Citrus Sinensis ID: 045364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHcccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccEEEcHHHHHHHHHHHHHHHHccccHHHHcccEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEEcc
Coil and Loop (DISEMBL)
mivevfldpnkelpmddpiiLTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVlfnaldls
Flexible Loop (DISEMBL)
MIVEVFLdpnkelpmddPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Low Complexity Region (SEG)
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Disordered region (IsUnstruct)
*****FL*****LPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNAL***
Disordered Region (DISOPRED)
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Disordered Region (DISEMBL)
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Disordered Region (DISPRO)
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q6AWV1	151	Probable ribonuclease P/M	yes	no	1.0	0.642	0.653	1e-30
Q9UU90	139	Ribonucleases P/MRP prote	yes	no	0.855	0.597	0.258	0.0006

>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 82/98 (83%), Gaps = 1/98 (1%)

Query: 1   MIVEVFLDPNKELPMDD-PIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPIT 59
           M++EVFLDP+K+L  +  PIILTQFN  KAI+D+ILVNF ECGL SSL SFQVKYVNPIT
Sbjct: 9   MLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPIT 68

Query: 60  KLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           KLCI+++S ++ ++VW  IT+V+SIGNC V+ N LD+S
Sbjct: 69  KLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 13  LPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQ 72
           +P D  I  +  +  K IR  +  NF + G+     S  VKY +P T   I++ S + F+
Sbjct: 27  IPSDSSITTSSLS--KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFR 84

Query: 73  KVWSTITMVRSIGNCLVLFNALDLS 97
             W+ + ++R +    V+   + +S
Sbjct: 85  LAWAALVLIRELYGKPVIIRVVRVS 109

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP, which cleaves pre-rRNA sequences.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
224132544	154	predicted protein [Populus trichocarpa]	1.0	0.629	0.762	5e-37
118482082	154	unknown [Populus trichocarpa]	1.0	0.629	0.752	7e-37
224135587	154	predicted protein [Populus trichocarpa]	1.0	0.629	0.762	7e-37
225455163	154	PREDICTED: probable ribonuclease P/MRP p	1.0	0.629	0.752	5e-36
224132540	154	predicted protein [Populus trichocarpa]	1.0	0.629	0.752	1e-35
255544312	144	lipoate-protein ligase B, putative [Rici	0.979	0.659	0.736	3e-35
449443879	154	PREDICTED: probable ribonuclease P/MRP p	1.0	0.629	0.690	6e-33
356500813	154	PREDICTED: probable ribonuclease P/MRP p	1.0	0.629	0.680	3e-32
351727563	154	uncharacterized protein LOC100527772 [Gl	1.0	0.629	0.659	3e-31
357490389	153	hypothetical protein MTR_5g068650 [Medic	1.0	0.633	0.649	1e-30

>gi|224132544|ref|XP_002321344.1| predicted protein [Populus trichocarpa] gi|222868340|gb|EEF05471.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 87/97 (89%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFLDPN++L +DDPII+TQ+N  KAI+D+ILVNF ECGLASSL SFQVKYVNPITK
Sbjct: 9   MVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           LCII+TS +++QKVWS ITMVR IGNC VLFN LDLS
Sbjct: 69  LCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLS 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482082|gb|ABK92972.1| unknown [Populus trichocarpa]

