Citrus Sinensis ID: 045319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MPKSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFSYCAAASSSSPNNK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHcccccccHHHHHHHHHHHHcccccccccccccHHHccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpksslnpvnvcdtATFQLEALTAGDAGEELLEMAIKALRSkrlhfqpgntgsilETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFsqgissscsfsycaaasssspnnk
Flexible Loop (DISEMBL)
mpksslnpvnvCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFSYcaaasssspnnk
Low Complexity Region (SEG)
MPKSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGIssscsfsycaaassssPNNK
Disordered region (IsUnstruct)
********VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFSYCA**********
Disordered Region (DISOPRED)
*****************************************************************VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGI********************
Disordered Region (DISEMBL)
********VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFS*************
Disordered Region (DISPRO)
****************************************SKR*HF****TGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGIS*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFSYCAAASSSSPNNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
224104869	221	predicted protein [Populus trichocarpa]	0.744	0.502	0.547	3e-28
224097578	214	predicted protein [Populus trichocarpa]	0.765	0.532	0.55	5e-28
224140047	195	predicted protein [Populus trichocarpa]	0.778	0.594	0.528	5e-28
351723889	239	uncharacterized protein LOC100527123 [Gl	0.644	0.401	0.595	8e-28
225440747	229	PREDICTED: uncharacterized protein LOC10	0.630	0.410	0.608	2e-27
147792347	231	hypothetical protein VITISV_021409 [Viti	0.630	0.406	0.608	2e-27
255551161	235	conserved hypothetical protein [Ricinus	0.738	0.468	0.543	2e-27
224113405	210	predicted protein [Populus trichocarpa]	0.791	0.561	0.516	3e-27
147783278	226	hypothetical protein VITISV_004927 [Viti	0.771	0.508	0.512	7e-26
225464408	226	PREDICTED: uncharacterized protein LOC10	0.771	0.508	0.512	7e-26

>gi|224104869|ref|XP_002313599.1| predicted protein [Populus trichocarpa] gi|222850007|gb|EEE87554.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 86/117 (73%), Gaps = 6/117 (5%)

Query: 21  ALTAGDAGEELLEMAI-KALRSKRLHFQPGNTGSIL-----ETAKFQFKDCVALAIDSED 74
           +LT  ++ E+ LE+A+ KA+RS+RL F+PGNT SIL     E +KF F +CVALA++SED
Sbjct: 64  SLTPKESKEDSLEIAVNKAVRSERLFFEPGNTSSILDDHNDEASKFPFPECVALAMESED 123

Query: 75  AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISS 131
            Y DFR SMEE VE  GLK WE +EELLA +LRMN++++H  I+ AF+D+FS    S
Sbjct: 124 PYEDFRSSMEETVETCGLKNWEDVEELLAWYLRMNRQQHHCFIIEAFVDLFSAAPPS 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097578|ref|XP_002310994.1| predicted protein [Populus trichocarpa] gi|222850814|gb|EEE88361.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 6/120 (5%)

Query: 9   VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDC 65
            N  +T +F  E+   G  GE L E+ ++ +RS+RL F+PG+T SILE AK   F FK+ 
Sbjct: 59  TNSSETTSFSTES--EGFDGESL-EVVVRGVRSERLFFEPGDTNSILEEAKTGGFPFKES 115

Query: 66  VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
           V LA++SED Y DFRRSMEEMVE++GLK W+ LEELL  +L++N KKNHG IVGAF+D+ 
Sbjct: 116 VVLAMESEDPYVDFRRSMEEMVESHGLKDWDCLEELLGWYLKVNGKKNHGYIVGAFVDLL 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140047|ref|XP_002323398.1| predicted protein [Populus trichocarpa] gi|222868028|gb|EEF05159.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 5/121 (4%)

Query: 9   VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAK----FQFKD 64
            N C++A+F   +     AGE + E  IK LRS+RL F+PG T SILE AK    F FK+
Sbjct: 70  TNSCESASFSTASDDQSGAGESI-ETVIKGLRSERLFFKPGETNSILEEAKAGGEFPFKE 128

Query: 65  CVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124
            V L++DS D Y DF++SMEEMVEA+GL  WE LEELL+ +L++N K NHG I+GAF+D+
Sbjct: 129 SVVLSMDSRDPYLDFKKSMEEMVEAHGLTDWEGLEELLSCYLKVNGKSNHGYIIGAFVDL 188

Query: 125 F 125
            
Sbjct: 189 L 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723889|ref|NP_001235247.1| uncharacterized protein LOC100527123 [Glycine max] gi|255631606|gb|ACU16170.1| unknown [Glycine max]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 3/99 (3%)

