Citrus Sinensis ID: 045355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900
MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHMLTNPENGSASQAGVSADTIASNGKLEAFKNLAIST
cccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHEcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHcHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHccccccccccccHcccccccccccccccccccccccccccEEEHcccEEcc
mgaslpskdANLFKLIVKSYETKQYKKGLKAADAILKKFpehgetlsmkgltlncmdRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNalridpdniEILRDLSLLQAQMRDLTGFVETRQQLltlkpnhrmnWIGFAVSHHLNSNGSKAVEILEAYegtleddyppdnercehgEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLsmnpdnysyyEGLQKCLGLyrdngnyssgeIDELDALYKSLAQQYTwssavkripldflqgeKFREAAFNYVrplltkgvpslfsdlsplydqpgkaDILEQLILELEHSigttgkypgreekeppstLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALftkdgdqhnnlhDMQCMWYELasgesyfrQGDLGRALKKFLAVEKHYaditedqfDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKlfdspprstteedddkadlppsqkKKLKQKQRKAEARAKKEaegkneessasgvsksgkrhvkpvdpdphgekllqvedPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRlnaedpeshrcLIRFFhkvdlmtapatdtEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDstnnlaptngalgsvrewKLRDSIAVHKLLETVLADQDAALRWKTrcaeyfpystyfegkhsgmyNTAYKHmltnpengsasqagvsadtiasngkleafkNLAIST
mgaslpskdanLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGvkndikshvcWHVYGLLYRSDREYREAIKCYrnalridpdnIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEgtleddyppdNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIgttgkypgreekEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSpprstteedddkadlppsqkkklkqKQRKAEARakkeaegkneessasgvsksgkrhvkpvdpdphgekllqVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRlnaedpesHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIedstnnlaptngaLGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHMLTNPENGSASQAGVSADTiasngkleafknlaist
MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGrleeaaelyrallSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHagdlaaaatladeaRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPsqkkklkqkqrkaearakkeaegkneessasGVSKSGKRHVKPVDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHMLTNPENGSASQAGVSADTIASNGKLEAFKNLAIST
**********NLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDY****ERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTT*************TLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLF************************************************************************************************LETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKK*EAVQLIE****NLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHM***********************************
*G*SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDK*DLPP*******************************************VDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTA**TDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLET****EAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFE*************************************KLEAFKNLAIS*
MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSP***********************************************************VDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHMLTNPENGSASQAGVSADTIASNGKLEAFKNLAIST
***SLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSP***********************************************************VDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGK**********************************GKLEAFKNLAIS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLxxxxxxxxxxxxxxxxxxxxxSSASGVSKSGKRHVKPVDPDPHGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLETNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRCAEYFPYSTYFEGKHSGMYNTAYKHMLTNPENGSASQAGVSADTIASNGKLEAFKNLAIST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query900 2.2.26 [Sep-21-2011]
Q9DBB4864 N-alpha-acetyltransferase yes no 0.854 0.890 0.431 0.0
Q6N069864 N-alpha-acetyltransferase yes no 0.854 0.890 0.430 0.0
Q5R4J9866 N-alpha-acetyltransferase yes no 0.914 0.950 0.416 0.0
Q80UM3865 N-alpha-acetyltransferase no no 0.914 0.951 0.415 0.0
Q9BXJ9866 N-alpha-acetyltransferase no no 0.914 0.950 0.416 0.0
O74985729 N-terminal acetyltransfer yes no 0.74 0.913 0.373 1e-124
P12945854 N-terminal acetyltransfer yes no 0.736 0.776 0.308 6e-89
Q9Y7X2695 N-terminal acetyltransfer no no 0.68 0.880 0.246 3e-44
Q9FMA3728 Peroxisome biogenesis pro no no 0.082 0.101 0.310 0.0004
>sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Mus musculus GN=Naa16 PE=2 SV=1 Back     alignment and function desciption
 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/797 (43%), Positives = 508/797 (63%), Gaps = 28/797 (3%)

Query: 3   ASLPSKDANLFKLIVKSYETKQYKKGLKAADAILK--KFPEHGETLSMKGLTLNCMDRKS 60
             LP+K++ LFK ++K YE KQYK GLK    IL   KF EHGETL+MKGL LNC+ ++ 
Sbjct: 4   VQLPAKESALFKRVLKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLILNCLGKRE 63

Query: 61  EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120
           EAYE VR G+++D++SHVCWHVYGLL RSD++Y EAIKCYRNAL++D DN++ILRDLSLL
Sbjct: 64  EAYEFVRKGLRSDVRSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLL 123

Query: 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYP 180
           Q QMRDL G+ ETR QLL L+P  R +WIG+A+++HL  +   A+++LE +  T     P
Sbjct: 124 QIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDTALKLLEEFRQT--QQVP 181

Query: 181 PDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLE 240
           P+    E+ E+LLY+  ++ E   F+ +L  +   E  I DKL  +E +  +L+K+GRL+
Sbjct: 182 PNKIAYEYSELLLYQNQVMREANLFQESLEHIETYEKLICDKLLVEEIKGEMLLKLGRLK 241

Query: 241 EAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSA 300
           EA+E++R L+  N +N+ YYEGL+K L L           +DE   LY+ +++Q+  + +
Sbjct: 242 EASEVFRNLIDWNAENWCYYEGLEKALQL---------RSLDERLQLYEEVSKQHPRAVS 292

Query: 301 VKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHS 360
            +R+PL F  G+KFRE    ++RP  +KG P LF+ L  LY    K  I+++L+   E S
Sbjct: 293 PRRLPLSFAPGKKFRELMDKFLRPNFSKGCPPLFTTLKSLYCDTEKVSIIQELVTNYEAS 352

Query: 361 IGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYS 418
           +   G +   E  EKEPP+TL+W  +FLAQHYD+ GQY +AL  I+  I  TPT+I+L+ 
Sbjct: 353 LKMNGYFSPYENGEKEPPTTLIWVQYFLAQHYDKLGQYFLALEYINAVIASTPTLIELFY 412

Query: 419 VKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG 478
           +K++I KH G+L  AA   DEA+ +D ADR++NS+C K ML+A+ +  AE+  + FT++G
Sbjct: 413 MKAKIYKHMGNLKEAAQWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSRFTREG 472

Query: 479 DQ-HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRK 537
                NL++MQCMW+E     +Y R G  G ALKK   VE+H+ +IT+DQFDFH+YC+RK
Sbjct: 473 TSAMENLNEMQCMWFETECISAYQRLGRYGDALKKCHEVERHFLEITDDQFDFHTYCMRK 532

Query: 538 MTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSP-PRSTTEEDDDKADLPPSQK 596
           MTLRAYV +L+ +D L  H ++ KAA  AI  Y+KL D+P    + ++D D  +L   + 
Sbjct: 533 MTLRAYVGLLRLEDALRRHTFYFKAARSAIEIYLKLHDNPLTNDSKQQDIDSENLSAKEM 592

Query: 597 KKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHGEKLL-----QVED 651
           KK+  KQR+A+ +AK E E K+ E      ++  KR  +      H E+L+     +V++
Sbjct: 593 KKMLSKQRRAQKKAKVEEERKHTERERQQKNQKKKREEEEEVTSGHKEELIPEKLERVDN 652

Query: 652 PLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCL 711
           PL EA K+L  L+  + +S++THLL+FE+  RK K LL LQ+VK    + + +P  H CL
Sbjct: 653 PLEEAIKFLTPLKTLAAESIDTHLLAFEIYFRKGKFLLMLQSVKRAFAIESNNPWLHECL 712