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 87/97 (89%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFLDPN++L +DDPI++TQ+N  KAI+D+ILVNF ECGLASSL SFQVKYVNPITK
Sbjct: 9   MVMEVFLDPNRDLGVDDPIVITQYNVSKAIKDSILVNFGECGLASSLGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           LCII+TS +++QKVWS ITMVR IGNC VLFN LDLS
Sbjct: 69  LCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLS 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135587|ref|XP_002327255.1| predicted protein [Populus trichocarpa] gi|222835625|gb|EEE74060.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 87/97 (89%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFLDPN++L +DDPII+TQ+N  KAI+D+ILVNF ECGLASSL SFQVKYVNPITK
Sbjct: 9   MVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           LCII+TS +++QKVWS ITMVR IGNC VLFN LDLS
Sbjct: 69  LCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLS 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455163|ref|XP_002268478.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera] gi|302144009|emb|CBI23114.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 86/97 (88%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           MI+EVFLDPN++L +DDPII+TQFN  KAI+D+ILVNF ECGLASS  SFQVKYVNPITK
Sbjct: 9   MIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           LCII+ S +++QKVWS ITMV+SIG+C VLFN LDLS
Sbjct: 69  LCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLS 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132540|ref|XP_002321342.1| predicted protein [Populus trichocarpa] gi|222868338|gb|EEF05469.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 86/97 (88%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFLDPN++L +DDPII+TQ+N  KAI+D+ILVNF ECGLASSL SFQVKYVNPITK
Sbjct: 9   MVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFRECGLASSLGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           L II+TS +++QKVWS ITMVR IGNC VLFN LDLS
Sbjct: 69  LYIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLS 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544312|ref|XP_002513218.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223547716|gb|EEF49209.1| lipoate-protein ligase B, putative [Ricinus communis]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 84/95 (88%)

Query: 3  VEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLC 62
          +E+FLDPN++L  DDPII+TQFN  KAI+++ILVN+ ECGLASSL SFQVKYVNPITKLC
Sbjct: 1  MEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQVKYVNPITKLC 60

Query: 63 IIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
          II+ S +++QKVWS +TMVRSIGNC VLFN LDLS
Sbjct: 61 IIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLS 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443879|ref|XP_004139703.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus] gi|449517176|ref|XP_004165622.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 81/97 (83%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M+ EV LDPNK+L  DDPII+TQ+N  KAI+D+IL+NF ECG AS+L SFQVKYVNPITK
Sbjct: 9   MVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQVKYVNPITK 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           +CII+ S +D+Q VW+ ITMVRSI NC V+FN LDLS
Sbjct: 69  VCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLS 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500813|ref|XP_003519225.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Glycine max]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 81/97 (83%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFL+PN++   DD +I+TQFN  KA+RD+ILVNF ECGLASSL SFQVKYVNPIT 
Sbjct: 9   MVMEVFLNPNRDKGGDDSVIVTQFNVSKAVRDSILVNFGECGLASSLGSFQVKYVNPITN 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           +CII+ S + +QKVWS ITMV +IGNC V+FN LDLS
Sbjct: 69  VCIIRASREQYQKVWSAITMVTNIGNCPVMFNLLDLS 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727563|ref|NP_001237165.1| uncharacterized protein LOC100527772 [Glycine max] gi|255633176|gb|ACU16944.1| unknown [Glycine max]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 81/97 (83%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVFL+PN++   D  +I+TQFN  KA+RD+ILVNF ECGLASSL SFQVKYVNPIT 
Sbjct: 9   MVMEVFLNPNRDKVGDASVIITQFNVSKAVRDSILVNFGECGLASSLGSFQVKYVNPITN 68

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           +CII+ S +++QKVW+ ITMV +IGNC V+FN LDLS
Sbjct: 69  VCIIRASREEYQKVWAAITMVTNIGNCPVMFNLLDLS 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490389|ref|XP_003615482.1| hypothetical protein MTR_5g068650 [Medicago truncatula] gi|355516817|gb|AES98440.1| hypothetical protein MTR_5g068650 [Medicago truncatula]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 81/97 (83%)

Query: 1   MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITK 60
           M++EVF++PNK+    D II+TQFN   AI+D+ILVNF ECGLA+SL SFQVKYVNPIT 
Sbjct: 8   MVMEVFMNPNKDQAAGDSIIITQFNVSNAIKDSILVNFGECGLAASLGSFQVKYVNPITN 67

Query: 61  LCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
           +CII+ S ++++KVW++ITMVRSIGN  V+FN LDLS
Sbjct: 68  VCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLS 104

