Citrus Sinensis ID: 045356

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MGSLPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDPTS
ccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHccccEEEccHHHHHHHHHcccccccEEEccccccHHHHHHHHHccccEEEcccHHHHHHHHHHccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccHHHHHHHHHHHccccccccccEEEEccccHHccccEEEEEEEEEEEEccccEEEEEEccccccccccccccccccccccEEcccccccccEEEEEEEcccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEcccccc
ccccccccccccccccccccccccEEEEcccccEEEEccccHHHHHHHccccEEEEcHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHccccccEEcHHHHHHHHHccccHcHEEEccccccHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHEEEEEEEEcccccEEEEEEcccccccccHHHHccccccEEEEEEcccccccccEEEEEEccccccccHHHccccccccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccc
mgslpkeitctldlnapalvvrgervptitkdgglLEFMESIILKRqeldepfyvLDLGVVISLYHQLIsnlpmvhpyyavkcnpepAILETLAALgsnfdcaspSEIQAVLALsvspdriiyanackpvshIKYAASVgvnlttfdsIQELDKIRKWHPKCELLIRikspvdggarypldskfganpEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDigggfacnpgfHEAASIIKDAIqtyfpnetaaghlsvisepgrflaDTAFTLATKVIGKRVRDELREYWIndgkygsfgwlSSEEVIAKCGAHILAsashsnnrtyrstvfgptcaavdkvftghqlpelevsdwlvfsdmgayttacgtnfngfntaaiptyvvrsdpts
mgslpkeitctldlnapalvvrgervptitkdggllEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRikspvdggaRYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGtnfngfntaaiptyvvrsdpts
MGSLPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDPTS
*******ITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVV******
*************************VPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAH***********TYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDP**
MGSLPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDPTS
*********CTLDLNAP*LVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRS****
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MGSLPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDPTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
P50134431 Ornithine decarboxylase O N/A no 0.928 0.902 0.557 1e-120
O22616431 Ornithine decarboxylase O N/A no 0.926 0.900 0.556 1e-118
Q8S3N2435 Ornithine decarboxylase O N/A no 0.928 0.894 0.544 1e-116
P07805423 Ornithine decarboxylase O N/A no 0.842 0.834 0.397 1e-76
P27117461 Ornithine decarboxylase O yes no 0.847 0.770 0.416 4e-76
P09057461 Ornithine decarboxylase O yes no 0.844 0.767 0.419 4e-76
P27119461 Ornithine decarboxylase O N/A no 0.844 0.767 0.420 7e-76
P11926461 Ornithine decarboxylase O yes no 0.844 0.767 0.417 8e-76
P00860461 Ornithine decarboxylase O no no 0.844 0.767 0.417 1e-75
P27118450 Ornithine decarboxylase ( yes no 0.828 0.771 0.414 2e-75
>sp|P50134|DCOR_DATST Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1 Back     alignment and function desciption
 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/402 (55%), Positives = 287/402 (71%), Gaps = 13/402 (3%)

Query: 24  ERVPTITKDGGLLEFMESIILKR-QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVK 82
            +V  +++D  L +FM SII ++ Q+  +PFYVLDLG V+SL  Q  + LP + P+YAVK
Sbjct: 36  RKVVPLSRDA-LQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQWNAGLPNIRPFYAVK 94

Query: 83  CNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVN 142
           CNPEP+ L  L+A+GSNFDCAS +EI+ VL+L +SPDRI++AN CKP S I +AA VGVN
Sbjct: 95  CNPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVN 154

Query: 143 LTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASG 202
           LTTFDS  E+ KIRK HPKCELL+RIK   DG AR P+  K+GA PEEV  LL  AQA+ 
Sbjct: 155 LTTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGALPEEVEPLLRTAQAAR 214

Query: 203 LAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNPGFHEA 262
           L V GV+FHIGS   +  A+  AIA AK VFETAAR GM+KM VLDIGGGF     F  A
Sbjct: 215 LTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLDIGGGFTSGHQFTTA 274

Query: 263 ASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGK 322
           ++ ++ A++ +F +E     L++I+EPGRF A+TAFTLAT +IGKRVR ELREYWINDG 
Sbjct: 275 SAAVRSALEQHFHDEQ---ELTIIAEPGRFFAETAFTLATTIIGKRVRGELREYWINDGL 331

Query: 323 YGSFGWLSSEEVIAKCGAHILASASHSNN------RTYRSTVFGPTCAAVDKVFTGHQLP 376
           YGS   +  +   A   A  LA  S+ +N      +T+ STVFGPTC A+D V   +QLP
Sbjct: 332 YGSMNCVLYDH--ATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLP 389

Query: 377 ELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRSDPT 418
           EL+V+DWL+F +MGAYT A G+NFNGFNT+AI T++  + P+
Sbjct: 390 ELQVNDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYAYPS 431