Query: 30  ELLEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDCVALAIDSEDAYSDFRRSMEEM 86
           E LEM ++ +RS+RL F+PG+T SILE AK   F FK+ V LA++SED Y DF+RSMEEM
Sbjct: 92  ESLEMLVRGVRSERLFFEPGDTSSILEKAKASGFPFKESVVLAMESEDPYEDFKRSMEEM 151

Query: 87  VEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
           VE++G++ WE LEELL  +LR+N K NHG IVGAF+D+ 
Sbjct: 152 VESHGVRDWEGLEELLTWYLRVNGKNNHGFIVGAFVDLL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440747|ref|XP_002275570.1| PREDICTED: uncharacterized protein LOC100251218 [Vitis vinifera]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%), Gaps = 3/97 (3%)

Query: 32  LEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDCVALAIDSEDAYSDFRRSMEEMVE 88
           +E  I+ LRS+RL F+PG T SILE AK   F FK+ V L+++SED Y DFRRSMEEM E
Sbjct: 80  IETVIRGLRSERLFFEPGETSSILEEAKGGGFPFKESVVLSMESEDPYVDFRRSMEEMAE 139

Query: 89  AYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
           A+GLK WE LEELL+ +LR+N+K+NHG I+GAF+D+ 
Sbjct: 140 AHGLKDWESLEELLSWYLRVNEKQNHGYIIGAFVDLL 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792347|emb|CAN61477.1| hypothetical protein VITISV_021409 [Vitis vinifera]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%), Gaps = 3/97 (3%)

Query: 32  LEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDCVALAIDSEDAYSDFRRSMEEMVE 88
           +E  I+ LRS+RL F+PG T SILE AK   F FK+ V L+++SED Y DFRRSMEEM E
Sbjct: 80  IETVIRGLRSERLFFEPGETSSILEEAKGGGFPFKESVVLSMESEDPYVDFRRSMEEMAE 139

Query: 89  AYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
           A+GLK WE LEELL+ +LR+N+K+NHG I+GAF+D+ 
Sbjct: 140 AHGLKDWESLEELLSWYLRVNEKQNHGYIIGAFVDLL 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551161|ref|XP_002516628.1| conserved hypothetical protein [Ricinus communis] gi|223544230|gb|EEF45752.1| conserved hypothetical protein [Ricinus communis]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 4/114 (3%)

Query: 26  DAGEELLEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDCVALAIDSEDAYSDFRRS 82
           D G + LE+ ++  RS+RL F+PG+T SILE AK   F F++ V LA++S+D Y DFRRS
Sbjct: 85  DFGGDSLEVVVRGARSERLFFEPGDTNSILEKAKPGGFPFQESVVLAMESDDPYVDFRRS 144

Query: 83  MEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFS 136
           ME+MVE++GLK W  LEELL  +L++N KKNHG I+GAFID+   GI ++ S+S
Sbjct: 145 MEDMVESHGLKDWGSLEELLVWYLKVNGKKNHGFIIGAFIDLLV-GIGAAASYS 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113405|ref|XP_002316486.1| predicted protein [Populus trichocarpa] gi|222865526|gb|EEF02657.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 87/124 (70%), Gaps = 6/124 (4%)

Query: 13  DTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAK---FQFKDCVALA 69
           +T +F  E+    D   E LE+ ++ +RS+RL F+PG+T SILE AK   F FK+ V L 
Sbjct: 63  ETTSFSTES---EDYDGESLEVVVRGVRSERLFFEPGDTNSILEEAKTGGFPFKESVELE 119

Query: 70  IDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGI 129
           ++SED Y DFRRSMEEMVE++GLK W+ LEELL  +L++N KKNHG IVGAF+D+     
Sbjct: 120 MESEDPYVDFRRSMEEMVESHGLKDWDCLEELLGWYLKVNGKKNHGYIVGAFVDLLCGIA 179

Query: 130 SSSC 133
           ++ C
Sbjct: 180 AAPC 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783278|emb|CAN62024.1| hypothetical protein VITISV_004927 [Vitis vinifera]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 87/123 (70%), Gaps = 8/123 (6%)

Query: 9   VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILE-TAK-----FQF 62
            N  ++A+F  E  +  + G + +E+ I+ ++S+RL F+PGNT SILE  AK       F
Sbjct: 62  TNTSESASFSTE--SEEEYGVKSVEVVIRGVQSERLFFEPGNTSSILEEKAKAANEIHPF 119