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:504956160	151	EMB1687 "AT1G04635" [Arabidops	1.0	0.642	0.653	1e-29
POMBASE|SPCC830.09c	139	SPCC830.09c "RNase P and RNase	0.855	0.597	0.258	1.9e-05
ASPGD|ASPL0000046823	214	AN2437 [Emericella nidulans (t	0.587	0.266	0.245	0.0005

TAIR|locus:504956160 EMB1687 "AT1G04635" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 64/98 (65%), Positives = 82/98 (83%)

Query:     1 MIVEVFLDPNKELPMDD-PIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPIT 59
             M++EVFLDP+K+L  +  PIILTQFN  KAI+D+ILVNF ECGL SSL SFQVKYVNPIT
Sbjct:     9 MLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPIT 68

Query:    60 KLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS 97
             KLCI+++S ++ ++VW  IT+V+SIGNC V+ N LD+S
Sbjct:    69 KLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDIS 106

GO:0004526 "ribonuclease P activity" evidence=ISS

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005773 "vacuole" evidence=IDA

POMBASE|SPCC830.09c SPCC830.09c "RNase P and RNase MRP subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query:    13 LPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQ 72
             +P D  I  +  +  K IR  +  NF + G+     S  VKY +P T   I++ S + F+
Sbjct:    27 IPSDSSITTSSLS--KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFR 84

Query:    73 KVWSTITMVRSIGNCLVLFNALDLS 97
               W+ + ++R +    V+   + +S
Sbjct:    85 LAWAALVLIRELYGKPVIIRVVRVS 109

GO:0000172 "ribonuclease MRP complex" evidence=ISO

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008033 "tRNA processing" evidence=ISO

GO:0000171 "ribonuclease MRP activity" evidence=ISO

GO:0004526 "ribonuclease P activity" evidence=ISO

ASPGD|ASPL0000046823 AN2437 [Emericella nidulans (taxid:162425)]

 Score = 72 (30.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query:    28 KAIRDNILVNFSECGLAS----SLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRS 83
             K +RD +   F + G+            VKY++P T   II+     ++ VW+ +T +  
Sbjct:    56 KMVRDEVAKMFGDWGIGRLGGVGAGGVSVKYLSPATSTAIIRCPRASYRLVWTALTYISH 115

Query:    84 I 84
             +
Sbjct:   116 V 116

GO:0034965 "intronic box C/D snoRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0000171 "ribonuclease MRP activity" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWV1	POP5_ARATH	3, ., 1, ., 2, 6, ., 5	0.6530	1.0	0.6423	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
pfam01900	103	pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family	7e-17

>gnl|CDD|216773 pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family

 Score = 68.7 bits (169), Expect = 7e-17
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query: 16 DDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVW 75
          +DP  L++ + LKAIR+ +   F + G A +  S  VKY NP T   I++      + VW
Sbjct: 10 EDPSSLSRKDLLKAIREAVKELFGDFGAAKAGPSLIVKYFNPKTGTGILRCRRGYVRLVW 69

Query: 76 STITMVRSIGNCLVLFNALDLS 97
          + +T++ SIG   V+   L +S
Sbjct: 70 AALTLITSIGGKPVIIRVLGVS 91

tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
PF01900	107	RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002	99.96
PRK03717	120	ribonuclease P protein component 2; Provisional	99.95
KOG4639	154	consensus RNase P/RNase MRP subunit POP5 [Translat	99.94
COG1369	124	POP5 RNase P/RNase MRP subunit POP5 [Translation,	99.83

>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P

Probab=99.96  E-value=5.3e-30  Score=166.29  Aligned_cols=92  Identities=33%  Similarity=0.502  Sum_probs=76.1

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      |+|||+++|+.     .+..++++++.++|+++++++|||+|+|.+..++.|+|||+.|+.+||||+|++++++|+|||+
T Consensus         3 i~~~i~~~~~~-----~~~~~~~~~l~~~I~~a~~~l~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~r~~~~~v~~aL~~   77 (107)
T PF01900_consen    3 IVFEIISEDPS-----DPAELSPSDLKKAIREAVKELFGDFGAAAISPSLQVKYFNPKTGIGIIRCRREYYKKVWSALTL   77 (107)
T ss_dssp             EEEEEEES----------S---HHHHHHHHHHHHHHHCHHHHHHHH--EEE--EEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred             EEEEEEEcccc-----ccCcCCHHHHHHHHHHHHHHHcChhhhhhcccccceeeEcCCCCEEEEEEcchhhhHHHHHHHH
Confidence            58999999976     3567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      +++++|.||.|+|++||
T Consensus        78 i~~i~~~~~~~~vl~vS   94 (107)
T PF01900_consen   78 ITSINGRPCSIRVLHVS   94 (107)
T ss_dssp             --EETTEEEEEEEEEEE
T ss_pred             HhccCCceEEEEEEEEC
Confidence            99999999999999997

This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.

>PRK03717 ribonuclease P protein component 2; Provisional

Probab=99.95  E-value=1.8e-27  Score=159.05  Aligned_cols=85  Identities=20%  Similarity=0.210  Sum_probs=79.2

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      |+|||++++          ++++++|.++||++++++|||+|+|.+.  +++.|||+.|+.+||||.|++++.+|+||++
T Consensus        19 i~~ei~~~~----------~~~~~~l~~~Ir~av~~~fGd~G~~~~~--~~li~f~~~t~~gIlRc~R~~~~~v~aAL~l   86 (120)
T PRK03717         19 IAFQVIGER----------PFTKDEIKKAIWEASLSTLGELGTARAK--PWFIKFDEKTQTGIVRCDRKHVEELRFALTL   86 (120)
T ss_pred             EEEEEEeCC----------CCCHHHHHHHHHHHHHHHcChhhhcccc--ceEEEEeCCCCEEEEEcCchhHHHHHHHHHH
Confidence            589999854          2689999999999999999999999975  6778999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      |++++|.||.|++++||
T Consensus        87 i~~i~~~~v~ir~l~vS  103 (120)
T PRK03717         87 VTEINGSKAIIRTLGVS  103 (120)
T ss_pred             HHhCCCeeEEEEEeecc
Confidence            99999999999999998

>KOG4639 consensus RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=3.2e-27  Score=161.54  Aligned_cols=92  Identities=23%  Similarity=0.434  Sum_probs=86.3

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      +|||+++++..     .+..++.+.|...+|+.+.++|||||+|.+.++|.|||+|+.|+++||||.|+.++.+|+||++
T Consensus         9 ilvel~~~~p~-----~~~~~~~siL~~iir~~v~~~~Gd~G~a~~~s~l~VkYl~~~T~v~ilRc~~~~~k~v~~aLpl   83 (154)
T KOG4639|consen    9 ILVELLFPDPP-----PDLSLKDSILQSIIRSRVSENYGDFGLAKVKSLLSVKYLNENTSVAILRCAREGCKLVWAALPL   83 (154)
T ss_pred             EEEEEecCCCC-----CCCCcchHHHHHHHHHHHHHHhhhHHHHHhhcceEEEEeCCCCcEEEEEEccccchhHHHHHhH
Confidence            58999999543     4567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      |+++++.||.|++|+||
T Consensus        84 I~~i~d~~~~~~tl~Vg  100 (154)
T KOG4639|consen   84 ITKIGDVPCIFRTLFVG  100 (154)
T ss_pred             HHhhcCcceEEEEEEEh
Confidence            99999999999999997

>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.6e-20  Score=123.41  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             cccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHhhhhcCCeeeEEEEEeeC
Q 045364           19 IILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGNCLVLFNALDLS   97 (97)
Q Consensus        19 ~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtlit~i~~~~~~~rvl~vS   97 (97)
                      ..++.+++.++||+++.++|||+|+|.+  ++++.+|++.|+.+||||.|++++.+|+||+++++++|.|+.+++++||
T Consensus        27 ~~i~~~~l~~~I~~s~l~llG~~gta~~--~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~~~~g~rv~I~~lgvS  103 (124)
T COG1369          27 EEITRGELVRLIRRSLLSLLGDVGTAKA--NPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAREVNGKRVIIVVLGVS  103 (124)
T ss_pred             ccCChhHHHHHHHHHHHHHcCccccccc--ceeEEEEeccCCceEEEEechhHHHHHHHHHHHHHhCCceEEEEEeecc
Confidence            3579999999999999999999999986  5888888888999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	4e-15
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	8e-15