Datura stramonium (taxid: 4076)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|O22616|DCOR_SOLLC Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2 Back     alignment and function description
>sp|Q8S3N2|DCOR_CAPAN Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1 Back     alignment and function description
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2 Back     alignment and function description
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1 Back     alignment and function description
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 Back     alignment and function description
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 Back     alignment and function description
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2 Back     alignment and function description
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
224085964416 predicted protein [Populus trichocarpa] 0.976 0.983 0.615 1e-142
349617697413 ornithine decarboxylase [Erythroxylum co 0.971 0.985 0.609 1e-140
124298701411 putative ornithine decarboxylase [Theobr 0.976 0.995 0.605 1e-140
359491943411 PREDICTED: LOW QUALITY PROTEIN: ornithin 0.966 0.985 0.594 1e-133
334351364457 lysine/ornithine decarboxylase [Sophora 0.935 0.857 0.573 1e-127
334351366455 lysine/ornithine decarboxylase [Echinoso 0.935 0.861 0.568 1e-126
224061945381 predicted protein [Populus trichocarpa] 0.890 0.979 0.617 1e-126
449500419419 PREDICTED: ornithine decarboxylase-like 0.894 0.894 0.590 1e-120
357467121428 Ornithine decarboxylase [Medicago trunca 0.942 0.922 0.555 1e-120
334351358440 lysine/ornithine decarboxylase [Lupinus 0.940 0.895 0.543 1e-120
>gi|224085964|ref|XP_002307756.1| predicted protein [Populus trichocarpa] gi|222857205|gb|EEE94752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/421 (61%), Positives = 315/421 (74%), Gaps = 12/421 (2%)

Query: 1   MGSLPKEITCTLDLNAPALVVRGERVPTITKDGGLLEFMESIILKRQELDEPFYVLDLGV 60
           MGS+PK     + L AP   V+G+RV TI+K+G L EFM SII K+QE  EPFYVLDLG 
Sbjct: 1   MGSIPKNPHAGVLLGAPG--VKGKRVTTISKNG-LTEFMLSIISKKQETKEPFYVLDLGE 57

Query: 61  VISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDR 120
           V +L  + +  LPMVHP+YAVKCNP+PA+L +LAALGSNFDCAS +EI++VL+L VSP+R
Sbjct: 58  VTALMDKWLMTLPMVHPFYAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNR 117

Query: 121 IIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPL 180
           I+YAN CK  SHIKYAASVGVNLTTFDS +ELDKIRKWH KC LLIRIK+P D GAR PL
Sbjct: 118 IVYANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPL 177

Query: 181 DSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLG 240
             K+GA P+EV  LL AAQ + L V+GV+FHIGS AT   A+  AIA AK+VFE A RLG
Sbjct: 178 GPKYGALPDEVTPLLQAAQTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLG 237

Query: 241 MTKMRVLDIGGGFACNPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTL 300
           M  M++L+IGGGF     F EAA+ IK A+Q YFPNE     L+VISEPGRF A++AFTL
Sbjct: 238 MPGMKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPG---LTVISEPGRFFAESAFTL 294

Query: 301 ATKVIGKRVRDELREYWINDGKYGSFGWLSSEEVIAKCGAHILASASHSN-----NRTYR 355
           AT +IGKRVR +LREYWINDG YGS   +  +     C   +  +++H+N      R Y 
Sbjct: 295 ATNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITC-TPLACNSNHANLTCKGLRAYS 353

Query: 356 STVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYVVRS 415
           STVFGPTC A+D V TGHQLPEL+++DWLVF +MGAYT A G++FNGFNTAAI T++  S
Sbjct: 354 STVFGPTCDALDTVLTGHQLPELQINDWLVFPNMGAYTAAAGSSFNGFNTAAILTHLASS 413

Query: 416 D 416
           +
Sbjct: 414 N 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|349617697|gb|AEQ02350.1| ornithine decarboxylase [Erythroxylum coca] Back     alignment and taxonomy information
>gi|124298701|gb|ABN04356.1| putative ornithine decarboxylase [Theobroma cacao] Back     alignment and taxonomy information
>gi|359491943|ref|XP_003634343.1| PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|334351364|dbj|BAK32800.1| lysine/ornithine decarboxylase [Sophora flavescens] Back     alignment and taxonomy information
>gi|334351366|dbj|BAK32801.1| lysine/ornithine decarboxylase [Echinosophora koreensis] Back     alignment and taxonomy information
>gi|224061945|ref|XP_002300677.1| predicted protein [Populus trichocarpa] gi|222842403|gb|EEE79950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449500419|ref|XP_004161092.1| PREDICTED: ornithine decarboxylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357467121|ref|XP_003603845.1| Ornithine decarboxylase [Medicago truncatula] gi|355492893|gb|AES74096.1| Ornithine decarboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|334351358|dbj|BAK32797.1| lysine/ornithine decarboxylase [Lupinus angustifolius] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
UNIPROTKB|P27117461 ODC1 "Ornithine decarboxylase" 0.854 0.776 0.417 1.3e-70
UNIPROTKB|P11926461 ODC1 "Ornithine decarboxylase" 0.852 0.774 0.415 1.6e-70
UNIPROTKB|E2R8D9461 ODC1 "Uncharacterized protein" 0.854 0.776 0.417 2.6e-70
UNIPROTKB|I3LTY3449 ODC1 "Uncharacterized protein" 0.854 0.797 0.414 2.6e-70
MGI|MGI:97402461 Odc1 "ornithine decarboxylase, 0.852 0.774 0.415 3.3e-70
RGD|3227461 Odc1 "ornithine decarboxylase 0.847 0.770 0.420 4.3e-70
POMBASE|SPAC144.04c432 spe1 "ornithine decarboxylase 0.861 0.835 0.407 7e-70
UNIPROTKB|P27118450 ODC1 "Ornithine decarboxylase" 0.852 0.793 0.407 1.8e-69
RGD|1562036400 RGD1562036 "similar to ornithi 0.844 0.885 0.416 2.4e-69
UNIPROTKB|F1NKA3450 ODC1 "Ornithine decarboxylase" 0.852 0.793 0.405 3e-69
UNIPROTKB|P27117 ODC1 "Ornithine decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 161/386 (41%), Positives = 229/386 (59%)

Query:    51 EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
             + FYV DLG ++  + + +  LP V P+YAVKCN    I++TLAA+G+ FDCAS +EIQ 
Sbjct:    38 DAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQL 97

Query:   111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
             V +L V P+RIIYAN CK VS IKYAA+ GV + TFDS  EL K+ + HPK +L++RI +
Sbjct:    98 VQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT 157

Query:   171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
               D  A   L  KFGA  +    LL  A+   + VIGV+FH+GS  T+ + F  AI++A+
Sbjct:   158 D-DSKAVCRLSVKFGATLKTSRLLLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDAR 216

Query:   231 TVFETAARLGMTKMRVLDIGGGFACNPG----FHEAASIIKDAIQTYFPNETAAGHLSVI 286
              VF+  A +G   M +LDIGGGF  +      F E  S+I  A+  YFP+++    + +I
Sbjct:   217 CVFDMGAEVGFN-MYLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPSDSG---VRII 272

Query:   287 SEPGRFLADTAFTLATKVIGKRV-------RDELRE-------YWINDGKYGSFGWLSSE 332
             +EPGR+   +AFTLA  +I K++        D+  E       Y++NDG YGSF  +  +
Sbjct:   273 AEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEESTDRTFMYYVNDGVYGSFNCILYD 332

Query:   333 EVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAY 392
                 K    +L      + + Y S+++GPTC  +D++     LPE+ V DW++F +MGAY
Sbjct:   333 HAHVK---PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAY 389

Query:   393 TTACGTNFNGFNTAAIPTYVVRSDPT 418
             T A  + FNGF    I  Y V S PT
Sbjct:   390 TVAAASTFNGFQRPTI--YYVMSGPT 413
GO:0033387 "putrescine biosynthetic process from ornithine" evidence=IEA
GO:0004586 "ornithine decarboxylase activity" evidence=IEA
UNIPROTKB|P11926 ODC1 "Ornithine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8D9 ODC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTY3 ODC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:97402 Odc1 "ornithine decarboxylase, structural 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3227 Odc1 "ornithine decarboxylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPAC144.04c spe1 "ornithine decarboxylase Spe1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|P27118 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1562036 RGD1562036 "similar to ornithine decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKA3 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54UF3DCOR_DICDI4, ., 1, ., 1, ., 1, 70.37790.91880.8351yesno
O22616DCOR_SOLLC4, ., 1, ., 1, ., 1, 70.55610.92600.9002N/Ano
P41931DCOR_CAEEL4, ., 1, ., 1, ., 1, 70.38710.84960.8436yesno
P40807DCOR1_DROME4, ., 1, ., 1, ., 1, 70.39300.81140.8629yesno
Q8S3N2DCOR_CAPAN4, ., 1, ., 1, ., 1, 70.54470.92840.8942N/Ano
Q9UQW9DCOR_SCHPO4, ., 1, ., 1, ., 1, 70.41460.82570.8009yesno
P50134DCOR_DATST4, ., 1, ., 1, ., 1, 70.55720.92840.9025N/Ano
O50657DCLO_SELRU4, ., 1, ., 1, ., 1, 80.35210.83290.8880yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 1e-160
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-83
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 1e-81
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 2e-76
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 4e-75
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 9e-47
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 2e-38
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 2e-37
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 3e-37
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 2e-29
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 9e-24
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 7e-23
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 1e-22
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 2e-22
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 2e-21
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 7e-20
PLN02537410 PLN02537, PLN02537, diaminopimelate decarboxylase 2e-17
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 4e-17
cd06843377 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5 6e-16
COG1166 652 COG1166, SpeA, Arginine decarboxylase (spermidine 2e-12
TIGR01273 624 TIGR01273, speA, arginine decarboxylase, biosynthe 3e-12
PLN02439 559 PLN02439, PLN02439, arginine decarboxylase 1e-07
PRK05354 634 PRK05354, PRK05354, arginine decarboxylase; Provis 3e-07
PRK11165420 PRK11165, PRK11165, diaminopimelate decarboxylase; 2e-05
cd06829346 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-ph 4e-04
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information 
 Score =  456 bits (1176), Expect = e-160
 Identities = 178/371 (47%), Positives = 236/371 (63%), Gaps = 18/371 (4%)

Query: 50  DEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQ 109
           + PF V+DLG V+  Y +    LP V P+YAVKCNP+PA+L TLAALG+ FDCAS  EI+
Sbjct: 1   ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIE 60

Query: 110 AVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIK 169
            VL L VSP+RII+AN CK +S I+YAA +GV L TFDS  EL+KI K  P  +LL+RI 
Sbjct: 61  LVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIA 120

Query: 170 SPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEA 229
           +  D GA  PL  KFGA+PEE   LL  A+  GL V+GV+FH+GS+ T+  A+  AIA+A
Sbjct: 121 TD-DSGALCPLSRKFGADPEEARELLRRAKELGLNVVGVSFHVGSQCTDPSAYVDAIADA 179

Query: 230 KTVFETAARLGMTKMRVLDIGGGF-----ACNPGFHEAASIIKDAIQTYFPNETAAGHLS 284
           + VF+ AA LG  K+++LDIGGGF        P F E A++I  A+  YFP+E     + 
Sbjct: 180 REVFDEAAELGF-KLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPDE----GVR 234

Query: 285 VISEPGRFLADTAFTLATKVIGKRVR---DELREYWINDGKYGSFGWLSSEEVIAKCGAH 341
           +I+EPGR+L  +AFTLA  VI KR R   D  R Y++NDG YGSF  +  + +       
Sbjct: 235 IIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPP--- 291

Query: 342 ILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPE-LEVSDWLVFSDMGAYTTACGTNF 400
            +      +   Y S+++GPTC ++D ++    LPE L V DWL+F +MGAYTTA  + F
Sbjct: 292 RVLKDGGRDGELYPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTF 351

Query: 401 NGFNTAAIPTY 411
           NGF    I   
Sbjct: 352 NGFPPPKIVYV 362

This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein. Length = 362
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic Back     alignment and domain information
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase Back     alignment and domain information
>gnl|CDD|235427 PRK05354, PRK05354, arginine decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|236867 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|143502 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
PRK05354634 arginine decarboxylase; Provisional 100.0
TIGR01273624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PLN02439559 arginine decarboxylase 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 100.0
PRK00053363 alr alanine racemase; Reviewed 100.0
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.97
PRK13340406 alanine racemase; Reviewed 99.97
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.97
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.97
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.97
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.97
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 99.96
PRK03646355 dadX alanine racemase; Reviewed 99.96
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.95
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.95
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.94
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.94
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.93
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.92
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.92
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.91
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.9
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.85
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.84
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.84
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.84
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.83
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.83
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.71
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.7
COG3616368 Predicted amino acid aldolase or racemase [Amino a 99.59
COG3457353 Predicted amino acid racemase [Amino acid transpor 99.49
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 99.36
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 99.25
KOG3157244 consensus Proline synthetase co-transcribed protei 97.93
PF00842129 Ala_racemase_C: Alanine racemase, C-terminal domai 97.82
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 91.59
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 90.84
PRK01060281 endonuclease IV; Provisional 87.93
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 84.94
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 84.86
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-70  Score=522.71  Aligned_cols=370  Identities=45%  Similarity=0.791  Sum_probs=330.1

Q ss_pred             HHHHHHHH--Hhhc--CCCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHH
Q 045356           35 LLEFMESI--ILKR--QELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA  110 (419)
Q Consensus        35 ~~~~~~~~--~~~~--~~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~  110 (419)
                      +..+++++  .+..  .....|||++|+.+|.+++++|++.+|+++++||||+|+++.|++.|.+.|+||+|+|..|+++
T Consensus        36 ~r~~i~e~~~~~~~~~~~e~~aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~l  115 (448)
T KOG0622|consen   36 LRNLIEEGTLVAERMETGEKQAFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDL  115 (448)
T ss_pred             HHHHHHHhhhhhhhccccccCceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHH
Confidence            44555544  3332  3457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHH
Q 045356          111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEE  190 (419)
Q Consensus       111 a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee  190 (419)
                      ++..|++|++|+|.+|+|+.+.|++|++.|+...++||..|+.++.+.+|+++++|||+++.+. +.+....|||++.++
T Consensus       116 vl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~-a~~~l~~KFG~~~~~  194 (448)
T KOG0622|consen  116 VLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDST-ATCRLNLKFGCSLDN  194 (448)
T ss_pred             HHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCCc-ccccccCccCCCHHH
Confidence            9999999999999999999999999999999988999999999999999999999999998753 234456899999999


Q ss_pred             HHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCCC----CHHHHHHHH
Q 045356          191 VAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACNP----GFHEAASII  266 (419)
Q Consensus       191 ~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~~----~~~~~~~~i  266 (419)
                      +.++++.+++++++++|++||+||.+.+++.|.++++.++.++++..+.| ..+.+||+||||++..    .|+++++.|
T Consensus       195 ~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~G-f~m~~LdiGGGf~g~~~~~~~fe~i~~~I  273 (448)
T KOG0622|consen  195 CRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELG-FEMDILDIGGGFPGDEGHAVVFEEIADVI  273 (448)
T ss_pred             HHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcC-ceEEEeecCCCCCCccchhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999 7899999999999843    488999999


Q ss_pred             HHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeCC------------ceEEEEecCCCCCcchhhh--H
Q 045356          267 KDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDE------------LREYWINDGKYGSFGWLSS--E  332 (419)
Q Consensus       267 ~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~~------------~~~~~i~dg~~~~~~~~~~--~  332 (419)
                      +.+|.+||++-    .+++|+|||||+|+.|.+|++.|+++|..+.            +..|+++||+|++|++++|  +
T Consensus       274 n~ald~~Fp~~----~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~~  349 (448)
T KOG0622|consen  274 NTALDLYFPSG----GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDHQ  349 (448)
T ss_pred             HHHHHHhCCCC----CceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhccc
Confidence            99999999962    3899999999999999999999999998532            2369999999999999998  4


Q ss_pred             HHHhhcceeeecccCCCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCCCCCCccEEE
Q 045356          333 EVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGFNTAAIPTYV  412 (419)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~~~~~~~~~~  412 (419)
                      +|.    +.+.....+ +.+.++..|+||||++.|++.++..||.+.+||||+|.+|||||++++|.||||+.|.+  |+
T Consensus       350 ~~i----~~~~~~~~e-~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~--~y  422 (448)
T KOG0622|consen  350 HPI----PLVVKDPSE-EEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKI--YY  422 (448)
T ss_pred             CCc----ccccCCCcc-ccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCce--EE
Confidence            544    322222221 13368899999999999999999999999999999999999999999999999998776  99


Q ss_pred             EecCC
Q 045356          413 VRSDP  417 (419)
Q Consensus       413 ~~~~~  417 (419)
                      ++|..
T Consensus       423 ~~s~~  427 (448)
T KOG0622|consen  423 VMSDG  427 (448)
T ss_pred             Eeccc
Confidence            98864

>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5 Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK01060 endonuclease IV; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 7e-78
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 7e-78
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 3e-77
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 3e-77
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 5e-77
2on3_A461 A Structural Insight Into The Inhibition Of Human A 6e-77
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 6e-77
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 1e-76
2nva_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 3e-68
2nv9_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 4e-68
4aib_A395 Crystal Structure Of Ornithine Decarboxylase From E 7e-64
3btn_A448 Crystal Structure Of Antizyme Inhibitor, An Ornithi 1e-61
2plj_A419 Crystal Structure Of LysineORNITHINE DECARBOXYLASE 6e-44
3c5q_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-22
2qgh_A425 Crystal Structure Of Diaminopimelate Decarboxylase 3e-22
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 2e-19
3n2b_A441 1.8 Angstrom Resolution Crystal Structure Of Diamin 2e-16
2yxx_A386 Crystal Structure Analysis Of Diaminopimelate Decar 1e-13
3vab_A443 Crystal Structure Of Diaminopimelate Decarboxylase 1e-12
1twi_A434 Crystal Structure Of Diaminopimelate Decarboxylase 4e-11
1tuf_A434 Crystal Structure Of Diaminopimelate Decarboxylase 2e-10
2j66_A428 Structural Characterisation Of Btrk Decarboxylase F 4e-08
1knw_A425 Crystal Structure Of Diaminopimelate Decarboxylase 5e-08
3nzp_A 619 Crystal Structure Of The Biosynthetic Arginine Deca 8e-08
3nzq_A 666 Crystal Structure Of Biosynthetic Arginine Decarbox 1e-06
1hkv_A453 Mycobacterium Diaminopimelate Dicarboxylase (Lysa) 1e-04
2o0t_A467 The Three Dimensional Structure Of Diaminopimelate 3e-04
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  287 bits (735), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/392 (40%), Positives = 232/392 (59%), Gaps = 39/392 (9%)
Query: 51  EPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQA 110
           +PF+V DLG ++  +      LP V P+YAVKCN +  +L TLAALG+ FDCAS +EIQ 
Sbjct: 38  DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 111 VLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKS 170
           V  + V P++IIYAN CK +SHI+YA   GV++ TFD + EL+K+ K HPK ++++RI S
Sbjct: 98  VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-S 156
Query: 171 PVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAK 230
             D  AR  L  KFGA  E+   +L  A+   + V GV+FH+GS +T+   F  AI++++
Sbjct: 157 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 231 TVFETAARLGMTKMRVLDIGGGFACNPG-------FHEAASIIKDAIQTYFPNETAAGHL 283
            VF+    LG   M +LDIGGGF   PG       F E A +I +A++ +FP +     L
Sbjct: 217 FVFDMGTELGFN-MHILDIGGGF---PGTRDAPLKFEEIAGVINNALEKHFPPDL---KL 269
Query: 284 SVISEPGRFLADTAFTLATKVIGKRVRDELRE--------------YWINDGKYGSFGWL 329
           ++++EPGR+   +AFTLA  VI K+V   ++               Y++NDG YGSF  +
Sbjct: 270 TIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCI 329
Query: 330 SSEEVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDM 389
             +  + +    +       N + Y S+V+GPTC  +D++   + LPE++V +WL+F DM
Sbjct: 330 LYDHAVVR---PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDM 386
Query: 390 GAYTTACGTNFNGFNTAAI-------PTYVVR 414
           GAYT    ++FNGF +  I       P +VVR
Sbjct: 387 GAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 418
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Bound To Agmatine Length = 372 Back     alignment and structure
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Length = 372 Back     alignment and structure
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From Entamoeba Histolytica. Length = 395 Back     alignment and structure
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine Decarboxylase Homologous Protein Length = 448 Back     alignment and structure
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE COMPLEXED WITH Putrescine From Vibrio Vulnificus Length = 419 Back     alignment and structure
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l Mutant) From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. Length = 441 Back     alignment and structure
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate Decarboxylate (Lysa) Length = 386 Back     alignment and structure
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Brucella Melitensis Bound To Plp Length = 443 Back     alignment and structure
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschii In Co-Complex With L-Lysine Length = 434 Back     alignment and structure
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschi Length = 434 Back     alignment and structure
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From Butirosin Biosynthesis Length = 428 Back     alignment and structure
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase Length = 425 Back     alignment and structure
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine Decarboxylase Spea From Campylobacter Jejuni, Northeast Structural Genomics Consortium Target Br53 Length = 619 Back     alignment and structure
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase Adc (Spea) From Escherichia Coli, Northeast Structural Genomics Consortium Target Er600 Length = 666 Back     alignment and structure
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa) Length = 453 Back     alignment and structure
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate Decarboxylase From Mycobacterium Tuberculosis Reveals A Tetrameric Enzyme Organisation Length = 467 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 1e-161
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 1e-158
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 1e-156
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 1e-155
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-155
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 1e-155
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 4e-41
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 4e-41
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 2e-40
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 1e-37
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 3e-37
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 6e-37
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 8e-37
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 4e-36
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 2e-34
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 2e-33
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 4e-33
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 8e-32
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 2e-31
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 4e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
 Score =  458 bits (1182), Expect = e-161
 Identities = 142/381 (37%), Positives = 208/381 (54%), Gaps = 15/381 (3%)