Query: 63  KDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFI 122
           K+ V LA++SED Y DFR+SMEEMVE++GLK W+ LEELL  +LR+N KKNHG IVGAF+
Sbjct: 120 KESVVLAMESEDPYVDFRKSMEEMVESHGLKDWDCLEELLGWYLRVNGKKNHGFIVGAFV 179

Query: 123 DIF 125
           D+ 
Sbjct: 180 DLL 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464408|ref|XP_002269135.1| PREDICTED: uncharacterized protein LOC100244711 [Vitis vinifera] gi|296084462|emb|CBI25021.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 87/123 (70%), Gaps = 8/123 (6%)

Query: 9   VNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILE-TAK-----FQF 62
            N  ++A+F  E  +  + G + +E+ I+ ++S+RL F+PGNT SILE  AK       F
Sbjct: 62  TNTSESASFSTE--SEEEYGVKSVEVVIRGVQSERLFFEPGNTSSILEEKAKAANEIHPF 119

Query: 63  KDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFI 122
           K+ V LA++SED Y DFR+SMEEMVE++GLK W+ LEELL  +LR+N KKNHG IVGAF+
Sbjct: 120 KESVVLAMESEDPYVDFRKSMEEMVESHGLKDWDCLEELLGWYLRVNGKKNHGFIVGAFV 179

Query: 123 DIF 125
           D+ 
Sbjct: 180 DLL 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2039290	261	OFP15 "ovate family protein 15	0.771	0.440	0.417	6e-16
TAIR|locus:2175453	260	OFP13 "ovate family protein 13	0.409	0.234	0.603	1.3e-15
TAIR|locus:2079969	282	OFP18 "ovate family protein 18	0.637	0.336	0.423	5.5e-12
TAIR|locus:2176297	196	OFP10 [Arabidopsis thaliana (t	0.577	0.438	0.329	2e-08
TAIR|locus:504955854	159	OFP6 "ovate family protein 6"	0.402	0.377	0.45	1.8e-07
TAIR|locus:2201011	226	OFP12 "ovate family protein 12	0.577	0.380	0.355	2.7e-07
TAIR|locus:2016344	294	OFP14 "ovate family protein 14	0.416	0.210	0.373	3.3e-07
TAIR|locus:4515102951	183	AT2G36026 "AT2G36026" [Arabido	0.402	0.327	0.433	4.8e-07
TAIR|locus:2130399	182	OFP11 "AT4G14860" [Arabidopsis	0.362	0.296	0.491	1.3e-06
TAIR|locus:2046308	315	OFP7 "ovate family protein 7"	0.402	0.190	0.433	3.8e-06

TAIR|locus:2039290 OFP15 "ovate family protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 53/127 (41%), Positives = 80/127 (62%)

Query:     7 NPVNVCDTATFQLEALTAGDAGEELLEMAIKALRS-KRLHFQP-GNTGSILE--TAKFQF 62
             NP++  D    +L+ L   +  + + E  IK LRS +RL F+  G T SILE  T+K + 
Sbjct:    46 NPIH--DQDDDELDLLDPPEITDSV-ENVIKGLRSSERLIFESKGETNSILEEATSKREE 102

Query:    63 KD----CVALAIDSEDAYSDFRRSMEEMVEAYGLKY-WEHLEELLALFLRMNKKKNHGII 117
             +D     +  +++S+D YSDF+RSMEEMVEA+ L + W+ LE+LL  FL++N K +H  I
Sbjct:   103 EDEEEGFMLFSLESDDPYSDFKRSMEEMVEAHALHHDWKSLEKLLLQFLKVNAKTSHRYI 162

Query:   118 VGAFIDI 124
               AF+D+
Sbjct:   163 FAAFVDL 169

GO:0009507 "chloroplast" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2175453 OFP13 "ovate family protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/63 (60%), Positives = 50/63 (79%)

Query:    66 VALAIDSEDAYSDFRRSMEEMVEAYG--LKYWEHLEELLALFLRMNKKKNHGIIVGAFID 123
             VA+A++SED Y DFRRSMEEMV ++G   K WE LE +LA +LRMN +K+HG+IV AF+D
Sbjct:   148 VAVAMESEDPYGDFRRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVD 207

Query:   124 IFS 126
             + S
Sbjct:   208 LLS 210

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2079969 OFP18 "ovate family protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 44/104 (42%), Positives = 65/104 (62%)

Query:    30 ELLEMAIKALRS-KRLHFQP-GNTGSILETAKF-----QFKD-CVALAIDSEDAYSDFRR 81
             E +E  IK L+S KRL F+  G + SILE A       + +D  + L+++S D Y+DF+ 
Sbjct:    93 ESIENVIKGLKSSKRLIFERRGTSNSILEEATKRDDHEEEEDGLMLLSLESNDPYTDFKN 152

Query:    82 SMEEMVEAYGLKY-WEHLEELLALFLRMNKKKNHGIIVGAFIDI 124
             SME+MVE + L + W  LE+LL  FL++N K +H  I  AF+D+
Sbjct:   153 SMEKMVEVHVLHHDWISLEKLLFWFLKVNVKASHRYIFAAFVDL 196

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2176297 OFP10 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query:    41 SKRLHFQPGNTGS--ILETAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHL 98
             S   H+ PG   S  +L +   +  + VA+A +S + + D+++SM +M+E   ++    L
Sbjct:    71 SSHSHYTPGPPVSPTVLRSPCPKIDESVAMAKESINPFEDYKKSMNQMIEERYIETESEL 130

Query:    99 EELLALFLRMNKKKNHGIIVGAFIDIFS 126
             +ELL  FL +N    H +IV AF+D+ S
Sbjct:   131 KELLRCFLDINPSPQHNLIVRAFVDVCS 158

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:504955854 OFP6 "ovate family protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query:    66 VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
             VA+  DS+D Y DFR+SM +M+    +   + L ELL  FL +N   +HGIIV AF +I+
Sbjct:    68 VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIW 127

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2201011 OFP12 "ovate family protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 37/104 (35%), Positives = 53/104 (50%)

Query:    39 LRSKRLHFQ-PGNTGSILETAKFQFKD-------------CVALAIDSEDAYSDFRRSME 84
             L S+R  F  PG + SI ++   + +D              V   + S D Y+DFRRSM+
Sbjct:   111 LASRRFFFSSPGCSNSITDSPDLRCRDNYDTATRLLTGGTAVKHYVQSPDPYNDFRRSMQ 170

Query:    85 EMVEAY---G-LKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124
             EM++A    G L+ +E L ELL  +L +N    H  I+ AF DI
Sbjct:   171 EMIDAVTNAGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADI 214

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2016344 OFP14 "ovate family protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 25/67 (37%), Positives = 45/67 (67%)

Query:    63 KDCVALAIDSEDAYSDFRRSMEEMVEA-YGLKY----WEHLEELLALFLRMNKKKNHGII 117
             ++C+A+   +++   DFR+SM EM+E+  G++     W+ +EELL  +L +N KK+H  I
Sbjct:   190 ENCIAVLRYTDEPQEDFRQSMVEMMESKLGMRESEVDWDLMEELLFCYLDLNDKKSHKFI 249

Query:   118 VGAFIDI 124
             + AF+D+
Sbjct:   250 LSAFVDL 256

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:4515102951 AT2G36026 "AT2G36026" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query:    66 VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
             VA+  DS+D Y DFR+SM +M+    +     L ELL  FL +N+  +HGII+ AF +I+
Sbjct:    88 VAVEKDSDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIW 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130399 OFP11 "AT4G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/59 (49%), Positives = 33/59 (55%)

Query:    70 IDSEDAYSDFRRSMEEMVEAYGLKY-----WEHLEELLALFLRMNKKKNHGIIVGAFID 123
             I+S D Y DF RSM EMVEA  L        E+L ELL  +L +N K  H  IV AF D
Sbjct:   107 IESPDPYRDFGRSMREMVEARDLTRDVVADREYLHELLFCYLYLNPKHTHRFIVSAFAD 165

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2046308 OFP7 "ovate family protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query:    66 VALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125
             VA+   SED Y DF+ SM EM+    +     LE+LL+ FL +N K++H  IV AF +I+
Sbjct:   228 VAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIW 287

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000142 hypothetical protein (214 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam04844	60	pfam04844, Ovate, Transcriptional repressor, ovate	2e-21
TIGR01568	66	TIGR01568, A_thal_3678, uncharacterized plant-spec	7e-21

>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate

 Score = 81.1 bits (201), Expect = 2e-21
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 72  SEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124
           S D Y DFRRSM EM+   G++ W+ LEELLA +L +N K++H  IV AF D+
Sbjct: 1   SSDPYEDFRRSMVEMIVENGIRDWDDLEELLACYLSLNAKEHHRAIVAAFADV 53

This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development. Length = 60

>gnl|CDD|130631 TIGR01568, A_thal_3678, uncharacterized plant-specific domain TIGR01568

 Score = 80.1 bits (198), Expect = 7e-21
 Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 66  VALAIDSEDAYSDFRRSMEEMVEAYGL-KYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124
           VA+A +S+D Y DFRRSMEEM+E   L   W+ LEELLA +L +N KK+H  IV AF+DI
Sbjct: 1   VAVAKESDDPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDI 60

Query: 125 FSQ 127
            S 
Sbjct: 61  LSA 63

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
TIGR01568	66	A_thal_3678 uncharacterized plant-specific domain	100.0
PF04844	59	Ovate: Transcriptional repressor, ovate; InterPro:	100.0
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	82.69

>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568

Probab=100.00  E-value=7.3e-37  Score=213.27  Aligned_cols=65  Identities=57%  Similarity=0.865  Sum_probs=62.6

Q ss_pred             EEEEeeCcchHHHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHhhhcC
Q 045319           66 VALAIDSEDAYSDFRRSMEEMVEAYGL-KYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGIS  130 (149)
Q Consensus        66 vAVvk~S~DPy~DFR~SM~EMI~e~gi-~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~l~s  130 (149)
                      |||+|+|.|||.|||+||+|||+++|+ .+|++|||||+|||+||+++||++|++||+|||.+|++
T Consensus         1 vAv~k~S~DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~   66 (66)
T TIGR01568         1 VAVAKESDDPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS   66 (66)
T ss_pred             CeeeeCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence            699999999999999999999999999 57999999999999999999999999999999999874

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.

>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length

Probab=100.00  E-value=8.7e-35  Score=198.84  Aligned_cols=59  Identities=47%  Similarity=0.847  Sum_probs=57.5

Q ss_pred             CcchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHhhhcC
Q 045319           72 SEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGIS  130 (149)
Q Consensus        72 S~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~l~s  130 (149)
                      |.|||+|||+||+|||+++|+++|++|||||+|||+||+++||++|++||+|||.++++
T Consensus         1 S~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s   59 (59)
T PF04844_consen    1 SSDPYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS   59 (59)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999999999999874

At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=82.69  E-value=2.5  Score=29.97  Aligned_cols=47  Identities=13%  Similarity=0.223  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHhh
Q 045319           79 FRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQ  127 (149)
Q Consensus        79 FR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~  127 (149)
                      ||+.+...|.+.-  ...+.+|...|...||.+++|+.++...+..+.+
T Consensus         1 ~~k~i~~~l~ey~--~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le   47 (113)
T smart00544        1 LKKKIFLIIEEYL--SSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALE   47 (113)
T ss_pred             ChhHHHHHHHHHH--HcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            5677777776531  1247788889999999887887777766665543

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2rg8_A	165	Programmed cell death protein 4; MA3 domain, heat	81.74
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	80.53
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	80.07

>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A

Probab=81.74  E-value=3.1  Score=31.63  Aligned_cols=47  Identities=9%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319           75 AYSDFRRSMEEMVEAY-GLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI  124 (149)
Q Consensus        75 Py~DFR~SM~EMI~e~-gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl  124 (149)
                      +..+|++.+..+|.|. ..   .+++|.+.|.-.||.+.+|..+++-.+..
T Consensus         5 s~ee~~kk~~~ii~EYf~~---~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~   52 (165)
T 2rg8_A            5 DERAFEKTLTPIIQEYFEH---GDTNEVAEMLRDLNLGEMKSGVPVLAVSL   52 (165)
T ss_dssp             SHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHTCSGGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            4679999999999985 22   37889999999999999999988877654

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=80.53  E-value=1.7  Score=31.62  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319           75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI  124 (149)
Q Consensus        75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl  124 (149)
                      |-.+|++.|..+|.|.=  .-.+++|-..|.-.||.+.+|+.+|+-.+..
T Consensus         2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~   49 (129)
T 2nsz_A            2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM   49 (129)
T ss_dssp             CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            66789999999999852  1247899999999999888888766654443

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=80.07  E-value=1.7  Score=32.64  Aligned_cols=50  Identities=12%  Similarity=0.149  Sum_probs=38.9

Q ss_pred             chHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 045319           74 DAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF  125 (149)
Q Consensus        74 DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~  125 (149)
                      .|-.+|++.|..+|.|.=-  -.+++|-..|.-.||.+.+|+.+|+-.+...
T Consensus         3 ~~~eel~kki~~lL~EY~~--~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~a   52 (152)
T 2ion_A            3 QPVNHLVKEIDMLLKEYLL--SGDISEAEHCLKELEVPHFHHELVYEAIVMV   52 (152)
T ss_dssp             CCCCHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            5778999999999998521  2478999999999998888877776554443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00