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1 Length = 120

 Score = 64.4 bits (157), Expect = 4e-15
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 27  LKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITMVRSIGN 86
            +AI +  L    E G A +     +   +  T+  II++       V  ++T+V  I  
Sbjct: 35  KEAIWNACLRTLGELGTAKA--KPWLIKFDETTQTGIIRSDRNHVYDVIFSLTLVSDING 92

Query: 87  CLVLFNALDLS 97
              +   L +S
Sbjct: 93  NKAIIKVLGVS 103

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1 Length = 120

 Score = 63.6 bits (155), Expect = 8e-15
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 12  ELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDF 71
           E+  D      +    + I  + L    E G A       +   +P TK  I+++  +  
Sbjct: 22  EIISDGDFTKDEV--KELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYV 77

Query: 72  QKVWSTITMVRSIGNCLVLFNALDLS 97
           + +   + +V       ++   L +S
Sbjct: 78  EYLRFALMLVSEFNGKRLIIRTLGVS 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	99.96
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	99.96

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1

Probab=99.96  E-value=4.9e-30  Score=170.01  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      |+|||+++|          .+|++++.++|+++++++|||+|+|.+  +++|+|||+.|+++||||+|++++.+|+|||+
T Consensus        19 ll~ei~~~~----------~l~~~~l~~~I~~av~~~fGd~G~~~~--~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtl   86 (120)
T 2czv_C           19 IAFEIISDG----------DFTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVEYLRFALML   86 (120)
T ss_dssp             EEEEEECSS----------CCCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred             EEEEEEECC----------CCCHHHHHHHHHHHHHHhcCcchhhcc--CceEEEEcCCCCEEEEEeCchhHHHHHHHHHh
Confidence            589999886          279999999999999999999999997  59999999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      +++++|.||.|+|++||
T Consensus        87 i~~i~~~~~~~~vl~vS  103 (120)
T 2czv_C           87 VSEFNGKRLIIRTLGVS  103 (120)
T ss_dssp             CCEETTEECEEEEEEEE
T ss_pred             HhhCCCEEEEEEEeEEC
Confidence            99999999999999997

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1

Probab=99.96  E-value=9.1e-30  Score=168.62  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      |+|||++++          .+|++++.++|+++++++|||+|+|.+.  ++|+|||+.|+++||||+|++++.+|+|||+
T Consensus        19 ll~ei~~~~----------~l~~~~l~~~I~~av~~~fGd~G~~~~~--~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtl   86 (120)
T 2av5_A           19 IAFKVISEN----------QFNKDEIKEAIWNACLRTLGELGTAKAK--PWLIKFDETTQTGIIRSDRNHVYDVIFSLTL   86 (120)
T ss_dssp             EEEEEEESS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred             EEEEEEECC----------CCCHHHHHHHHHHHHHHhCCcccccccC--ccEEEEcCCCCEEEEEeCchhHHHHHHHHHH
Confidence            589999986          2799999999999999999999999974  8899999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      +++++|.||.|+|++||
T Consensus        87 i~~i~~~~~~~~vl~vS  103 (120)
T 2av5_A           87 VSDINGNKAIIKVLGVS  103 (120)
T ss_dssp             CCEETTEEEEEEEEEEE
T ss_pred             HhhCCCEEEEEEEeEEc
Confidence            99999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d2av5a1	106	d.58.59.1 (A:15-120) RNase P protein component 2,	1e-15
d2czvc1	118	d.58.59.1 (C:3-120) RNase P protein component 2, R	1e-15

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 21 LTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM 80
            +    +AI +  L    E G A +     +   +  T+  II++       V  ++T+
Sbjct: 15 FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFDETTQTGIIRSDRNHVYDVIFSLTL 72

Query: 81 VRSIGNCLVLFNALDLS 97
          V  I     +   L +S
Sbjct: 73 VSDINGNKAIIKVLGVS 89

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.4 bits (157), Expect = 1e-15
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 21  LTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM 80
            T+    + I  + L    E G A       +   +P TK  I+++  +  + +   + +
Sbjct: 27  FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVEYLRFALML 84

Query: 81  VRSIGNCLVLFNALDLS 97
           V       ++   L +S
Sbjct: 85  VSEFNGKRLIIRTLGVS 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d2av5a1	106	RNase P protein component 2, Rnp2 {Pyrococcus furi	99.96
d2czvc1	118	RNase P protein component 2, Rnp2 {Pyrococcus hori	99.96

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=1.9e-30  Score=167.17  Aligned_cols=85  Identities=19%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      ++|||++++          ++++++|.++|+++++++|||+|+|..  +++|+||||.|+++||||+|++++++|+|||+
T Consensus         5 i~~~i~~~~----------~l~~~~l~~~Ir~~v~~lfGd~G~~~~--~l~v~y~~~~t~~~IlR~~r~~~~~v~aaL~l   72 (106)
T d2av5a1           5 IAFKVISEN----------QFNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFDETTQTGIIRSDRNHVYDVIFSLTL   72 (106)
T ss_dssp             EEEEEEESS----------CCCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred             EEEEEEECC----------CCCHHHHHHHHHHHHHHhcChhhhccC--CceEEEEeCCCCEEEEEeccHhHHHHHHHHHH
Confidence            589998764          379999999999999999999999974  79999999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      +++++|.||.|+|++||
T Consensus        73 i~~i~~~~~~~~vl~vS   89 (106)
T d2av5a1          73 VSDINGNKAIIKVLGVS   89 (106)
T ss_dssp             CCEETTEEEEEEEEEEE
T ss_pred             HHhcCCEEEEEEEEEee
Confidence            99999999999999997

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=1.3e-29  Score=165.88  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=79.4

Q ss_pred             CEEEEEeCCCCCCCCCCCcccCHHHHHHHHHHHHHhhcCcccccccCCceeEEEeCCCCceEEEEeCCCChhhhHhHHHh
Q 045364            1 MIVEVFLDPNKELPMDDPIILTQFNELKAIRDNILVNFSECGLASSLRSFQVKYVNPITKLCIIKTSMKDFQKVWSTITM   80 (97)
Q Consensus         1 ~l~ei~~~~~~~~~~~~~~~l~~~~l~~aI~~~v~~lfGd~G~~~~~~~l~Vky~~~~t~~~IlRc~r~~~~~v~saLtl   80 (97)
                      ++|||++++          ++++++|.++|+++++++|||+|+|.+  +++|+||||.|+++||||+|++++++|||||+
T Consensus        17 il~~i~~~~----------~~~~~~l~~~I~~~v~~lfGd~G~~~~--~~~v~y~~~~t~~~IiR~~r~~~~~v~aaL~l   84 (118)
T d2czvc1          17 IAFEIISDG----------DFTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVEYLRFALML   84 (118)
T ss_dssp             EEEEEECSS----------CCCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHHHHHT
T ss_pred             EEEEEEeCC----------CCCHHHHHHHHHHHHHHhCCccceeee--ceeEEEEcCCCCEEEEEecchhHHHHHHHHHH
Confidence            578987654          368999999999999999999999975  69999999999999999999999999999999


Q ss_pred             hhhcCCeeeEEEEEeeC
Q 045364           81 VRSIGNCLVLFNALDLS   97 (97)
Q Consensus        81 it~i~~~~~~~rvl~vS   97 (97)
                      +++++|.||.|+|++||
T Consensus        85 i~~i~~~~~~i~vl~vS  101 (118)
T d2czvc1          85 VSEFNGKRLIIRTLGVS  101 (118)
T ss_dssp             CCEETTEECEEEEEEEE
T ss_pred             HhhcCCEeEEEEEEEec
Confidence            99999999999999997