Query: 37  EFMESIILKRQELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAAL 96
             + +I+       + FYV    +V  L  Q     P V P+YAVKCN +  +L+T+   
Sbjct: 3   SVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDK 62

Query: 97  GSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIR 156
             NFDCAS SEI+ V+ + VSP RII+A+  K +  + +A   GV++ TFDS  ELDKI 
Sbjct: 63  NVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIH 122

Query: 157 KWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEA 216
            +HP C++++RI+      A   L +KFGAN +E+ HLL  A+   + VIG++FH+GS +
Sbjct: 123 TYHPNCKMILRIRCDDP-NATVQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHVGSGS 181

Query: 217 TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGF----ACNPGFHEAASIIKDAIQT 272
            N +A++ AI  +K  F  A  +G  K  +LDIGGG              +  I DAI+ 
Sbjct: 182 RNPEAYYRAIKSSKEAFNEAISVGH-KPYILDIGGGLHADIDEGELSTYMSDYINDAIKD 240

Query: 273 YFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRDELREYWINDGKYGSFGWLSSE 332
           +FP +     +++++EPGRF A+    LAT+VIGKRVRD L EY+ N+  YG F  +  E
Sbjct: 241 FFPED----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFE 296

Query: 333 EVIAKCGAHILASASHSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAY 392
           + +       L      +     S ++G TC  VD +     LPEL + DW+ F   GAY
Sbjct: 297 KSVP---TPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAY 353

Query: 393 TTACGTNFNGFNTAAIPTYVV 413
           T    T+FNGF    +  Y +
Sbjct: 354 TNVLTTSFNGFGEYDV--YYI 372
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 100.0
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3n2o_A648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
3co8_A380 Alanine racemase; protein structure initiative II, 100.0
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 100.0
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 99.98
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 99.98
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.97
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.96
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.96
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.96
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.96
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.95
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.93
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.92
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.85
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.74
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 99.66
3r79_A244 Uncharacterized protein; PSI-biology, structural g 99.61
2x7v_A287 Probable endonuclease 4; DNA repair protein, metal 82.58
3qc0_A275 Sugar isomerase; TIM barrel, structural genomics, 82.11
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 80.56
1qtw_A285 Endonuclease IV; DNA repair enzyme, TIM barrel, tr 80.45
1ur4_A399 Galactanase; hydrolase, beta-1, glycoside hydrolas 80.28
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 80.26
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 80.09
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
Probab=100.00  E-value=6.2e-70  Score=550.82  Aligned_cols=378  Identities=40%  Similarity=0.709  Sum_probs=324.2

Q ss_pred             ceeeecCCCCHHHHHHHHHhhcC--CCCCcEEEEeHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEE
Q 045356           25 RVPTITKDGGLLEFMESIILKRQ--ELDEPFYVLDLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDC  102 (419)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~--~~~tP~~v~d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~V  102 (419)
                      .+..++...++.++++++|.+..  ..+||+|+||+++|++|++++++.+|+++++|++|||+++.|++++.+.|+||+|
T Consensus        10 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~tP~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dv   89 (424)
T 7odc_A           10 DCHILDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDC   89 (424)
T ss_dssp             EEEEECSSCCHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEE
T ss_pred             cEEEecCCCCHHHHHHHHHhhcccCCCCCcEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcEEE
Confidence            45567778889999999987652  3699999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHHHHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCC
Q 045356          103 ASPSEIQAVLALSVSPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDS  182 (419)
Q Consensus       103 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~s  182 (419)
                      +|.+|++.++++|+++++|+|+||.|++++++.|+++|+..+++||++|++++.+.++..+++|||+++... .....++
T Consensus        90 aS~~E~~~~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~~-~~~~~~s  168 (424)
T 7odc_A           90 ASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSK-AVCRLSV  168 (424)
T ss_dssp             CSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC------------
T ss_pred             CCHHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCCC-CCCCCCC
Confidence            999999999999999889999999999999999999999767999999999999999999999999996421 1223359


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCCC----CC
Q 045356          183 KFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFACN----PG  258 (419)
Q Consensus       183 RfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~~----~~  258 (419)
                      |||++++++.++++.+++.++++.|||+|+||++.+.+.+.++++++.++++.+++.| .++++||+||||+..    ++
T Consensus       169 kfG~~~~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G-~~~~~ldiGGG~~~~~~~~~~  247 (424)
T 7odc_A          169 KFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVG-FSMHLLDIGGGFPGSEDTKLK  247 (424)
T ss_dssp             CCCBCHHHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHT-CCCCEEECCCCCCCSSSSSSC
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCEEEeCCCcCCCCCCCCC
Confidence            9999999999999988878999999999999999899999999999999999899999 899999999999973    47


Q ss_pred             HHHHHHHHHHHHHhhCCCccCCCccEEEEcCcchhcccceEEEEEEEEEEEeC--------------CceEEEEecCCCC
Q 045356          259 FHEAASIIKDAIQTYFPNETAAGHLSVISEPGRFLADTAFTLATKVIGKRVRD--------------ELREYWINDGKYG  324 (419)
Q Consensus       259 ~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~lv~~a~~lvt~V~~~k~~~--------------~~~~~~i~dg~~~  324 (419)
                      ++++++.|++.+.++++...   .++|++|||||++++||+|+|+|+++|...              ...+|++++|+|+
T Consensus       248 ~~~~a~~i~~~~~~~~~~~~---~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~  324 (424)
T 7odc_A          248 FEEITSVINPALDKYFPSDS---GVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYG  324 (424)
T ss_dssp             HHHHHHHHHHHHHHHSCGGG---TCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTT
T ss_pred             HHHHHHHHHHHHHHHhcccC---CcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCC
Confidence            99999999999999987432   389999999999999999999999999742              1356889999999


Q ss_pred             CcchhhhHHHHhhcceeeecccC-CCCCCceeeEEeccCCCCCCccccCCCCCCCCCCCEEEEcCCCcccccCCCCCCCC
Q 045356          325 SFGWLSSEEVIAKCGAHILASAS-HSNNRTYRSTVFGPTCAAVDKVFTGHQLPELEVSDWLVFSDMGAYTTACGTNFNGF  403 (419)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~lv~~~~GAY~~~~~~~fng~  403 (419)
                      ++++.+|....    ..|+.... ......++++|+||+|+++|+|.+++.||++++||+|+|.++|||+++|+|+|||+
T Consensus       325 ~~~~~ly~~~~----~~p~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fN~~  400 (424)
T 7odc_A          325 SFNCILYDHAH----VKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGF  400 (424)
T ss_dssp             TTHHHHHSCCC----CCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGC
T ss_pred             ChhhHhhccCc----cceeeecCCCCCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCCCCC
Confidence            99888772211    22322211 12234578999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccEE
Q 045356          404 NTAAIPTY  411 (419)
Q Consensus       404 ~~~~~~~~  411 (419)
                      ++|.++.+
T Consensus       401 ~~p~~v~~  408 (424)
T 7odc_A          401 QRPNIYYV  408 (424)
T ss_dssp             CCCEEEEE
T ss_pred             CCCeEEEE
Confidence            99987433
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Back     alignment and structure
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-40
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-37
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 5e-30
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 4e-26
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 1e-25
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 2e-21
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 2e-20
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 2e-13
d1twia1170 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decar 2e-07
d1hkva1181 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarb 4e-06
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  142 bits (358), Expect = 1e-40
 Identities = 110/245 (44%), Positives = 153/245 (62%), Gaps = 9/245 (3%)

Query: 57  DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSV 116
           DLG ++  + + +  LP V P+YAVKCN   AI+ TLAA+G+ FDCAS +EIQ V  L V
Sbjct: 1   DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60

Query: 117 SPDRIIYANACKPVSHIKYAASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGA 176
             +R+IYAN CK VS IKYAAS GV + TFDS  EL K+ + HPK +L++RI    D  A
Sbjct: 61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIA-TDDSKA 119

Query: 177 RYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEATNLDAFHAAIAEAKTVFETA 236
              L  KFGA  +    LL  A+   + VIGV+FH+GS  T+ D F  A+++A+ VF+ A
Sbjct: 120 VCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMA 179

Query: 237 ARLGMTKMRVLDIGGGFACN----PGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRF 292
             +G + M +LDIGGGF  +      F E  S+I  A+  YFP+++    + +I+EPGR+
Sbjct: 180 TEVGFS-MHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDS---GVRIIAEPGRY 235

Query: 293 LADTA 297
              +A
Sbjct: 236 YVASA 240
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 170 Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.94
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.92
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.88
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.87
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.86
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.84
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.79
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.79
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 98.71
d1rcqa1131 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 98.01
d1vfsa1145 Alanine racemase {Streptomyces lavendulae [TaxId: 97.89
d1bd0a1148 Alanine racemase {Bacillus stearothermophilus [Tax 97.54
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 88.7
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-45  Score=341.59  Aligned_cols=236  Identities=46%  Similarity=0.769  Sum_probs=212.3

Q ss_pred             eHHHHHHHHHHHHHhCCCCceeeeeccCCcHHHHHHHHHcCCcEEEcCHHHHHHHHHCCCCCCcEEEcCCCCCHHHHHHH
Q 045356           57 DLGVVISLYHQLISNLPMVHPYYAVKCNPEPAILETLAALGSNFDCASPSEIQAVLALSVSPDRIIYANACKPVSHIKYA  136 (419)
Q Consensus        57 d~~~l~~ni~~~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~VaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~l~~a  136 (419)
                      |++.|.+++++|++.+|+++++|++|||+++.|++++.+.|+|+||+|.+|++.++++|+++++|+|+||.|++++|+.|
T Consensus         1 dl~~i~~~~~~~~~~~p~v~~~YA~KaN~~~~il~~l~~~G~g~dv~S~~El~~a~~aG~~~~~Iv~~g~~K~~~~l~~a   80 (240)
T d7odca2           1 DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYA   80 (240)
T ss_dssp             EHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHcCCCeEeecchHHHHHHhcCCCccceEecCCccchHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEeeCCCC
Q 045356          137 ASVGVNLTTFDSIQELDKIRKWHPKCELLIRIKSPVDGGARYPLDSKFGANPEEVAHLLGAAQASGLAVIGVAFHIGSEA  216 (419)
Q Consensus       137 ~~~gi~~i~vdS~~el~~i~~~~~~~~v~lRv~~~~~~g~~~~~~sRfGi~~ee~~~~l~~~~~~~l~l~Glh~H~gs~~  216 (419)
                      +++|+.++++||+++++.+.+.++..++.+|+++.... ......+|||++.+++.++++.++..++++.|||+|+||+.
T Consensus        81 ~~~g~~~~~~ds~~el~~i~~~~~~~~v~~ri~~~~~~-~~~~~~~kfG~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~  159 (240)
T d7odca2          81 ASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSK-AVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGC  159 (240)
T ss_dssp             HHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC------------CCCBCHHHHHHHHHHHHHTTCEEEEEECCCCSSC
T ss_pred             HHhhcccccchhHHHHHHHHHhcccccccccccccccc-cccCcCccccccHHHHHHHHHHhhhcCceEEeecccccccc
Confidence            99999888999999999999999999999999986532 11223589999999999998888888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCCCC----CCCHHHHHHHHHHHHHhhCCCccCCCccEEEEcCcch
Q 045356          217 TNLDAFHAAIAEAKTVFETAARLGMTKMRVLDIGGGFAC----NPGFHEAASIIKDAIQTYFPNETAAGHLSVISEPGRF  292 (419)
Q Consensus       217 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ldiGGG~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~li~EpGR~  292 (419)
                      .+.+.|.+.++.+..+++.+++.| +++++||+||||++    +++++++++.+++.+.++++...   .++|++|||||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~l~~EPGR~  235 (240)
T d7odca2         160 TDPDTFVQAVSDARCVFDMATEVG-FSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDS---GVRIIAEPGRY  235 (240)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHT-CCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGG---TCEEEECCSHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhC-CCeeEEEeCCCcCCCCCCCCCHHHHHHHHHHHHHHhcccCC---CCEEEEeCcHH
Confidence            999999999999888999888999 89999999999997    35788999999999999987543   38999999999


Q ss_pred             hcccc
Q 045356          293 LADTA  297 (419)
Q Consensus       293 lv~~a  297 (419)
                      ++++|
T Consensus       236 lvA~A  240 (240)
T d7odca2         236 YVASA  240 (240)
T ss_dssp             HHGGG
T ss_pred             HhcCC
Confidence            99986
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure