l~~~~e~~-------------------~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i 202 (252)
T d1sxje2 148 ---QAALRRTMEKY-------------------SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 202 (252)
T ss_dssp ---HHHHHHHHHHS-------------------TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ---chhhhcccccc-------------------cccccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHH
Confidence 23355556542 3458899999999999999999 99 68999999999999999888
Q ss_pred hcCccc--CCcccHHHHHhhCCC
Q 045279 322 TRNLRV--EGSFDLVKIARSTPG 342 (702)
Q Consensus 322 ~~~~~~--~~~~~~~~la~~t~g 342 (702)
+..... .....+..++..+.|
T Consensus 203 ~~~e~~~~~~~~~l~~i~~~s~G 225 (252)
T d1sxje2 203 VTNERIQLETKDILKRIAQASNG 225 (252)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC
Confidence 765433 333345677777665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.57 E-value=4.9e-14 Score=141.54 Aligned_cols=221 Identities=16% Similarity=0.089 Sum_probs=140.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccc---
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLN--- 501 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~--- 501 (702)
+.++|.+...+.+.+++...+..+ ..++.+++|+||||||||++++++++.+ +..++.+++.....
T Consensus 16 ~~l~~Re~ei~~l~~~l~~~l~~~-------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (276)
T d1fnna2 16 KRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 88 (276)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-------CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhh
Confidence 457788877777777665543332 2467789999999999999999999987 45667776644321
Q ss_pred -------------cCcCchHHH-HHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC--CCCCC
Q 045279 502 -------------KYVGESELA-VRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG--ADKRK 564 (702)
Q Consensus 502 -------------~~~g~~~~~-~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~--~~~~~ 564 (702)
.+.+..... ...+..... ...+.++++|++|.+. ....+.+...+.. .....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~ 157 (276)
T d1fnna2 89 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKLGAF 157 (276)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHHSSC
T ss_pred hhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhh-----------hhhhhhHHHHHhcccccccc
Confidence 122222222 233333333 3356788899999887 3333333333322 12345
Q ss_pred cEEEEEecCCC---CccCccccCCCcc-ceEEEcCCCCHHHHHHHHHHHhccCCCC---CCCCHHHHhhhhc----CCCC
Q 045279 565 GVFVIGATNRP---DVMDRAVLRPGRF-GKLLYVPLPTPDERGLILEALARKKPID---DSVDLHTIAQSKF----CENL 633 (702)
Q Consensus 565 ~~~vI~atn~~---~~ld~a~~r~gRf-~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~la~~~~----~~~~ 633 (702)
.+++|++++.. +.+++.+.+ |+ ...|.|++|+.+++..|++..++..... .+..++.++.... ...+
T Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~ 235 (276)
T d1fnna2 158 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 235 (276)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred ceEEeecCCchhhhhhcchhhhh--hhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhc
Confidence 67778888874 467777765 54 3578999999999999999877642222 2333455553221 1122
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 634 --SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 634 --sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+.+.+.++|+.|+..|..+.. ..|+.+|+++|++++
T Consensus 236 ~G~~R~a~~ll~~a~~~A~~~~~-----------~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 236 RGDARLAIDILYRSAYAAQQNGR-----------KHIAPEDVRKSSKEV 273 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTC-----------SSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC-----------CCcCHHHHHHHHHHH
Confidence 235666788888777766543 279999999999876
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=8.7e-15 Score=144.29 Aligned_cols=185 Identities=17% Similarity=0.235 Sum_probs=123.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEV 194 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l 194 (702)
-+|++++|++++++.|..++.. ....+++|+||||||||++++++|+++ ....+.++++..
T Consensus 9 ~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~ 75 (237)
T d1sxjd2 9 KNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 75 (237)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccc
Confidence 3899999999999999876621 223469999999999999999999986 455666665543
Q ss_pred hcccccccHHHHHHH------------HHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 195 VSGVSGASEENIRDL------------FSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
.... .....+... +.........++||||+|.+.....+ .++..++..
T Consensus 76 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~-----------~l~~~~~~~------- 135 (237)
T d1sxjd2 76 RGIS--IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQS-----------ALRRTMETY------- 135 (237)
T ss_dssp CCHH--HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHH-----------HHHHHHHHT-------
T ss_pred ccch--HHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHH-----------HHhhccccc-------
Confidence 2110 000011110 11111123348999999988753222 244444432
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCC
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTP 341 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~ 341 (702)
+....+|.+++....+.+++++ || ..+.|.+|+.++...++...+.+..+..+. .+..+++...
T Consensus 136 ------------~~~~~~i~~~~~~~~~~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~ 200 (237)
T d1sxjd2 136 ------------SGVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 200 (237)
T ss_dssp ------------TTTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred ------------cccccccccccccccccccccc--hh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcC
Confidence 2236788888998999999999 99 789999999999999999988876654433 3667787776
Q ss_pred CCCHHHHHHHHHH
Q 045279 342 GFVGADLAALANK 354 (702)
Q Consensus 342 g~~~~dl~~l~~~ 354 (702)
| ..|...++++.
T Consensus 201 g-d~R~ai~~L~~ 212 (237)
T d1sxjd2 201 G-DLRRGITLLQS 212 (237)
T ss_dssp S-CHHHHHHHHHH
T ss_pred C-CHHHHHHHHHH
Confidence 5 44444444433
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.51 E-value=4.3e-15 Score=154.57 Aligned_cols=180 Identities=16% Similarity=0.069 Sum_probs=113.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc-ccccHHHHHHHHHHH------HhhCCceEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV-SGASEENIRDLFSKA------YRTAPSIVFIDEI 226 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~-~g~~~~~~~~~f~~a------~~~~p~il~iDEi 226 (702)
|.+.++++||+||||||||++|+++|+.++.+++.+++++..+.+ .+........+|+.+ ....|+++++||+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~Dei 229 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNL 229 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehH
Confidence 677788999999999999999999999999999999988765432 222221111222222 1234566667777
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEE
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESH-RLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIV 305 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~ 305 (702)
|.|.. .+++.. ...... ......... ..+|+|||. .+.++.+++||+..+.
T Consensus 230 D~l~~-------------------~~dg~~~~~~~~~---~~~~~~~~~---~p~i~ttN~---~~~~~~r~~Rf~~~i~ 281 (362)
T d1svma_ 230 DNLRD-------------------YLDGSVKVNLEKK---HLNKRTQIF---PPGIVTMNE---YSVPKTLQARFVKQID 281 (362)
T ss_dssp HTTHH-------------------HHHCSSCEEECCS---SSCCEEECC---CCEEEEECS---CCCCHHHHTTEEEEEE
T ss_pred hhccc-------------------ccCCcchhhhhhh---hhchhhhcc---CCceeeccc---ccccccccccCceEEe
Confidence 65432 222211 000000 000000001 127889995 5666777899999999
Q ss_pred eCCCCHHHHH-HHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 306 LGVPDENARV-QILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRI 363 (702)
Q Consensus 306 ~~~p~~~er~-~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~ 363 (702)
+..|+...+. +++..++++..+. .+...++..+.+++++|+.+.++.++....+++
T Consensus 282 ~~~~~~~~~~~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l 338 (362)
T d1svma_ 282 FRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338 (362)
T ss_dssp CCCCHHHHHHHHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9888776664 4455555555443 345567777888999999999998877665554
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.7e-13 Score=140.32 Aligned_cols=214 Identities=18% Similarity=0.255 Sum_probs=139.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-----c
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-----V 198 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-----~ 198 (702)
..|+|++++++.|.+.+......-. . .-++...+||+||||||||.||++||+.++.+++.++++.+... .
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~--~--~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l 97 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLG--H--EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 97 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS--C--TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSS
T ss_pred CeecChHHHHHHHHHHHHHHHccCC--C--CCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhh
Confidence 4689999999999988754322111 0 12345679999999999999999999999999999999987543 1
Q ss_pred cccc----HHHHHH-HHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 199 SGAS----EENIRD-LFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 199 ~g~~----~~~~~~-~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.. ...... +.........+|+++||+|.+.+ .+.+.|+..+++... .+..+.. .
T Consensus 98 ~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-----------~V~~~lLqild~G~l-td~~Gr~----v--- 158 (315)
T d1r6bx3 98 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTL-TDNNGRK----A--- 158 (315)
T ss_dssp CCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEE-EETTTEE----E---
T ss_pred cccCCCccccccCChhhHHHHhCccchhhhcccccccc-----------hHhhhhHHhhcccee-cCCCCCc----c---
Confidence 2221 111112 33334455668999999998764 355678888875432 1111100 0
Q ss_pred CCCeEEEEEecCCCC-------------------------CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc--
Q 045279 274 KPGYVLVIGATNRPD-------------------------AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR-- 326 (702)
Q Consensus 274 ~~~~v~vI~atn~~~-------------------------~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~-- 326 (702)
.-.+.++|+|+|--. .+.|.|+. |++.++.|.+.+.++...|+...+....
T Consensus 159 df~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~~~~~~ 236 (315)
T d1r6bx3 159 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 236 (315)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 123478889998521 25678888 9999999999999999999876554321
Q ss_pred -------cCCc-ccHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 327 -------VEGS-FDLVKIAR--STPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 327 -------~~~~-~~~~~la~--~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
+... ..+..++. ..+.+-+|.|+++++.-....+.+
T Consensus 237 l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~ 282 (315)
T d1r6bx3 237 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 282 (315)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHhcCcchhhHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHH
Confidence 1111 12334443 345666788888877665555443
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=4.9e-13 Score=142.45 Aligned_cols=252 Identities=21% Similarity=0.280 Sum_probs=162.9
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc-CcCc-h
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK-YVGE-S 507 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~g~-~ 507 (702)
++|++++|+.+.-++...++....-... .--.++|+||+||||||||.||+.||+.++.||+.++++.|... |+|. .
T Consensus 16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCT
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecch
Confidence 8999999999987776554322211111 11246799999999999999999999999999999999998764 6664 3
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 045279 508 ELAVRTLFSRAR-------------------------------------------------------------------- 519 (702)
Q Consensus 508 ~~~~~~~f~~a~-------------------------------------------------------------------- 519 (702)
+..++.+++.|.
T Consensus 96 esii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~ 175 (443)
T d1g41a_ 96 DSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEID 175 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------------------------
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCccccccccc
Confidence 333333332110
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 045279 520 -----------------------------------------------------------------------TCSPCILFF 528 (702)
Q Consensus 520 -----------------------------------------------------------------------~~~~~vl~i 528 (702)
....+++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~~~~~~ 255 (443)
T d1g41a_ 176 VSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFI 255 (443)
T ss_dssp -------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEE
T ss_pred cccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhccCcccc
Confidence 012358899
Q ss_pred eCcchhhcccCCCCchHH-HHHHHHHHHhhhCCC--------CCCcEEEEEecCC----CCccCccccCCCccceEEEcC
Q 045279 529 DEVDALTTKRGKEGGWVV-ERLLNQLLIELDGAD--------KRKGVFVIGATNR----PDVMDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~~--------~~~~~~vI~atn~----~~~ld~a~~r~gRf~~~i~~~ 595 (702)
||++.........+.+.. ..+...++..+++.. ..+.+++|+++.. +..+-|.|.- ||+.++.+.
T Consensus 256 dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliG--RlPi~v~L~ 333 (443)
T d1g41a_ 256 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELT 333 (443)
T ss_dssp ETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECC
T ss_pred chhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhcc--ceEEEEEcc
Confidence 999998877665555433 455666777766632 3445566655532 4456677764 999999999
Q ss_pred CCCHHHHHHHHHH-----------HhccCCCC---CCCCHHHHhhhhc-----CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 596 LPTPDERGLILEA-----------LARKKPID---DSVDLHTIAQSKF-----CENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 596 ~p~~~~r~~il~~-----------~~~~~~~~---~~~~~~~la~~~~-----~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+.++..+||.- ++...++. .+..++.+|+..+ +.+-.++-|+.++.+....+.=+.-.
T Consensus 334 ~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~p~- 412 (443)
T d1g41a_ 334 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD- 412 (443)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG-
T ss_pred CccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccCCC-
Confidence 9999999988842 22222322 1233566665444 24556678888877776655444321
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHH
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRY 692 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 692 (702)
.......|+.+.+.+.+..+ +..+++.+|
T Consensus 413 ----~~~~~v~Id~~~v~~~l~~~---~~~~dl~k~ 441 (443)
T d1g41a_ 413 ----MNGQTVNIDAAYVADALGEV---VENEDLSRF 441 (443)
T ss_dssp ----CTTCEEEECHHHHHHHHTTT---TTCHHHHHH
T ss_pred ----CCCCEEEECHHHHHhhhhch---hhcCCcccc
Confidence 23445678999998888654 345566665
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.4e-14 Score=133.76 Aligned_cols=157 Identities=27% Similarity=0.342 Sum_probs=111.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~ 496 (702)
.++.+.|-+...+.+.+.+ ..+...+++|+||||+|||++++.+|... +..++.++.
T Consensus 20 ~ld~~igRd~Ei~~l~~iL-------------~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~ 86 (195)
T d1jbka_ 20 KLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCCCcCcHHHHHHHHHHH-------------hccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 3455677766655554433 23455689999999999999999999855 578999999
Q ss_pred cccc--ccCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELL--NKYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~--~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+.++ .+|.|+.+..++.++..+.... ..||||||++.+.+..+..++. .+-+.|.-.|. ...+.+|++|.
T Consensus 87 ~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~---d~~~~Lkp~L~----rg~l~~IgatT 159 (195)
T d1jbka_ 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALA----RGELHCVGATT 159 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHH----TTSCCEEEEEC
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcc---cHHHHHHHHHh----CCCceEEecCC
Confidence 9988 4577899999999998876544 5799999999998644322221 22333444443 45566787775
Q ss_pred CC-----CccCccccCCCccceEEEcCCCCHHHHHHHH
Q 045279 574 RP-----DVMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606 (702)
Q Consensus 574 ~~-----~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il 606 (702)
.. -.-|++|.| ||. .|.+..|+.++-..|+
T Consensus 160 ~eey~~~~e~d~aL~r--rF~-~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 160 LDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHHcCHHHHh--cCC-EeecCCCCHHHHHHHh
Confidence 42 356999999 995 8889999998877664
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.47 E-value=3.1e-13 Score=136.43 Aligned_cols=215 Identities=14% Similarity=0.001 Sum_probs=129.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~ 191 (702)
...+.|.|.+..+++|...+..++.+... .-.....++|+||||||||++++++++.+. ..+.++++
T Consensus 13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~----~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (287)
T d1w5sa2 13 YIPPELRVRRGEAEALARIYLNRLLSGAG----LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88 (287)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSC----BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCC----CCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecc
Confidence 35678999999999998877666544321 111223467789999999999999999862 34455555
Q ss_pred hhhhcc----------------cccccHHHHHHHHHHHH--hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 192 TEVVSG----------------VSGASEENIRDLFSKAY--RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 192 ~~l~~~----------------~~g~~~~~~~~~f~~a~--~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...... ..+.....+...+.... ...+.++++||+|.+....+... .....+...++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~-----~~~~~l~~l~~ 163 (287)
T d1w5sa2 89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA-----EDLYTLLRVHE 163 (287)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCH-----HHHHHHHTHHH
T ss_pred ccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccch-----hHHHHHHHHHH
Confidence 543221 22333333333333322 23456888999999876543321 11222333332
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV 327 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~ 327 (702)
...... ....+.+|+.+|.++ ...+++.+ ||...+.|+.|+.+++.+|++..++....
T Consensus 164 ~l~~~~--------------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~ 227 (287)
T d1w5sa2 164 EIPSRD--------------GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLR 227 (287)
T ss_dssp HSCCTT--------------SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBC
T ss_pred hcchhh--------------cccceeEEeecccHHHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhc
Confidence 221100 123466777666544 34567777 88899999999999999999987654322
Q ss_pred CC---cccHHHHHhhCC-----CCCHHHHHHHHHHHHHHHH
Q 045279 328 EG---SFDLVKIARSTP-----GFVGADLAALANKAGNLAM 360 (702)
Q Consensus 328 ~~---~~~~~~la~~t~-----g~~~~dl~~l~~~a~~~a~ 360 (702)
.. ...+..+++.+. ...+|....+++.|+..|.
T Consensus 228 ~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~ 268 (287)
T d1w5sa2 228 DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAE 268 (287)
T ss_dssp TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 21 222555665543 2366777777877766553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.47 E-value=6.6e-13 Score=133.11 Aligned_cols=207 Identities=16% Similarity=0.058 Sum_probs=128.5
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEechhh
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISATEV 194 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~~l 194 (702)
+....+.++|.+..++.+.+.+...+..+. ..+.++||+||||||||++++++++.+. ..++.+++...
T Consensus 11 ~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~-------~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 11 PSYVPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCC-------CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 344667899999999999988866554432 3567899999999999999999999874 45666665432
Q ss_pred hcc----------------cccccHHHH-HHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 195 VSG----------------VSGASEENI-RDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 195 ~~~----------------~~g~~~~~~-~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
... ..+.....+ ..+...... ..+.++++|++|.+...... ....++..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~~~~~~~~~~- 154 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILS--------TFIRLGQEADKL- 154 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHH--------HHHHHTTCHHHH-
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhh--------hHHHHHhccccc-
Confidence 111 122222222 233333322 24567788998876533211 111122222111
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcccC---C
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLRVE---G 329 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~~~---~ 329 (702)
....+.+|++++.. +.+++++.+ |+. ..|.|++|+.+++.+|+...+...... .
T Consensus 155 -----------------~~~~~~~i~~~~~~~~~~~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~ 215 (276)
T d1fnna2 155 -----------------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS 215 (276)
T ss_dssp -----------------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC
T ss_pred -----------------cccceEEeecCCchhhhhhcchhhhh--hhcchhccccchhHHHHHHHHHHHHHHhccccccc
Confidence 12347888888874 478888877 653 568999999999999998776543222 2
Q ss_pred cccHHHHHhhCC--------CCCHHHHHHHHHHHHHHHH
Q 045279 330 SFDLVKIARSTP--------GFVGADLAALANKAGNLAM 360 (702)
Q Consensus 330 ~~~~~~la~~t~--------g~~~~dl~~l~~~a~~~a~ 360 (702)
+..+..++..+. +-+++.+.++|+.|+..|.
T Consensus 216 ~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~ 254 (276)
T d1fnna2 216 EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 254 (276)
T ss_dssp HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 222444554431 2356777788887765553
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=1.3e-13 Score=141.00 Aligned_cols=212 Identities=19% Similarity=0.262 Sum_probs=138.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc---
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG--- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~--- 197 (702)
+.|+|++++++.+.+.+......-. ..-+|...+||+||||||||.+|+.||+.+ +.+++.++++++...
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~l~----~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~ 98 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 98 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCS----CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhh
Confidence 4689999999999887754422100 012344578999999999999999999998 678999999877542
Q ss_pred ---------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 198 ---------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 198 ---------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
|.|..+. ..+.+.......+|+++||||.+.+. +.+.|+..+++... .+..+.
T Consensus 99 ~~L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DEieK~~~~-----------v~~~ll~~l~~g~~-~~~~gr---- 160 (315)
T d1qvra3 99 SRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIEKAHPD-----------VFNILLQILDDGRL-TDSHGR---- 160 (315)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCHH-----------HHHHHHHHHTTTEE-CCSSSC----
T ss_pred hhhcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEehHhhcCHH-----------HHHHHHHHhccCce-eCCCCc----
Confidence 3333221 22334444555689999999987643 55667777775322 111111
Q ss_pred CCCCCCCCeEEEEEecCC--------------------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 269 DASDSKPGYVLVIGATNR--------------------------PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~--------------------------~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.....+.++|+|||- ...+.|.+.. ||+.++.|.+.+.++..+|+...+
T Consensus 161 ---~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l 235 (315)
T d1qvra3 161 ---TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL 235 (315)
T ss_dssp ---CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred ---EecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHH
Confidence 011345899999995 2357888988 999999999999999999987554
Q ss_pred cCcc-------cC--Ccc-cHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHH
Q 045279 323 RNLR-------VE--GSF-DLVKIARS--TPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 323 ~~~~-------~~--~~~-~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
..+. .. ... .+..++.. .+.|-+|.+.+.+++.....+..
T Consensus 236 ~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~ 287 (315)
T d1qvra3 236 SYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 287 (315)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3321 11 111 24445543 56667788888888766665543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=1.7e-12 Score=125.00 Aligned_cols=194 Identities=15% Similarity=0.242 Sum_probs=122.1
Q ss_pred CCCCCccccc-C--HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 118 KEGPRFQDLG-G--MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 118 ~~~~~~~~i~-G--~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
++..||++++ | .+.+...+.+.+..+ + ...++++||||||||||.|++++++++ +..+++++.
T Consensus 4 n~~~tFdnF~vg~~N~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~ 72 (213)
T d1l8qa2 4 NPKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 72 (213)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCChhhccCCCcHHHHHHHHHHHHhCc----------C-CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEech
Confidence 3567999964 5 444555555544221 1 123559999999999999999999887 567888888
Q ss_pred hhhhcccccccHH-HHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEE-NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 192 ~~l~~~~~g~~~~-~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.++.......... ....+++.. ....+|+|||||.+.++... ...|...++....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~--~~~dll~iDDi~~i~~~~~~---------~~~lf~lin~~~~------------- 128 (213)
T d1l8qa2 73 DDFAQAMVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYL------------- 128 (213)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCHHH---------HHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHccchhhHHHHH--hhccchhhhhhhhhcCchHH---------HHHHHHHHHHHhh-------------
Confidence 8775543322211 112233222 23459999999998755322 1223333333222
Q ss_pred CCCCCCeEEEEEecCCCCCC---CccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCC
Q 045279 271 SDSKPGYVLVIGATNRPDAV---DPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFV 344 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~l---d~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~ 344 (702)
.+..+||++...|..+ .+.+.+ |+. .++.++ |+.++|.++++..+....+.-..+ +..+++.+. +
T Consensus 129 ----~~~~iiits~~~p~~l~~~~~dL~S--RL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~ 199 (213)
T d1l8qa2 129 ----LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--N 199 (213)
T ss_dssp ----TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--S
T ss_pred ----ccceEEEecCCcchhccccchHHHH--HhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--c
Confidence 2335666666666544 577877 764 456775 677899999999888777665544 555676653 5
Q ss_pred HHHHHHHHHHH
Q 045279 345 GADLAALANKA 355 (702)
Q Consensus 345 ~~dl~~l~~~a 355 (702)
.|+|..+++..
T Consensus 200 ~R~L~~~l~~l 210 (213)
T d1l8qa2 200 VREIEGKIKLI 210 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78887776653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.41 E-value=1.5e-13 Score=142.58 Aligned_cols=166 Identities=23% Similarity=0.370 Sum_probs=105.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--------------- 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------------- 184 (702)
.+.|.+|+|++.+|..|.-.+.. ....|+||+||||||||++|++++..+..
T Consensus 3 ~~~f~~I~Gq~~~kral~laa~~-------------~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~ 69 (333)
T d1g8pa_ 3 VFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 69 (333)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCChhhccCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence 44799999999999977644421 12357999999999999999999987621
Q ss_pred ------------------CeEEEechhhhcccccccHHH--H--------HHHHHHHHhhCCceEEechhhHhhhcchhh
Q 045279 185 ------------------PFYKISATEVVSGVSGASEEN--I--------RDLFSKAYRTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 185 ------------------~~~~i~~~~l~~~~~g~~~~~--~--------~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 236 (702)
+++......-.....|..... . .+.+..|. ..|+||||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~---~gvl~iDEi~~~~~----- 141 (333)
T d1g8pa_ 70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARAN---RGYLYIDECNLLED----- 141 (333)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHT---TEEEEETTGGGSCH-----
T ss_pred cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccc---ccEeecccHHHHHH-----
Confidence 111111111011111111000 0 11233332 34999999977653
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-CCCCccccCCCCcceEEEeCCC-CHHHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-DAVDPALRRPGRFDREIVLGVP-DENAR 314 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-~~ld~al~r~~Rf~~~i~~~~p-~~~er 314 (702)
.+++.|+..|++....+...+. ....|-++++|+|+|+. ..+++++++ ||+..+.++.| +...+
T Consensus 142 ------~~~~aLl~~me~~~v~i~r~g~------~~~~p~~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~~~~~ 207 (333)
T d1g8pa_ 142 ------HIVDLLLDVAQSGENVVERDGL------SIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETR 207 (333)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTC------CEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHH
T ss_pred ------HHHHHHhhhhcCCeEEecccCc------eecCCCCEEEEEecCccccccccchhh--hhcceeeccCcchhhHH
Confidence 4567799999976554432222 12234568999999995 479999999 99988988877 45666
Q ss_pred HHHHHH
Q 045279 315 VQILSV 320 (702)
Q Consensus 315 ~~Il~~ 320 (702)
.++...
T Consensus 208 ~~~~~~ 213 (333)
T d1g8pa_ 208 VEVIRR 213 (333)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=6.9e-13 Score=127.41 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=97.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+.++||+||||+|||++|+.+|+.+.. .+..+...+- . ..-....+|.+..
T Consensus 22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~--~~i~~~~ir~l~~ 98 (207)
T d1a5ta2 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (207)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc-c--cccccchhhHHhh
Confidence 45667999999999999999999997621 1222221110 0 0112345666666
Q ss_pred HHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+. .....|++|||+|.+. ...++.||..|+.. ..++++|++||.+..+.+++++ |+ ..+
T Consensus 99 ~~~~~~~~~~~kviIide~d~l~-----------~~a~n~Llk~lEep--~~~~~fIl~t~~~~~ll~tI~S--Rc-~~i 162 (207)
T d1a5ta2 99 KLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC-RLH 162 (207)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred hhhhccccCccceEEechhhhhh-----------hhhhHHHHHHHHhh--cccceeeeeecChhhhhhhhcc--ee-EEE
Confidence 543 2356799999999999 88999999999864 4678899999999999999998 99 799
Q ss_pred EcCCCCHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEA 608 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~ 608 (702)
.|++|+.++...+++.
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (207)
T d1a5ta2 163 YLAPPPEQYAVTWLSR 178 (207)
T ss_dssp ECCCCCHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHH
Confidence 9999999988777753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=8.2e-13 Score=137.90 Aligned_cols=198 Identities=28% Similarity=0.358 Sum_probs=121.4
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~ 496 (702)
.++.++|-+.-...+.+.+. .+...+.+|+||||+|||+++..+|... +..++.++.
T Consensus 20 ~ld~~~gr~~ei~~~~~~L~-------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~ 86 (387)
T d1qvra2 20 KLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 86 (387)
T ss_dssp CSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCCCcCcHHHHHHHHHHHh-------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 45667787766666655442 2445678999999999999999999854 567999999
Q ss_pred ccccc--cCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELLN--KYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~--~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+.++. +|.|+.+..+..++..+.... +.||||||++.+.+..+..++ ..+-+.|.-.|. ...+-+|++|.
T Consensus 87 ~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~---~d~a~~Lkp~L~----rg~~~~I~~tT 159 (387)
T d1qvra2 87 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIGATT 159 (387)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEEEC
T ss_pred hhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCc---ccHHHHHHHHHh----CCCcceeeecC
Confidence 99985 588999999999999887754 678999999999865433222 333444444443 45566777775
Q ss_pred C-----CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-----CHH---HHhhhhcCCCCCHHHHHH
Q 045279 574 R-----PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-----DLH---TIAQSKFCENLSGADLAA 640 (702)
Q Consensus 574 ~-----~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~---~la~~~~~~~~sg~dl~~ 640 (702)
. .+ -|++|.| ||. .|.++.|+.++-..|++.....+.....+ .+. .++.+.+.+.+=..-.-.
T Consensus 160 ~~ey~~~e-~d~al~r--rF~-~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAid 235 (387)
T d1qvra2 160 LDEYREIE-KDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 235 (387)
T ss_dssp HHHHHHHT-TCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred HHHHHHhc-ccHHHHH--hcc-cccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHH
Confidence 3 23 4899999 995 88999999999999998876543222111 122 233344555566666667
Q ss_pred HHHHHHHH
Q 045279 641 MMNEAAMA 648 (702)
Q Consensus 641 ~~~~a~~~ 648 (702)
++.+|+..
T Consensus 236 lld~a~a~ 243 (387)
T d1qvra2 236 LIDEAAAR 243 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.37 E-value=1.4e-12 Score=135.12 Aligned_cols=152 Identities=22% Similarity=0.319 Sum_probs=99.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc-----
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL----- 499 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l----- 499 (702)
...|.+|.|++.+|..+.-.... ....|+||+||||||||++|+.++..+.. +..+....+
T Consensus 3 ~~~f~~I~Gq~~~kral~laa~~-------------~~~h~vLl~G~pG~GKT~lar~~~~iLp~-~~~~~~~~~~~~~~ 68 (333)
T d1g8pa_ 3 VFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPE-IEAVEGCPVSSPNV 68 (333)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC-EEEETTCTTCCSSG
T ss_pred CCChhhccCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCccHHHHHHHHHHhCCC-chhhccCccccCcc
Confidence 34688999999998866432221 11247999999999999999999987731 111111110
Q ss_pred ---------------------cccCcCchHHHH------HH------------HHHHHHhCCCeEEEEeCcchhhcccCC
Q 045279 500 ---------------------LNKYVGESELAV------RT------------LFSRARTCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 500 ---------------------~~~~~g~~~~~~------~~------------~f~~a~~~~~~vl~iDEid~l~~~r~~ 540 (702)
.....+-+...+ .. .+..| ..+|+||||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A---~~gvl~iDEi~~~~----- 140 (333)
T d1g8pa_ 69 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARA---NRGYLYIDECNLLE----- 140 (333)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHH---TTEEEEETTGGGSC-----
T ss_pred ccccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccc---cccEeecccHHHHH-----
Confidence 000111111111 11 12222 45899999999998
Q ss_pred CCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCC-CccCccccCCCccceEEEcCCCC-HHHHHHHH
Q 045279 541 EGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRP-DVMDRAVLRPGRFGKLLYVPLPT-PDERGLIL 606 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~-~~ld~a~~r~gRf~~~i~~~~p~-~~~r~~il 606 (702)
.++++.|+..|+... -..++++|+|+|.. ..+.++++. ||+..+.++.|. .+.+..+.
T Consensus 141 ------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~~~~~~~~~ 211 (333)
T d1g8pa_ 141 ------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 211 (333)
T ss_dssp ------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhh--hhcceeeccCcchhhHHHHHH
Confidence 889999999998521 12457888888874 468999999 999999998774 45554444
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.34 E-value=1.8e-12 Score=134.70 Aligned_cols=189 Identities=24% Similarity=0.293 Sum_probs=112.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCccccc-----------------CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWL-----------------GVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~-----------------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.-|+|++++|+.+..++....++......+ .-.++.++||+||+|||||.+|++||+.++.+|
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ 96 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 96 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence 458999999999887663322111100000 134678899999999999999999999999999
Q ss_pred EEEechhhhcc-ccccc-HHHHHHHHHHH----HhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhcc
Q 045279 187 YKISATEVVSG-VSGAS-EENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 187 ~~i~~~~l~~~-~~g~~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~ 257 (702)
+.++++.+... |.|.. ...+..++..+ .....+|+++||++...+...... +.....+.+.||..+++...
T Consensus 97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~ 176 (364)
T d1um8a_ 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 176 (364)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCcee
Confidence 99999988653 54442 23345554432 344567999999999775432211 12334577788888886433
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCC-------------------------------------------------CC
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNR-------------------------------------------------PD 288 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~-------------------------------------------------~~ 288 (702)
.+..+.+... ...+.++|.|+|- ..
T Consensus 177 ~~~~~~gr~~------~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T d1um8a_ 177 NIPPKGGRKH------PEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 250 (364)
T ss_dssp C---------------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHT
T ss_pred ccCCCCCCcC------CcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhh
Confidence 2222111100 0112334444332 01
Q ss_pred CCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 289 AVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 289 ~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.+.|.|.. ||+.++.|.+.+.++..+|+..
T Consensus 251 ~f~PEf~g--Ri~~iv~f~~L~~~~l~~Il~~ 280 (364)
T d1um8a_ 251 GLIPELIG--RLPVLSTLDSISLEAMVDILQK 280 (364)
T ss_dssp TCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred hhHHHHHH--HhcchhhHhhhhHHHHHHHHHH
Confidence 25567766 9999999999999999999964
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=4.1e-12 Score=121.90 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEechhhhcc--
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISATEVVSG-- 197 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~~~l~~~-- 197 (702)
+++++.+++.+.+.. -+.++.+||+||||+|||++|+.+|+.+...- ...+|..+..+
T Consensus 6 w~~~~~~~l~~~~~~------------~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (207)
T d1a5ta2 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (207)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHc------------CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccc
Confidence 567778888766621 23456799999999999999999999873210 00111111111
Q ss_pred ----------c-ccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 198 ----------V-SGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 198 ----------~-~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
. ..-....++.+.+.+. .+...|++|||+|.|.... .+.|+..|++.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a-----------~n~Llk~lEep------- 135 (207)
T d1a5ta2 74 PDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA-----------ANALLKTLEEP------- 135 (207)
T ss_dssp TTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHH-----------HHHHHHHHTSC-------
T ss_pred cccchhhhhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhh-----------hHHHHHHHHhh-------
Confidence 0 0112334555555443 2345699999999987543 34688888863
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCC
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG 342 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g 342 (702)
+.++++|.+|+.+..+.|.+++ |+ ..+.|+.|+.++...+++... .. ....+..+++...|
T Consensus 136 ------------~~~~~fIl~t~~~~~ll~tI~S--Rc-~~i~~~~~~~~~~~~~L~~~~---~~-~~~~~~~i~~~s~G 196 (207)
T d1a5ta2 136 ------------PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG 196 (207)
T ss_dssp ------------CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT
T ss_pred ------------cccceeeeeecChhhhhhhhcc--ee-EEEecCCCCHHHHHHHHHHcC---CC-CHHHHHHHHHHcCC
Confidence 4569999999999999999999 98 789999999999888886432 11 12335556666554
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.25 E-value=3.5e-11 Score=127.92 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCccccc-CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-cccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWL-GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-VSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-~~g~ 201 (702)
-|+|++++|+.|.-++....++..+...+ .--.+.||||+||||||||.||+.||+.+++||+.++|+.++.. |.|.
T Consensus 15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~ 93 (443)
T d1g41a_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 93 (443)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeec
Confidence 48999999999987775433221111111 11246799999999999999999999999999999999988653 4444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.24 E-value=4.8e-11 Score=114.63 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=103.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
.+++||||+|||||+|++++++++ +..++.++..++...+...-.. ....+++..+ ...+|+||++|.+.++
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~-- 112 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGK-- 112 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTC--
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCc--
Confidence 458999999999999999999976 5677888877765543221111 1122222222 4579999999999854
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc---CccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM---DRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l---d~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
......|...++........+||.+...|..+ .+.+.+ |+. .++.++ |+.++|.+|++.++...+
T Consensus 113 -------~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~S--RL~~g~~~~i~-p~d~~~~~iL~~~a~~rg 182 (213)
T d1l8qa2 113 -------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-LDNKTRFKIIKEKLKEFN 182 (213)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-CCHHHHHHHHHHHHHHTT
T ss_pred -------hHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHH--HhhCceEEEEC-CCcHHHHHHHHHHHHHcC
Confidence 22233333333333334455666555566544 455655 664 456676 667889999999998877
Q ss_pred CCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 615 IDDSVD-LHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 615 ~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
+.-+.+ ++.++.+ +. +-+||..+++..
T Consensus 183 l~l~~~v~~yl~~~--~~--~~R~L~~~l~~l 210 (213)
T d1l8qa2 183 LELRKEVIDYLLEN--TK--NVREIEGKIKLI 210 (213)
T ss_dssp CCCCHHHHHHHHHH--CS--SHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh--cC--cHHHHHHHHHHh
Confidence 765433 4666632 21 457777777644
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=4.1e-10 Score=106.56 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=92.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhC------CeEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAG------ANFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDE 530 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDE 530 (702)
..+.++||+||||+|||++|+.+++... ..++.+.+.. . .-+-..+|.+...+.. ....|++|||
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~---~--~I~Id~IR~i~~~~~~~~~~~~~KviIId~ 87 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHD 87 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc---C--CCCHHHHHHHHHHHhhCcccCCCEEEEEeC
Confidence 3567899999999999999999998762 2477776532 1 1134567777776643 3446999999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCH
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~ 599 (702)
+|.+. ....|.||..|+.. ..++++|++||.++.+.|++.+ || ..+.|+.|..
T Consensus 88 ad~l~-----------~~aqNaLLK~LEEP--p~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~~ 140 (198)
T d2gnoa2 88 CERMT-----------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPKE 140 (198)
T ss_dssp GGGBC-----------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCHH
T ss_pred ccccc-----------hhhhhHHHHHHhCC--CCCceeeeccCChhhCHHHHhc--ce-EEEeCCCchH
Confidence 99999 89999999999964 4577888889999999999998 99 5888987764
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.06 E-value=6.8e-11 Score=116.21 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=112.4
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc---
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV--- 198 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~--- 198 (702)
+.||.+..++++.+.+.. ......+|+|+||+|||||++|++|.... ..+++.++|..+....
T Consensus 1 ~~v~~S~~~~~~~~~~~~-----------~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~ 69 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKK-----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 69 (247)
T ss_dssp CCCCCSHHHHHHHHHHHH-----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred CeEecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHH
Confidence 467888888888877743 23445679999999999999999998765 3578888887653321
Q ss_pred --ccc-------cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 199 --SGA-------SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 199 --~g~-------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.|. ......++|+.+.+ ++|||||||.+....+ ..|+..++... +...++...
T Consensus 70 ~lfg~~~~~~~~~~~~~~g~l~~a~g---GtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~-~~~~~~~~~--- 131 (247)
T d1ny5a2 70 ELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLEAQ-----------AKLLRVIESGK-FYRLGGRKE--- 131 (247)
T ss_dssp HHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHHHH-----------HHHHHHHHHSE-ECCBTCCSB---
T ss_pred HhcCcccCCcCCcccccCCHHHccCC---CEEEEeChHhCCHHHH-----------HHHHHHHHhCC-EEECCCCCc---
Confidence 110 00111345666543 4999999999875433 23555555322 111121111
Q ss_pred CCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHH----HHHHHhhcCc----ccCC---c-
Q 045279 270 ASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARV----QILSVLTRNL----RVEG---S- 330 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~----~Il~~~~~~~----~~~~---~- 330 (702)
...++++|++|+.+- .+++.|.. |+. .+.+..|+..+|. .|+..++... .... .
T Consensus 132 ----~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~ 204 (247)
T d1ny5a2 132 ----IEVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 204 (247)
T ss_dssp ----EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred ----eecCeEEEEecCCCHHHHHHcCCCcHHHHh--hcC-eeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCH
Confidence 123478999887631 35555555 553 3556667665553 3444444332 2111 1
Q ss_pred ccHHHHHhh-CCCCCHHHHHHHHHHHHH
Q 045279 331 FDLVKIARS-TPGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~~~~~la~~-t~g~~~~dl~~l~~~a~~ 357 (702)
..+..+... .+| +.++|++++.+|+.
T Consensus 205 ~al~~L~~~~WPG-Nl~EL~~~l~~a~~ 231 (247)
T d1ny5a2 205 SAQELLLSYPWYG-NVRELKNVIERAVL 231 (247)
T ss_dssp HHHHHHHHSCCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-HHHHHHHHHHHHHH
Confidence 113333322 233 55788888877754
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.04 E-value=9.4e-10 Score=107.86 Aligned_cols=183 Identities=18% Similarity=0.236 Sum_probs=109.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCc-------hHHHHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGE-------SELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~-------~~~~~~~~f~~a~~~~~~vl 526 (702)
...+++++|++|||||++|++++... ..+++.+++..+.... .|. .......+|+.| ..++|
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a---~gGtL 98 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA---DGGTL 98 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCcCCcccccCCHHHcc---CCCEE
Confidence 34568999999999999999999865 4578888887653220 000 000011234444 55899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCC-------ccCccccCCCccc-
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPD-------VMDRAVLRPGRFG- 589 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~-------~ld~a~~r~gRf~- 589 (702)
||||+|.+. ...+..|+..++... ...++.||++|+.+- .+++.++. |+.
T Consensus 99 ~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~--~l~~ 165 (247)
T d1ny5a2 99 FLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGV 165 (247)
T ss_dssp EEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTT
T ss_pred EEeChHhCC-----------HHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHh--hcCe
Confidence 999999998 777777777775311 112466888887641 34444444 443
Q ss_pred eEEEcCCCC--HHHHHHHHHHHhcc----CCCCCCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 590 KLLYVPLPT--PDERGLILEALARK----KPIDDSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 590 ~~i~~~~p~--~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
..|.+|+.. .++...|+..++.+ ..... ..+..-|...+ ...|.| ++|+++++.|+..+
T Consensus 166 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~-~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~----------- 233 (247)
T d1ny5a2 166 IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEV-EGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS----------- 233 (247)
T ss_dssp EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCC-CEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC-----------
T ss_pred eeecCCChhhchhhHhhhhhhhhhhhhhhcCCCC-CCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC-----------
Confidence 346666664 34566666666554 22211 11222221111 236777 79999999887432
Q ss_pred CCCCCccccHHHHHH
Q 045279 661 SDVTPFTIKLTHFEQ 675 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~ 675 (702)
....|+.+|+-.
T Consensus 234 ---~~~~I~~~dl~~ 245 (247)
T d1ny5a2 234 ---EGKFIDRGELSC 245 (247)
T ss_dssp ---CSSEECHHHHHH
T ss_pred ---CCCeECHHHccc
Confidence 112688888754
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.9e-10 Score=108.95 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=88.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG------VPFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEI 226 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEi 226 (702)
.+.++||+||||||||++|..+++.+. ..++.+.+..- .-.-..++.+...+.. +...|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~-----~I~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC-----CCCHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 467899999999999999999998763 24777765321 1123456666666542 23459999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEe
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVL 306 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~ 306 (702)
|.|.... .+.||..|++ .|.++++|.+|+.++.+.|.+++ |+ ..+.|
T Consensus 89 d~l~~~a-----------qNaLLK~LEE-------------------Pp~~t~fiLit~~~~~ll~TI~S--RC-~~i~~ 135 (198)
T d2gnoa2 89 ERMTQQA-----------ANAFLKALEE-------------------PPEYAVIVLNTRRWHYLLPTIKS--RV-FRVVV 135 (198)
T ss_dssp GGBCHHH-----------HHHTHHHHHS-------------------CCTTEEEEEEESCGGGSCHHHHT--TS-EEEEC
T ss_pred cccchhh-----------hhHHHHHHhC-------------------CCCCceeeeccCChhhCHHHHhc--ce-EEEeC
Confidence 9997543 4469999986 35668999999999999999999 99 77888
Q ss_pred CCCCH
Q 045279 307 GVPDE 311 (702)
Q Consensus 307 ~~p~~ 311 (702)
+.|..
T Consensus 136 ~~p~~ 140 (198)
T d2gnoa2 136 NVPKE 140 (198)
T ss_dssp CCCHH
T ss_pred CCchH
Confidence 87753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.96 E-value=1.1e-12 Score=131.74 Aligned_cols=46 Identities=35% Similarity=0.487 Sum_probs=40.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+...|.++||+||||||||++|+++|.+++.+|+.++++++...+.
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~ 73 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP 73 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhc
Confidence 4566889999999999999999999999999999999988876543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.81 E-value=1.2e-07 Score=93.91 Aligned_cols=187 Identities=15% Similarity=0.102 Sum_probs=113.1
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+...-++++|.++.++++.+. .+++++|+||+|+|||+|++.++..++..+..+++.......
T Consensus 7 p~~~~~~f~GR~~el~~l~~~-----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~ 69 (283)
T d2fnaa2 7 PKDNRKDFFDREKEIEKLKGL-----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 69 (283)
T ss_dssp CCCSGGGSCCCHHHHHHHHHT-----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCChhhCCChHHHHHHHHhc-----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccc
Confidence 333578999999999988742 236799999999999999999999999888888776543321
Q ss_pred cccc----------------------------------------------HHHHHHHHHHHH--hhCCceEEechhhHhh
Q 045279 199 SGAS----------------------------------------------EENIRDLFSKAY--RTAPSIVFIDEIDAIA 230 (702)
Q Consensus 199 ~g~~----------------------------------------------~~~~~~~f~~a~--~~~p~il~iDEid~l~ 230 (702)
.... ...+..+++... ...+.++++||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~ 149 (283)
T d2fnaa2 70 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred cccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhc
Confidence 1000 001222333322 2356789999998876
Q ss_pred hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---C------CCCccccCCCCcc
Q 045279 231 SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---D------AVDPALRRPGRFD 301 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~------~ld~al~r~~Rf~ 301 (702)
...... +...+...+... ..+..+.++... . .....+. +|+.
T Consensus 150 ~~~~~~-------~~~~l~~~~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 200 (283)
T d2fnaa2 150 KLRGVN-------LLPALAYAYDNL--------------------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAF 200 (283)
T ss_dssp GCTTCC-------CHHHHHHHHHHC--------------------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCC
T ss_pred ccchHH-------HHHHHHHHHHhh--------------------hhhhhhhccccchHHHHHHHhhhhcchhc--ccce
Confidence 543221 222222222221 113333333221 1 1111222 2555
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+.+++.+.++..+++...+....+.. ..+..+.+.+.|. +..|..++.
T Consensus 201 ~~i~L~~l~~~e~~~~l~~~~~~~~~~~-~~~~~i~~~~~G~-P~~L~~~~~ 250 (283)
T d2fnaa2 201 STVELKPFSREEAIEFLRRGFQEADIDF-KDYEVVYEKIGGI-PGWLTYFGF 250 (283)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCC-CCHHHHHHHHCSC-HHHHHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHhhhhhcCCCH-HHHHHHHHHhCCC-HHHHHHHHH
Confidence 7899999999999999988776554433 2466777778775 445554443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.70 E-value=2.4e-09 Score=106.55 Aligned_cols=68 Identities=26% Similarity=0.233 Sum_probs=52.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+|++.-+.+.+.+.+.+... . ..+...+.+|||+||||||||++|++||++++.+|+.++++.+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~ 72 (273)
T d1gvnb_ 5 NFTDKQFENRLNDNLEELIQ-G--------KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 72 (273)
T ss_dssp CCCHHHHHHHHHHHHHHHHT-T--------CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS
T ss_pred ccChHHHHHHHHHHHHHHHh-c--------ccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh
Confidence 56666666666666654432 1 12455678999999999999999999999999999999998876543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.49 E-value=7.5e-06 Score=80.43 Aligned_cols=186 Identities=17% Similarity=0.069 Sum_probs=104.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~ 506 (702)
.-+++.|-+...+.+.+ ...+.++++||+|+|||++++.++..++..+..+++..........
T Consensus 10 ~~~~f~GR~~el~~l~~-----------------~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~~~~ 72 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKG-----------------LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 72 (283)
T ss_dssp SGGGSCCCHHHHHHHHH-----------------TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred ChhhCCChHHHHHHHHh-----------------ccCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEecccccccccc
Confidence 44667777765554432 1346789999999999999999999998888777664432210000
Q ss_pred ----------------------------------------------hHHHHHHHHHHHH--hCCCeEEEEeCcchhhccc
Q 045279 507 ----------------------------------------------SELAVRTLFSRAR--TCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 507 ----------------------------------------------~~~~~~~~f~~a~--~~~~~vl~iDEid~l~~~r 538 (702)
....+..+++... ...+.++++||++.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~ 152 (283)
T d2fnaa2 73 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 152 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccc
Confidence 0001233333332 2467789999999987543
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC-------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP-------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~-------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
.... ...+..+. .. ...+..++++... ...+..-...+|+...+.+++.+.++..+++...+.
T Consensus 153 ~~~~----~~~l~~~~---~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~ 222 (283)
T d2fnaa2 153 GVNL----LPALAYAY---DN---LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 222 (283)
T ss_dssp TCCC----HHHHHHHH---HH---CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred hHHH----HHHHHHHH---Hh---hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhh
Confidence 2211 12222222 11 1233333333221 111111001236667899999999999999988877
Q ss_pred cCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 612 KKPIDDSVDLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 612 ~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
...+..+ +++.+. ..+.|.. .-|..++.
T Consensus 223 ~~~~~~~-~~~~i~--~~~~G~P-~~L~~~~~ 250 (283)
T d2fnaa2 223 EADIDFK-DYEVVY--EKIGGIP-GWLTYFGF 250 (283)
T ss_dssp HHTCCCC-CHHHHH--HHHCSCH-HHHHHHHH
T ss_pred hcCCCHH-HHHHHH--HHhCCCH-HHHHHHHH
Confidence 6555433 455555 4455653 34444443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.37 E-value=7.7e-07 Score=81.78 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=59.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc-----------------------c----------cccCcC------
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE-----------------------L----------LNKYVG------ 505 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~-----------------------l----------~~~~~g------ 505 (702)
.++++||||+|||||+++++..++.....+.... + ..++.-
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhh
Confidence 4799999999999999999998854321111100 0 000000
Q ss_pred -chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 506 -ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 506 -~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
......+..+..+....|.+|++||++...... ......+...+.. .+..+|++++...
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~--------~~~~~~l~~~l~~----~~~~il~~~h~~~ 141 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFS--------KKFRDLVRQIMHD----PNVNVVATIPIRD 141 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGC--------HHHHHHHHHHHTC----TTSEEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccchhh--------HHHHHHHHHHhcc----CCCEEEEEEccHH
Confidence 011234566677778899999999986544211 4455555555542 2345666776643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.17 E-value=3.6e-06 Score=77.07 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
.|+|+||||||||||++.|++.+..+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~ 27 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 48999999999999999999988543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2e-06 Score=77.42 Aligned_cols=30 Identities=33% Similarity=0.731 Sum_probs=27.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
++|+|+|||||||||+|+.||+.++.+++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 579999999999999999999999998863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.90 E-value=1.6e-05 Score=75.49 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|||||||.++++...
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCcchhhHhccCCC
Confidence 3455668899999999999999999743
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.84 E-value=3.1e-06 Score=77.90 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=32.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.+.|+|+|||||||||||++||+.++.+++......+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~ 44 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 44 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHh
Confidence 46799999999999999999999999988876655543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.84 E-value=0.0001 Score=72.50 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=38.1
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
-.+++|.+..++++.+.+... +-.....|.|+|..|+||||||+.+.+..
T Consensus 19 ~~~~~gR~~~~~~i~~~L~~~----------~~~~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 19 QMTCYIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceeCcHHHHHHHHHHHHhc----------cCCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence 445789999999998877321 11234568899999999999999998763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=4.9e-06 Score=74.72 Aligned_cols=31 Identities=29% Similarity=0.569 Sum_probs=28.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
++|+|.|||||||||+|+.||..++.+++..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~ 33 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 4689999999999999999999999998743
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.81 E-value=4.1e-06 Score=76.10 Aligned_cols=30 Identities=40% Similarity=0.789 Sum_probs=27.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
..|+|+|||||||||+|+.||+.++.+++.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~ 34 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYIN 34 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 358999999999999999999999988864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.78 E-value=3.5e-05 Score=74.52 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.++||+|+||||++++++...
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 4556668999999999999999998754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=3.1e-05 Score=74.21 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.++||+|+||||++++++..+
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456668999999999999999999855
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.76 E-value=5.6e-06 Score=74.75 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=27.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
+|+|+|+||+||||+++.||+.++.+|+.+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 589999999999999999999999998754
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.76 E-value=6.4e-06 Score=75.02 Aligned_cols=38 Identities=37% Similarity=0.559 Sum_probs=33.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
++-|+|.|||||||||+|++|++.++.+++.++...+.
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~ 41 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 41 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHH
Confidence 45589999999999999999999999999998876543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.71 E-value=7.7e-06 Score=74.49 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=27.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
++|+|+|+|||||||+++.||+.+|.+|+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id 32 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=2.7e-05 Score=75.25 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.++||+|+|||||+++++...
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4556668999999999999999998754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.70 E-value=3.4e-05 Score=74.48 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.+.++.-+.++||+|+||||++++++...
T Consensus 40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 40 SIEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 34556668999999999999999998744
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.69 E-value=1.9e-05 Score=75.43 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+-|.||+|+||||++++++...
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344557899999999999999999754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.68 E-value=1.4e-05 Score=75.68 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+|+||||++++++...
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 444558899999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=1e-05 Score=73.30 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=27.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|+|+|||||||+++.||+.++.+|+.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 378889999999999999999999998743
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=6.9e-06 Score=75.42 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=33.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
.+.|+|.|||||||||+|+.||+.++.+++......+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~ 44 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 44 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHh
Confidence 46799999999999999999999999999877665544
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=1.5e-05 Score=75.78 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+||||||++++++...
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3445568899999999999999999754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.63 E-value=1.8e-05 Score=75.45 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+-|.||+|+||||+.++++...
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 445557899999999999999999855
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.62 E-value=2.4e-05 Score=70.93 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=31.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+-|+|+||||+||||+|++|++.++.+++.++...+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~ 39 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchh
Confidence 458999999999999999999999999887765443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.62 E-value=1.7e-05 Score=71.80 Aligned_cols=31 Identities=39% Similarity=0.785 Sum_probs=27.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
..|+|.|||||||||+|+.||+.++.+++.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 4588999999999999999999999988753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.62 E-value=1e-05 Score=73.57 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=31.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
+-++|.|||||||||+|+.|++.++.+++.++...+
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 347899999999999999999999999999876544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.60 E-value=1.8e-05 Score=71.26 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
++|+|.|+||+||||+++.||+.++.+|+..
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 3689999999999999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.60 E-value=2.9e-05 Score=74.05 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|+||||++++++...
T Consensus 28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 3445568899999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=3.4e-05 Score=73.57 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+|+||||++++++...
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 444557899999999999999999744
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.57 E-value=2.3e-05 Score=71.09 Aligned_cols=29 Identities=41% Similarity=0.534 Sum_probs=25.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
+++.+|+|.|||||||||+++.||+.++.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 45567999999999999999999999864
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.57 E-value=2.8e-05 Score=71.17 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
|.+..+.++|+|||+||||+++.+|++.++..+
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~v 81 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 81 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhCCEE
Confidence 677789999999999999999999999987554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.56 E-value=2.4e-05 Score=71.11 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=28.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+++|.|+||+||||+++.+|+.+|.+|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 4689999999999999999999999998854
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=8.3e-05 Score=71.02 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+-|.||+|+||||+.++++...
T Consensus 26 ~~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 26 EEGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445557799999999999999999755
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.54 E-value=3.2e-05 Score=73.56 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHh
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.|.||+|+||||++++++..+
T Consensus 27 ~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 27 CVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 4588999999999999999855
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2.8e-05 Score=70.33 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=26.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+.-++|+|||||||||+|+.|++.++.+++.
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~ 36 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 36 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 4458889999999999999999999877654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.49 E-value=1.8e-05 Score=75.97 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.++||+|+||||++++++...
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556668899999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.48 E-value=2.8e-05 Score=70.26 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
-|+|+|||||||||+|+.|++.++..++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4899999999999999999999976543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=3e-05 Score=69.98 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=27.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.++|.|+|||||||+++.+|..++.+|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 478889999999999999999999999854
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.45 E-value=4.1e-05 Score=70.75 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
+..|+|.|||||||||+|+.||+.++..+ ++..++.
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~~~--i~~gdll 38 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCH--LATGDML 38 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHH
Confidence 44688999999999999999999997665 5555554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.44 E-value=0.00036 Score=64.80 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=24.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
+.-++|+||+|+||||.+--||..+ +..+..+.+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~D 43 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 43 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4567899999999999766666654 4555555443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.43 E-value=4.4e-05 Score=69.86 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=28.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.|+|.|||||||||+|+.||+.++..++ +..++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i--~~~~ll 35 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHI--STGDMF 35 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcee--chhHHH
Confidence 4899999999999999999999987765 444443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.42 E-value=0.00015 Score=67.35 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.|.||+|+||||+.++++..+
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 24 IEKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 3445557899999999999999999754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.40 E-value=5e-05 Score=68.71 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=25.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
+.+.+|+|.||||+||||+|+.||..++.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 44567999999999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=3.7e-05 Score=70.12 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=22.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l 182 (702)
++|+|+||||||||||++.++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999999887
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.39 E-value=0.00056 Score=65.25 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------------------ccccc
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------------------VSGAS 202 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------------------~~g~~ 202 (702)
|++++.-++|+||||+|||+++..+|... +..+.+++...-... .....
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 101 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence 67888999999999999999999887775 445555543211000 00111
Q ss_pred HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 203 EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 203 ~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...+..+........+.+++||.++.+...... ......+..|...+.
T Consensus 102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~---~~~~~~~~~l~~~~~ 149 (242)
T d1tf7a2 102 EDHLQIIKSEINDFKPARIAIDSLSALARGVSN---NAFRQFVIGVTGYAK 149 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceeeeecchhhhcCCCH---HHHHHHHHHHHHHHH
Confidence 223444555556678889999999988754322 222344444544444
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=4.7e-05 Score=69.77 Aligned_cols=29 Identities=41% Similarity=0.762 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+|+|.|||||||||+|+.||+.++..++.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~ 30 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 30 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 58999999999999999999999877654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.36 E-value=5.7e-05 Score=69.98 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=29.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.|.-|+|+||||+||||+|+.||+.++..+ ++..++.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~--i~~g~~~ 41 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVH--LSAGDLL 41 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCce--EchhhHH
Confidence 445689999999999999999999998654 5555543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.35 E-value=0.00014 Score=62.94 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=25.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
...+|.+|+|+|||+++-.++...+..++.+...
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~ 42 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 42 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence 4579999999999998876666666666655543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.34 E-value=3.9e-05 Score=70.84 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
|-.|+|.|||||||||+|+.||+.++.++ ++..++..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~--is~~~~~~ 39 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLLR 39 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcE--EehhHHHH
Confidence 44699999999999999999999998775 45555443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.34 E-value=5.1e-05 Score=68.91 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
.+..|+|+|+||+||||+|++||+.++.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4566899999999999999999999853
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=5.7e-05 Score=68.16 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=28.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
+.-++|.|||||||||+|+.||+.++.+++...
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 344788999999999999999999998776543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.31 E-value=0.00013 Score=66.54 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
|.+....++|+|||+||||++|.+|++.++..++...-+. +. |.........++++||+-..+
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~~N~~--s~------------F~Lq~l~~~kv~l~dD~t~~~ 111 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH------------FWLEPLTDTKVAMLDDATTTC 111 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC------------GGGGGGTTCSSEEEEEECHHH
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEeccCCC--CC------------cccccccCCeEEEEeccccch
Confidence 5566778999999999999999999999876554432211 11 111111133588999976554
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.31 E-value=0.00017 Score=68.89 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+-|.||+|+||||+.++++...
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344557899999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.31 E-value=7.7e-05 Score=67.45 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=29.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
+-|+|.||||+||||+|++|++.++.+++.+..
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~ 36 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence 457899999999999999999999988887764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.31 E-value=6.1e-05 Score=67.88 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=25.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
-|+|.|||||||||+|+.||..++..++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4789999999999999999999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.30 E-value=7.6e-05 Score=68.35 Aligned_cols=29 Identities=38% Similarity=0.646 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|.|||||||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 48999999999999999999999887654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.30 E-value=0.00029 Score=67.94 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+-|.||+|+||||++++++...
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 344457899999999999999999754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.30 E-value=5.6e-05 Score=69.79 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=30.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
|..|+|.|||||||||+|+.||+.++.+++ +..+++.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i--s~~~~~~ 39 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLLR 39 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEE--ehhHHHH
Confidence 567999999999999999999999987654 4444443
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.29 E-value=0.00023 Score=64.50 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=41.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEID 227 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid 227 (702)
+.+.-|+++|+|||||||+|+.++...+. ..++..++.. ...+...+..+...+ ..+++|..+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~~~--~~i~~D~~~~------~~~~~~~~~~~l~~g-~~vIiD~t~ 74 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY--VHVNRDTLGS------WQRCVSSCQAALRQG-KRVVIDNTN 74 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGGTC--EEEEHHHHCS------HHHHHHHHHHHHHTT-CCEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCC--EEEchHHHHH------HHHHHHHHHHHHHCC-CCceeeCcC
Confidence 45667999999999999999999887764 4455555422 223344444444433 356678654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.27 E-value=9.2e-05 Score=68.26 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=28.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
+..++|.||||+||||+|+.||..++..+ ++..+++
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~~~--i~~gdll 38 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCH--LATGDML 38 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHH
Confidence 34578899999999999999999998765 4444544
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00035 Score=64.91 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------c----ccccHHHHHHHHHH
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------V----SGASEENIRDLFSK 212 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------~----~g~~~~~~~~~f~~ 212 (702)
..+.-++|+||+|+||||.+--||..+ +..+..+++.....+ + ..+....+....+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345678899999999999877777665 456655555443221 0 11222334455555
Q ss_pred HHhhCCceEEechh
Q 045279 213 AYRTAPSIVFIDEI 226 (702)
Q Consensus 213 a~~~~p~il~iDEi 226 (702)
+......++|||=.
T Consensus 87 a~~~~~d~ilIDTa 100 (211)
T d2qy9a2 87 AKARNIDVLIADTA 100 (211)
T ss_dssp HHHTTCSEEEECCC
T ss_pred HHHcCCCEEEeccC
Confidence 65566679999976
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.27 E-value=6.7e-05 Score=69.31 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=29.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
-.|+|+||||+||||+++.||+.++..+ ++..++..
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~--is~gdllr 42 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLLR 42 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 4589999999999999999999998655 56666543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.27 E-value=0.00032 Score=68.58 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.++||+|+||||++++++..+
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3455568899999999999999999865
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.26 E-value=0.00039 Score=66.37 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=51.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--------------------------C--cCch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--------------------------Y--VGES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------------~--~g~~ 507 (702)
|++++.-++++||||+|||++|..+|... +.+++.+...+-... + ....
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 101 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence 57777889999999999999999888765 444555543211100 0 0111
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
...+..+........+.+++||-++.+..
T Consensus 102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~~ 130 (242)
T d1tf7a2 102 EDHLQIIKSEINDFKPARIAIDSLSALAR 130 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhcCCceeeeecchhhhc
Confidence 22234455555677889999999998874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.25 E-value=0.00044 Score=64.26 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=24.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
.-++|+||+|+||||.+--||..+ +..+..+.+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D 47 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 47 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 346889999999999777777654 5555555543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=8.6e-05 Score=67.89 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=27.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.|+|.||||+||||+|+.||+.++.++ ++..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~--i~~~d~~ 37 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAH--LATGDML 37 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--Eeccccc
Confidence 488999999999999999999998665 5555544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=8e-05 Score=69.08 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
..-|+|.||||+||||+|+.||+.++..+ ++..++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~--is~gdl~ 43 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVH--LSAGDLL 43 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEE--EEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE--EehhHHH
Confidence 34589999999999999999999997655 5555543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.23 E-value=0.00073 Score=62.80 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=36.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc----------------cCc----CchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN----------------KYV----GESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~----------------~~~----g~~~~~~~~~f~~ 517 (702)
+.|.-++|+||+|+||||.+--||..+ +..+..+.+..+.. -+. .+....+++....
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345668899999999999766666544 44444444432210 011 1122233344444
Q ss_pred HHhCCCeEEEEeCc
Q 045279 518 ARTCSPCILFFDEV 531 (702)
Q Consensus 518 a~~~~~~vl~iDEi 531 (702)
++.....+||||=.
T Consensus 90 ~~~~~~d~IlIDTa 103 (211)
T d1j8yf2 90 FLSEKMEIIIVDTA 103 (211)
T ss_dssp HHHTTCSEEEEECC
T ss_pred hhccCCceEEEecC
Confidence 55567789999943
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.0011 Score=61.57 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=46.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc----------------cCc----CchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN----------------KYV----GESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~----------------~~~----g~~~~~~~~~f~~ 517 (702)
..|.-++|+||+|+||||.+--||..+ +..+..+.+..+.. -+. .+....++.....
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345668899999999999776667654 45555555543221 011 1223345555666
Q ss_pred HHhCCCeEEEEeCcchhh
Q 045279 518 ARTCSPCILFFDEVDALT 535 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~ 535 (702)
++.....+||||=.....
T Consensus 87 a~~~~~d~ilIDTaGr~~ 104 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQ 104 (211)
T ss_dssp HHHTTCSEEEECCCCCGG
T ss_pred HHHcCCCEEEeccCCCcc
Confidence 666677899999655433
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00043 Score=66.93 Aligned_cols=120 Identities=24% Similarity=0.300 Sum_probs=65.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|++.+.-..|+||||+|||++|-.++... +..++.++...-+.. .....+..+..+-...+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~ 129 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 129 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence 45566667999999999999998777654 566677765432211 11223333332223344
Q ss_pred hCCCeEEEEeCcchhhcc---cCC---CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 520 TCSPCILFFDEVDALTTK---RGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~---r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
..++++|++|=+..+.+. +.. .......+.+..++..+-......++.+|++..-...+
T Consensus 130 ~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~ 194 (263)
T d1u94a1 130 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 194 (263)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-----
T ss_pred cCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEecc
Confidence 567889999998887642 111 11112234555555555444344556666555433333
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.0001 Score=67.18 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|.||||+||||+++.||+.++..++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 48899999999999999999999877643
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.19 E-value=0.00065 Score=65.75 Aligned_cols=120 Identities=25% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|++.++-..++||+|||||++|-.++... +..++.++...-++. .....++.+.-+-...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~ 132 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 132 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHh
Confidence 44555667899999999999999887654 666777776533221 11223333332222233
Q ss_pred hCCCeEEEEeCcchhhcccCCCC------chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 520 TCSPCILFFDEVDALTTKRGKEG------GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~------~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
...+++|++|=+.++.++..-.. -....+++..+++.+.......++.+|++.+-...+
T Consensus 133 ~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~ 197 (268)
T d1xp8a1 133 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 197 (268)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred cCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeecc
Confidence 45688999999998885433211 113456667777766665556667777775544443
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.19 E-value=0.00012 Score=67.64 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..|.-|++.||||+||||+|+.||+.++...+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~ 36 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 445668999999999999999999999865443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.18 E-value=0.00087 Score=63.39 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=26.9
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|+..+
T Consensus 27 l~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456788899999999999999999999876
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.16 E-value=0.00012 Score=66.87 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=28.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
.|+|.||||+||||+|+.||+.++..++. ..+++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~--~~~ll 35 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS--TGDMF 35 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceec--hhHHH
Confidence 47899999999999999999999876654 44444
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00036 Score=66.52 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=27.1
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++++..+.|+||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~ 54 (241)
T d2pmka1 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54 (241)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3467888999999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.15 E-value=0.00014 Score=64.03 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
-|+|+||||+||||+|+.|+.... .+..++..++
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 388999999999999999876643 3555665554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.15 E-value=0.00013 Score=67.62 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=30.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
.+.-|+|.|||||||||+|+.||+.++.++ ++..++..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~--is~g~llr 44 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLR 44 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCee--EeccHHHH
Confidence 345699999999999999999999987554 56666654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.14 E-value=0.00035 Score=65.06 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETG---VPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l 194 (702)
-|+++|.||+||||+|+.||+.++ .+...++...+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~ 41 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 41 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccce
Confidence 389999999999999999998874 45556665543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00067 Score=63.95 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|.||+|||||||+++|+...
T Consensus 21 l~i~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456788899999999999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=3.6e-05 Score=71.15 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
+..|+|+|+||+||||+|+.||..++.+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999998643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0001 Score=67.00 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=22.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++|+||||||||++++.++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999999877
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00015 Score=66.99 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=28.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.-|+|.||||+||||+|+.||+.++..+ ++..++.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~--i~~g~ll 36 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 36 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCce--EcHHHHH
Confidence 3489999999999999999999997554 5555554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.10 E-value=0.00064 Score=63.03 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+.-++|+||+|+||||.+--||..+ +..+..+++..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 34668999999999999877777665 45555555443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.00067 Score=63.17 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.++.-++|+||+|+||||.+--||..+ +..+..+++..
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence 355668999999999999877777655 45555555443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.09 E-value=0.0015 Score=60.51 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=26.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
++-++|+||+|+||||.+--||..+ +..+..+++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D 47 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 47 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 4557889999999999887777665 5566555554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.00016 Score=66.07 Aligned_cols=29 Identities=41% Similarity=0.610 Sum_probs=25.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.|+|.||||+||||+|+.||+.++...+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~ 30 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 30 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 47899999999999999999999876554
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.06 E-value=0.0052 Score=59.72 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=76.9
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC----C---eEEEEeccccccc-
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG----A---NFIHIKGPELLNK- 502 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~----~---~~~~i~~~~l~~~- 502 (702)
+.|.+...+.+.+.+... .-.....+.++|++|+|||++|+.+.+... . ..+-+..+.....
T Consensus 22 ~~gR~~~~~~i~~~L~~~----------~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~ 91 (277)
T d2a5yb3 22 CYIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 91 (277)
T ss_dssp SCCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred eeCcHHHHHHHHHHHHhc----------cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHH
Confidence 456565555555444221 222334577999999999999999987631 1 1223332211100
Q ss_pred --------------------C---cCchHHHHHH-HHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 503 --------------------Y---VGESELAVRT-LFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 503 --------------------~---~g~~~~~~~~-~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
. ........+. +........+++|+||+++... .+..+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~-------------~~~~~~---- 154 (277)
T d2a5yb3 92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-------------TIRWAQ---- 154 (277)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-------------HHHHHH----
T ss_pred HHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHh-------------hhhhhc----
Confidence 0 0111222222 2333445577899999987432 112111
Q ss_pred CCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 559 GADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 559 ~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
. ....||.||........ +.. +. ..+.++..+.++-.++|..+..
T Consensus 155 ~----~~srilvTTR~~~v~~~-~~~--~~-~~~~l~~L~~~ea~~Lf~~~~~ 199 (277)
T d2a5yb3 155 E----LRLRCLVTTRDVEISNA-ASQ--TC-EFIEVTSLEIDECYDFLEAYGM 199 (277)
T ss_dssp H----TTCEEEEEESBGGGGGG-CCS--CE-EEEECCCCCHHHHHHHHHHTSC
T ss_pred c----cCceEEEEeehHHHHHh-cCC--CC-ceEECCCCCHHHHHHHHHHHhC
Confidence 1 12245656664433222 111 22 3678899999998889876543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.06 E-value=0.00056 Score=63.64 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
+.+.-++|+||+|+||||.+--||..+ +..+..+++.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 49 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGAD 49 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEee
Confidence 356678999999999999877776655 4555555443
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.06 E-value=0.00015 Score=66.81 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=28.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
..|+|.||||+||||+|+.||..++..+ ++..+++
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~--is~gdll 41 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLL 41 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 3578999999999999999999998665 4554544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00077 Score=63.89 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+..+..+.|.||+|||||||+++|+...
T Consensus 26 l~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp EEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 456788899999999999999999998865
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.04 E-value=0.00018 Score=65.71 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=25.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.|+|.||||+||||+|+.||+.++..++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 37899999999999999999999876654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.04 E-value=0.0014 Score=56.39 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
....+|.+|+|+|||+++-.++...+..++.+...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~ 42 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 42 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence 35689999999999998877777777776665554
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.03 E-value=0.00034 Score=67.42 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+-|+||+|+||||++++++...
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 445557899999999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.03 E-value=0.00094 Score=62.87 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+.+..+..+.|+||+|||||||+++|+...
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence 3456788899999999999999999998865
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.00018 Score=66.50 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=25.6
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.-++|.||||+||||+|+.||+.++..++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is 38 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 347888999999999999999999876544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.001 Score=64.25 Aligned_cols=120 Identities=24% Similarity=0.282 Sum_probs=68.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHH-H
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSR-A 518 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~-a 518 (702)
|++.+.-..|+||||+|||++|-.++... +..++.++...-++. .....+..+ .+.+. .
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~-~~~~~l~ 134 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQAL-EIADMLI 134 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHH-HHHHHHH
Confidence 66777778999999999999987666543 666777776542221 112223322 22222 3
Q ss_pred HhCCCeEEEEeCcchhhcccC---C---CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 519 RTCSPCILFFDEVDALTTKRG---K---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~---~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+...+++|++|=+..+.++.. + ..-....+.+..++..+.......++.+|++..-...++
T Consensus 135 ~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~~ 201 (269)
T d1mo6a1 135 RSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIG 201 (269)
T ss_dssp HTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred hcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccCc
Confidence 345688999999988885321 1 111123455666666655544455667776654344333
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.03 E-value=0.0012 Score=62.58 Aligned_cols=30 Identities=40% Similarity=0.618 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|+||+|+||||++++|+...
T Consensus 24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 346678889999999999999999999875
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.0002 Score=65.27 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=27.4
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
.++|.||||+||||+|+.||..++..++ +..+++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~i--~~~d~~ 37 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDML 37 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceE--eccccc
Confidence 4788999999999999999999987654 444443
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.00 E-value=0.00044 Score=71.48 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=62.6
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech-hh
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISAT-EV 194 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~-~l 194 (702)
...++++++-.....+.+.+.+ ..+..-|||.||+|+||||+..++...++ .+++.+.-. +.
T Consensus 133 ~~~~l~~LG~~~~~~~~l~~l~--------------~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~ 198 (401)
T d1p9ra_ 133 TRLDLHSLGMTAHNHDNFRRLI--------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 198 (401)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHH--------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS
T ss_pred cchhhhhhcccHHHHHHHHHHH--------------hhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccc
Confidence 3457888887777777777554 23456699999999999999999988774 334333211 11
Q ss_pred hc------ccccccHHHHHHHHHHHHhhCCceEEechh
Q 045279 195 VS------GVSGASEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 195 ~~------~~~g~~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
.- ...+.........+..+.+..|.||+|.||
T Consensus 199 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEi 236 (401)
T d1p9ra_ 199 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 236 (401)
T ss_dssp CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred ccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCc
Confidence 00 011112223566777888999999999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.00 E-value=0.00059 Score=64.15 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=27.3
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.+.++.-+.|.||+|+||||++++|+..+.
T Consensus 21 ~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4567888899999999999999999998763
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.99 E-value=0.0011 Score=63.55 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.9
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|+||+|+|||||+++|++.+
T Consensus 36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 36 LKIPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 456788899999999999999999998875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.00023 Score=71.27 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEE-echhhh-------cccccccHHHHHHHHHHHHhhCCceEEechh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV--PFYKI-SATEVV-------SGVSGASEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i-~~~~l~-------~~~~g~~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
.+.++|++||+|+||||++++++..++. .++.+ +..++. ....+...-....++..+.+..|..+++.|+
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 3467999999999999999999988743 23322 111111 0011112224567888888999999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.0002 Score=67.43 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=28.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
-|.+.|||||||+|+|+.||+.++.++ ++..++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHH
Confidence 467779999999999999999997665 6666664
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.98 E-value=0.00066 Score=65.15 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++++..+.|+||+|+|||||++.|++.+.
T Consensus 39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 69 (255)
T d2hyda1 39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69 (255)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence 4567889999999999999999999987653
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.97 E-value=0.00024 Score=65.62 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=29.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
+.-|+|.||||+||||+|+.||+.++.++ ++..+++.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~--is~g~llr 44 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLR 44 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCee--EeccHHHH
Confidence 45588999999999999999999987654 55555543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00024 Score=65.49 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=27.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
.-++|.||||+||||+|+.||+.++... ++..++
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~--i~~g~l 35 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGEL 35 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCce--EcHHHH
Confidence 4578999999999999999999997655 444444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00019 Score=64.83 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
.-|+|+|+||+||||+|++||..++
T Consensus 7 ~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4478899999999999999999884
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00024 Score=64.62 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.5
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.||||+||||+|+.||+.++..++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 47899999999999999999999876554
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0013 Score=63.33 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=49.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------cccccHHHHHHHHHHH-
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------VSGASEENIRDLFSKA- 213 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a- 213 (702)
|++.+.-+.|+||||+|||+++-.++... +..+++++...-... .....+.. -.+.+..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~-~~~i~~l~ 128 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA-LEICDALA 128 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHH-HHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHH-HHHHHHHH
Confidence 67788889999999999999998876554 566677765532111 01112222 2333333
Q ss_pred HhhCCceEEechhhHhhh
Q 045279 214 YRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 214 ~~~~p~il~iDEid~l~~ 231 (702)
....+.+++||-+-.+.+
T Consensus 129 ~~~~~~liViDSi~al~~ 146 (263)
T d1u94a1 129 RSGAVDVIVVDSVAALTP 146 (263)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEECcccccc
Confidence 345678999999987764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0025 Score=59.19 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
.|.-++|+||+|+||||.+--||..+ +..+..+.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~ 47 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 47 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence 45568899999999999766666544 444444443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00058 Score=64.75 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..+.-+-|.||+|+||||+.++++..
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34555789999999999999999973
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.89 E-value=0.00046 Score=62.36 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=39.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVD 532 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid 532 (702)
+.|.-++++|+||+||||+|+.++...+..+ ++..++.. ...+......+..... .+++|...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~--i~~D~~~~------~~~~~~~~~~~l~~g~-~vIiD~t~ 74 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTLGS------WQRCVSSCQAALRQGK-RVVIDNTN 74 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGGTCEE--EEHHHHCS------HHHHHHHHHHHHHTTC-CEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCCEE--EchHHHHH------HHHHHHHHHHHHHCCC-CceeeCcC
Confidence 4456689999999999999999988777544 44444322 2233344444444333 45567544
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.88 E-value=0.00027 Score=66.63 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=27.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
|.+-|||||||||+|+.||+.++.++ ++..++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~--istGdl~ 38 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTY--LDTGAMY 38 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHH
Confidence 55679999999999999999998775 5555553
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.87 E-value=0.0015 Score=60.40 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=26.3
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++.-+.|+||+|+|||||.++|++.+
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 346678889999999999999999999875
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.87 E-value=0.00068 Score=58.21 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.4
Q ss_pred CCCCceEEEECCCCCCHHHHH
Q 045279 155 VRPMAGILLYGPPGCGKTKLA 175 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la 175 (702)
++.+.+++|++|||+|||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 345688999999999999655
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.86 E-value=0.0027 Score=59.70 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~ 191 (702)
|++++.-++|+|+||+|||+++..++.. -+..+++++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~ 63 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 6788999999999999999998765432 2445555554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.84 E-value=0.001 Score=62.86 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEecccccc--------------------------------c
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELLN--------------------------------K 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~l~~--------------------------------~ 502 (702)
|++++.-++|+|+||+|||++|..++.. .+..+..+...+-.. .
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 101 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchhh
Confidence 6778888999999999999999755432 244555544321100 0
Q ss_pred --CcC--chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 503 --YVG--ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 503 --~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
... .....+..+...+....+.++++|-+..+..... ......+.+..++..+
T Consensus 102 ~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~--~~~~~~~~~~~~~~~~ 158 (242)
T d1tf7a1 102 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYD--ASSVVRRELFRLVARL 158 (242)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTC--CHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhcc--ChhHHHHHHHHHHHHH
Confidence 001 1112233444445566789999999888774322 2222334444444444
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0014 Score=62.85 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|+||+|+|||||+++|++.+
T Consensus 35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 456788999999999999999999998865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.80 E-value=0.0017 Score=61.36 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.9
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++.+..+.|.||+||||||++++|+...
T Consensus 26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 26 INIENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 456788899999999999999999999865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0004 Score=65.31 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
-|.+.||||+||+|+|+.||+.++.++ ++..+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHH
Confidence 456779999999999999999998765 5544443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0013 Score=66.57 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.6
Q ss_pred ceEEEcCCCCChhHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAV 483 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~l 483 (702)
-.++.||||||||+++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 4689999999999987543
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.75 E-value=0.00044 Score=65.12 Aligned_cols=28 Identities=29% Similarity=0.625 Sum_probs=24.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
|.+-||||+||||+|+.||..++.+++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~is 33 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYLD 33 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 4566999999999999999999887544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.73 E-value=0.00092 Score=62.07 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=26.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
.=++++|.||+||||+|+.||+.+ +.+...++..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D 39 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence 347899999999999999999876 4445555543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.71 E-value=0.0021 Score=59.80 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=35.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechhhhccc
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISATEVVSGV 198 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~~~l~~~~ 198 (702)
..+.-|.|+|.||+||||+|+.|++.+ +.+++.+++..+...+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l 68 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL 68 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhh
Confidence 345679999999999999999998765 6788889988876653
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.70 E-value=0.00066 Score=61.51 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
+-|+|.|+|||||||+++.|+..++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999998853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.67 E-value=0.00054 Score=60.10 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=25.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
-++++||||+||||+|+.++.... .+..++..++
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 378899999999999998876543 3455554443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.64 E-value=0.0028 Score=61.13 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------cccccHHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------VSGASEENIRDLFSKAY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 214 (702)
|++.+.-+.|+||||||||++|..++... +..+++++...-... .....++. ..+++...
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~-~~~~~~l~ 131 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQA-LEIMELLV 131 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHH-HHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHH-HHHHHHHH
Confidence 67778889999999999999998885544 667777776532211 01112222 23333332
Q ss_pred -hhCCceEEechhhHhhhcc
Q 045279 215 -RTAPSIVFIDEIDAIASKR 233 (702)
Q Consensus 215 -~~~p~il~iDEid~l~~~~ 233 (702)
...+.+++||=+-.+.+..
T Consensus 132 ~~~~~~liIiDSi~al~~r~ 151 (268)
T d1xp8a1 132 RSGAIDVVVVDSVAALTPRA 151 (268)
T ss_dssp TTTCCSEEEEECTTTCCCST
T ss_pred hcCCCcEEEEecccccccHH
Confidence 3457899999998888533
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00047 Score=61.57 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
-+.|+|+||||||||++.|++.+ +..+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 48999999999999999999876 4444443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0041 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~ 181 (702)
.+.++|+||..+|||+++|.++-.
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~ 64 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALI 64 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHHHHH
Confidence 467999999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00026 Score=65.09 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
+.-|+|+|+||+||||+|+.||..++.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999999998843
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.56 E-value=0.0031 Score=59.43 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l 182 (702)
.-+.|.||+|+|||||+++|++.+
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999876
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0013 Score=66.71 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.8
Q ss_pred ceEEEECCCCCCHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAI 178 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~l 178 (702)
+-++|.||||||||+++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHH
Confidence 45999999999999987544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.0051 Score=58.16 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.+.++.-+-|.||+|+|||||.++|++.+.
T Consensus 23 ~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467788899999999999999999998763
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.52 E-value=0.0013 Score=56.34 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=16.6
Q ss_pred CCCcceEEEcCCCCChhHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIA 480 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la 480 (702)
..+...+|++|||+|||..+
T Consensus 5 ~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp STTCEEEECCCTTSSTTTTH
T ss_pred HcCCcEEEEcCCCCChhHHH
Confidence 44567899999999999765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00082 Score=61.46 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
++|+|+||+|+|||||++.|++.....+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 4599999999999999999999876544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.49 E-value=0.00088 Score=61.49 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+|+|+||+|+|||||++.|++..+..|.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~ 29 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG 29 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence 5999999999999999999998875553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.45 E-value=0.00066 Score=67.80 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=48.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh--CCeEEEEe-cccccc-------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA--GANFIHIK-GPELLN-------KYVGESELAVRTLFSRARTCSPCILFFDEVD 532 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~-~~~l~~-------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid 532 (702)
+.++++.||+|+||||+.++++... ...++.+. ..++.- .+.+..+-....++..+.+..|..|++.|+-
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR 245 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 245 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccC
Confidence 4679999999999999999999876 23444442 222210 0111222245678888888999999999975
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.43 E-value=0.0011 Score=60.27 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
++|.|+||+||||+++.|++.++..
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~ 28 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999998543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.39 E-value=0.0022 Score=66.08 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=59.2
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecc-cccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGP-ELLN 501 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~-~l~~ 501 (702)
..+++++-.....+.+++.+ ..+..-+|+.||+|+||||+..++...+. .+++.+.-+ ++.-
T Consensus 135 ~~l~~LG~~~~~~~~l~~l~--------------~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~ 200 (401)
T d1p9ra_ 135 LDLHSLGMTAHNHDNFRRLI--------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 200 (401)
T ss_dssp CCGGGSCCCHHHHHHHHHHH--------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred hhhhhhcccHHHHHHHHHHH--------------hhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccccc
Confidence 45666665555544444322 23444578889999999999998888763 455555422 2211
Q ss_pred c------CcCchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 502 K------YVGESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 502 ~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
. +.+.........+..+.+..|+||++.|+-.
T Consensus 201 ~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd 238 (401)
T d1p9ra_ 201 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 238 (401)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred CCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence 1 1122223456677778888999999999764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.38 E-value=0.0012 Score=63.98 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=27.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
+.+..+.++|+|||+||||+++.+|++.++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~ 130 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3456788999999999999999999999854
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.37 E-value=0.0025 Score=61.98 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=29.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|..+ +.++..++.
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 66777778999999999999988887532 566666653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.32 E-value=0.0054 Score=58.08 Aligned_cols=30 Identities=37% Similarity=0.341 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++.-+.|.||+|+||||+.++|+..+
T Consensus 27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356678889999999999999999998875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.31 E-value=0.0046 Score=59.50 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=50.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH---hCCCeEEEechhhhcc---------------cccccHHHHHHHHHHHH-
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATEVVSG---------------VSGASEENIRDLFSKAY- 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~---l~~~~~~i~~~~l~~~---------------~~g~~~~~~~~~f~~a~- 214 (702)
|++.+.-+.|+||||||||++|..++.. .+..+++++...-.+. +.-.+.+.+..+.+...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 7888999999999999999998776544 3666777766542211 00111222223333322
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+++||-+-.+.+
T Consensus 136 ~~~~~liIiDSi~al~~ 152 (269)
T d1mo6a1 136 SGALDIVVIDSVAALVP 152 (269)
T ss_dssp TTCEEEEEEECSTTCCC
T ss_pred cCCCCEEEEeccccccc
Confidence 34578999999988875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0064 Score=57.37 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=53.2
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-----CCe--------------EEEEecccccccCcCchH---HHHHHHHHHHHhC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-----GAN--------------FIHIKGPELLNKYVGESE---LAVRTLFSRARTC 521 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-----~~~--------------~~~i~~~~l~~~~~g~~~---~~~~~~f~~a~~~ 521 (702)
+.++++||++.|||++.|.+|-.. |.. |..+...+-+..-..... ..++.++..+.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-- 119 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT-- 119 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC--
T ss_pred eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcc--
Confidence 557999999999999999988632 221 122222222111111111 22344454443
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
..++++|||+-+=.. .. ....+...++..+. ...+..+|+||+..+...
T Consensus 120 ~~sLvliDE~~~gT~-----~~-eg~~l~~a~l~~l~---~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTS-----TY-DGLSLAWACAENLA---NKIKALTLFATHYFELTQ 168 (234)
T ss_dssp TTEEEEEESCCCCSS-----SS-HHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred cccEEeecccccCCC-----hh-hhhHHHHHhhhhhh---ccccceEEEecchHHHhh
Confidence 467999999875331 11 11233333343332 123456788888765433
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.23 E-value=0.0095 Score=57.58 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+++..+|.. .+.++..++.
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 6788888999999999999998888643 2566666654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0047 Score=59.75 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
.++.-.+|+|+||+|||+++-.+|..
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34455689999999999999888765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.15 E-value=0.014 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~ 181 (702)
+.++|+||...|||++.+.++-.
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHH
Confidence 35899999999999999988654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.10 E-value=0.0013 Score=59.43 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
-|+|.||||+||||+++.|+..++
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999873
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0015 Score=58.04 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=24.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i 494 (702)
-+.|+|++|+|||||++.|+..+ |..+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999999876 4444443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.021 Score=54.83 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|+.++.-.+|+|+||+|||+|+..+|..+
T Consensus 25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 25 NMVAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567789999999999999998887653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.02 E-value=0.0036 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
-|.|.||+|+||||||+.|+..++.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4669999999999999999987753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.99 E-value=0.0019 Score=58.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
++|.|+||+||||+++.|++.++
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999884
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.0027 Score=58.06 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.7
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
.|+|+||+|+|||++++.|++..+..|
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCce
Confidence 489999999999999999999876544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.97 E-value=0.005 Score=57.04 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLN 501 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~ 501 (702)
..+.-|.|+|.||+||||+|+.|+..+ +.+++.+++..+..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 445568899999999999999999765 67888888776544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.94 E-value=0.0022 Score=58.11 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
.-|+|+||+|+||||+++.|.+....
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 45899999999999999999988753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0056 Score=57.75 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccccc---------------------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNK--------------------------- 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~--------------------------- 502 (702)
|++++.-++|+||||||||+++..++... +.+++.+....-...
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECC
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEecc
Confidence 67888889999999999999998876532 345555544321110
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
....................+.++++|-+..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~ 143 (251)
T d1szpa2 110 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143 (251)
T ss_dssp STTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS
T ss_pred chhHHHHHHHHHHHHhhccccceeeehhhhhhhh
Confidence 0011122233344445566778888998877663
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.88 E-value=0.006 Score=58.78 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=38.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
+....++|+|||+||||+++.+++..++.- ..++.+. +. |..+......++++||...
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~-~~~~~~~--~~------------f~l~~l~~k~~~~~~e~~~ 159 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN--EN------------FPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC--SS------------CTTGGGSSCSEEEECSCCE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHhcch-hhccccC--CC------------ccccccCCCEEEEEeCCCc
Confidence 445668999999999999999999998653 2222111 11 2223333456888999763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0079 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.9
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.++|+|+||+|||+|..++..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999874
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.002 Score=59.77 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|++++.-++|+||||+|||+|+..+|...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999998764
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0027 Score=57.84 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=23.9
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
+.|+|+||+|+|||+|++.|++.....|
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 3589999999999999999999875443
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.74 E-value=0.015 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.1
Q ss_pred eEEEcCCCCChhHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~ 486 (702)
++|+|+||||||+|+..+...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0016 Score=61.83 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
|++++.-++|+||||||||+++..++..
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999888644
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0031 Score=60.02 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
|++++.-++|+||||||||+++..++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999864
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.59 E-value=0.037 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~ 486 (702)
-++++||+..|||++.|.++-.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHHH
Confidence 4799999999999999988753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.51 E-value=0.0065 Score=53.13 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
+++.-|+|.|+=|+||||++|++++.++..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 445569999999999999999999999754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.49 E-value=0.0027 Score=60.48 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|++++.-++|+||||||||+++-.++...
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 68888999999999999999999887654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.0055 Score=55.22 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=22.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
+.|+|+||+|+|||||++.|.+....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 46999999999999999999887543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.26 E-value=0.0047 Score=54.80 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=23.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 161 ILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
+.++|++|||||||+..|+.++ +..+..+
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi 35 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5699999999999999998876 4455444
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.25 E-value=0.012 Score=54.29 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=27.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
.+.+|.+|+|+|||.++-.++..++.+.+.+...
T Consensus 86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~ 119 (206)
T d2fz4a1 86 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 119 (206)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCcEEEeCCCCCceehHHhHHHHhcCceeEEEcc
Confidence 3467889999999999999999888777666553
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0053 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
-|-|.||+|+||||+++.|+..++.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 3678999999999999999999864
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.23 E-value=0.018 Score=52.99 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=25.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
+.++.+|+|+|||.++-.++..++.+.+.+-.
T Consensus 87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 45788999999999999888888777665554
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.051 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|+|+||+|||+|...+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999998876
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.032 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChhHHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~ 486 (702)
-+.|+|.||+|||+|+..+...
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999853
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.09 E-value=0.014 Score=53.44 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=16.3
Q ss_pred CcceEEEcCCCCChhHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAK 481 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~ 481 (702)
+.++++.+|+|+|||+++-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 4578999999999999874
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.06 E-value=0.037 Score=50.44 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=16.5
Q ss_pred CceEEEECCCCCCHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAH 176 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~ 176 (702)
+.++++.+|+|+|||+++.
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 4679999999999998764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.01 E-value=0.0034 Score=57.15 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.7
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC---CeEEEEec
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG---ANFIHIKG 496 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~ 496 (702)
|-+.||+|+||||+|+.|+..++ .....+..
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~ 58 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccccceeccc
Confidence 55899999999999999998763 34444443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.024 Score=54.64 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l 194 (702)
+.+--|-|.|++||||||++..|...+ ...+..++..++
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 334456689999999999999887665 335555666555
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.96 E-value=0.0043 Score=58.86 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.4
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|+||+|+|||||++.|++.+
T Consensus 23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356788899999999999999999998765
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0046 Score=60.09 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=27.4
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++++..+.|+||+|+|||||+++|++.+.
T Consensus 57 l~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 57 LNIEKGEMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence 4567889999999999999999999998664
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.96 E-value=0.013 Score=51.68 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=23.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~ 495 (702)
+-++|++|+|||||+..++..+ |..+..+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4589999999999999998876 44555543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.95 E-value=0.0086 Score=53.40 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+.+|||.|++|+|||++|-.+... +..++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 4678999999999999999888875 665543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.0061 Score=55.03 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.0
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
+-++|.||+|+||||+++.|.+...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4478999999999999999998864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.87 E-value=0.0069 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|+||||||+|++.+...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0059 Score=56.36 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|++++.-++++||||+|||++|..+|...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66777789999999999999999888754
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.81 E-value=0.036 Score=50.28 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=22.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHH----hCCeEEEEec
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKG 496 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~ 496 (702)
.+.|+++|+|+|||.++-.++.. .+..++.+.+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 35789999999999876666542 2444555544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.02 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l 182 (702)
...|-++||||+|||||+..++..+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998765
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.73 E-value=0.01 Score=55.99 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=22.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
+.++++.+|+|+|||+++-..+-.. +...+.+.+
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P 94 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP 94 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence 4578999999999998766555432 344444443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.68 E-value=0.06 Score=52.95 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=27.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---C--CCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---G--VPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~--~~~~~i~~~~l 194 (702)
..-|-+.||||+|||||...++..+ + .-++.++.+.-
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~ 92 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccH
Confidence 4558999999999999999998764 2 34566666543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.013 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.-++|+||+|+|||||.+.|.....
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999998865
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.61 E-value=0.0068 Score=57.21 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|++++.-++|.|+||+|||+++..+|...
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 47788899999999999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0091 Score=56.58 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|++++.-++++||||||||++|..+|...
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 67777889999999999999999888643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.53 E-value=0.014 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
|.|+|++|+||||+|+.|. ..|.+++
T Consensus 6 IgitG~~gSGKstva~~l~-~~g~~~~ 31 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLR-SWGYPVL 31 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH-HTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEE
Confidence 6688999999999999994 5777764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=94.45 E-value=0.0067 Score=58.00 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++++.-+.|+||+|+|||||+++|+....
T Consensus 23 ~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~ 53 (258)
T d1b0ua_ 23 LQARAGDVISIIGSSGSGKSTFLRCINFLEK 53 (258)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEcCCCEEEEECCCCCcHHHHHHHHHcCcc
Confidence 3567888999999999999999999987653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.40 E-value=0.036 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
...++|+|.||+|||+|+..+..
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.021 Score=55.74 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+.+--|.+.|++|+||||+|+.|+..+. ..+..++..++
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 4556788999999999999999999874 34556666555
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.30 E-value=0.0082 Score=56.92 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|++.+.-++++||||+|||+++-.+|...
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 57777789999999999999999887654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.24 E-value=0.017 Score=54.21 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCeEEEe
Q 045279 161 ILLYGPPGCGKTKLAHAIANET--GVPFYKIS 190 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l--~~~~~~i~ 190 (702)
+++.|++|+|||||+..|.+.+ +.....++
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 7899999999999999998765 33444444
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.015 Score=52.22 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
+.++|+||+|+|||+|++.|......
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 46899999999999999999887643
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.13 E-value=0.015 Score=51.50 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.+.+|||.|++|+|||++|-.+... +..+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~l 42 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR-GHRL 42 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence 4578999999999999999887766 5444
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.012 Score=54.32 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
+-+.||+|+||||+|+.|+..++.
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhch
Confidence 568899999999999999998864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.11 E-value=0.025 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+++.|++|+|||+|...+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999865
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.08 E-value=0.011 Score=53.95 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
.+.-|.|.|+.|+||||+++.|++.++...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3456899999999999999999999875443
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.06 E-value=0.013 Score=52.25 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
.+.+|||.||+|+|||++|-.+... +..++
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lv 43 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK-NHLFV 43 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence 4678999999999999999888754 55544
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.023 Score=52.34 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
.-|.|.|+.|+||||+++.|++.+ +.+++.+
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~ 37 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 447777999999999999999887 4555544
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.03 E-value=0.013 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|+||||||||.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.067 Score=46.84 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.9
Q ss_pred eEEEcCCCCChhHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~ 486 (702)
++|+|.+|||||+|+..+...
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988763
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.014 Score=50.85 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|+||+|||+|+..+.+.
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.014 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~ 181 (702)
++|+|+|+||+|||+|...+...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.051 Score=53.60 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~ 497 (702)
.-+-++||||+|||||...++..+ ...++.++++
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps 93 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 93 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCc
Confidence 346799999999999999998754 2345556544
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.87 E-value=0.18 Score=43.81 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.9
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.++|.|++|+|||+|+..+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998876
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.83 E-value=0.036 Score=48.21 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN 490 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~ 490 (702)
.++.-++|.|+=|+|||+++|.+++.++..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 444457899999999999999999999764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.78 E-value=0.015 Score=57.22 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=18.1
Q ss_pred ceEEEECCCCCCHHHH-HHHHHHHh
Q 045279 159 AGILLYGPPGCGKTKL-AHAIANET 182 (702)
Q Consensus 159 ~~vLl~GppGtGKT~l-a~~la~~l 182 (702)
.++++.|+||||||++ ++.++..+
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHHH
Confidence 5699999999999985 45555443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.017 Score=51.34 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+++|+||||||+|++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 899999999999999988654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.031 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|+||+|||||..+|.+.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.019 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.-|.|.|+.|+||||+++.|++.+
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999887
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.62 E-value=0.018 Score=52.93 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
|-|+|++||||||+++.+. .+|.+++ ++..+...
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vi--daD~i~~~ 38 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLV--DADVVARE 38 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEE--EHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEE--EchHHHHH
Confidence 5689999999999999886 5787765 45554433
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.61 E-value=0.011 Score=56.38 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++++.-+.|+||+|+|||||+++|+..+.
T Consensus 25 ~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~ 55 (254)
T d1g6ha_ 25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK 55 (254)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence 3456788899999999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.063 Score=47.02 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|||||+++..+..
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999998876
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.55 E-value=0.042 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=17.8
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
..+++..|+|+|||..+-...-
T Consensus 43 ~d~iv~a~TGsGKT~~~~l~~~ 64 (208)
T d1hv8a1 43 YNIVAQARTGSGKTASFAIPLI 64 (208)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCeeeechhcccccceeecccc
Confidence 4689999999999997765544
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.55 E-value=0.016 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|+||+|||+|++.+.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4999999999999999998654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.052 Score=52.25 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEeccccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPELL 500 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~ 500 (702)
+...|--+-+.|++|+||||++..|...+ ...+..++..+|.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 70 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence 33444445578999999999999887654 3456667776763
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.51 E-value=0.025 Score=51.12 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
-+-++|++|+||||+|+.+. +.|.+++.
T Consensus 5 IIgitG~~gSGKstva~~l~-~~g~~~~~ 32 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR-SWGYPVLD 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 35588999999999999994 57776653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.46 E-value=0.045 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.0
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.-++++|+||+|||+|+..+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999988754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.44 E-value=0.025 Score=50.30 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=24.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..++||.|++|+|||++|-.+... |..++.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 578999999999999999887764 655543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.44 E-value=0.02 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=17.3
Q ss_pred CceEEEECCCCCCHHHH-HHHHHH
Q 045279 158 MAGILLYGPPGCGKTKL-AHAIAN 180 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~l-a~~la~ 180 (702)
..++|+.|+||||||++ +..++.
T Consensus 14 ~~~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeeCCccHHHHHHHHHHH
Confidence 35689999999999985 444443
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.43 E-value=0.023 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|.||+|||+|+++|.+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.023 Score=52.35 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
|.|+|++|+||||+++.+. .+|.++ +++..+...
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~v--idaD~i~~~ 39 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINV--IDADIIARQ 39 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEE--EEHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcE--EEchHHHHH
Confidence 6699999999999999886 567654 455555444
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.01 Score=55.72 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=25.9
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
.+.++++.-+.|.||+|+|||||.++|+..
T Consensus 19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678889999999999999999999873
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.023 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
-++|+||+|+|||+|.+.|.....
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.39 E-value=0.038 Score=48.39 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|.|+||+|||+|+..+..
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988775
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.38 E-value=0.11 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..+..++|+|.||+|||++..+|...
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence 34567999999999999999999753
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.32 E-value=0.021 Score=50.22 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|+||+|||+|+..+..
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998875
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.11 Score=47.45 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.8
Q ss_pred CcceEEEcCCCCChhHHH
Q 045279 463 ETGFLLYGPPGCGKTLIA 480 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la 480 (702)
++.+++.+|+|+|||...
T Consensus 38 g~dvi~~a~tGsGKTlay 55 (206)
T d1s2ma1 38 GRDILARAKNGTGKTAAF 55 (206)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEecCCcchhhhhh
Confidence 357999999999999543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.05 Score=53.05 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPELL 500 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~l~ 500 (702)
.|--+-+.|++|+||||+|+.|+..+. ..+..+...++.
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~ 122 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence 344567899999999999999999873 456677776664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.031 Score=51.46 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=24.2
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~ 495 (702)
|.|.|+.|+||||+++.|++.+ +.+++.+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4556999999999999999976 66666654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=93.29 E-value=0.11 Score=44.18 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=39.1
Q ss_pred EEEcCCCCChhH-HHHHHHH--HhCCeEEEEecc-ccc-cc----CcCchH-----HHHHHHHHHHH----hCCCeEEEE
Q 045279 467 LLYGPPGCGKTL-IAKAVAN--EAGANFIHIKGP-ELL-NK----YVGESE-----LAVRTLFSRAR----TCSPCILFF 528 (702)
Q Consensus 467 ll~Gp~GtGKT~-la~~la~--~~~~~~~~i~~~-~l~-~~----~~g~~~-----~~~~~~f~~a~----~~~~~vl~i 528 (702)
+++||-.+|||+ |.+.+-+ ..+.+++.++.+ +-. +. -.|... .....++.... .....+|+|
T Consensus 6 ~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvI~I 85 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 85 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred EEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEeccchhhHHHHHhhccccCcCEEEe
Confidence 689999999999 6666633 447777766654 111 00 011100 01122333222 235689999
Q ss_pred eCcchhh
Q 045279 529 DEVDALT 535 (702)
Q Consensus 529 DEid~l~ 535 (702)
||+..+.
T Consensus 86 DE~QFf~ 92 (139)
T d2b8ta1 86 DEVQFFD 92 (139)
T ss_dssp CSGGGSC
T ss_pred chhhhcc
Confidence 9999875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.037 Score=51.13 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=28.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
+.-|.|.|+-||||||+++.|++.+...+..+.
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~ 35 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 35 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 456899999999999999999999987766554
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.24 E-value=0.017 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~ 180 (702)
..-|+|+|+||+|||||...+..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34599999999999999999854
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.061 Score=49.73 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.8
Q ss_pred CcceEEEcCCCCChhHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAK 481 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~ 481 (702)
+.++++..|+|+|||...-
T Consensus 49 g~dvl~~a~TGsGKTlayl 67 (218)
T d2g9na1 49 GYDVIAQAQSGTGKTATFA 67 (218)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEcccchhhhhhhh
Confidence 4679999999999998553
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.11 E-value=0.023 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|.|++|+|||+|++.+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.024 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|++|+|||+|++.+...
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.10 E-value=0.024 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|+..+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 999999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=0.15 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..++|+|+||+|||+|...|.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.089 Score=48.33 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=29.3
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCC---CCCcceEEEcCCCCChhHHHH
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV---DLETGFLLYGPPGCGKTLIAK 481 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~~~ll~Gp~GtGKT~la~ 481 (702)
.+|++++-.+.+.+.+.+. -+..+....+..+ -.+..+++..|+|+|||...-
T Consensus 10 ~sF~~l~l~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~ 65 (212)
T d1qdea_ 10 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 65 (212)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred cChhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhH
Confidence 4688886555555555431 1122211111111 124679999999999998543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.024 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|.+|+|||+|++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.98 E-value=0.02 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|+||+|||||+++|.+.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.027 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~ 181 (702)
..|+|+|+||+|||||..+|.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999765
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.89 E-value=0.093 Score=51.54 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
-+-+.||||+||||+...++..+ +..++.++++.
T Consensus 53 ~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss 91 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence 36799999999999999998754 34566666543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.026 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+++|++|+|||+|++.+...
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.81 E-value=0.021 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|++++.-++|+|+||+|||+++..+|..+
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46667778999999999999999998754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.028 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|||||+|++.+...
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.80 E-value=0.11 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+.+.|+||+|||+|++.+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999874
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.026 Score=50.66 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|++|||||+|++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 89999999999999998864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.71 E-value=0.028 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~ 181 (702)
..|+|+|.||+|||+|+..+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.025 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999999863
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.68 E-value=0.03 Score=51.20 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 161 ILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
|.|.|+.|+||||+++.|++.+ +.+++.+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~ 34 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 7889999999999999999877 4555554
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.039 Score=51.74 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=26.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
|.-|.|-|+-||||||+++.|++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 456999999999999999999999876544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.66 E-value=0.037 Score=51.19 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
...+|.|++|+|||||..+|.......
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~ 122 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLR 122 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhh
Confidence 458999999999999999997655433
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.03 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+++|.+|+|||+|++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.031 Score=49.16 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|.+|||||+|++.+..
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.038 Score=50.71 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=22.2
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+-++|++|+||||+++.+. .+|++++.
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~vid 32 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINVID 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence 4589999999999999886 67876553
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.54 E-value=0.1 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+++..+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.13 Score=44.87 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|+|||++++.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.48 E-value=0.033 Score=53.61 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=25.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
-|.+.|++|+||||++++|.+.+ +.....+...++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 48899999999999999998876 456666766665
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.45 E-value=0.051 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
...++++|+||+|||++.+.+..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999998864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.45 E-value=0.096 Score=45.97 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.9
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
-+++.|.+|||||+++..+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.029 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.||||||+|++.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999988653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.033 Score=49.32 Aligned_cols=20 Identities=40% Similarity=0.765 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|++|+|||+|++.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999998865
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.17 Score=46.05 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGP 497 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~ 497 (702)
.|++++-.+.+.+.+.+ .-+.++...+...++. ++.+++..|+|+|||...-.-.-.. +...+.+...
T Consensus 2 ~F~dl~L~~~l~~~l~~---~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~Pt 78 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVD---CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 78 (207)
T ss_dssp CSTTSCCCHHHHHHHHH---TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CccccCcCHHHHHHHHH---CCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEecc
Q ss_pred cccccCcCchHHHH-------------------------------------HHHHHHHHhCCCe-----EEEEeCcchhh
Q 045279 498 ELLNKYVGESELAV-------------------------------------RTLFSRARTCSPC-----ILFFDEVDALT 535 (702)
Q Consensus 498 ~l~~~~~g~~~~~~-------------------------------------~~~f~~a~~~~~~-----vl~iDEid~l~ 535 (702)
.-+...+.+.-..+ ..+....+...-. .+++||+|.+.
T Consensus 79 reL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll 158 (207)
T d1t6na_ 79 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 158 (207)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred chhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhh
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.. ......+-..+.......+++++-||
T Consensus 159 ~~---------~~~~~~i~~I~~~~~~~~Q~il~SAT 186 (207)
T d1t6na_ 159 EQ---------LDMRRDVQEIFRMTPHEKQVMMFSAT 186 (207)
T ss_dssp SS---------HHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred hc---------CCcHHHHHHHHHhCCCCCEEEEEeee
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.35 E-value=0.035 Score=48.62 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|++.+...
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.33 E-value=0.055 Score=49.27 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
|.|.|+.|+||||+++.|++.+ |.+++.+..+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P 37 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence 5678999999999999999876 6677666543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.031 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+++|+||+|||+|++.+...
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.31 E-value=0.035 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+++|.+|||||+|++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.031 Score=49.14 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|||||+|+..+...
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.28 Score=45.37 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH-h--CCCeEEEech
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE-T--GVPFYKISAT 192 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~-l--~~~~~~i~~~ 192 (702)
-.+..+.+++.+.+ ....+...||+|.+|+|||.++-..+.. + |..++.+-+.
T Consensus 58 ~~Q~~~~~~i~~~~-------------~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt 113 (233)
T d2eyqa3 58 PDQAQAINAVLSDM-------------CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 113 (233)
T ss_dssp HHHHHHHHHHHHHH-------------HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred hhHHHHHHHHHHHH-------------hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccH
Confidence 33555666666544 3344567999999999999986555433 2 5555555444
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.27 E-value=0.034 Score=49.36 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=23.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
..++||.||+|+|||++|-.+... |..++
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~-G~~lv 43 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK-NHLFV 43 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence 578999999999999999877653 55443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.034 Score=49.06 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+++|.+|||||+|++.+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999988865
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.26 E-value=0.31 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~ 500 (702)
-|-+.|++|+||||+++.+++.+ +.+...+...++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 36789999999999999998866 5566677776663
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.098 Score=46.10 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.8
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
-++++|.+|||||+|+..+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998775
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.23 E-value=0.03 Score=52.67 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=25.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechh
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATE 193 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~ 193 (702)
|.|+|+.||||||+|+.|+..+| +..+++++
T Consensus 4 IgiTG~igSGKsTva~~l~e~~g--~~~i~~aD 34 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNYS--AVKYQLAG 34 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSC--EEECCTTH
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--CeEEcccH
Confidence 78999999999999999998876 44555444
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.19 E-value=0.025 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|+||+|||||..+|.+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=92.19 E-value=0.094 Score=50.73 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCCCcceEEEcCCCCChhH
Q 045279 460 VDLETGFLLYGPPGCGKTL 478 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~ 478 (702)
+...+..++.+|+|+|||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 3456778999999999995
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.16 E-value=0.044 Score=48.33 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
..++||.|++|+|||++|-.+... |..+
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~-g~~l 42 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR-GHRL 42 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence 568999999999999999776654 4433
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.089 Score=48.05 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGP 497 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~ 497 (702)
.|++++-.+.+.+.+.+ .-+..+.......++. ++.+++..|+|+|||...-.-+-.. +...+.+...
T Consensus 4 ~F~~l~L~~~l~~~l~~---~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt 80 (206)
T d1veca_ 4 EFEDYCLKRELLMGIFE---MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp SGGGSCCCHHHHHHHHT---TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred ChhccCcCHHHHHHHHH---CCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeec
Q ss_pred cccccCcCchHHHH------------------------------------HHHHHHHHhCCCe-----EEEEeCcchhhc
Q 045279 498 ELLNKYVGESELAV------------------------------------RTLFSRARTCSPC-----ILFFDEVDALTT 536 (702)
Q Consensus 498 ~l~~~~~g~~~~~~------------------------------------~~~f~~a~~~~~~-----vl~iDEid~l~~ 536 (702)
.-+...+......+ ..+.......... .|++||+|.+..
T Consensus 81 ~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~ 160 (206)
T d1veca_ 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred chhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccc
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
......+-..+.......+++++.||
T Consensus 161 ----------~~f~~~i~~I~~~~~~~~Q~~l~SAT 186 (206)
T d1veca_ 161 ----------QDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp ----------TTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ----------cchHHHHHHHHHhCCCCCEEEEEEec
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.13 Score=44.82 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|+|||+|++.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 79999999999999998876
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.16 Score=46.93 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEE
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHI 494 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i 494 (702)
...+|++++-.+.+.+.|.+ .-+..+...+...++. +++++...|+|+|||...-.=.-.. +...+.+
T Consensus 15 ~~~sF~~l~L~~~l~~~L~~---~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil 91 (222)
T d2j0sa1 15 VTPTFDTMGLREDLLRGIYA---YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALIL 91 (222)
T ss_dssp CCCSGGGGCCCHHHHHHHHH---HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEE
T ss_pred CCCCHHHCCCCHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEe
Q ss_pred ecccccccCcCchHHHH-----------------------------------HHHHHHHHhCCCe-----EEEEeCcchh
Q 045279 495 KGPELLNKYVGESELAV-----------------------------------RTLFSRARTCSPC-----ILFFDEVDAL 534 (702)
Q Consensus 495 ~~~~l~~~~~g~~~~~~-----------------------------------~~~f~~a~~~~~~-----vl~iDEid~l 534 (702)
.++.-+...+...-..+ ..+.......... .|+|||+|.+
T Consensus 92 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~l 171 (222)
T d2j0sa1 92 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 171 (222)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred cchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHh
Q ss_pred hcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 535 TTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 535 ~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.. ......+...+.......+++++-||
T Consensus 172 l~----------~~f~~~i~~I~~~l~~~~Q~ilfSAT 199 (222)
T d2j0sa1 172 LN----------KGFKEQIYDVYRYLPPATQVVLISAT 199 (222)
T ss_dssp TS----------TTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hh----------cCcHHHHHHHHHhCCCCCEEEEEEEe
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.02 E-value=0.031 Score=49.55 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~ 180 (702)
-.|+++|+||+|||+|++.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998844
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.035 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|++|||||+|++.+...
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4999999999999999998753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.035 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.+|||||+|++.+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4999999999999999988653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.00 E-value=0.041 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|.+|||||+|++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999998753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.97 E-value=0.057 Score=50.39 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=23.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHh--CCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA--GANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~ 495 (702)
+++.||+|+||||+.+.+.+.+ +.....++
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 5789999999999999998765 33444443
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.041 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+++|++|+|||+|++.+...
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 999999999999999988663
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.041 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|+||+|||+|+..+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999888653
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.27 Score=46.46 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH---hCCCeEEEechh
Q 045279 129 MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATE 193 (702)
Q Consensus 129 ~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~---l~~~~~~i~~~~ 193 (702)
+..+++++...+ ....+.+-||+|..|||||.++-..+.. .|..+..+-+..
T Consensus 88 Q~~ai~ei~~d~-------------~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~ 142 (264)
T d1gm5a3 88 QKRAHQEIRNDM-------------ISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS 142 (264)
T ss_dssp HHHHHHHHHHHH-------------HSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred HHHHHHHHHHHh-------------hccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence 555666665544 3344567899999999999987655433 356665555543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.94 E-value=0.041 Score=50.40 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+-++|++|+||||+|+.+. ..|.+++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 4579999999999999886 57877664
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.32 Score=43.04 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.2
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|++.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.035 Score=48.91 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 899999999999999988653
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.21 Score=46.33 Aligned_cols=40 Identities=25% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE 498 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 498 (702)
....+...||+|.+|+|||.++-..+... |..++.+-+..
T Consensus 72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~ 114 (233)
T d2eyqa3 72 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 114 (233)
T ss_dssp HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHH
Confidence 44566788999999999999987665543 66666665543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.037 Score=48.40 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|.+|+|||+|++.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999875
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.87 E-value=0.029 Score=50.87 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=25.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
|.-|.+-|+.|+||||+++.|++.++...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~ 39 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 39 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 3457788999999999999999988765443
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.86 E-value=0.04 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.0
Q ss_pred cceEEEcCCCCChhHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..++|+|.||||||+|.+.+...
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999988763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.042 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+++|.+|+|||+|++.+...
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3999999999999999998753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.04 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred eEEEcCCCCChhHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~ 486 (702)
++|+|+||+|||+|+..+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.83 E-value=0.18 Score=43.75 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+|+..+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.038 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|.+|+|||+|++.+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 99999999999999998865
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.044 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.+|+|||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999988754
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.69 E-value=0.18 Score=47.68 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=29.6
Q ss_pred HcCCCCCcceEEEcCCCCChhHHHHHHHHH---hCCeEEEEeccc
Q 045279 457 EFGVDLETGFLLYGPPGCGKTLIAKAVANE---AGANFIHIKGPE 498 (702)
Q Consensus 457 ~~~~~~~~~~ll~Gp~GtGKT~la~~la~~---~~~~~~~i~~~~ 498 (702)
++....+...||+|..|+|||.++-..+.. .|..+..+-+.+
T Consensus 98 d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~ 142 (264)
T d1gm5a3 98 DMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS 142 (264)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred HhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence 334456677899999999999998766543 366665555543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.33 Score=42.62 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
-++++|.+|+|||++++.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998876
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.55 E-value=0.048 Score=48.02 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
-|+|+|.+|+|||+|++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 399999999999999998865
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.48 E-value=0.049 Score=47.95 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|.+|+|||+|++.+...
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999987654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.043 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+++|++|+|||+|+..+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999888764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=91.39 E-value=0.038 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
.|+|+|+||+|||||..+|.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 599999999999999999974
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.39 E-value=0.037 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIA 179 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la 179 (702)
+.+..-.|+|+|+||+|||+|++.+.
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHh
Confidence 34455679999999999999999874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.11 Score=45.47 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=18.1
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|++.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhC
Confidence 68999999999999998865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.05 Score=48.13 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|.+|+|||+|++.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.27 E-value=0.047 Score=51.17 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
|-|+|+.||||||+|+.+++..|+ ..++.++
T Consensus 4 IgiTG~igSGKsTva~~l~e~~g~--~~i~~aD 34 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNYSA--VKYQLAG 34 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCE--EECCTTH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC--eEEcccH
Confidence 578999999999999999988764 4454433
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.20 E-value=0.056 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.+|||||+|++.+...
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.048 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|++.+...
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999988753
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.13 E-value=0.052 Score=52.69 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.0
Q ss_pred CcceEEEcCCCCChhHHH
Q 045279 463 ETGFLLYGPPGCGKTLIA 480 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la 480 (702)
..++++.|+||||||+++
T Consensus 14 ~~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SSEEEECCCTTSCHHHHH
T ss_pred CCCEEEEeeCCccHHHHH
Confidence 456899999999999864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.054 Score=47.88 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|+||||||+++..+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.05 E-value=0.033 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~ 181 (702)
.-.|+++|+||+|||+|++.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999988643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.01 E-value=0.034 Score=49.28 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=8.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+|+|.+|||||+|++.+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999987764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.03 Score=52.36 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=24.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+-|.|-|+-||||||+++.|++.+....
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~~~ 30 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCEDWE 30 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999986443
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.053 Score=48.34 Aligned_cols=21 Identities=43% Similarity=0.809 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|.+|+|||+|++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999988664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.055 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHh
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|.|-|+.|+||||+++.|++.+
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6778999999999999999876
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.81 E-value=0.041 Score=48.76 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.2
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.-++|+|+||+|||+|...+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999998854
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.063 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.+|+|||+|++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999988764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.091 Score=48.29 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=25.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
|.|-|+-|+||||+++.|++.+......+.
T Consensus 6 I~iEG~DGsGKST~~~~L~~~L~~~~~~~~ 35 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLK 35 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 678899999999999999999976655554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=90.56 E-value=0.16 Score=42.97 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=40.0
Q ss_pred EEEECCCCCCHHH-HHHHH--HHHhCCCeEEEechhhhcc--c----cccc-----HHHHHHHHHHHHh----hCCceEE
Q 045279 161 ILLYGPPGCGKTK-LAHAI--ANETGVPFYKISATEVVSG--V----SGAS-----EENIRDLFSKAYR----TAPSIVF 222 (702)
Q Consensus 161 vLl~GppGtGKT~-la~~l--a~~l~~~~~~i~~~~l~~~--~----~g~~-----~~~~~~~f~~a~~----~~p~il~ 222 (702)
=+++||-.+|||+ |.+.+ ....+.+++.++.+.-... . .|.. -.....++..... ....+++
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvI~ 84 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 84 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEeccchhhHHHHHhhccccCcCEEE
Confidence 3789999999999 67766 3345777777766522111 0 0100 0111223332221 2456999
Q ss_pred echhhHhh
Q 045279 223 IDEIDAIA 230 (702)
Q Consensus 223 iDEid~l~ 230 (702)
|||+..+.
T Consensus 85 IDE~QFf~ 92 (139)
T d2b8ta1 85 IDEVQFFD 92 (139)
T ss_dssp ECSGGGSC
T ss_pred echhhhcc
Confidence 99998874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.061 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|+|.+|+|||+|++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3899999999999999988754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.034 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~ 180 (702)
|+++|++|+|||+|++.+..
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999988754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.31 E-value=0.069 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEcCCCCChhHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~ 486 (702)
++++|++|+|||+|+..+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 799999999999999988763
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.065 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
.|+|+|.||+|||||..+|.+.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.065 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|+|+|++|+|||+|+..+...
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999887654
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.12 E-value=0.14 Score=46.68 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGP 497 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~ 497 (702)
.|++++-.+.+.+.|.+ ..+.++...++..++. +.++++..|+|+|||...-.-+-.. ....+.+...
T Consensus 2 ~F~~l~L~~~l~~~l~~---~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~ 78 (209)
T d1q0ua_ 2 QFTRFPFQPFIIEAIKT---LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 78 (209)
T ss_dssp CGGGSCCCHHHHHHHHH---TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccccCCcCHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccc
Q ss_pred cccccCcCchHHHH---------------------------------------HHHHHHHHhCCCe-----EEEEeCcch
Q 045279 498 ELLNKYVGESELAV---------------------------------------RTLFSRARTCSPC-----ILFFDEVDA 533 (702)
Q Consensus 498 ~l~~~~~g~~~~~~---------------------------------------~~~f~~a~~~~~~-----vl~iDEid~ 533 (702)
.............. ..+.......... .++|||+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ 158 (209)
T d1q0ua_ 79 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred cchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeeccc
Q ss_pred hhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 534 LTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 534 l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
+.. ......+-..+.......++++..||
T Consensus 159 ll~----------~~f~~~v~~I~~~~~~~~Q~il~SAT 187 (209)
T d1q0ua_ 159 MLD----------MGFITDVDQIAARMPKDLQMLVFSAT 187 (209)
T ss_dssp HHH----------TTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ccc----------cccHHHHHHHHHHCCCCCEEEEEEcc
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.11 E-value=0.61 Score=44.20 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=21.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
-+++.++|+.|+|||+|+.++....
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~ 30 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYT 30 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999997644
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.094 Score=53.75 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc--------ccCCCccceEEE
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA--------VLRPGRFGKLLY 593 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a--------~~r~gRf~~~i~ 593 (702)
.|.++++||+..+..- ..+..++.+. ...++-++++|..+..|... ++. -|...|.
T Consensus 276 ~~v~l~lDE~~~~~~~----------~~l~~~l~~~----Rk~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~--n~~t~i~ 339 (433)
T d1e9ra_ 276 RRLWLFIDELASLEKL----------ASLADALTKG----RKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFRSLVV 339 (433)
T ss_dssp CCEEEEESCGGGSCBC----------SSHHHHHHHC----TTTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCCEEEE
T ss_pred CceEEEechHhhhccc----------HHHHHHHHHh----CCCCceEEEEeccHHHHHHHHhHHHHHHHHH--hcCcEEE
Confidence 4567889999987631 1244455444 45678888888877666432 333 4666666
Q ss_pred cC--CCCHHHHHHHHHHHhc
Q 045279 594 VP--LPTPDERGLILEALAR 611 (702)
Q Consensus 594 ~~--~p~~~~r~~il~~~~~ 611 (702)
+. .++.+... .+..++.
T Consensus 340 ~~~~~~d~~tae-~~s~~~G 358 (433)
T d1e9ra_ 340 LGGSRTDPKTNE-DMSLSLG 358 (433)
T ss_dssp EECCTTCHHHHH-HHHHHHC
T ss_pred ecCCCCCHHHHH-HHHHHhC
Confidence 54 45666544 4444443
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.86 E-value=0.078 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.3
Q ss_pred eEEEcCCCCChhHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~ 486 (702)
+.|.|.||+|||+|+.++...
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999865
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.85 E-value=0.06 Score=48.08 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
.|.|+|+||+|||||..+|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999854
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.081 Score=46.41 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|++|||||+|+..+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=0.15 Score=49.07 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
..|+-+++.|..|+||||++-.+|..+ |..+..+++.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456778899999999999999888866 6677766643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.75 E-value=0.089 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~ 181 (702)
.-.|.|+|.+|+|||||+.+|.+.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345999999999999999999754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.076 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.7
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|+|++|+|||+|++.+..
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.061 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~ 180 (702)
....|.|+|+|++|||+|.++|.+
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 445699999999999999998843
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.083 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|+..+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.54 E-value=0.093 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.6
Q ss_pred CcceEEEcCCCCChhHHH-HHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIA-KAVANE 486 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la-~~la~~ 486 (702)
..++++.|+||||||+++ ..++..
T Consensus 24 ~g~~lV~g~aGSGKTt~l~~ri~~l 48 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVLTHRIAYL 48 (318)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHHHHH
Confidence 456899999999999865 334443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=0.35 Score=43.64 Aligned_cols=30 Identities=20% Similarity=-0.014 Sum_probs=21.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
++++++.-|+|+|||..+....-......+
T Consensus 40 g~~vlv~apTGsGKT~~~~~~~~~~~~~~~ 69 (206)
T d1oywa2 40 GRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69 (206)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHSSSEEE
T ss_pred CCCEEEEcCCCCCCcchhhhhhhhccCceE
Confidence 467999999999999987655444333333
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.45 E-value=0.062 Score=47.74 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
.|.|+|.||+|||||+.+|.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.09 Score=46.28 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|++|+|||+|+..+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.095 Score=45.83 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|.|.+|||||+|+..+..
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.095 Score=45.98 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|+|||+|+..+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998885
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.15 E-value=0.16 Score=45.61 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=22.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEec
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE----TGVPFYKISA 191 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~ 191 (702)
+++|+++|+|+|||.++-.++.. .+..++.+.+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45899999999999876655542 2444555544
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.12 Score=48.06 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=24.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
|+=|.|-|+-|+||||+++.|++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 344788999999999999999999865443
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.092 Score=46.13 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|+|.+|||||+|++.+..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999998876
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.09 E-value=0.032 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~ 181 (702)
|.|+|.||+|||||+.+|.+.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.25 Score=45.43 Aligned_cols=23 Identities=48% Similarity=0.508 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 045279 160 GILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l 182 (702)
-.+|.|.-|+|||||.+.+.+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcC
Confidence 37899999999999999987754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.13 Score=52.52 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
.+|++++|+||+|||++++.+...+ +.+++.++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4689999999999999987665543 677777764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.99 E-value=0.025 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~ 183 (702)
-.+|+||.|+|||++..||.-.+.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 367889999999999999987663
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.89 E-value=0.086 Score=46.75 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.2
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.++|+|+||+|||+|..+|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999975
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.78 E-value=0.098 Score=45.64 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||++++.+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.76 E-value=0.098 Score=47.02 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAI 178 (702)
Q Consensus 161 vLl~GppGtGKT~la~~l 178 (702)
|+|.|.+|+|||+|++.+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999988
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.1 Score=45.69 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=18.0
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|||||+|+..+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.1 Score=45.51 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.0
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
-+++.|++|||||+|+..+..
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.11 Score=45.42 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|++|+|||++++.+..
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999998766
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=0.11 Score=45.78 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+++..+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999998875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.36 E-value=0.087 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
..-+|+|+|.||+||||+..+|.+.
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Confidence 3467999999999999999999764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.30 E-value=0.12 Score=45.98 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|||||+|+..+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.22 E-value=0.067 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=22.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
=|.+-|+.|+||||+++.|++.+..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3688999999999999999998854
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.14 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~ 181 (702)
-.|+++|++|+|||+|+..+...
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999988664
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.95 E-value=0.13 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|.+|||||+|++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998876
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.12 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~ 486 (702)
-+++.|++|+|||+|+..+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.12 Score=44.87 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+|++.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.13 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++++|++|+|||+++..+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999988765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.81 E-value=0.09 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~ 183 (702)
--+|+||.|+|||++.+||+-.++
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~lg 49 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 468999999999999999975443
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=87.77 E-value=0.14 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.2
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+.|+|+||+|||+|..+|.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 489999999999999999974
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.53 E-value=0.14 Score=45.09 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.1
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|.|.+|+|||+|+..+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.35 E-value=0.039 Score=51.21 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=19.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+...+|.|++|+|||||+.+|.....
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred cceEEEECCCCccHHHHHHhhccHhH
Confidence 34578999999999999999975543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=0.13 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|+..+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.31 E-value=0.15 Score=44.61 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.1
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+|+..+..
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.24 E-value=0.11 Score=46.14 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVA 484 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la 484 (702)
+.....-++++|++|+|||+|.+.+.
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHh
Confidence 44555678999999999999998774
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.19 E-value=0.14 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~ 180 (702)
.-|||.|++|+|||+|++.+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3499999999999999998853
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.14 E-value=0.3 Score=46.72 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.++-+++.|.-|+||||++-++|..+
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA~~l 32 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATAIRL 32 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcChHHHHHHHHHHHH
Confidence 35678999999999999999998776
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.15 Score=45.26 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
--++++|.+|+|||+|+..+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999988876
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=87.09 E-value=0.17 Score=45.84 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=22.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
.++++.-|+|+|||.++...........+.+.
T Consensus 41 ~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v~ 72 (206)
T d1oywa2 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCEEEEcCCCCCCcchhhhhhhhccCceEEec
Confidence 56899999999999988665554444443333
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.047 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
.+|+||+|+|||++..+|...+.
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999998763
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.66 E-value=0.13 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
-+|+||+|+|||++..|++..++
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~~lg 49 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKWVFG 49 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 48999999999999999987553
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.66 E-value=0.16 Score=45.06 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.3
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
++|.|.+|+|||+|++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.69 Score=42.29 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.2
Q ss_pred eEEEcCCCCChhHHHHHHHHHh
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.|.-|+||||+.+.+....
T Consensus 6 ~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEeeCCCCCHHHHHHHHHhcC
Confidence 6899999999999999887754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=86.51 E-value=1.3 Score=38.58 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.1
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
++-++|+|++|||||..+|..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 578999999999999999974
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.45 E-value=0.11 Score=45.81 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=8.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|||||+|+..+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.32 E-value=0.29 Score=44.40 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=25.4
Q ss_pred ceEEEECC-CCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 159 AGILLYGP-PGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 159 ~~vLl~Gp-pGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
+.++++|- +|+||||++-.||..+ |..+..++.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 35889998 5999999988887766 566666653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.27 E-value=0.18 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
...+|.|++|+|||+|..+|....
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchh
Confidence 456899999999999999986543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.85 E-value=0.18 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~ 181 (702)
-|+|.|..|+|||+|++.+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.84 E-value=0.18 Score=44.78 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|.+|+|||+|+..+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999998876
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.82 E-value=1.6 Score=41.09 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=37.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHh---------CCCeEEEEe
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRART---------CSPCILFFD 529 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~~~vl~iD 529 (702)
.-+++.|++|||||+|+.-++... +..+..+- -+|+....+..++..... ....++|.-
T Consensus 69 Qr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~-------~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~ 139 (276)
T d2jdid3 69 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMIESGVINLKDATSKVALVYG 139 (276)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE-------EESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEE
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE-------EeccChHHHHHHHHHHHhcCccccccccceEEEEEE
Confidence 348999999999999999888763 22222221 257766666666655432 235677763
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.79 E-value=0.31 Score=46.29 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
.+-+++.|..|+||||++-.||..+ |..++.+++.
T Consensus 20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3446788999999999888777655 6677777654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.73 E-value=0.099 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.4
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|+..+..
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.18 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.0
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
+++.|++|+|||+|+..+..
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.70 E-value=0.73 Score=40.66 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
-+++.|.+|+|||+++..+...-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999886643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.13 Score=45.42 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
....|.|+|+|++|||+|..+|..
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999998853
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=85.13 E-value=2.4 Score=42.38 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=45.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE 193 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~ 193 (702)
.|..-+-+-.++++|.+.+.. ..+..+|.|-+|+|||.++.++++..+.+++.|....
T Consensus 9 ~~~p~gDQP~aI~~l~~~l~~--------------g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~ 66 (413)
T d1t5la1 9 PYEPQGDQPQAIAKLVDGLRR--------------GVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK 66 (413)
T ss_dssp SSCCCTTHHHHHHHHHHHHHH--------------TCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSH
T ss_pred CCCCCCCCHHHHHHHHHHHhc--------------CCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 455556677778888876621 1356889999999999999999999999998887664
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.21 Score=43.85 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=18.5
Q ss_pred eEEEcCCCCChhHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~ 485 (702)
|+|.|.||+|||+|..+|.+
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999975
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.14 E-value=0.3 Score=46.61 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+..++|.|++|||||+|+..+++..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 34559999999999999999998754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.05 E-value=0.23 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
-|.|-|+-|+||||+++.|++.++.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 4889999999999999999998853
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=0.68 Score=44.00 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.-+++.|++|||||+++..+++..
T Consensus 43 GQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 43 GQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp TCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3448999999999999999998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.94 E-value=0.3 Score=49.28 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=21.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
+.--+|+||.|+|||++..||+=.++.
T Consensus 25 ~~l~~i~G~NGsGKS~ileAi~~~lg~ 51 (427)
T d1w1wa_ 25 SNFTSIIGPNGSGKSNMMDAISFVLGV 51 (427)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334589999999999999999765543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.93 E-value=1.2 Score=41.98 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=33.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhcccccccHHHHHHHHHHHHh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYR 215 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~ 215 (702)
+..+++.|++|||||+|+..++.... ...+.|- ...|+....+.+++.....
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~------~~iGer~~ev~~~~~~~~~ 121 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF------AGVGERTREGNDLYHEMIE 121 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE------EEESCCHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE------EEeccChHHHHHHHHHHHh
Confidence 34499999999999999999987631 1112211 1236666666666666544
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=83.86 E-value=0.26 Score=47.15 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHH---------------------------
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAV--------------------------- 511 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~--------------------------- 511 (702)
...++.-|+|+|||.++-+++..+ ...++.+....++..+..+.....
T Consensus 129 ~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 208 (282)
T d1rifa_ 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (282)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEE
T ss_pred CCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhccccccceeecceecccccccccceEE
Q ss_pred -----------HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 512 -----------RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 512 -----------~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
+..+... ++|++||+|.+. ...+..++..+....- .+|-|-.|.
T Consensus 209 i~t~qs~~~~~~~~~~~f-----~~VIvDEaH~~~-----------a~~~~~il~~~~~~~~-----rlGlTaT~~ 263 (282)
T d1rifa_ 209 VGTWQTVVKQPKEWFSQF-----GMMMNDECHLAT-----------GKSISSIISGLNNCMF-----KFGLSGSLR 263 (282)
T ss_dssp EECHHHHTTSCGGGGGGE-----EEEEEETGGGCC-----------HHHHHHHTTTCTTCCE-----EEEECSSCC
T ss_pred EEeeehhhhhcccccCCC-----CEEEEECCCCCC-----------chhHHHHHHhccCCCe-----EEEEEeecC
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.63 E-value=0.2 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.4
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+-|+|+||+|||+|..+|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998853
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.56 E-value=3.8 Score=36.38 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh--------------------------------------CCeEEEEeccccccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA--------------------------------------GANFIHIKGPELLNK 502 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~--------------------------------------~~~~~~i~~~~l~~~ 502 (702)
+|.-++.+.|.+++|||||+.+|...+ +..+..++.+-....
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+..++..+....-+||++|=.+-+.. ...-.-.+...-+... +|.+-|..+.++
T Consensus 81 --------~~~~~~~~~~aD~avlVvda~~Gv~~----------qt~~~~~~~~~~gi~~-----iiv~iNK~D~~~ 134 (204)
T d2c78a3 81 --------IKNMITGAAQMDGAILVVSAADGPMP----------QTREHILLARQVGVPY-----IVVFMNKVDMVD 134 (204)
T ss_dssp --------HHHHHHHHTTCSSEEEEEETTTCCCH----------HHHHHHHHHHHTTCCC-----EEEEEECGGGCC
T ss_pred --------HHHHHHHHHHCCEEEEEEECCCCCcH----------HHHHHHHHHHHcCCCe-----EEEEEEecccCC
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.53 E-value=0.26 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
-+++||+|+|||++..|++..+|.
T Consensus 28 ~~i~G~NGsGKS~ileAi~~~lg~ 51 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISFVLGV 51 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 379999999999999999877654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=83.42 E-value=0.27 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
-.+.+.|.+|+|||+|..++.+
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4578999999999999999875
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.40 E-value=0.33 Score=44.90 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=24.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
++++++++|+|+|||+++-..+-.. +..++.+.+.
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt 95 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT 95 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc
Confidence 5679999999999998765544332 4555555543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.39 E-value=0.26 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.5
Q ss_pred eEEEcCCCCChhHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVA 484 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la 484 (702)
++|.|.+|+|||++++.+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999883
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=83.36 E-value=0.48 Score=44.82 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=26.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
+-+++.|.=|+||||++-.||..+ |..+..+++.
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 447788999999999877776655 6777777665
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.13 E-value=0.28 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.4
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
-|+|.|..|+|||+|++.+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999988754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=83.07 E-value=0.21 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.7
Q ss_pred ceEEEcCCCCChhHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+.|+|.||+|||+|..+|.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=82.54 E-value=0.28 Score=43.24 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q 045279 160 GILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~ 180 (702)
+|-++|.|++|||||..+|.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 699999999999999999974
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.37 E-value=0.46 Score=44.80 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=26.7
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
-|.++|..||||||+|-.||..+ |..+..+++.
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D 38 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 35679999999999998888765 7778888764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.39 Score=42.21 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.4
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
-.+++.|++|+|||+|+..+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999998776
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.49 E-value=0.41 Score=45.27 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l 182 (702)
+||.+.|..|+|||||+.+|....
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHc
Confidence 679999999999999999996554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.41 E-value=0.37 Score=48.62 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=20.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHH
Q 045279 158 MAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~ 180 (702)
+-+|.++|.||+|||||..+|.+
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G 78 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRG 78 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999975
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.34 E-value=0.31 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~ 184 (702)
|.|-|+-|+||||+++.|++.++.
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999998864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.01 E-value=0.35 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~ 486 (702)
-++|.|++|+|||++++.+...
T Consensus 8 KilllG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999987643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.80 E-value=0.46 Score=45.09 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
-+||.|+|..|+|||||+.+|....+
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g 31 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTG 31 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999976543
|