Query: 712 IRFFHKVDLMTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAA 771
           I+F   V    +  ++   ++  VL  E   I     K L   N+ FL  +  SL H  A
Sbjct: 713 IKFSKSV----SNHSNLPDIVSKVLAQEMKKI--FVNKDLHSFNEDFLRHNATSLQHLLA 766

Query: 772 AAEMLFVLETNKKSEAV 788
            A+M++ L+ +++ +A+
Sbjct: 767 GAKMMYFLDKSRQEKAI 783
May belong to a complex displaying N-terminal acetyltransferase activity.
Mus musculus (taxid: 10090)
>sp|Q6N069|NAA16_HUMAN N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Homo sapiens GN=NAA16 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4J9|NAA15_PONAB N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Pongo abelii GN=NAA15 PE=2 SV=1 Back     alignment and function description
>sp|Q80UM3|NAA15_MOUSE N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Mus musculus GN=Naa15 PE=1 SV=1 Back     alignment and function description
>sp|Q9BXJ9|NAA15_HUMAN N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1 Back     alignment and function description
>sp|O74985|NAT1_SCHPO N-terminal acetyltransferase A complex subunit nat1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nat1 PE=3 SV=1 Back     alignment and function description
>sp|P12945|NAT1_YEAST N-terminal acetyltransferase A complex subunit NAT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAT1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y7X2|YOP2_SCHPO N-terminal acetyltransferase A complex subunit-like protein C418.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC418.02 PE=3 SV=1 Back     alignment and function description
>sp|Q9FMA3|PEX5_ARATH Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query900
255552957901 NMDA receptor-regulated protein, putativ 0.997 0.996 0.849 0.0
225442715900 PREDICTED: N-alpha-acetyltransferase 15, 0.997 0.997 0.84 0.0
356519431901 PREDICTED: N-alpha-acetyltransferase 16, 0.997 0.996 0.839 0.0
356526163901 PREDICTED: N-alpha-acetyltransferase 16, 0.997 0.996 0.841 0.0
449436084896 PREDICTED: N-alpha-acetyltransferase 15, 0.994 0.998 0.799 0.0
356555932901 PREDICTED: N-alpha-acetyltransferase 15, 0.997 0.996 0.812 0.0
356550567900 PREDICTED: N-alpha-acetyltransferase 16, 0.997 0.997 0.803 0.0
357455033952 NMDA receptor-regulated protein [Medicag 0.997 0.943 0.764 0.0
22330770897 tetratricopeptide repeat-containing prot 0.995 0.998 0.771 0.0
297839899897 EMB2753 [Arabidopsis lyrata subsp. lyrat 0.995 0.998 0.778 0.0
>gi|255552957|ref|XP_002517521.1| NMDA receptor-regulated protein, putative [Ricinus communis] gi|223543153|gb|EEF44685.1| NMDA receptor-regulated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/901 (84%), Positives = 822/901 (91%), Gaps = 3/901 (0%)

Query: 1   MGASLPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKS 60
           MGASLP K+ANLFKLIVKSYETKQYKKGLKAAD ILKKFP+HGETLSMKGLTLNCMDRKS
Sbjct: 1   MGASLPPKEANLFKLIVKSYETKQYKKGLKAADTILKKFPDHGETLSMKGLTLNCMDRKS 60

Query: 61  EAYELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLL 120
           EAYELVRLG+KND+KSHVCWHVYGLLYRSDREY+EAIKCYRNAL+IDPDNIEILRDLSLL
Sbjct: 61  EAYELVRLGLKNDLKSHVCWHVYGLLYRSDREYKEAIKCYRNALKIDPDNIEILRDLSLL 120

Query: 121 QAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYP 180
           QAQ+RDL GFVETRQQLLTLKPNHRMNWIGFAV+HHLNSN SKAV+ILEAYEGTLEDDYP
Sbjct: 121 QAQIRDLAGFVETRQQLLTLKPNHRMNWIGFAVAHHLNSNASKAVDILEAYEGTLEDDYP 180

Query: 181 PDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLE 240
           PDNERCEHGEMLLYKISLLEECGS ERAL E+HKK  KIVDKLA +EQEVSLLVK+ RLE
Sbjct: 181 PDNERCEHGEMLLYKISLLEECGSLERALEELHKKGLKIVDKLACEEQEVSLLVKLARLE 240

Query: 241 EAAELYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSA 300
           E AELYR LL+MNPDNY YYEGLQKC+GL  +NG YS+ EID+LD+LYK L QQYTWSSA
Sbjct: 241 EGAELYRVLLAMNPDNYRYYEGLQKCVGLDSENGQYSADEIDKLDSLYKLLGQQYTWSSA 300

Query: 301 VKRIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHS 360
           VKRIPLDFLQG+KFREAA NYVRPLLTKGVPSLFSDLSPLYD  GKA+ILE LILELEHS
Sbjct: 301 VKRIPLDFLQGDKFREAADNYVRPLLTKGVPSLFSDLSPLYDHAGKANILENLILELEHS 360

Query: 361 IGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVK 420
           I TTG+YPGR EKEPPSTL+WTLFFLAQHYDRRGQYD+AL+KIDEAIEHTPTVIDLYSVK
Sbjct: 361 IRTTGRYPGRAEKEPPSTLMWTLFFLAQHYDRRGQYDIALTKIDEAIEHTPTVIDLYSVK 420

Query: 421 SRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQ 480
           SRILKHAGDLAAAA LADEARCMDLADRY+NSECVKRMLQADQV++AEKTA LFTKDGDQ
Sbjct: 421 SRILKHAGDLAAAAALADEARCMDLADRYINSECVKRMLQADQVAVAEKTAVLFTKDGDQ 480

Query: 481 HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTL 540
           HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTL
Sbjct: 481 HNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTL 540

Query: 541 RAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLK 600
           RAYV MLKFQDRLHSHAYFHKAAAGAIRCYIKL+DSP +S TEEDD+ + L PSQKKK++
Sbjct: 541 RAYVAMLKFQDRLHSHAYFHKAAAGAIRCYIKLYDSPSKSRTEEDDEMSKLLPSQKKKMR 600

Query: 601 QKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDPHGEKLLQVEDPLSEATKYL 660
           QKQ+KAEARAK+EAE KNEESSASG SK GKRHVKPVDPDP+GEKLLQVEDPL EATKYL
Sbjct: 601 QKQKKAEARAKREAEVKNEESSASGASKLGKRHVKPVDPDPNGEKLLQVEDPLLEATKYL 660

Query: 661 KLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCLIRFFHKVDL 720
           KLLQKNSPDSLETHLLSFEVN+RKQKILLALQAVK LLRL+AE P+SH CL+RFFHKV L
Sbjct: 661 KLLQKNSPDSLETHLLSFEVNMRKQKILLALQAVKQLLRLDAESPDSHCCLLRFFHKVGL 720

Query: 721 MTAPATDTEKLIWSVLEAERPAISQLQEKSLIEANKFFLHKHEDSLMHRAAAAEMLFVLE 780
           + AP TD EKLIWSVLEAERP+ISQL E+SL EANK FL KH+DSLMHRAA AEML++LE
Sbjct: 721 LPAPVTDNEKLIWSVLEAERPSISQLHERSLTEANKCFLEKHKDSLMHRAAVAEMLYLLE 780

Query: 781 TNKKSEAVQLIEDSTNNLAPTNGALGSVREWKLRDSIAVHKLLETVLADQDAALRWKTRC 840
            NKKSEA++LIEDSTNNL P NGALG V+EWKL+D I VHK L T L + DAA RWK RC
Sbjct: 781 PNKKSEAIKLIEDSTNNLVPGNGALGPVKEWKLKDCITVHKRLGTALFNHDAASRWKARC 840

Query: 841 AEYFPYSTYFEG-KHSGMYNTAYKHMLTNPENGSASQAGVS--ADTIASNGKLEAFKNLA 897
           AEYFPYSTYFEG   S M N+ Y  +  N ENGSAS  G +  +D+IASNGKLEAFK+L 
Sbjct: 841 AEYFPYSTYFEGHSSSAMPNSVYNQIGKNIENGSASHPGDNKISDSIASNGKLEAFKDLT 900

Query: 898 I 898
           I
Sbjct: 901 I 901

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442715|ref|XP_002284882.1| PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit [Vitis vinifera] gi|297743321|emb|CBI36188.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356519431|ref|XP_003528376.1| PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|356526163|ref|XP_003531689.1| PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|449436084|ref|XP_004135824.1| PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356555932|ref|XP_003546283.1| PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|356550567|ref|XP_003543657.1| PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit [Glycine max] Back     alignment and taxonomy information
>gi|357455033|ref|XP_003597797.1| NMDA receptor-regulated protein [Medicago truncatula] gi|355486845|gb|AES68048.1| NMDA receptor-regulated protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|22330770|ref|NP_178157.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|17381118|gb|AAL36371.1| putative N-terminal acetyltransferase [Arabidopsis thaliana] gi|20259245|gb|AAM14358.1| putative N-terminal acetyltransferase [Arabidopsis thaliana] gi|26451312|dbj|BAC42757.1| putative N-terminal acetyltransferase [Arabidopsis thaliana] gi|332198278|gb|AEE36399.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297839899|ref|XP_002887831.1| EMB2753 [Arabidopsis lyrata subsp. lyrata] gi|297333672|gb|EFH64090.1| EMB2753 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query900
UNIPROTKB|Q6N069864 NAA16 "N-alpha-acetyltransfera 0.634 0.660 0.446 2.6e-158
UNIPROTKB|Q9BXJ9866 NAA15 "N-alpha-acetyltransfera 0.91 0.945 0.390 2.1e-155
UNIPROTKB|F1N4V5866 NAA15 "Uncharacterized protein 0.91 0.945 0.390 3.5e-155
MGI|MGI:1922088865 Naa15 "N(alpha)-acetyltransfer 0.91 0.946 0.389 9.2e-155
MGI|MGI:1914147864 Naa16 "N(alpha)-acetyltransfer 0.852 0.887 0.4 9.2e-155
RGD|1310984865 Naa15 "N(alpha)-acetyltransfer 0.91 0.946 0.387 4e-154
UNIPROTKB|F1RRD3868 NAA15 "Uncharacterized protein 0.91 0.943 0.387 1.7e-153
UNIPROTKB|F1NVR6852 NAA15 "Uncharacterized protein 0.894 0.944 0.384 3.4e-148
FB|FBgn0031020890 Nat1 "Nat1" [Drosophila melano 0.906 0.916 0.384 1.2e-147
ASPGD|ASPL0000013634833 AN3628 [Emericella nidulans (t 0.914 0.987 0.358 3.1e-131
UNIPROTKB|Q6N069 NAA16 "N-alpha-acetyltransferase 16, NatA auxiliary subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 1338 (476.1 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 262/587 (44%), Positives = 382/587 (65%)

Query:     5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILK--KFPEHGETLSMKGLTLNCMDRKSEA 62
             LP K++NLFK I+K YE KQYK GLK    IL   KF EHGETL+MKGLTLNC+ +K EA
Sbjct:     6 LPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEA 65

Query:    63 YELVRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQA 122
             YE VR G++ND+KSHVCWHVYGLL RSD++Y EAIKCYRNAL++D DN++ILRDLSLLQ 
Sbjct:    66 YEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQI 125

Query:   123 QMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPD 182
             QMRDL G+ ETR QLL L+P  R +WIG+A+++HL  +   A+++LE +  T +   PP+
Sbjct:   126 QMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQ--VPPN 183

Query:   183 NERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGXXXXX 242
                 E+ E++LY+  ++ E    + +L  +   E +I DKL  +E +  +L+K+G     
Sbjct:   184 KIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEA 243

Query:   243 XXXXXXXXSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVK 302
                       N +N+ YYEGL+K L +           ++E   +Y+ +++Q+  +   +
Sbjct:   244 SEVFKNLIDRNAENWCYYEGLEKALQI---------STLEERLQIYEEISKQHPKAITPR 294

Query:   303 RIPLDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIG 362
             R+PL  + GE+FRE    ++R   +KG P LF+ L  LY    K  I+++L+   E S+ 
Sbjct:   295 RLPLTLVPGERFRELMDKFLRVNFSKGCPPLFTTLKSLYYNTEKVSIIQELVTNYEASLK 354

Query:   363 TTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVK 420
             T   +   E  EKEPP+TLLW  +FLAQH+D+ GQY +AL  I+ AI  TPT+I+L+ +K
Sbjct:   355 TCDFFSPYENGEKEPPTTLLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMK 414

Query:   421 SRILKHXXXXXXXXXXXXXXRCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDGDQ 480
             ++I KH              + +D ADR++NS+C K ML+A+ +  AE+  + FT++G  
Sbjct:   415 AKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSKFTREGTS 474

Query:   481 H-NNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMT 539
                NL++MQCMW++     +Y R G  G ALKK   VE+H+ +IT+DQFDFH+YC+RKMT
Sbjct:   475 AMENLNEMQCMWFQTECISAYQRLGRYGDALKKCHEVERHFFEITDDQFDFHTYCMRKMT 534

Query:   540 LRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDD 586
             LRAYV++L+ +D L  HA++ KAA  AI  Y+KL+D+P  + +++ +
Sbjct:   535 LRAYVDLLRLEDILRRHAFYFKAARSAIEIYLKLYDNPLTNESKQQE 581
GO:0005634 "nucleus" evidence=ISS
GO:0005667 "transcription factor complex" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS;IDA
GO:0006474 "N-terminal protein amino acid acetylation" evidence=ISS
GO:0016407 "acetyltransferase activity" evidence=ISS
GO:0043022 "ribosome binding" evidence=ISS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|Q9BXJ9 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4V5 NAA15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1922088 Naa15 "N(alpha)-acetyltransferase 15, NatA auxiliary subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1914147 Naa16 "N(alpha)-acetyltransferase 16, NatA auxiliary subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310984 Naa15 "N(alpha)-acetyltransferase 15, NatA auxiliary subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RRD3 NAA15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVR6 NAA15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0031020 Nat1 "Nat1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013634 AN3628 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DBB4NAA16_MOUSENo assigned EC number0.43160.85440.8900yesno
Q6N069NAA16_HUMANNo assigned EC number0.43030.85440.8900yesno
Q5R4J9NAA15_PONABNo assigned EC number0.41640.91440.9503yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query900
pfam12569516 pfam12569, NARP1, NMDA receptor-regulated protein 0.0
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 3e-08
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 3e-05
pfam1341469 pfam13414, TPR_11, TPR repeat 1e-04
pfam0051534 pfam00515, TPR_1, Tetratricopeptide repeat 6e-04
pfam1343265 pfam13432, TPR_16, Tetratricopeptide repeat 0.003
smart0002834 smart00028, TPR, Tetratricopeptide repeats 0.003
pfam0771934 pfam07719, TPR_2, Tetratricopeptide repeat 0.004
COG4783484 COG4783, COG4783, Putative Zn-dependent protease, 0.004
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 Back     alignment and domain information 
 Score =  762 bits (1969), Expect = 0.0
 Identities = 292/521 (56%), Positives = 372/521 (71%), Gaps = 14/521 (2%)

Query: 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245
            EH E+LLYK SL+EE G  E AL  + +KE +IVD+LA  E    LL+K+GR EEA   
Sbjct: 1   YEHSELLLYKNSLIEESGDLEEALEHLEEKEKQIVDRLAVMEMRADLLLKLGRKEEAEAT 60

Query: 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIP 305
           YRALL  NP+NY YYEGLQK LGL       SSG+I+ L ALY  LA++Y  S A +R+P
Sbjct: 61  YRALLDRNPENYDYYEGLQKALGLE-----ISSGDIEALLALYDELAEKYPRSDAPRRLP 115

Query: 306 LDFLQGEKFREAAFNYVRPLLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTG 365
           LDFL+G++F+E A  Y+R +L KGVPSLF+DL  LY    K DILE+L+     S+ ++G
Sbjct: 116 LDFLEGDEFKELADAYLRRMLRKGVPSLFADLKSLYSDSEKVDILEELVEGYVSSLKSSG 175

Query: 366 KYPGRE---EKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPTVIDLYSVKSR 422
            + G +   EKEPPSTLLWTL+FLAQHYD  G  D AL  ID+AIEHTPT+++LY  K+R
Sbjct: 176 SFSGSDSNSEKEPPSTLLWTLYFLAQHYDYLGSRDKALEYIDKAIEHTPTLVELYMTKAR 235

Query: 423 ILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQH 481
           ILKHAGDL  AA   +EAR +DLADRY+NS+C K ML+A++   AEKTA+LFT+DG    
Sbjct: 236 ILKHAGDLQKAAEAMEEARSLDLADRYINSKCAKYMLRANENEEAEKTASLFTRDGTGPL 295

Query: 482 NNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLR 541
            +L+DMQCMW+    GE+Y RQG  G ALK+F AVEKH+ +I EDQFDFHSYCLRKMTLR
Sbjct: 296 ADLNDMQCMWFLTEDGEAYQRQGKYGLALKRFHAVEKHFDEIQEDQFDFHSYCLRKMTLR 355

Query: 542 AYVEMLKFQDRLHSHAYFHKAAAGAIRCYIKLFDSPPRSTTEEDD-DKADLPPSQKKKLK 600
           AYV+ML+++DRL SH ++ KAA GAI  Y+KL D P  +  EE++ +  +L P+++KKL+
Sbjct: 356 AYVDMLRWEDRLRSHPFYFKAALGAIEIYLKLHDKPLLAEGEEEEGENGNLSPAERKKLR 415

Query: 601 QKQRKAEARAKKEAEGKNE-ESSASGVSKSGKR---HVKPVDPDPHGEKLLQVEDPLSEA 656
           +KQRKAE +A+KE   K   +  A   +K  K      K VDPDP GEKL + EDPL EA
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEKLARTEDPLEEA 475

Query: 657 TKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHL 697
            K+LK L + SPD++ETHLL+FEV IRK+K LLALQA+K  
Sbjct: 476 MKFLKPLLQLSPDNIETHLLAFEVYIRKKKYLLALQALKAA 516

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat Back     alignment and domain information
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat Back     alignment and domain information
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat Back     alignment and domain information
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats Back     alignment and domain information
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat Back     alignment and domain information
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 900
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 100.0
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
KOG4626966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626966 consensus O-linked N-acetylglucosamine transferase 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 100.0
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.97
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 99.97
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.97
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.97
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.96
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.96
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.95
KOG0547606 consensus Translocase of outer mitochondrial membr 99.94
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.94
KOG2076895 consensus RNA polymerase III transcription factor 99.93
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.93
KOG0547606 consensus Translocase of outer mitochondrial membr 99.93
PRK14574822 hmsH outer membrane protein; Provisional 99.92
PRK11788389 tetratricopeptide repeat protein; Provisional 99.9
PRK11788389 tetratricopeptide repeat protein; Provisional 99.89
PLN03077857 Protein ECB2; Provisional 99.89
PRK14574822 hmsH outer membrane protein; Provisional 99.89
KOG1126638 consensus DNA-binding cell division cycle control 99.89
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.89
KOG1126638 consensus DNA-binding cell division cycle control 99.89
KOG2076895 consensus RNA polymerase III transcription factor 99.88
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.88
KOG2003840 consensus TPR repeat-containing protein [General f 99.88
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.88
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.87
PLN03077857 Protein ECB2; Provisional 99.86
PLN032181060 maturation of RBCL 1; Provisional 99.86
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.86
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.85
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.85
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.83
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.83
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.82
KOG2376652 consensus Signal recognition particle, subunit Srp 99.81
PRK12370553 invasion protein regulator; Provisional 99.81
PLN032181060 maturation of RBCL 1; Provisional 99.81
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.81
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.8
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.8
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.8
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.79
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.79
KOG2003840 consensus TPR repeat-containing protein [General f 99.79
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.79
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.79
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.78
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 99.78
PRK11189296 lipoprotein NlpI; Provisional 99.78
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.77
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.77
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.75
PRK12370553 invasion protein regulator; Provisional 99.74
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.74
PRK11189296 lipoprotein NlpI; Provisional 99.73
KOG1915677 consensus Cell cycle control protein (crooked neck 99.73
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.73
KOG1129478 consensus TPR repeat-containing protein [General f 99.72
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.72
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.72
KOG1125579 consensus TPR repeat-containing protein [General f 99.72
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.72
KOG1129478 consensus TPR repeat-containing protein [General f 99.7
KOG1125579 consensus TPR repeat-containing protein [General f 99.7
PLN02789320 farnesyltranstransferase 99.69
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.68
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.67
PLN02789320 farnesyltranstransferase 99.66
KOG1915677 consensus Cell cycle control protein (crooked neck 99.66
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.64
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.61
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.61
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.6
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.6
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.6
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.6
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.6
KOG2053932 consensus Mitochondrial inheritance and actin cyto 99.57
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.54
KOG2376652 consensus Signal recognition particle, subunit Srp 99.53
PRK15359144 type III secretion system chaperone protein SscB; 99.52
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.5
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.49
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.47
KOG2047835 consensus mRNA splicing factor [RNA processing and 99.43
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.41
PRK10370198 formate-dependent nitrite reductase complex subuni 99.39
PRK15359144 type III secretion system chaperone protein SscB; 99.38
PRK10370198 formate-dependent nitrite reductase complex subuni 99.36
KOG2047835 consensus mRNA splicing factor [RNA processing and 99.34
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.33
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.33
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.33
KOG0553304 consensus TPR repeat-containing protein [General f 99.32
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.31
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.31
PRK14720906 transcript cleavage factor/unknown domain fusion p 99.3
PRK14720906 transcript cleavage factor/unknown domain fusion p 99.3
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 99.27
PRK04841903 transcriptional regulator MalT; Provisional 99.26
KOG1128777 consensus Uncharacterized conserved protein, conta 99.25
PRK04841903 transcriptional regulator MalT; Provisional 99.25
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.23
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 99.19
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.18
KOG0553304 consensus TPR repeat-containing protein [General f 99.18
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.18
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 99.17
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 99.16
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.15
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.13
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.11
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.11
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.1
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.09
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 99.07
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.04
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.01
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.01
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.99
KOG1128777 consensus Uncharacterized conserved protein, conta 98.99
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.96
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.93
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.92
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.92
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.91
KOG2053932 consensus Mitochondrial inheritance and actin cyto 98.91
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.88
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.86
KOG1941518 consensus Acetylcholine receptor-associated protei 98.86
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.83
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.82
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.81
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.8
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.78
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.78
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.78
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.77
PRK11906458 transcriptional regulator; Provisional 98.77
PRK10803263 tol-pal system protein YbgF; Provisional 98.77
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.75
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.75
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 98.74
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.71
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.71
PRK15331165 chaperone protein SicA; Provisional 98.69
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.69
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.68
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.68
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.66
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.66
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.65
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.65
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.62
PRK15331165 chaperone protein SicA; Provisional 98.6
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.6
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.59
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.57
KOG4648536 consensus Uncharacterized conserved protein, conta 98.56
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.56
PRK11906458 transcriptional regulator; Provisional 98.56
PRK10803263 tol-pal system protein YbgF; Provisional 98.56
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.55
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.53
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.51
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.51
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.49
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.48
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.47
KOG2471696 consensus TPR repeat-containing protein [General f 98.47
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.46
KOG4648536 consensus Uncharacterized conserved protein, conta 98.44
COG3898531 Uncharacterized membrane-bound protein [Function u 98.44
PF13512142 TPR_18: Tetratricopeptide repeat 98.42
KOG4234271 consensus TPR repeat-containing protein [General f 98.42
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.36
PF12688120 TPR_5: Tetratrico peptide repeat 98.34
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.33
PF12688120 TPR_5: Tetratrico peptide repeat 98.33
PF1337173 TPR_9: Tetratricopeptide repeat 98.32
PF1337173 TPR_9: Tetratricopeptide repeat 98.32
KOG4234271 consensus TPR repeat-containing protein [General f 98.31
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.22
KOG2300629 consensus Uncharacterized conserved protein [Funct 98.21
COG4700251 Uncharacterized protein conserved in bacteria cont 98.21
KOG2471696 consensus TPR repeat-containing protein [General f 98.19
KOG1914656 consensus mRNA cleavage and polyadenylation factor 98.19
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.16
COG3898531 Uncharacterized membrane-bound protein [Function u 98.13
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.13
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.13
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.09
PF13512142 TPR_18: Tetratricopeptide repeat 98.08
KOG2300629 consensus Uncharacterized conserved protein [Funct 98.08
KOG1941518 consensus Acetylcholine receptor-associated protei 98.08
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.04
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.03
COG4700251 Uncharacterized protein conserved in bacteria cont 98.02
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 98.02
KOG1914656 consensus mRNA cleavage and polyadenylation factor 97.99
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.95
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.93
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.93
KOG4555175 consensus TPR repeat-containing protein [Function 97.89
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.88
PF06552186 TOM20_plant: Plant specific mitochondrial import r 97.87
KOG4555175 consensus TPR repeat-containing protein [Function 97.85
KOG1586288 consensus Protein required for fusion of vesicles 97.79
KOG09851666 consensus Vesicle coat protein clathrin, heavy cha 97.76
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.75
KOG2610491 consensus Uncharacterized conserved protein [Funct 97.72
KOG1586288 consensus Protein required for fusion of vesicles 97.72
KOG09851666 consensus Vesicle coat protein clathrin, heavy cha 97.7
KOG4507886 consensus Uncharacterized conserved protein, conta 97.69
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.67
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.63
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 97.57
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.57
PF1342844 TPR_14: Tetratricopeptide repeat 97.57
KOG2610491 consensus Uncharacterized conserved protein [Funct 97.52
PF1342844 TPR_14: Tetratricopeptide repeat 97.5
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.5
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 97.47
KOG1585308 consensus Protein required for fusion of vesicles 97.46
KOG1585308 consensus Protein required for fusion of vesicles 97.42
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 97.42
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.37
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.35
PF1343134 TPR_17: Tetratricopeptide repeat 97.33
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.32
KOG4507886 consensus Uncharacterized conserved protein, conta 97.31
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.3
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.27
PF1343134 TPR_17: Tetratricopeptide repeat 97.23
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.22
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.21
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 97.14
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.13
KOG1258577 consensus mRNA processing protein [RNA processing 97.12
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.12
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.12
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.12
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.11
KOG1258577 consensus mRNA processing protein [RNA processing 97.06
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.03
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 96.99
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 96.94
KOG0530318 consensus Protein farnesyltransferase, alpha subun 96.91
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.87
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 96.87
KOG1550552 consensus Extracellular protein SEL-1 and related 96.78
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 96.77
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.72
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.65
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.65
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.63
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 96.61
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 96.6
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 96.58
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.52
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.52
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.37
KOG1550552 consensus Extracellular protein SEL-1 and related 96.36
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 96.31
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.28
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.23
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 96.12
PRK15180831 Vi polysaccharide biosynthesis protein TviD; Provi 96.02
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 95.92
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 95.83
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 95.78
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 95.68
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 95.57
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 95.56
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 95.54
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 95.48
PRK10941269 hypothetical protein; Provisional 95.41
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 95.35
KOG3783546 consensus Uncharacterized conserved protein [Funct 95.31
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.22
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 95.19
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 95.14
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 95.1
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 95.08
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.07
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 95.04
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 95.0
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 94.98
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 94.98
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 94.96
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.95
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 94.86
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.8
PRK15180831 Vi polysaccharide biosynthesis protein TviD; Provi 94.75
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 94.71
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 94.67
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 94.64
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.51
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 94.32
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 94.22
KOG20411189 consensus WD40 repeat protein [General function pr 94.16
COG4649221 Uncharacterized protein conserved in bacteria [Fun 94.15
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 93.95
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 93.88
COG4976287 Predicted methyltransferase (contains TPR repeat) 93.88
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 93.8
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 93.75
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 93.61
KOG1310758 consensus WD40 repeat protein [General function pr 93.59
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 93.58
PRK10941269 hypothetical protein; Provisional 93.54
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 93.27
KOG0529421 consensus Protein geranylgeranyltransferase type I 93.23
PF09986214 DUF2225: Uncharacterized protein conserved in bact 93.21
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 93.14
KOG4814872 consensus Uncharacterized conserved protein [Funct 93.09
KOG20411189 consensus WD40 repeat protein [General function pr 93.05
COG4649221 Uncharacterized protein conserved in bacteria [Fun 92.91
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 92.87
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 92.76
PF09986214 DUF2225: Uncharacterized protein conserved in bact 92.68
KOG2422665 consensus Uncharacterized conserved protein [Funct 92.48
KOG3364149 consensus Membrane protein involved in organellar 92.34
KOG3783546 consensus Uncharacterized conserved protein [Funct 92.28
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 92.09
KOG1463411 consensus 26S proteasome regulatory complex, subun 91.74
KOG3364149 consensus Membrane protein involved in organellar 91.49
COG4976287 Predicted methyltransferase (contains TPR repeat) 91.21
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 91.15
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 90.95
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 90.77
KOG15381081 consensus Uncharacterized conserved protein WDR10, 90.72
COG1747711 Uncharacterized N-terminal domain of the transcrip 90.67
COG5191435 Uncharacterized conserved protein, contains HAT (H 90.48
KOG2422665 consensus Uncharacterized conserved protein [Funct 90.25
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 90.05
COG5191435 Uncharacterized conserved protein, contains HAT (H 89.77
KOG0529421 consensus Protein geranylgeranyltransferase type I 89.18
COG2912269 Uncharacterized conserved protein [Function unknow 89.17
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 88.91
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 88.82
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 88.8
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 87.71
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 87.2
KOG2581493 consensus 26S proteasome regulatory complex, subun 87.03
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 86.94
KOG1310758 consensus WD40 repeat protein [General function pr 86.56
COG5159421 RPN6 26S proteasome regulatory complex component [ 86.29
PF1286294 Apc5: Anaphase-promoting complex subunit 5 86.12
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 86.09
KOG15381081 consensus Uncharacterized conserved protein WDR10, 85.92
COG1747711 Uncharacterized N-terminal domain of the transcrip 85.86
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 85.03
COG5159421 RPN6 26S proteasome regulatory complex component [ 84.2
KOG2581493 consensus 26S proteasome regulatory complex, subun 83.92
COG5536328 BET4 Protein prenyltransferase, alpha subunit [Pos 83.83
PF09797365 NatB_MDM20: N-acetyltransferase B complex (NatB) n 83.66
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 83.14
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 82.72
PF1286294 Apc5: Anaphase-promoting complex subunit 5 82.65
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 82.27
COG2912269 Uncharacterized conserved protein [Function unknow 82.12
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 81.92
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 81.8
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 81.74
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 81.33
COG4941415 Predicted RNA polymerase sigma factor containing a 81.14
cd0268377 MIT_1 MIT: domain contained within Microtubule Int 81.06
KOG4814872 consensus Uncharacterized conserved protein [Funct 80.59
COG3629280 DnrI DNA-binding transcriptional activator of the 80.25
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=2e-107  Score=872.35  Aligned_cols=694  Identities=53%  Similarity=0.885  Sum_probs=652.7

Q ss_pred             CChHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 045355            5 LPSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYG   84 (900)
Q Consensus         5 l~~~~~~l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg   84 (900)
                      +||++..+|.++..+|+.++|+++++.++++|+++|+|++++.++|..+..+|+.++|..+.+.+++.++.++.|||.+|
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045355           85 LLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKA  164 (900)
Q Consensus        85 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  164 (900)
                      .+++..++|++|++||+.|+.++|+|.++|++++.++.++|+++.......+.++..|.....|+.++.+++..|++..|
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHH
Q 045355          165 VEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAE  244 (900)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  244 (900)
                      ..+++.|++.....++  ....+++++.++...++.+.|.+++|++++........+........|.+++++|++++|..
T Consensus       163 ~~il~ef~~t~~~~~s--~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  163 LEILEEFEKTQNTSPS--KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHhhccCCC--HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            9999999988764333  33489999999999999999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHh
Q 045355          245 LYRALLSMNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRP  324 (900)
Q Consensus       245 ~~~~al~~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~  324 (900)
                      .|+.++.++|++..++..+..+++-       -.+..+....+|....+.+|....++++++.++.+.++...+..|++.
T Consensus       241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk-------~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~  313 (700)
T KOG1156|consen  241 VYRRLLERNPDNLDYYEGLEKALGK-------IKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP  313 (700)
T ss_pred             HHHHHHhhCchhHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence            9999999999999999999999851       123445555899999999999999999999999999999999999999


Q ss_pred             hhhcCCChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCC--CCCCchhHHHHHHHHHHHHHHhCCHHHHHHH
Q 045355          325 LLTKGVPSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGRE--EKEPPSTLLWTLFFLAQHYDRRGQYDVALSK  402 (900)
Q Consensus       325 ~l~~~~p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~  402 (900)
                      .+.+|+|++|.++.++|.++.+.+.+++++..|...+.....++..+  ..++|++.+|+++.++++|...|+++.|..+
T Consensus       314 ~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y  393 (700)
T KOG1156|consen  314 LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY  393 (700)
T ss_pred             HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            99999999999999999999999999999999999998877776533  3569999999999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcccC-CcC
Q 045355          403 IDEAIEHTPTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTKDG-DQH  481 (900)
Q Consensus       403 ~~~al~~~P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~~~-~~~  481 (900)
                      ++.||.++|+.++.|+.+|+|+.+.|++++|..+++++.++|..||+||++|++|+++++++++|.+++++||+++ +..
T Consensus       394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~  473 (700)
T KOG1156|consen  394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV  473 (700)
T ss_pred             HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999966 678


Q ss_pred             CChhhhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhhhhhhhhhhHHHhhhhccHHHHHHHHHhhhhhcCCHHHHH
Q 045355          482 NNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHK  561 (900)
Q Consensus       482 ~~l~~~q~~w~~~~lg~~y~r~g~~~~Alk~~~~v~~~~~~~~~dq~df~~y~~rk~~~~~y~~~l~~~d~l~~~~~~~~  561 (900)
                      +++.+||||||.++.|++|+|+|++++|++.|+.|.+||.+|.+||||||+|||||||+|+||+||+|+|.|+++|+|++
T Consensus       474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~  553 (700)
T KOG1156|consen  474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLR  553 (700)
T ss_pred             hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCC
Q 045355          562 AAAGAIRCYIKLFDSPPRSTTEEDDDKADLPPSQKKKLKQKQRKAEARAKKEAEGKNEESSASGVSKSGKRHVKPVDPDP  641 (900)
Q Consensus       562 a~~~~~~~y~~l~d~~~~~~~~~~~~~~~~~~~~~kk~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~d~d~  641 (900)
                      |+++||+||++|||.|. .......+.++|| .|.||.++|+|++.++++++++.++.+......++++  .+...|.||
T Consensus       554 Aa~~Ai~iYl~l~d~p~-~~~~~~~~~~~ms-~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~--~~~~~d~~~  629 (700)
T KOG1156|consen  554 AAKGAIEIYLRLHDSPN-MYTNKADEIEKMS-DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSG--KPVDIDEDP  629 (700)
T ss_pred             HHHHHHHHHHHHhcCcc-cccccchhhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC--CCCCCCCcc
Confidence            99999999999999994 3345667788999 8999999999999999998887776655544444444  345678899


Q ss_pred             chhhhccCCCcHHHHHHHHHHHHhhCCCCcchhhhhhhhhHhhhhHHHHHHHHHHHHhhcCCCchhHHHH
Q 045355          642 HGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFEVNIRKQKILLALQAVKHLLRLNAEDPESHRCL  711 (900)
Q Consensus       642 ~~~~l~~~~~~l~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~al~~~~~~~~~~~~~~~~~~~~  711 (900)
                      +|++|+.|++||++|.+|+.+++.+.++++++|++.||||.|+||+++|++|++++..++++||.+|.++
T Consensus       630 ~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~l~~s~  699 (700)
T KOG1156|consen  630 FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPSLHTSM  699 (700)
T ss_pred             hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] Back     alignment and domain information
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query900
1na0_A125 Design Of Stable Alpha-Helical Arrays From An Ideal 3e-06
3kd7_A125 Designed Tpr Module (Ctpr390) In Complex With Its P 4e-05
2fo7_A136 Crystal Structure Of An 8 Repeat Consensus Tpr Supe 5e-05
2wqh_A125 Crystal Structure Of Ctpr3y3 Length = 125 6e-05
1na3_A91 Design Of Stable Alpha-Helical Arrays From An Ideal 2e-04
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 69  GVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLT 128
           G  +   S   W+  G  Y    +Y EAI+ Y+ AL +DP+N E   +L     +  D  
Sbjct: 1   GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 129 GFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE 169
             +E  Q+ L L PN+   W     +++   +  +A+E  +
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 Back     alignment and structure
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 Back     alignment and structure
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 Back     alignment and structure
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query900
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 3e-18
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 2e-04
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-15
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 4e-10
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 3e-05
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-15
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 7e-15
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 3e-11
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 4e-10
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 1e-09
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 8e-06
3u4t_A272 TPR repeat-containing protein; structural genomics 3e-13
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 5e-12
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 4e-10
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 6e-12
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 3e-08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-11
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 2e-09
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 4e-08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 4e-08
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-07
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 2e-06
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 1e-10
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-10
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 8e-09
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 9e-04
3tax_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 1e-10
3tax_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-10
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 1e-10
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 5e-08
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 6e-08
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 3e-06
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 3e-06
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 2e-05
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 1e-04
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 6e-04
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 4e-10
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 1e-08
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 7e-10
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 2e-08
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 1e-09
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 1e-09
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 4e-08
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 9e-05
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-09
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 6e-08
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 4e-07
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-05
4eqf_A365 PEX5-related protein; accessory protein, tetratric 8e-09
4eqf_A365 PEX5-related protein; accessory protein, tetratric 2e-07
4g1t_A472 Interferon-induced protein with tetratricopeptide 9e-09
4g1t_A472 Interferon-induced protein with tetratricopeptide 1e-08
4g1t_A472 Interferon-induced protein with tetratricopeptide 2e-08
4g1t_A472 Interferon-induced protein with tetratricopeptide 7e-06
4g1t_A472 Interferon-induced protein with tetratricopeptide 3e-05
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 2e-08
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 2e-08
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 2e-07
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 5e-07
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 9e-04
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 4e-08
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 2e-05
2gw1_A514 Mitochondrial precursor proteins import receptor; 4e-08
2gw1_A514 Mitochondrial precursor proteins import receptor; 7e-08
2gw1_A514 Mitochondrial precursor proteins import receptor; 5e-07
2gw1_A514 Mitochondrial precursor proteins import receptor; 6e-05
2gw1_A514 Mitochondrial precursor proteins import receptor; 8e-05
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 6e-08
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 9e-07
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 9e-05
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-07
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 2e-06
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-05
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 3e-04
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 1e-07
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 2e-04
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 5e-07
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 1e-05
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 1e-06
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 1e-06
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 7e-05
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 7e-05
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 2e-06
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 5e-05
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 8e-04
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 8e-06
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 5e-05
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 6e-05
3k9i_A117 BH0479 protein; putative protein binding protein, 9e-05
3k9i_A117 BH0479 protein; putative protein binding protein, 4e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 1e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 2e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 4e-04
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 1e-04
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 2e-04
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 3e-04
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 3e-04
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 46/271 (16%), Positives = 88/271 (32%), Gaps = 15/271 (5%)

Query: 12  LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVK 71
           +  L  + Y    +K   K    +++K P H   L +   TL  +++ +E + L    V 
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 72  NDIKSHVCWHVYGLLYRS-DREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGF 130
               + V W   G  Y     +   A +    A  ++              A   +    
Sbjct: 85  LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144

Query: 131 VETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILE-AYEGTLEDDYPPDNERCEHG 189
           +        L     +  +   + + L +N   A      A    +  + P      E G
Sbjct: 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDP--FVMHEVG 200

Query: 190 EMLLYKISLLEE-CGSFERALAEMHKKESKIVDKLAYKEQEVSL---LVKIGRLEEAAEL 245
            ++ ++    +     F  AL E  K     V    ++    +L     K+ +  EA + 
Sbjct: 201 -VVAFQNGEWKTAEKWFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 246 YRALLSMNPDNYSYYEGLQKCLGLYRDNGNY 276
           +R  L + P N S Y  +      +   GN+
Sbjct: 259 HRQALVLIPQNASTYSAIGYI---HSLMGNF 286
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query900
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.98
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.97
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.97
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.96
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.96
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.96
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.95
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.94
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.93
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.93
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.93
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.93
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.93
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.93
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.93
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.92
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.92
3u4t_A272 TPR repeat-containing protein; structural genomics 99.91
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.91
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.91
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.9
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.9
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.9
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.89
3u4t_A272 TPR repeat-containing protein; structural genomics 99.89
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.89
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.88
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.88
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.87
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.86
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.86
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.86
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.86
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.86
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.85
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.85
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.85
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.85
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.85
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.85
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.84
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.84
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.84
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.84
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.84
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.83
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.83
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.83
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.83
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.83
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.82
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.81
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.81
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.81
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.8
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.8
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.79
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.79
4gyw_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.79
4gyw_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.78
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.78
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.77
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.77
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.75
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.74
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.74
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.73
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.73
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.73
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.72
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.72
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.72
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.72
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.71
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.7
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.69
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.69
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.69
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.69
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.68
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.68
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.68
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.67
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.67
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.67
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.66
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.65
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.63
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.63
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.62
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.62
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.62
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.62
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.61
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.59
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.57
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.56
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.56
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.56
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.55
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.55
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.55
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.53
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.52
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.52
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.51
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.5
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.5
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.48
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.48
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.48
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.47
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.47
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.47
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.46
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.45
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.45
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.43
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.43
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.43
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.43
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.43
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.42
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.42
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.41
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.41
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.41
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.4
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.4
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.39
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.39
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.38
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.38
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.38
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.37
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.37
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.36
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.36
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.36
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.35
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.35
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.34
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.34
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.34
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.34
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.34
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.33
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.33
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.33
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.33
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.32
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.32
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.32
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.31
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.31
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.3
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.29
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.29
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.27
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.26
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.26
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.25
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.23
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.23
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.22
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.22
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.21
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.21
1wao_1477 Serine/threonine protein phosphatase 5; hydrolase, 99.21
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.21
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.18
3k9i_A117 BH0479 protein; putative protein binding protein, 99.17
1wao_1477 Serine/threonine protein phosphatase 5; hydrolase, 99.17
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.17
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.16
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.16
3k9i_A117 BH0479 protein; putative protein binding protein, 99.16
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.16
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.11
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.11
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.1
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.03
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.98
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.96
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.93
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.89
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.89
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.87
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.84
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.79
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.74
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.7
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.7
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.67
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.67
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.66
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.42
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.42
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.37
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.36
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.34
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.33
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.27
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.21
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.15
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.14
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.08
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.08
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.04
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 98.03
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 97.93
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.85
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.84
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.71
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.51
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 97.29
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.18
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 97.01
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 96.94
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 96.91
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 96.42
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 96.36
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 96.15
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 95.99
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 95.74
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 95.55
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 95.45
1qsa_A618 Protein (soluble lytic transglycosylase SLT70); al 95.26
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 95.15
1qsa_A618 Protein (soluble lytic transglycosylase SLT70); al 94.99
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.86
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 94.17
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 94.1
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 93.64
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 93.06
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 93.05
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 92.82
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 92.34
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 92.04
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 91.77
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 91.71
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 91.7
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 91.51
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 91.32
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 90.8
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 90.63
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 90.53
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 90.49
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 90.22
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 88.6
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 88.09
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 86.77
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 86.1
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 81.6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-36  Score=342.23  Aligned_cols=385  Identities=16%  Similarity=0.139  Sum_probs=339.1

Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccC
Q 045355           13 FKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDRE   92 (900)
Q Consensus        13 ~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   92 (900)
                      +..|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|..++++++..+|.+..+|..+|.++...|+
T Consensus         3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045355           93 YREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYE  172 (900)
Q Consensus        93 ~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  172 (900)
                      +++|+.+|+++++++|++..++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+   ..|.
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~  159 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK---ACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH---HHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999   4555


Q ss_pred             hhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045355          173 GTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLSM  252 (900)
Q Consensus       173 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  252 (900)
                      +++...       |....++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|++++..
T Consensus       160 ~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          160 KAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566554       5667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhhhhchhhcccchHHHHHHHHhHHhhhhcCCCh
Q 045355          253 NPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAVKRIPLDFLQGEKFREAAFNYVRPLLTKGVPS  332 (900)
Q Consensus       253 ~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l~l~~~~~~~~~~a~~~~~~~~l~~~~p~  332 (900)
                      +|++...+..++.++        ...|++++|+..|++++...|....                                
T Consensus       233 ~p~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~al~~~p~~~~--------------------------------  272 (388)
T 1w3b_A          233 SPNHAVVHGNLACVY--------YEQGLIDLAIDTYRRAIELQPHFPD--------------------------------  272 (388)
T ss_dssp             CTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHTCSSCHH--------------------------------
T ss_pred             CcCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhCCCCHH--------------------------------
Confidence            999999999999998        5678999999999988776654331                                


Q ss_pred             hhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 045355          333 LFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHTPT  412 (900)
Q Consensus       333 ~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~P~  412 (900)
                                                                       +++.+|.++...|++++|+..|+++++..|.
T Consensus       273 -------------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          273 -------------------------------------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             -------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence                                                             4567777888888888888888888888888


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCChHHHHHHHHHhcc-cCCcCCChhhhhHHH
Q 045355          413 VIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAALFTK-DGDQHNNLHDMQCMW  491 (900)
Q Consensus       413 ~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~~eeA~~~~~~~~~-~~~~~~~l~~~q~~w  491 (900)
                      ++.++..+|.++...|++++|+..|+++++++|++......++..+.+.|++++|++.+....+ ++.. .        .
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~--------~  374 (388)
T 1w3b_A          304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-A--------D  374 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-H--------H
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-H--------H
Confidence            8888888888888888888888888888888888877777777788888888888887776665 2221 1        1


Q ss_pred             HHHHHHHHHHHcCC
Q 045355          492 YELASGESYFRQGD  505 (900)
Q Consensus       492 ~~~~lg~~y~r~g~  505 (900)
                      ....+|.++..+|+
T Consensus       375 a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          375 AYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHhHHHHHHHccC
Confidence            23366777776653
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 900
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 4e-13
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 3e-12
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-07
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 7e-04
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 9e-04
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 1e-10
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 4e-08
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 1e-05
d1elwa_117 a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 3e-07
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 6e-07
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 2e-06
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 3e-05
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 8e-05
d1ya0a1497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 3e-04
d2c2la1201 a.118.8.1 (A:24-224) STIP1 homology and U box-cont 1e-06
d2c2la1201 a.118.8.1 (A:24-224) STIP1 homology and U box-cont 4e-05
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 4e-06
d2h6fa1315 a.118.6.1 (A:55-369) Protein farnesyltransferase a 1e-05
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 1e-05
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 2e-04
d1nzna_122 a.118.8.1 (A:) Mitochondria fission protein Fis1 { 3e-05
d1kt1a1168 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M 4e-04
d1p5qa1170 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d 6e-04
d1ihga1169 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau 7e-04
d2fbna1153 a.118.8.1 (A:22-174) Putative 70 kda peptidylproly 0.001
d1elra_128 a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 0.004
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 4e-13
 Identities = 38/262 (14%), Positives = 70/262 (26%), Gaps = 44/262 (16%)

Query: 6   PSKDANLFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYEL 65
           P+       L        +    +   +  +   P   +     G  L        A   
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 66  VRLGVKNDIKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMR 125
               +       V       +Y        AI  YR A+ + P   +   +L+    +  
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 126 DLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAYEGTLEDDYPPDNER 185
            +    +     L L P H  +    A       N  +AV                    
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR------------------- 326

Query: 186 CEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAEL 245
                              + +AL E+  + +     LA      S+L + G+L+EA   
Sbjct: 327 ------------------LYRKAL-EVFPEFAAAHSNLA------SVLQQQGKLQEALMH 361

Query: 246 YRALLSMNPDNYSYYEGLQKCL 267
           Y+  + ++P     Y  +   L
Sbjct: 362 YKEAIRISPTFADAYSNMGNTL 383
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query900
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.92
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.9
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.83
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.82
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.81
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.8
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.78
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.75
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.75
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.66
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.55
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.55
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.53
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.51
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.5
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.48
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.46
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.46
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.44
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.42
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.42
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.41
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.39
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.35
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.32
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.32
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.32
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.31
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.3
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.28
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.26
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.25
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.24
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.23
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.21
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.21
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.19
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.16
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.12
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.1
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.85
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.85
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.82
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.77
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.73
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.6
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.48
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.34
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.99
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.7
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.7
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.58
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.11
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.11
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.76
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.04
d1o9da_236 14-3-3-like protein C {Common tobacco (Nicotiana t 82.7
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=307.28  Aligned_cols=386  Identities=17%  Similarity=0.146  Sum_probs=338.3

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 045355           12 LFKLIVKSYETKQYKKGLKAADAILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRLGVKNDIKSHVCWHVYGLLYRSDR   91 (900)
Q Consensus        12 l~~~a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g   91 (900)
                      +|..|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045355           92 EYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVSHHLNSNGSKAVEILEAY  171 (900)
Q Consensus        92 ~~~eAi~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~  171 (900)
                      ++++|+..+..++..+|.........+......+.+..+...........+.........+......+....+..   .+
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  158 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA---CY  158 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH---HH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHH---HH
Confidence            999999999999999999999999999999999999999999999999999888888899999999999988884   44


Q ss_pred             HhhhccCCCCCcchhchhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045355          172 EGTLEDDYPPDNERCEHGEMLLYKISLLEECGSFERALAEMHKKESKIVDKLAYKEQEVSLLVKIGRLEEAAELYRALLS  251 (900)
Q Consensus       172 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~Al~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  251 (900)
                      .+.+...       |....++..+|.++...|++++|...+++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus       159 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         159 LKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             HHhhccC-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence            4444443       556688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHhcccccCCCCCCCcHHHHHHHHHHHHHhcCcchhh-hhchhhcccchHHHHHHHHhHHhhhhcCC
Q 045355          252 MNPDNYSYYEGLQKCLGLYRDNGNYSSGEIDELDALYKSLAQQYTWSSAV-KRIPLDFLQGEKFREAAFNYVRPLLTKGV  330 (900)
Q Consensus       252 ~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~l~l~~~~~~~~~~a~~~~~~~~l~~~~  330 (900)
                      .+|.....+..++.++        ...|++++|+..|+++++..|+.... ..++..+...+++.++...+...      
T Consensus       232 ~~~~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------  297 (388)
T d1w3ba_         232 LSPNHAVVHGNLACVY--------YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------  297 (388)
T ss_dssp             HCTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH------
T ss_pred             HhhhHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh------
Confidence            9999999999999988        55789999999999999999876633 34444444444544444433222      


Q ss_pred             ChhhhchhhhhcCCChHHHHHHHHHHHHHhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 045355          331 PSLFSDLSPLYDQPGKADILEQLILELEHSIGTTGKYPGREEKEPPSTLLWTLFFLAQHYDRRGQYDVALSKIDEAIEHT  410 (900)
Q Consensus       331 p~~~~~L~~ly~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~la~~y~~~g~~~~Al~~~~~al~~~  410 (900)
                                                    ....+..            .++++.+|.++...|++++|+.+|+++++.+
T Consensus       298 ------------------------------~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         298 ------------------------------LRLCPTH------------ADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             ------------------------------HHHCTTC------------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             ------------------------------hccCCcc------------chhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                                          2221111            2267889999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCChhHHHHHHHHHHHcCC
Q 045355          411 PTVIDLYSVKSRILKHAGDLAAAATLADEARCMDLADRYVNSECVKRMLQADQ  463 (900)
Q Consensus       411 P~~~~~~~~la~i~~~~G~~~eA~~~~~~al~ldp~d~~l~~~~a~~~l~~g~  463 (900)
                      |+++.+++.+|.+|...|++++|+.+|+++++++|++......++..+.+.|+
T Consensus       336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999888888888877764
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure