Citrus Sinensis ID: 045366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccEEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEEEccccccccccccccccccccEEccccEEEEccccccccccccccEEEcccccEEcccccccccccccEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHcccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHcccccccccccccEEcccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHHHccccEEEcccccccccccHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
mpncisniCLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWnnsinlcqwtgvtcghrhqrvigldlrhqsirgfLSPFVGYLSFLRSINLVNNslraeiphevgnlfklqnltltnnyfsgkiptnlsrcsnlvkfeasnnklegeiPAEISNLLKFQILNIAKNhlkgqlpasignlsTLQEINVngnrlsgripstrsHVRNLISFNvglnqfsgmfppinnisslEYIFIHKnryhgslpldigvnlpnlRFFIISGnnltgslqdslsnttnlhkldinrn
Flexible Loop (DISEMBL)
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLtgslqdslsnttnlhkldinrn
Low Complexity Region (SEG)
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN
Disordered region (IsUnstruct)
***CISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT*********************
Disordered Region (DISOPRED)
**NCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN
Disordered Region (DISEMBL)
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN
Disordered Region (DISPRO)
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9SD62	1025	Putative receptor-like pr	yes	no	0.955	0.269	0.425	4e-55
C0LGT6	1031	LRR receptor-like serine/	no	no	0.961	0.269	0.410	1e-52
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.896	0.256	0.399	8e-49
Q9FL28	1173	LRR receptor-like serine/	no	no	0.944	0.232	0.319	2e-33
O49318	1124	Probable leucine-rich rep	no	no	0.916	0.235	0.341	2e-31
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.858	0.247	0.329	7e-31
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.906	0.237	0.312	8e-31
O65440	992	Leucine-rich repeat recep	no	no	0.861	0.251	0.320	5e-30
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.913	0.211	0.315	2e-29
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.788	0.212	0.307	3e-29

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 120/282 (42%), Positives = 182/282 (64%), Gaps = 6/282 (2%)

Query: 14  VICCFSLLLTQSLFAQA-----NEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGL 68
           ++C  ++ LT+    QA     ++    S + + SWN+S+ LC WTGV CG +H+RV G+
Sbjct: 27  MVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGV 86

Query: 69  DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP 128
           DL    + G +SPFVG LSFLRS+NL +N     IP EVGNLF+LQ L ++NN F G IP
Sbjct: 87  DLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIP 146

Query: 129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188
             LS CS+L   + S+N LE  +P E  +L K  +L++ +N+L G+ PAS+GNL++LQ +
Sbjct: 147 VVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQML 206

Query: 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF-PPINNISSLEYIFIHKNRYHGSLP 247
           +   N++ G IP   + ++ +I F + LN+F+G+F PPI N+SSL ++ I  N + G+L 
Sbjct: 207 DFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLR 266

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            D G  LPNL+   +  N+ TG++ ++LSN ++L +LDI  N
Sbjct: 267 PDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSN 308

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 180/295 (61%), Gaps = 17/295 (5%)

Query: 12  TLVICCFSLLLTQSLFAQA---NEADRLSLL-------------AMNSWNNSINLCQWTG 55
           +LV    +LLL   +FAQA   NE D  +LL              + SWN+S   C W G
Sbjct: 6   SLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIG 65

Query: 56  VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQN 115
           VTCG R +RVI L+L    + G +SP +G LSFLR +NL +NS  + IP +VG LF+LQ 
Sbjct: 66  VTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQY 125

Query: 116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL 175
           L ++ N   G+IP++LS CS L   + S+N L   +P+E+ +L K  IL+++KN+L G  
Sbjct: 126 LNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNF 185

Query: 176 PASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEY 234
           PAS+GNL++LQ+++   N++ G IP   + +  ++ F + LN FSG FPP + NISSLE 
Sbjct: 186 PASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLES 245

Query: 235 IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           + +  N + G+L  D G  LPNLR  ++  N  TG++  +L+N ++L + DI+ N
Sbjct: 246 LSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSN 300

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  194 bits (492), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 4/263 (1%)

Query: 28  AQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLS 87
           +Q +E  R+    ++SWN+S  LC W GVTCG +++RV  L+L    + G +SP +G LS
Sbjct: 34  SQVSEDKRV---VLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLS 90

Query: 88  FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 147
           FL S++L  N     IP EVG L +L+ L +  NY  G IP  L  CS L+     +N+L
Sbjct: 91  FLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRL 150

Query: 148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVR 207
            G +P+E+ +L     LN+  N+++G+LP S+GNL+ L+++ ++ N L G IPS  + + 
Sbjct: 151 GGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLT 210

Query: 208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN 266
            + S  +  N FSG+FPP + N+SSL+ + I  N + G L  D+G+ LPNL  F + GN 
Sbjct: 211 QIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNY 270

Query: 267 LTGSLQDSLSNTTNLHKLDINRN 289
            TGS+  +LSN + L +L +N N
Sbjct: 271 FTGSIPTTLSNISTLERLGMNEN 293

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 155/316 (49%), Gaps = 43/316 (13%)

Query: 12  TLVICCFSLLLTQSLFAQANEA----------DRLSLLAMNSWNNSINLCQWTGVTC--- 58
           TL    F + L +  F    EA          D L +L+  +   S+  C WTG+TC   
Sbjct: 12  TLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDST 71

Query: 59  GHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTL 118
           GH    V+ + L  + + G LSP +  L++L+ ++L +NS   +IP E+G L +L  L L
Sbjct: 72  GH----VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLIL 127

Query: 119 TNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI----------------------- 155
             NYFSG IP+ +    N+   +  NN L G++P EI                       
Sbjct: 128 YLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC 187

Query: 156 -SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV 214
             +L+  Q+   A NHL G +P SIG L+ L +++++GN+L+G+IP    ++ NL S  +
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVL 247

Query: 215 GLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
             N   G  P  I N SSL  + ++ N+  G +P ++G NL  L+   I  N LT S+  
Sbjct: 248 TENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELG-NLVQLQALRIYKNKLTSSIPS 306

Query: 274 SLSNTTNLHKLDINRN 289
           SL   T L  L ++ N
Sbjct: 307 SLFRLTQLTHLGLSEN 322

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 10/275 (3%)

Query: 24  QSLFAQANEADRLSLLAMNSWNN-SINLCQWTGVTCGHRHQR-------VIGLDLRHQSI 75
           Q L    N   + SL  +++WN      C W GV C  +          V  LDL   ++
Sbjct: 38  QFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNL 97

Query: 76  RGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS 135
            G +SP +G L  L  +NL  N+L  +IP E+GN  KL+ + L NN F G IP  +++ S
Sbjct: 98  SGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLS 157

Query: 136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL 195
            L  F   NNKL G +P EI +L   + L    N+L G LP S+GNL+ L       N  
Sbjct: 158 QLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDF 217

Query: 196 SGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNL 254
           SG IP+      NL    +  N  SG  P  I  +  L+ + + +N++ G +P DIG NL
Sbjct: 218 SGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG-NL 276

Query: 255 PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +L    + GN+L G +   + N  +L KL + +N
Sbjct: 277 TSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQN 311

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 4/252 (1%)

Query: 41  MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100
           + SWN S   C WTGVTC    + V  LDL   ++ G LS  V +L  L++++L  N + 
Sbjct: 47  LTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQIS 106

Query: 101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSR-CSNLVKFEASNNKLEGEIPAEISNLL 159
             IP ++ NL++L++L L+NN F+G  P  LS    NL   +  NN L G++P  ++NL 
Sbjct: 107 GPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLT 166

Query: 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVG-LNQ 218
           + + L++  N+  G++PA+ G    L+ + V+GN L+G+IP    ++  L    +G  N 
Sbjct: 167 QLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNA 226

Query: 219 FSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277
           F    PP I N+S L           G +P +IG  L  L    +  N  TG++   L  
Sbjct: 227 FENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGL 285

Query: 278 TTNLHKLDINRN 289
            ++L  +D++ N
Sbjct: 286 ISSLKSMDLSNN 297

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 36/298 (12%)

Query: 20  LLLTQSLFAQANEADRLSLLAMNSWNNSINL-CQWTGVTCGH--RHQRVIGLDLRHQSIR 76
           LL  +S F  A +  R       +WN++ ++ C WTGV C +      V+ L+L    + 
Sbjct: 34  LLEIKSKFVDAKQNLR-------NWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLS 86

Query: 77  GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSN 136
           G LSP +G L  L+ ++L  N L  +IP E+GN   L+ L L NN F G+IP  + +  +
Sbjct: 87  GKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVS 146

Query: 137 LVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS 196
           L      NN++ G +P EI NLL    L    N++ GQLP SIGNL  L       N +S
Sbjct: 147 LENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMIS 206

Query: 197 GRIPSTRSHVRNLISFNVGLNQFSGMFP-------------------------PINNISS 231
           G +PS      +L+   +  NQ SG  P                          I+N +S
Sbjct: 207 GSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTS 266

Query: 232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           LE + ++KN+  G +P ++G +L +L F  +  N L G++   + N +   ++D + N
Sbjct: 267 LETLALYKNQLVGPIPKELG-DLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSEN 323

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 147/256 (57%), Gaps = 7/256 (2%)

Query: 40  AMNSWN--NSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLS-FLRSINLVN 96
           +++SWN  N  +LC WTGV+C + +Q +  LDL + +I G +SP +  LS  L  +++ +
Sbjct: 51  SLDSWNIPNFNSLCSWTGVSCDNLNQSITRLDLSNLNISGTISPEISRLSPSLVFLDISS 110

Query: 97  NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT-NLSRCSNLVKFEASNNKLEGEIPAEI 155
           NS   E+P E+  L  L+ L +++N F G++ T   S+ + LV  +A +N   G +P  +
Sbjct: 111 NSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSL 170

Query: 156 SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVG 215
           + L + + L++  N+  G++P S G+  +L+ ++++GN L GRIP+  +++  L+   +G
Sbjct: 171 TTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLG 230

Query: 216 -LNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
             N + G  P     + +L ++ +      GS+P ++G NL NL    +  N LTGS+  
Sbjct: 231 YYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELG-NLKNLEVLFLQTNELTGSVPR 289

Query: 274 SLSNTTNLHKLDINRN 289
            L N T+L  LD++ N
Sbjct: 290 ELGNMTSLKTLDLSNN 305

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 140/273 (51%), Gaps = 9/273 (3%)

Query: 20  LLLTQSLFAQANEADRLSLLAMNSWN-NSINLCQWTGVTCGHRHQ-RVIGLDLRHQSIRG 77
           L + +SL     E D L       WN ++IN C WTGVTC +    RVI L+L    + G
Sbjct: 31  LEVKKSLVTNPQEDDPL-----RQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTG 85

Query: 78  FLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNL 137
            +SP+ G    L  ++L +N+L   IP  + NL  L++L L +N  +G+IP+ L    N+
Sbjct: 86  SISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNI 145

Query: 138 VKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG 197
                 +N+L G+IP  + NL+  Q+L +A   L G +P+ +G L  +Q + +  N L G
Sbjct: 146 RSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEG 205

Query: 198 RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPN 256
            IP+   +  +L  F    N  +G  P  +  + +LE + +  N   G +P  +G  +  
Sbjct: 206 PIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG-EMSQ 264

Query: 257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L++  +  N L G +  SL++  NL  LD++ N
Sbjct: 265 LQYLSLMANQLQGLIPKSLADLGNLQTLDLSAN 297

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 26/254 (10%)

Query: 61  RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120
           + Q++  L L   S+ G + P +   S L   ++  N L  +IP ++G L  L+ L L++
Sbjct: 282 KLQKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGDLGKLVWLEQLQLSD 341

Query: 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180
           N F+G+IP  LS CS+L+  +   NKL G IP++I NL   Q   + +N + G +P+S G
Sbjct: 342 NMFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNLKSLQSFFLWENSISGTIPSSFG 401

Query: 181 NLSTLQEINVNGNRLSGRIPS------------------------TRSHVRNLISFNVGL 216
           N + L  ++++ N+L+GRIP                         + +  ++L+   VG 
Sbjct: 402 NCTDLVALDLSRNKLTGRIPEELFSLKRLSKLLLLGNSLSGGLPKSVAKCQSLVRLRVGE 461

Query: 217 NQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275
           NQ SG  P  I  + +L ++ ++ N + G LP +I  N+  L    +  N +TG +   L
Sbjct: 462 NQLSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEIS-NITVLELLDVHNNYITGDIPAQL 520

Query: 276 SNTTNLHKLDINRN 289
            N  NL +LD++RN
Sbjct: 521 GNLVNLEQLDLSRN 534

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
224113119	1065	predicted protein [Populus trichocarpa]	0.910	0.246	0.452	1e-58
224081190	1011	predicted protein [Populus trichocarpa]	0.968	0.276	0.425	8e-58
255585471	963	serine-threonine protein kinase, plant-t	0.934	0.280	0.452	5e-57
297819326	1022	hypothetical protein ARALYDRAFT_347817 [	0.955	0.270	0.425	8e-57
255577438	1028	receptor-kinase, putative [Ricinus commu	0.916	0.257	0.431	2e-56
255569851	710	serine-threonine protein kinase, plant-t	0.972	0.395	0.421	1e-55
224119102	1007	predicted protein [Populus trichocarpa]	0.951	0.273	0.436	3e-55
224097750	1023	predicted protein [Populus trichocarpa]	0.989	0.279	0.427	6e-55
224097752	1025	predicted protein [Populus trichocarpa]	0.986	0.278	0.413	6e-55
297818964	977	predicted protein [Arabidopsis lyrata su	0.958	0.283	0.406	2e-54

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/276 (45%), Positives = 170/276 (61%), Gaps = 13/276 (4%)

Query: 27  FAQANEADRLSLLAM------------NSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQS 74
            AQ NE D  SLLA+            +SWN S + C+W+GVTCG +HQRV+ LDL+   
Sbjct: 27  LAQGNETDIFSLLALKHQITDDPLGKLSSWNESTHFCEWSGVTCGKKHQRVVQLDLQSCK 86

Query: 75  IRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRC 134
           + G LSP VG +SFLR++NL NNS    IP E+G+LF+LQ L LTNN FSG+IP N+SRC
Sbjct: 87  LSGSLSPHVGNMSFLRTLNLENNSFGQNIPQELGSLFRLQALVLTNNSFSGEIPANISRC 146

Query: 135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR 194
           SNL+  E   N L G++PAE  +L K +     +N+L G++P + GNLS ++EI    N 
Sbjct: 147 SNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFPRNNLFGEIPPAYGNLSHIEEIQGGQNN 206

Query: 195 LSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVN 253
           L G IP +   ++ L  F+ G N  SG  P  I N+SSL +  +  N+ HGSLP D+G+ 
Sbjct: 207 LQGDIPKSIGKLKRLKHFSFGTNNLSGTIPTSIYNLSSLTHFSVPANQLHGSLPRDLGLT 266

Query: 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           LPNL  F I     +G +  ++SN +NL  LD+  N
Sbjct: 267 LPNLEIFRIHTCQFSGLIPVTISNVSNLSLLDLGLN 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 183/296 (61%), Gaps = 16/296 (5%)

Query: 10  LATLVICCFSLLLTQSLFA----QANEADRLSLLA-----------MNSWNNSINLCQWT 54
           +++ + C   LL+ Q  F+    + NE DRLSLLA           ++SWN S + C+W+
Sbjct: 6   MSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTHFCKWS 65

Query: 55  GVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQ 114
           GV CGHRHQR++ L+L+   + G LSP +G LSFLR +NL  N    +IP E+G LF+LQ
Sbjct: 66  GVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGRLFRLQ 125

Query: 115 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ 174
            L L NN FSG+IP N+S CSNL+     +N L G+IPA++ +L K     +  N+L G 
Sbjct: 126 RLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGNNLVGD 185

Query: 175 LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE 233
           +P+S GNLS++Q      N L G IP +  +++ L  F V  N  SG  P  I NISSL 
Sbjct: 186 IPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSICNISSLA 245

Query: 234 YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           Y+ + +N+ HGSLP D+G+NLPNL + +I+ N+L G +  +LSN + +  +D++ N
Sbjct: 246 YVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLSYN 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/285 (45%), Positives = 174/285 (61%), Gaps = 15/285 (5%)

Query: 13  LVICCFSLLLTQSLFAQANEADRLSLL------------AMNSWNNSINLCQWTGVTCGH 60
           ++I CFS   T S     NE D  +LL             + SWN +I+ CQW GVTCG 
Sbjct: 21  VLILCFSS--TTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVTCGL 78

Query: 61  RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120
            H+RV  LDL    I G +SP++G LSFLR++N+ NNS   EIP ++G L +L+ L L N
Sbjct: 79  LHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELRLNN 138

Query: 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180
           N   GKIPTN+SRCSNLV      NKLEG +P E+  L   Q+L+I  N L G +P S+G
Sbjct: 139 NSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPHSLG 198

Query: 181 NLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHK 239
           NLS LQ +++  NR+ G +P++   +RNL   ++  N+ SG  P  + N+SS+  + I +
Sbjct: 199 NLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLDIGE 258

Query: 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
           N +HG+LP DIG  LPN+R+F IS N  TG +  SLSN TNL  L
Sbjct: 259 NNFHGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLSNATNLESL 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819326|ref|XP_002877546.1| hypothetical protein ARALYDRAFT_347817 [Arabidopsis lyrata subsp. lyrata] gi|297323384|gb|EFH53805.1| hypothetical protein ARALYDRAFT_347817 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/282 (42%), Positives = 183/282 (64%), Gaps = 6/282 (2%)

Query: 14  VICCFSLLLTQSLFAQA-----NEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGL 68
           ++C  ++ LT+    QA     ++    S + + SWN+S+ LC WTGV CG +H+RV G+
Sbjct: 27  MVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGV 86

Query: 69  DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP 128
           DL    + G +SPFVG LSFLRS+NL +N  R  IP EVGNLF+LQ L ++NN+  G IP
Sbjct: 87  DLGGLKLTGVVSPFVGNLSFLRSLNLADNFFRGAIPLEVGNLFRLQYLNMSNNFLGGVIP 146

Query: 129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188
             LS CS+L   + S+N LE  +P E  +L K  IL++ +N+L G+ PAS+GNL++LQ +
Sbjct: 147 VVLSNCSSLSTLDLSSNHLEQGVPFEFGSLSKLVILSLGRNNLTGKFPASLGNLTSLQML 206

Query: 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF-PPINNISSLEYIFIHKNRYHGSLP 247
           +   N++ G IP + + ++ ++ F + LN+F+G+F PP+ N+SSL ++ I  N + G+L 
Sbjct: 207 DFIYNQIEGEIPGSLARLKQMVFFRIALNKFNGVFPPPVYNLSSLIFLSITGNSFSGTLR 266

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            D G  LPNL+   +  NN TG++ ++LSN + L +LDI  N
Sbjct: 267 PDFGSLLPNLQILYMGINNFTGTIPETLSNISVLQQLDIPSN 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/278 (43%), Positives = 175/278 (62%), Gaps = 13/278 (4%)

Query: 25  SLFAQANEADRLSLLA------------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRH 72
           SL  + NE DRLSLLA            ++SWN S++ C+W+G+TCG RHQRVI +DL  
Sbjct: 26  SLSGRGNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLES 85

Query: 73  QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS 132
             + G L+ F+G LSFLR +NL NNSL   IP E+G LF+L+ L L  N FSG+IP N+S
Sbjct: 86  SRLSGSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNIS 145

Query: 133 RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG 192
            CSNL+      N L G++PAE+ +L K Q+     N+L G++  S  NLS+L+ I    
Sbjct: 146 YCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTR 205

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIG 251
           N   G IP++   +++L +F++G + FSG+ PP I N+SSL  + +  N+ HG+LP D+G
Sbjct: 206 NNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLG 265

Query: 252 VNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +LP L    +  N  +GS+  ++SN +NL  LD+++N
Sbjct: 266 QSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQN 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569851|ref|XP_002525889.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534803|gb|EEF36493.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 177/299 (59%), Gaps = 18/299 (6%)

Query: 6   SNIC--LATLVICCFSLLLTQSLFAQANEADRLSLL------------AMNSWNNSINLC 51
           S+ C  +  L++C F   +  S     NE DRL+LL              NSWN+++  C
Sbjct: 15  SSFCFHVVALLVCNF---IMASSATTGNETDRLALLEFRAKINGDPLGVFNSWNDTLQFC 71

Query: 52  QWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLF 111
           +W GVTCG RHQRV  LDL+   + G +SP VG LSFLR + L NNS    IP ++G L 
Sbjct: 72  EWRGVTCGRRHQRVTKLDLQALRLSGSISPHVGNLSFLRELYLQNNSFSQSIPPQIGRLR 131

Query: 112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHL 171
           +LQ L L  N   G+IP N+S CSNLV+ +   N+LEG IP EI  L K Q ++   NHL
Sbjct: 132 RLQELFLNTNSLRGEIPPNISGCSNLVRIQVQVNQLEGSIPMEIGFLSKVQNISFGNNHL 191

Query: 172 KGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNIS 230
            G +P S+GNLS+L+ +  + N  SG +P T   + NL+   +  N+FSG+ P  I N+S
Sbjct: 192 TGSIPPSLGNLSSLKALYASDNNFSGSLPPTLGQLENLMLLQLSNNEFSGIIPASIFNLS 251

Query: 231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S+    I  NR+ G LP ++G N PN++FF IS N  +GS+ +S+SN +N+ K+ +  N
Sbjct: 252 SILAFDIRSNRFTGYLPSELGNNFPNIKFFSISLNQFSGSIPNSISNFSNILKIQLGGN 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/291 (43%), Positives = 180/291 (61%), Gaps = 16/291 (5%)

Query: 12  TLVICCFSLLLTQSLFAQANEADRLSLLAMNS------------WNNSINLCQWTGVTCG 59
            L++ CF+   + +L    NE DRL+LL   S            WN+SI+ C W GVTC 
Sbjct: 16  VLLLLCFT---SSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWFGVTCS 72

Query: 60  HRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLT 119
            +HQRV  LDL+   + G +SP++G LSFLR++ L +NS   EIP ++G+L +LQ L L 
Sbjct: 73  QKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLHRLQILALH 132

Query: 120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI 179
           NN F+G+IP ++S   NLV     NNKL GEIP E  + LK   L I  N+L G +P S+
Sbjct: 133 NNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGTIPPSL 192

Query: 180 GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIH 238
           GN+S+LQE+ ++ N L G +P+T S + NL   ++  N+FSG  PP + N+SSL    + 
Sbjct: 193 GNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLRTFQVG 252

Query: 239 KNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            N + G+LP D+G++LPNL FF I  N  TGS+  S+SN +NL  L++N N
Sbjct: 253 LNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLELNLN 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 177/302 (58%), Gaps = 16/302 (5%)

Query: 1   MPNCISNICLAT-LVICCFSLLLTQSLFAQANEADRLSLLA-----------MNSWNNSI 48
           +P   SNI  +  L+I  FS+    S     NE DRLSLLA           ++SWN S+
Sbjct: 3   IPGLSSNILYSLFLLIIQFSI---ASCLLVGNETDRLSLLAFKTQISDPLGKLSSWNESL 59

Query: 49  NLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG 108
           + C+W+GV CG +H+RV+ LDL    + G LSP +G LSFLR +NL  NS    IP E+G
Sbjct: 60  HFCEWSGVICGRKHRRVVELDLHSSQLAGSLSPHIGNLSFLRILNLEKNSFSYLIPQELG 119

Query: 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168
            LF++Q L+L NN FSG+IP N+SRC+NL+    ++N L G++PAE  +L K Q+LN  +
Sbjct: 120 RLFRIQELSLGNNTFSGEIPVNISRCTNLLSIGLASNNLTGKLPAEFGSLSKLQVLNFQR 179

Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PIN 227
           NHL G++P S GNLS LQ I    N L G IP +   ++ L  F  G+N  SG  P  I 
Sbjct: 180 NHLFGEIPPSYGNLSELQIIRGVRNNLQGGIPDSIGQLKRLADFTFGVNSLSGTIPSSIY 239

Query: 228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN 287
           N+SSL       N+ +G LP ++G+ LPNL  F I  N   G +  +LSN + +  L + 
Sbjct: 240 NMSSLVRFSAPLNQLYGILPPELGLTLPNLDTFNILSNQFRGLIPSTLSNASKISDLQLR 299

Query: 288 RN 289
            N
Sbjct: 300 NN 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 180/302 (59%), Gaps = 17/302 (5%)

Query: 1   MPNCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAM------------NSWNNSI 48
           M +CI    L  L +    L +  SL    NE DRLSLLA+            +SWN S+
Sbjct: 6   MSSCI----LWLLFLQIIQLPIPFSLPTGGNETDRLSLLALKSQITNDPFGMLSSWNESL 61

Query: 49  NLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG 108
           + C W+GV CG RH+RV+ +DL    + G LSP +G LSFLR + L NN     IP E+G
Sbjct: 62  HFCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLSFLRILKLENNRFSHNIPQELG 121

Query: 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168
           +LF+L+ L+L NN F GKIP N+S CSNL+    S N L G++P E+ +L K Q+     
Sbjct: 122 HLFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLTGKLPIELGSLSKLQVFFFQF 181

Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-IN 227
           N+L G +P+S GNLS + +I   GN L G IP++   +++L SF+ G N  +GM PP I 
Sbjct: 182 NYLVGGIPSSFGNLSAIIQIFGAGNYLQGGIPNSIGQLKSLKSFSFGRNNMTGMIPPSIY 241

Query: 228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN 287
           N+SSL    +  N+ HG+LP D+G+ LPNL   ++S N  +GS+  + SN + +  ++++
Sbjct: 242 NLSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRFSGSIPPTFSNASTIAVIELS 301

Query: 288 RN 289
            N
Sbjct: 302 NN 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818964|ref|XP_002877365.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323203|gb|EFH53624.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 178/290 (61%), Gaps = 13/290 (4%)

Query: 13  LVICCFSLLLTQSLFAQANEADRLSLL------------AMNSWNNSINLCQWTGVTCGH 60
            ++  +S L+    +   +E D  +LL             ++SWN+S  LC WTG+TCG 
Sbjct: 4   FLLFSYSALMLLDAYGFTDETDMQALLEFKSQISEEKIDVLSSWNHSFPLCSWTGITCGR 63

Query: 61  RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120
           +H+RVIGLDL+   + G +SP++G LSFL  +NL +NS    IP EVGNLF+L++L ++ 
Sbjct: 64  KHKRVIGLDLKGLQLSGVISPYIGNLSFLIWLNLSDNSFGGTIPQEVGNLFRLKHLDMSF 123

Query: 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180
           N   G I  +LS CS LV     +N L G +P+E+ +L K   L +  N+LKG+LPAS+G
Sbjct: 124 NLLGGGIQVSLSNCSRLVVLIFDSNHLGGSVPSELGSLRKLVSLYLGGNNLKGKLPASLG 183

Query: 181 NLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHK 239
           NL++L+E+++  N + GRIP   + +  ++  ++ +N FSG+FPP I N+SSL+Y++I  
Sbjct: 184 NLTSLRELHLGFNNIEGRIPDDIARLNQMLVLDLAVNNFSGVFPPLIYNLSSLKYLYISG 243

Query: 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           NR+   L  D G  LPNL    +  N+ TG +  +LSN + L KL IN N
Sbjct: 244 NRFSAFLRSDFGKLLPNLVALNMGQNSFTGVIPTTLSNISTLQKLAINDN 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.955	0.269	0.425	5.8e-58
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.961	0.269	0.410	4.8e-54
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.861	0.246	0.4	9.4e-50
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.920	0.263	0.389	6.8e-49
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.955	0.273	0.373	2.8e-47
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.865	0.243	0.379	1.6e-39
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.851	0.302	0.369	1.8e-39
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.930	0.312	0.341	5.1e-37
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.865	0.254	0.342	1.1e-35
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.916	0.235	0.341	1e-34

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 5.8e-58, P = 5.8e-58
 Identities = 120/282 (42%), Positives = 182/282 (64%)

Query:    14 VICCFSLLLTQSLFAQA-----NEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGL 68
             ++C  ++ LT+    QA     ++    S + + SWN+S+ LC WTGV CG +H+RV G+
Sbjct:    27 MVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGV 86

Query:    69 DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP 128
             DL    + G +SPFVG LSFLRS+NL +N     IP EVGNLF+LQ L ++NN F G IP
Sbjct:    87 DLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIP 146

Query:   129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188
               LS CS+L   + S+N LE  +P E  +L K  +L++ +N+L G+ PAS+GNL++LQ +
Sbjct:   147 VVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQML 206

Query:   189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP 247
             +   N++ G IP   + ++ +I F + LN+F+G+FPP I N+SSL ++ I  N + G+L 
Sbjct:   207 DFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLR 266

Query:   248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              D G  LPNL+   +  N+ TG++ ++LSN ++L +LDI  N
Sbjct:   267 PDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSN 308

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 4.8e-54, P = 4.8e-54
 Identities = 121/295 (41%), Positives = 180/295 (61%)

Query:    12 TLVICCFSLLLTQSLFAQA---NEADRLSLL-------------AMNSWNNSINLCQWTG 55
             +LV    +LLL   +FAQA   NE D  +LL              + SWN+S   C W G
Sbjct:     6 SLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIG 65

Query:    56 VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQN 115
             VTCG R +RVI L+L    + G +SP +G LSFLR +NL +NS  + IP +VG LF+LQ 
Sbjct:    66 VTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQY 125

Query:   116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL 175
             L ++ N   G+IP++LS CS L   + S+N L   +P+E+ +L K  IL+++KN+L G  
Sbjct:   126 LNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNF 185

Query:   176 PASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEY 234
             PAS+GNL++LQ+++   N++ G IP   + +  ++ F + LN FSG FPP + NISSLE 
Sbjct:   186 PASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLES 245

Query:   235 IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             + +  N + G+L  D G  LPNLR  ++  N  TG++  +L+N ++L + DI+ N
Sbjct:   246 LSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSN 300

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 9.4e-50, P = 9.4e-50
 Identities = 100/250 (40%), Positives = 158/250 (63%)

Query:    41 MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100
             ++SWNNS  LC W  VTCG +H+RV  L+L    + G +SP +G +SFL S++L +N+  
Sbjct:    44 LSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFG 103

Query:   101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLK 160
               IP EVGNLF+L++L +  N   G IP  LS CS L+  +  +N L   +P+E+ +L K
Sbjct:   104 GIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTK 163

Query:   161 FQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS 220
               IL++ +N+LKG+LP S+GNL++L+ +    N + G +P   + +  ++   + +N+F 
Sbjct:   164 LVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFF 223

Query:   221 GMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT 279
             G+FPP I N+S+LE +F+  + + GSL  D G  LPN+R   +  N+L G++  +LSN +
Sbjct:   224 GVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNIS 283

Query:   280 NLHKLDINRN 289
              L K  IN+N
Sbjct:   284 TLQKFGINKN 293

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 6.8e-49, P = 6.8e-49
 Identities = 104/267 (38%), Positives = 160/267 (59%)

Query:    24 QSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFV 83
             Q+L    ++      + ++SWN+S  LC W GVTCG +++RV  L+L    + G +SP +
Sbjct:    27 QALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSI 86

Query:    84 GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
             G LSFL S++L  N     IP EVG L +L+ L +  NY  G IP  L  CS L+     
Sbjct:    87 GNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLD 146

Query:   144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
             +N+L G +P+E+ +L     LN+  N+++G+LP S+GNL+ L+++ ++ N L G IPS  
Sbjct:   147 SNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDV 206

Query:   204 SHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
             + +  + S  +  N FSG+FPP + N+SSL+ + I  N + G L  D+G+ LPNL  F +
Sbjct:   207 AQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNM 266

Query:   263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
              GN  TGS+  +LSN + L +L +N N
Sbjct:   267 GGNYFTGSIPTTLSNISTLERLGMNEN 293

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.8e-47, P = 2.8e-47
 Identities = 108/289 (37%), Positives = 166/289 (57%)

Query:    14 VICCFSLLLTQSLFAQANEADRLSLL------------AMNSWNNSINLCQWTGVTCGHR 61
             ++  F+ L+    +   +E+DR +LL            A+++WNNS  LC W  V CG +
Sbjct:     5 LLLAFNALMQLEAYGFTDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRK 64

Query:    62 HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN 121
             H+RV  LDL    + G +SP +G LSFL  ++L NNS    IP E+GNLF+L+ L +  N
Sbjct:    65 HKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFN 124

Query:   122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGN 181
             Y  G+IP +LS CS L+  +  +N L   +P+E+ +L K   L +  N LKG+ P  I N
Sbjct:   125 YLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRN 184

Query:   182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKN 240
             L++L  +N+  N L G IP   + +  ++S  + +N FSG+FPP   N+SSLE +++  N
Sbjct:   185 LTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGN 244

Query:   241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              + G+L  D G  LPN+    + GN LTG++  +L+N + L    I +N
Sbjct:   245 GFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKN 293

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 432 (157.1 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 98/258 (37%), Positives = 149/258 (57%)

Query:    40 AMNSWNNSIN--LCQWTGVTCGHRHQR----VIGLDLRHQSIRGFLSPFVGYLSFLRSIN 93
             ++ SWN S +   C W GV CG R +R    V+ L LR  ++ G +SP +G LSFLR ++
Sbjct:    50 SLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELD 109

Query:    94 LVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPA 153
             L +N L  EIP E+  L +LQ L L++N   G IP  +  C+ L   + S+N+L G IP 
Sbjct:   110 LGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPR 169

Query:   154 EISNLLK-FQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISF 212
             EI   LK    L + KN L G++P+++GNL++LQE +++ NRLSG IPS+   + +L++ 
Sbjct:   170 EIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTM 229

Query:   213 NVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
             N+G N  SGM P  I N+SSL    + +N+  G +P +    L  L    +  N   G +
Sbjct:   230 NLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKI 289

Query:   272 QDSLSNTTNLHKLDINRN 289
               S++N ++L  + I  N
Sbjct:   290 PASVANASHLTVIQIYGN 307

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 429 (156.1 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 93/252 (36%), Positives = 142/252 (56%)

Query:    40 AMNSWNNSIN--LCQWTGVTCGHRH-QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVN 96
             ++ SWN S +   C W GV CG RH  RV+ L LR  ++ G +SP +G LSFLR++ L +
Sbjct:    52 SLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSD 111

Query:    97 NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEIS 156
             N L  +IP E+  L +LQ L L  N  SG+IP  L   ++L   E +NN L G IP+ + 
Sbjct:   112 NHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLG 171

Query:   157 NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGL 216
              L     L +A+N L G +P+S G L  L  +++  N LSG IP    ++ +L  F V  
Sbjct:   172 KLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVIS 231

Query:   217 NQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274
             N+ SG  P    +N+ SL+ ++++ N++HG +P  IG N  N+  F I  N+ +G +   
Sbjct:   232 NKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIG-NASNISIFTIGLNSFSGVVPPE 290

Query:   275 LSNTTNLHKLDI 286
             +    NL +L++
Sbjct:   291 IGRMRNLQRLEL 302

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.1e-37, P = 5.1e-37
 Identities = 95/278 (34%), Positives = 149/278 (53%)

Query:    19 SLLLTQSLFAQANEADRLSL-LAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRG 77
             +LL  +  F + NE++++   ++++SWN SI+ C W GVTC      VI L+L H  +  
Sbjct:    37 ALLEFKHEFPRVNESNQIPYDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNN 96

Query:    78 FLSPFVGY--LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS 135
              L P  G   L  L ++ L N SL  +IP  +GNLF+L  L L+ NY  G++P ++   S
Sbjct:    97 SLKPNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLS 156

Query:   136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL 195
              L   +  +NKL G++PA I NL + + L  + N   G +P +  NL+ L  +N+  N  
Sbjct:   157 RLTILDLWDNKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSF 216

Query:   196 SGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDI-GVN 253
                +P   S  +NL  FNVG N FSG  P  +  I SL +  +  N + G  P++   + 
Sbjct:   217 ESMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKG--PIEFRNMY 274

Query:   254 LPN--LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              P+  L++  +S N   G + D+LS   NL +LD++ N
Sbjct:   275 SPSTRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFN 312

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 88/257 (34%), Positives = 137/257 (53%)

Query:    39 LAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFL----SPF-VGYLSFLRSIN 93
             L   SW N+ + C W G+ C  +   VI LDL    +RG L    S F +  L FL +++
Sbjct:    59 LKTESWTNNSDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRLPQLRFLTTLD 118

Query:    94 LVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPA 153
             L NN    +IP  +  L  L  L L+ N+FSG+IP+++   S+L+  + S+N   G+IP+
Sbjct:   119 LSNNDFIGQIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPS 178

Query:   154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN 213
              +  L      N++ N+  G++P+SIGNLS L  + ++ N   G +PS+   + +L    
Sbjct:   179 SLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLGSLFHLTDLI 238

Query:   214 VGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 272
             +  N F G  P  + N+S L  I +HKN + G +P  +G NL  L  FI+S NN+ G + 
Sbjct:   239 LDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLG-NLSCLTSFILSDNNIVGEIP 297

Query:   273 DSLSNTTNLHKLDINRN 289
              S  N   L  L++  N
Sbjct:   298 SSFGNLNQLDILNVKSN 314

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 94/275 (34%), Positives = 136/275 (49%)

Query:    24 QSLFAQANEADRLSLLAMNSWNNSINL-CQWTGVTCGHRHQR-------VIGLDLRHQSI 75
             Q L    N   + SL  +++WN      C W GV C  +          V  LDL   ++
Sbjct:    38 QFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNL 97

Query:    76 RGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS 135
              G +SP +G L  L  +NL  N+L  +IP E+GN  KL+ + L NN F G IP  +++ S
Sbjct:    98 SGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLS 157

Query:   136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL 195
              L  F   NNKL G +P EI +L   + L    N+L G LP S+GNL+ L       N  
Sbjct:   158 QLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDF 217

Query:   196 SGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNL 254
             SG IP+      NL    +  N  SG  P  I  +  L+ + + +N++ G +P DIG NL
Sbjct:   218 SGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG-NL 276

Query:   255 PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              +L    + GN+L G +   + N  +L KL + +N
Sbjct:   277 TSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQN 311

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  146 bits (369), Expect = 2e-39
 Identities = 83/251 (33%), Positives = 143/251 (56%), Gaps = 6/251 (2%)

Query: 41  MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100
           +++WN+S ++C W G+TC +   RV+ +DL  ++I G +S  +  L ++++INL NN L 
Sbjct: 48  LSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 101 AEIPHEVGNL-FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLL 159
             IP ++      L+ L L+NN F+G IP       NL   + SNN L GEIP +I +  
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF 219
             ++L++  N L G++P S+ NL++L+ + +  N+L G+IP     +++L    +G N  
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 220 SGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNT 278
           SG  P  I  ++SL ++ +  N   G +P  +G NL NL++  +  N L+G +  S+ + 
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 279 TNLHKLDINRN 289
             L  LD++ N
Sbjct: 284 QKLISLDLSDN 294

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (291), Expect = 5e-29
 Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL +  + G +   +G  S L+ ++L  N L  +IP+ + NL  L+ LTL +N   G+I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  L +  +L       N L GEIP EI  L     L++  N+L G +P+S+GNL  LQ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL 246
           + +  N+LSG IP +   ++ LIS ++  N  SG  P  +  + +LE + +  N + G +
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           P+ +  +LP L+   +  N  +G +  +L    NL  LD++ N
Sbjct: 325 PVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 3e-25
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL + ++ G +   +G L  L+ + L  N L   IP  + +L KL +L L++N  SG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  + +  NL      +N   G+IP  +++L + Q+L +  N   G++P ++G  + L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL 246
           ++++ N L+G IP       NL    +  N   G  P  +    SL  + +  N + G L
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           P +    LP + F  IS NNL G +     +  +L  L + RN
Sbjct: 421 PSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (253), Expect = 6e-24
 Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 25/251 (9%)

Query: 63  QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY 122
           Q++I LDL   S+ G +   V  L  L  ++L +N+   +IP  + +L +LQ L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 123 FSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI------------SNLLKFQI------- 163
           FSG+IP NL + +NL   + S N L GEIP  +            SN L+ +I       
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 164 -----LNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQ 218
                + +  N   G+LP+    L  +  ++++ N L GRI S +  + +L   ++  N+
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 219 FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNT 278
           F G  P       LE + + +N++ G++P  +G +L  L    +S N L+G + D LS+ 
Sbjct: 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSC 522

Query: 279 TNLHKLDINRN 289
             L  LD++ N
Sbjct: 523 KKLVSLDLSHN 533

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.5 bits (222), Expect = 5e-20
 Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LD+ + +++G ++     +  L+ ++L  N     +P   G+  +L+NL L+ N FSG +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAV 491

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  L   S L++ + S NKL GEIP E+S+  K   L+++ N L GQ+PAS   +  L +
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225
           ++++ N+LSG IP    +V +L+  N+  N   G  P 
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L      G L    G    L +++L  N     +P ++G+L +L  L L+ N  SG+I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  LS C  LV  + S+N+L G+IPA  S +     L++++N L G++P ++GN+ +L +
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 188 INVNGNRLSGRIPST 202
           +N++ N L G +PST
Sbjct: 576 VNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 89  LRSINLVNNSLRAEIPHEV---GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L  ++L  N+L  EIP  +   GNLFKL    L +N   G+IP +L  C +L +    +N
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKL---ILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
              GE+P+E + L     L+I+ N+L+G++ +   ++ +LQ +++  N+  G +P +   
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FG 473

Query: 206 VRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
            + L + ++  NQFSG  P  + ++S L  + + +N+  G +P ++  +   L    +S 
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSH 532

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
           N L+G +  S S    L +LD+++N
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query: 116 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL 175
           L L N    G IP ++S+  +L     S N + G IP  + ++   ++L+++ N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 176 PASIGNLSTLQEINVNGNRLSGRIPS 201
           P S+G L++L+ +N+NGN LSGR+P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 53  WTGVTCG----HRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG 108
           W+G  C          + GL L +Q +RGF+   +  L  L+SINL  NS+R  IP  +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLL 159
           ++  L+ L L+ N F+G IP +L + ++L     + N L G +PA +   L
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 61  RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN 120
             +R+  LDL      G +   +G LS L  + L  N L  EIP E+ +  KL +L L++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180
           N  SG+IP + S    L + + S N+L GEIP  + N+     +NI+ NHL G LP S G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STG 591

Query: 181 NLSTLQEINVNGN 193
               +    V GN
Sbjct: 592 AFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 26/81 (32%), Positives = 48/81 (59%)

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           N  L G IP +IS L   Q +N++ N ++G +P S+G++++L+ ++++ N  +G IP + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 204 SHVRNLISFNVGLNQFSGMFP 224
             + +L   N+  N  SG  P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 24/112 (21%)

Query: 164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF 223
           L +    L+G +P  I  L  LQ IN++GN + G IP                       
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP----------------------- 459

Query: 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275
           P + +I+SLE + +  N ++GS+P  +G  L +LR   ++GN+L+G +  +L
Sbjct: 460 PSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL    I    SP +  L  L++++L  N L +++P  + NL  L NL L+ N  S  +
Sbjct: 145 LDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  +   S L + + SNN +  E+ + +SNL     L ++ N L+  LP SIGNLS L+ 
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 188 INVNGNRLS 196
           ++++ N++S
Sbjct: 260 LDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 86  LSFLRSINLVNNSLRA--EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
           LS L S++L++ S  +  +    + NL  L +L L  N       + L   +NL   +  
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLD 124

Query: 144 NNKLEGEIPAEISNL-LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
           NN +  +IP  I  L    + L+++ N ++  LP+ + NL  L+ ++++ N LS  +P  
Sbjct: 125 NNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
            S++ NL + ++  N+ S + P I  +S+LE + +  N     L   +  NL NL    +
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLEL 239

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S N L     +S+ N +NL  LD++ N
Sbjct: 240 SNNKLEDLP-ESIGNLSNLETLDLSNN 265

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PLN03150	623	hypothetical protein; Provisional	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
PLN03150	623	hypothetical protein; Provisional	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.42
KOG4308	478	consensus LRR-containing protein [Function unknown	95.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.07
KOG4308	478	consensus LRR-containing protein [Function unknown	94.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.59
KOG4341	483	consensus F-box protein containing LRR [General fu	94.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.1
smart00370	26	LRR Leucine-rich repeats, outliers.	92.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.66
smart00370	26	LRR Leucine-rich repeats, outliers.	90.66
KOG4341	483	consensus F-box protein containing LRR [General fu	87.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.34
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.61

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-34  Score=282.15  Aligned_cols=257  Identities=32%  Similarity=0.599  Sum_probs=168.6

Q ss_pred             ChHhHHHHHh-----------cCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCC
Q 045366           31 NEADRLSLLA-----------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSL   99 (289)
Q Consensus        31 ~~~~~~~l~~-----------~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l   99 (289)
                      .+.|+.++.+           +.+|+...++|.|.|+.|+.. .+|+.|+++++.+.+..+..+..+++|+.|++++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            3456666665           457988889999999999864 6899999999999998898999999999999999999


Q ss_pred             cccCCcccc-cccccccccccccccCCCCC----------------------ccccCCCCCcEEEccCCcCCCCcchhcc
Q 045366          100 RAEIPHEVG-NLFKLQNLTLTNNYFSGKIP----------------------TNLSRCSNLVKFEASNNKLEGEIPAEIS  156 (289)
Q Consensus       100 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~  156 (289)
                      .+.+|..+. .+++|++|++++|.+++.+|                      ..++.+++|++|++++|.+.+.+|..++
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence            877776654 67777777777777665444                      3344444555555555554444455555


Q ss_pred             CCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEE
Q 045366          157 NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYI  235 (289)
Q Consensus       157 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L  235 (289)
                      ++++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..+. +.++++|++|
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  265 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL  265 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence            555555555555555545555555555555555555555555555555555555566555555554443 5555566666


Q ss_pred             EccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          236 FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       236 ~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ++++|++.+.+|..+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|
T Consensus       266 ~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        266 FLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             ECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence            6666666555555554 5566666666666666666666666666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=2.4e-29  Score=245.16  Aligned_cols=226  Identities=32%  Similarity=0.550  Sum_probs=159.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            44556666666666666666777777777777777776667777777777777777777777667777777777777777


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+.+|..++.+++|++|++++|.+.+..|..++++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence            77777766777777777777777777777766777777777777777777777666666677777777777777777665


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+. +.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus       300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        300 IPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             CChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            554 66667777777777777666665554 6677777777777777667776777777777777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=4.4e-27  Score=203.96  Aligned_cols=257  Identities=19%  Similarity=0.177  Sum_probs=184.1

Q ss_pred             HhHHHHHhcCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccc
Q 045366           33 ADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK  112 (289)
Q Consensus        33 ~~~~~l~~~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  112 (289)
                      ++..++.++.+.+-+.+.-....-.|-+...+++.|+|++|+|+..-...|..+..|..|.|+.|.++...+..|..+++
T Consensus       143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            34444444444444443333333344455567888888888888777777777777777888888777555556666777


Q ss_pred             cccccccccccCC------------------------CCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366          113 LQNLTLTNNYFSG------------------------KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus       113 L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      |+.|+|..|.|.-                        .-.+.|-.+.++++|+|+.|+++....+++..+++|+.|+++.
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            7777777777651                        1223344445566666666666555555666777777777777


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP  247 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~  247 (289)
                      |.+....++.+...++|++|++++|.++...+++|..+..|++|+|++|.++.+... |..+++|++|++++|.+++.|.
T Consensus       303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            777777777777778888888888888766677788888888888888888766555 7788899999999999886665


Q ss_pred             h--hhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          248 L--DIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       248 ~--~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +  ..|.++++|+.|++.+|++.......|.++++|++|||.+|
T Consensus       383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence            4  34568899999999999999656678999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=7.4e-27  Score=202.54  Aligned_cols=226  Identities=19%  Similarity=0.229  Sum_probs=116.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|+|.+|.|+.+-.+.+..++.|+.|||+.|.|+.+....|..-.++++|+|++|+|+...-..|.++.+|.+|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            56777777777776665555555555666666665555433334444455555555555555444444445555555555


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccc------------------------cccCChhccCCCCCCEEEccCccCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHL------------------------KGQLPASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      ++|+++...+..|+.+++|+.|++..|++                        .......|..+.++++|++..|++...
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            55555544344444455555555554443                        333333444444555555555555443


Q ss_pred             CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      -.+++.+++.|+.|++++|.|..+... +...++|++|++++|+++ .+++..+..+..|++|.|++|.+.......|..
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            444455555555555555555544443 555555555555555554 444444434444445555544444333334444


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|||++|
T Consensus       364 lssL~~LdLr~N  375 (873)
T KOG4194|consen  364 LSSLHKLDLRSN  375 (873)
T ss_pred             hhhhhhhcCcCC
Confidence            444555544444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=1.1e-23  Score=184.73  Aligned_cols=220  Identities=25%  Similarity=0.387  Sum_probs=141.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccC------------------
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS------------------  124 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------  124 (289)
                      .+...|.|++|+|..+..+.+.+++.|-.|+|++|.+. .+|+....+..|++|+|++|.+.                  
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            34455555555555544445555666666666666665 45555566666666666666442                  


Q ss_pred             -------CCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc
Q 045366          125 -------GKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG  197 (289)
Q Consensus       125 -------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  197 (289)
                             ..+|..+.++.+|+.++++.|.+. .+|+.+.++++|+.|++++|.++ .+....+.+.+|++|+++.|+++ 
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-
Confidence                   113444555556666666666665 55666666666666666666666 33334455566666666666666 


Q ss_pred             cCCccccCCCCCcEEeccCCcCc--ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc
Q 045366          198 RIPSTRSHVRNLISFNVGLNQFS--GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL  275 (289)
Q Consensus       198 ~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  275 (289)
                      .+|.++.++++|+.|.+.+|+++  |++..++++..|+.+..++|++. .+|..+. .++.|+.|.|+.|++- .+|+.+
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc-RC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-RCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh-hhHHHHHhccccccee-echhhh
Confidence            56777777777777777777653  55555777777777777777776 6677766 7777888888877776 677777


Q ss_pred             cCCCCCCeEeCcCC
Q 045366          276 SNTTNLHKLDINRN  289 (289)
Q Consensus       276 ~~~~~L~~L~l~~N  289 (289)
                      .-++-|+.||+..|
T Consensus       359 HlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  359 HLLPDLKVLDLREN  372 (1255)
T ss_pred             hhcCCcceeeccCC
Confidence            77777788877765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.1e-23  Score=184.61  Aligned_cols=220  Identities=25%  Similarity=0.384  Sum_probs=118.3

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCc-ccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPH-EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .++.|||++|.+.. .|..+..-+++-.|+|++|+|.. +|. .|-++.-|-+|||++|++. .+|+.+..+..|++|.|
T Consensus       104 dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  104 DLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             cceeeecchhhhhh-cchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence            34444444444432 23344444444444444444442 222 2334444444444444444 44444444444444444


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeeccccc-ccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLK-GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      ++|.+.----..+.++++|+.|.+++.+-+ ..+|..+..+.+|..++++.|++. ..|+++..+++|+.|+|++|.++.
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence            444432111111222333333333333222 246666777777777888877777 677777777788888887777776


Q ss_pred             cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc-c-----------------------ccCccccC
Q 045366          222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT-G-----------------------SLQDSLSN  277 (289)
Q Consensus       222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~-----------------------~~~~~~~~  277 (289)
                      .......+.++++|++++|+++ .+|..+. .++.|+.|.+.+|+++ +                       .+|+.++.
T Consensus       260 L~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR  337 (1255)
T KOG0444|consen  260 LNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR  337 (1255)
T ss_pred             eeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence            5544555566777777777766 6666655 5555555555555443 1                       45666666


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      |+.|+.|.|++|
T Consensus       338 C~kL~kL~L~~N  349 (1255)
T KOG0444|consen  338 CVKLQKLKLDHN  349 (1255)
T ss_pred             hHHHHHhccccc
Confidence            666666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=3e-24  Score=179.03  Aligned_cols=218  Identities=24%  Similarity=0.417  Sum_probs=160.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .-++.+++.+|.+.. +|+.++.+..++.++.++|++. .+|..+..+..+..++.++|.+. .+|+.++.+..++.++.
T Consensus        68 ~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            346677777777664 5777788888888888888887 57777888888888888888887 77777888888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      .+|.++ ..|+.+.++.++..+++.+|.+.. .|+..-+++.|++++...|.++ .+|..++.+.+|+.|++..|++...
T Consensus       145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l  221 (565)
T KOG0472|consen  145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL  221 (565)
T ss_pred             cccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence            888887 677777788888888888888774 3444444888888888887776 6777788888888888888887754


Q ss_pred             CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      + .|.+++.|+++++..|.++ .+|.+...+++++..||+++|+++ +.|..++-+.+|++||+|+|
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence            3 5666666666666666665 666666666666666666666666 66666666666666666665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-22  Score=167.43  Aligned_cols=226  Identities=15%  Similarity=0.229  Sum_probs=180.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ...+.|+|+.|.|+.+.+..|+.+.+|++|+|++|+|+.+-|++|.++..+..|-+.+ |+|+....+.|.++.+++.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            6789999999999999999999999999999999999999999999999988887766 889844446677777777777


Q ss_pred             ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccC--------------------------
Q 045366          142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL--------------------------  195 (289)
Q Consensus       142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~--------------------------  195 (289)
                      +.-|++.-...+.|..++++..|.+.+|.+...-...|..+..++++++..|.+                          
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            777777766667777777777777777766532222444444444444444330                          


Q ss_pred             -----------------------------------ccc-CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366          196 -----------------------------------SGR-IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIH  238 (289)
Q Consensus       196 -----------------------------------~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~  238 (289)
                                                         .+. ....|..+++|+.+++++|+++++-+. |.....+++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                               000 112456789999999999999988776 9999999999999


Q ss_pred             CCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          239 KNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       239 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +|++. .+...+|+++..|+.|+|.+|+|+...|..|..+.+|..|++-.|
T Consensus       307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            99998 778888889999999999999999999999999999999987655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.80  E-value=1.3e-22  Score=169.32  Aligned_cols=216  Identities=27%  Similarity=0.426  Sum_probs=192.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .....++.++|++. .+|+.+..+..+..+++++|.+. ..|+.++.+-.++.++..+|+++ ..|+.+..+.++..+++
T Consensus        91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~  167 (565)
T KOG0472|consen   91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL  167 (565)
T ss_pred             HHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence            35667788888887 47888999999999999999997 67888999999999999999998 88989999999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      .+|++....|..+ .+..|++||...|.+. .+|+.++.+.+|.-|++..|.+. ..| .|+.+..|++++++.|++.-.
T Consensus       168 ~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l  243 (565)
T KOG0472|consen  168 EGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML  243 (565)
T ss_pred             cccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh
Confidence            9999984444444 5999999999999888 78999999999999999999998 667 899999999999999999866


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.. ..+++++..||+..|+++ ..|+++. .+++|+.||+|+|.++ ..|..++++ +|+.|-+.+|
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             HHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCC
Confidence            665 668999999999999998 8999988 8999999999999999 778889999 8999998887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=3.8e-21  Score=174.94  Aligned_cols=219  Identities=25%  Similarity=0.391  Sum_probs=181.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.+|++++.+.+ +|+.+..+.+|+.+...+|.+. .+|..+...++|+.|...+|.+. .+|....++..|+.|++
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            678888888888775 4688888899999999999985 67888888889999999999988 78888888999999999


Q ss_pred             cCCcCCCCcchhc--------------------------cCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366          143 SNNKLEGEIPAEI--------------------------SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       143 ~~n~~~~~~~~~~--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      ..|++. ..|..+                          ..++.|+.|++.+|.+++..-+.+.+++.|+.|+|++|.+.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            999986 445432                          12345888889999998877778899999999999999998


Q ss_pred             ccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-cCccc
Q 045366          197 GRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSL  275 (289)
Q Consensus       197 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~  275 (289)
                      ......+.++..|++|+|++|.++.++..+..+..|++|...+|.+. ..| ++. .++.|+.+|+|.|+++.. +|.. 
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~-  472 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEA-  472 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhh-
Confidence            55556788999999999999999987755888899999999999997 677 655 899999999999999743 3332 


Q ss_pred             cCCCCCCeEeCcCC
Q 045366          276 SNTTNLHKLDINRN  289 (289)
Q Consensus       276 ~~~~~L~~L~l~~N  289 (289)
                      ..-++|++||+++|
T Consensus       473 ~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGN  486 (1081)
T ss_pred             CCCcccceeeccCC
Confidence            23389999999998

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=2.2e-21  Score=144.68  Aligned_cols=164  Identities=23%  Similarity=0.407  Sum_probs=121.8

Q ss_pred             ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366           83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ  162 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  162 (289)
                      +-.+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..+.++++|+.|+++.|++. ..|..|+++|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            344667778888888887 56666788888888888888887 77888888888888888888876 7788888888888


Q ss_pred             eeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCc
Q 045366          163 ILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNR  241 (289)
Q Consensus       163 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  241 (289)
                      .||+.+|.+.. .+|..|-.+..|+.|++++|.+. .+|...+++++|+.|.+.+|++...+..++.++.|++|++.+|+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            88887777763 35655666667777777777776 66777777777777777777777666566777777777777777


Q ss_pred             ccccCchhhh
Q 045366          242 YHGSLPLDIG  251 (289)
Q Consensus       242 l~~~~~~~~~  251 (289)
                      ++ .+|+++.
T Consensus       185 l~-vlppel~  193 (264)
T KOG0617|consen  185 LT-VLPPELA  193 (264)
T ss_pred             ee-ecChhhh
Confidence            76 6676654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=2.8e-21  Score=144.11  Aligned_cols=182  Identities=21%  Similarity=0.401  Sum_probs=156.4

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.+.+++|.++. .|+.++.+.+|+.|++.+|+++ ..|..++.+++|+.|++.-|++. ..|..|+.+|.|+.||+
T Consensus        33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            678999999999984 6778999999999999999998 68999999999999999999998 99999999999999999


Q ss_pred             cCCcCC-CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          143 SNNKLE-GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      .+|++. ..+|+.|..+..|+.|++++|.+. .+|+.++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|.++-
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence            999886 578999999999999999999998 78899999999999999999987 789999999999999999999998


Q ss_pred             cCCCCCCCC---CCCEEEccCCcccccCchh
Q 045366          222 MFPPINNIS---SLEYIFIHKNRYHGSLPLD  249 (289)
Q Consensus       222 ~~~~~~~~~---~L~~L~l~~n~l~~~~~~~  249 (289)
                      .+|.++++.   +-+...+.+|.....|.+.
T Consensus       188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             cChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence            777654332   2234455556544344433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=4.7e-20  Score=158.34  Aligned_cols=226  Identities=21%  Similarity=0.246  Sum_probs=136.0

Q ss_pred             CeeEEEeccCCCCCC------cCCccccCCCCCcEEEccCCCCcccCCcccccccc---cccccccccccCC----CCCc
Q 045366           63 QRVIGLDLRHQSIRG------FLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK---LQNLTLTNNYFSG----KIPT  129 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~  129 (289)
                      +.++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++.+    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            446777777766552      12345556777777777777776544544544444   7777777777652    1223


Q ss_pred             cccCC-CCCcEEEccCCcCCCC----cchhccCCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc--
Q 045366          130 NLSRC-SNLVKFEASNNKLEGE----IPAEISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR--  198 (289)
Q Consensus       130 ~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~--  198 (289)
                      .+..+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+++.  
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            34455 6777777777777632    233455666777777777777632    233445556777777777776532  


Q ss_pred             --CCccccCCCCCcEEeccCCcCcccCC-C-----CCCCCCCCEEEccCCccccc----CchhhhcCCCCCcEEEccccc
Q 045366          199 --IPSTRSHVRNLISFNVGLNQFSGMFP-P-----INNISSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNN  266 (289)
Q Consensus       199 --~~~~~~~~~~L~~L~l~~n~l~~~~~-~-----~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~  266 (289)
                        ++..+..+++|++|++++|.+.+... .     ....+.|++|++++|.+++.    +.... ..+++|+++++++|.
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~  289 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence              23345566777777777777763111 1     11235777777777777521    12222 245677777887777


Q ss_pred             cccc----cCccccCC-CCCCeEeCcCC
Q 045366          267 LTGS----LQDSLSNT-TNLHKLDINRN  289 (289)
Q Consensus       267 l~~~----~~~~~~~~-~~L~~L~l~~N  289 (289)
                      +...    ....+... +.|+.+|+.+|
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         290 FGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            7744    33344444 67777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.76  E-value=3.5e-17  Score=161.46  Aligned_cols=220  Identities=19%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|+++++.+.. ++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            456666666666543 344455566666666665543333442 455555666666555433355555555555555555


Q ss_pred             cCCcCCCCcchhccCCCCCce---------------------eeeecccccccCChhc----------------------
Q 045366          143 SNNKLEGEIPAEISNLLKFQI---------------------LNIAKNHLKGQLPASI----------------------  179 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~---------------------L~l~~n~~~~~~~~~~----------------------  179 (289)
                      ++|.....+|..+ .+++|++                     |++.+|.+. .+|..+                      
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~  766 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERV  766 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccc
Confidence            5543222333322 2333333                     333333322 112110                      


Q ss_pred             --------cCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCE-----------------
Q 045366          180 --------GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEY-----------------  234 (289)
Q Consensus       180 --------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~-----------------  234 (289)
                              ...++|+.|++++|.....+|..++.+++|+.|++++|...+..|....+++|++                 
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence                    1123566666666655555666677777777777766543222222113444444                 


Q ss_pred             ----EEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          235 ----IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       235 ----L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                          |++++|.++ .+|.++. .+++|+.|++++|.-...+|..+..+++|+.+++++
T Consensus       847 nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        847 NISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             ccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence                455555444 4454443 555666666655422224444455555555555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.75  E-value=2.6e-17  Score=162.35  Aligned_cols=218  Identities=23%  Similarity=0.259  Sum_probs=158.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.+.+.++.+.. +|..+ ...+|+.|++.++.+. .++..+..+++|++|+++++...+.+|. +..+++|++|++
T Consensus       589 ~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        589 PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            468888888887754 56655 4689999999999997 5777888999999999998765446774 788999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc--------------------cCCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG--------------------RIPST  202 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------------------~~~~~  202 (289)
                      ++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|....                    .+|..
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~  743 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN  743 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc
Confidence            9987767889999999999999999976554566543 55666666665553211                    22221


Q ss_pred             c------------------------------cCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhh
Q 045366          203 R------------------------------SHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIG  251 (289)
Q Consensus       203 ~------------------------------~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~  251 (289)
                      +                              ...++|+.|++++|...+..|. +.++++|+.|++++|...+.+|... 
T Consensus       744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-  822 (1153)
T PLN03210        744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-  822 (1153)
T ss_pred             ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence            1                              1124677788887765554554 8899999999999986444666543 


Q ss_pred             cCCC---------------------CCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          252 VNLP---------------------NLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       252 ~~~~---------------------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                       .++                     +++.|+|++|.++ .+|..+..+++|+.|++++
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             -CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence             233                     4555566666665 5677788888888888875

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=1.2e-17  Score=155.70  Aligned_cols=201  Identities=22%  Similarity=0.395  Sum_probs=99.1

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  143 (289)
                      +.+.+++++++++. +|..+.  ++++.|++++|+++ .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            34556666655553 343332  35666666666665 3444332  35666666666655 4444332  245556666


Q ss_pred             CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccC------------------
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH------------------  205 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------------------  205 (289)
                      +|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.++. +|..+..                  
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCcc
Confidence            66555 4444332  34555555555555 3343332  355555555555542 3322211                  


Q ss_pred             -CCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeE
Q 045366          206 -VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL  284 (289)
Q Consensus       206 -~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  284 (289)
                       .++|+.|++++|.+++++..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++ .+|..+.  ..|+.|
T Consensus       323 l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L  393 (754)
T PRK15370        323 LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPENLP--AALQIM  393 (754)
T ss_pred             ccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence             1345555555555554332221  45566666666554 4454332   45666666666655 3443332  245555


Q ss_pred             eCcCC
Q 045366          285 DINRN  289 (289)
Q Consensus       285 ~l~~N  289 (289)
                      ++++|
T Consensus       394 dLs~N  398 (754)
T PRK15370        394 QASRN  398 (754)
T ss_pred             hhccC
Confidence            55544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=9.3e-20  Score=151.96  Aligned_cols=218  Identities=17%  Similarity=0.233  Sum_probs=176.2

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC-C
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN-N  145 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n  145 (289)
                      .++.++.+++. +|..+.  +...+++|..|+|+.+.|.+|..+++|+.|||++|.|+...|++|.+++++..|-+++ |
T Consensus        50 ~VdCr~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            45666666654 344333  4567899999999988888999999999999999999989999999999999988877 8


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc-cccCCCCCcEEeccCCcC-----
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRNLISFNVGLNQF-----  219 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l-----  219 (289)
                      +|+......|+.+..++.|.+.-|++.-....+|..++++..|.+.+|.+. .++. .+..+..++.+.+..|.+     
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence            998666688999999999999999999888889999999999999999887 3443 666666666666655541     


Q ss_pred             --------------------------------------------------------cccCCC--CCCCCCCCEEEccCCc
Q 045366          220 --------------------------------------------------------SGMFPP--INNISSLEYIFIHKNR  241 (289)
Q Consensus       220 --------------------------------------------------------~~~~~~--~~~~~~L~~L~l~~n~  241 (289)
                                                                              .+..|.  |..+++|+.|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                                                                    111222  6677889999999999


Q ss_pred             ccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          242 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       242 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ++ .|.+..|.+...+++|.|..|++...-...|.++..|+.|+|.+|
T Consensus       286 i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  286 IT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN  332 (498)
T ss_pred             cc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence            98 666677778889999999999988666678889999999998887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.2e-18  Score=159.53  Aligned_cols=203  Identities=20%  Similarity=0.370  Sum_probs=140.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|++++|.++. +|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|++|++
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            568888999888875 454443  57888888888877 3555442  35667777777666 5555443  35666666


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccc--------------------cCChhccCCCCCCEEEccCccCcccCCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG--------------------QLPASIGNLSTLQEINVNGNRLSGRIPST  202 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  202 (289)
                      ++|++. .+|..+.  ++|++|++++|++..                    .+|..+  .++|+.|++++|.++. +|..
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~  343 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPAS  343 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChh
Confidence            666665 3444332  356666666655542                    122211  2578888899888874 6665


Q ss_pred             ccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc----cCC
Q 045366          203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL----SNT  278 (289)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~----~~~  278 (289)
                      +.  ++|+.|++++|.+..++..+  .++|++|++++|+++ .+|..+.   ..|+.|++++|++. .+|..+    ..+
T Consensus       344 l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        344 LP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             hc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence            54  69999999999998654434  268999999999998 7887765   47999999999998 556544    456


Q ss_pred             CCCCeEeCcCC
Q 045366          279 TNLHKLDINRN  289 (289)
Q Consensus       279 ~~L~~L~l~~N  289 (289)
                      +++..|++.+|
T Consensus       415 ~~l~~L~L~~N  425 (754)
T PRK15370        415 PQPTRIIVEYN  425 (754)
T ss_pred             CCccEEEeeCC
Confidence            88899999887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=3.6e-17  Score=151.98  Aligned_cols=74  Identities=24%  Similarity=0.288  Sum_probs=54.2

Q ss_pred             CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeC
Q 045366          207 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI  286 (289)
Q Consensus       207 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  286 (289)
                      ++|+.|++++|.+++++..   .++|+.|++++|.++ .+|..    +.+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            3566777777776654332   246777888888776 46532    246788888888888 78888999999999999


Q ss_pred             cCC
Q 045366          287 NRN  289 (289)
Q Consensus       287 ~~N  289 (289)
                      ++|
T Consensus       453 s~N  455 (788)
T PRK15387        453 EGN  455 (788)
T ss_pred             CCC
Confidence            988

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2.3e-19  Score=154.03  Aligned_cols=227  Identities=19%  Similarity=0.216  Sum_probs=172.2

Q ss_pred             CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCcc------cCCcccccccccccccccccccCCCCCcccc
Q 045366           63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRA------EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS  132 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  132 (289)
                      ..++.++++++.++..    ++..+...+.+++++++++.+.+      .++..+..+++|++|++++|.+.+..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            4588999999988542    55567778889999999998762      2344567788999999999999765555555


Q ss_pred             CCCC---CcEEEccCCcCCC----CcchhccCC-CCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc--
Q 045366          133 RCSN---LVKFEASNNKLEG----EIPAEISNL-LKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR--  198 (289)
Q Consensus       133 ~l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~--  198 (289)
                      .+.+   |++|++++|.++.    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.  
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            4444   9999999999873    223445667 8999999999998843    344567778999999999998742  


Q ss_pred             --CCccccCCCCCcEEeccCCcCcccC-----CCCCCCCCCCEEEccCCcccccCchhhhcC----CCCCcEEEcccccc
Q 045366          199 --IPSTRSHVRNLISFNVGLNQFSGMF-----PPINNISSLEYIFIHKNRYHGSLPLDIGVN----LPNLRFFIISGNNL  267 (289)
Q Consensus       199 --~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~Ls~n~l  267 (289)
                        ++..+...++|+.|++++|.+.+..     ..+..+++|++|++++|.+++.....+...    .+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              3344556689999999999986332     126678899999999999875434343323    37999999999999


Q ss_pred             cc----ccCccccCCCCCCeEeCcCC
Q 045366          268 TG----SLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       268 ~~----~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ++    .+.+.+..+++|+++++++|
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCC
Confidence            73    34456677899999999987

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-19  Score=163.50  Aligned_cols=218  Identities=23%  Similarity=0.350  Sum_probs=169.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      +.++.|+.++|.++...+...  -.+|+.+++++|+++ .+|+.+..+.+|+.++..+|.+. .+|..+....+|+.|..
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            566677777777664322221  256888888888887 46677788888888888888886 78888888888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhcc-------------------------CCCCCCEEEccCccCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG-------------------------NLSTLQEINVNGNRLSG  197 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~~~~L~~L~l~~n~~~~  197 (289)
                      .+|.++ .+|.....+..|++|++..|.+....+..+.                         .++.|+.|++.+|.+++
T Consensus       295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            888887 5666677788899999998887632111111                         12346777888888877


Q ss_pred             cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc
Q 045366          198 RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS  276 (289)
Q Consensus       198 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  276 (289)
                      ..-..+-++.+|+.|+|++|.+..++.. +.+++.|++|+++||+++ .+|..+. .++.|++|..-+|++. ..| .+.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-hhh
Confidence            6666777888999999999999877766 888899999999999998 8888877 8899999999999988 777 699


Q ss_pred             CCCCCCeEeCcCC
Q 045366          277 NTTNLHKLDINRN  289 (289)
Q Consensus       277 ~~~~L~~L~l~~N  289 (289)
                      .++.|+.+|+|.|
T Consensus       450 ~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCN  462 (1081)
T ss_pred             hcCcceEEecccc
Confidence            9999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1.6e-15  Score=141.10  Aligned_cols=191  Identities=25%  Similarity=0.288  Sum_probs=126.8

Q ss_pred             CeeEEEeccCCCCCCcCC--ccccC--------------CCCCcEEEccCCCCcccCCcccccccccccccccccccCCC
Q 045366           63 QRVIGLDLRHQSIRGFLS--PFVGY--------------LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK  126 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~--~~~~~--------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  126 (289)
                      ++++.|++++|.++...+  +.+..              ...|+.|++++|+++. +|.   ..++|++|++++|.+++ 
T Consensus       242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence            677888888877665422  11111              1235555666666652 333   23567777777777763 


Q ss_pred             CCccccC-----------------CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366          127 IPTNLSR-----------------CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN  189 (289)
Q Consensus       127 ~~~~~~~-----------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  189 (289)
                      +|.....                 ..+|++|++++|++. .+|..   .++|+.|++++|.+.. +|..   ..+|+.|+
T Consensus       317 Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~Ld  388 (788)
T PRK15387        317 LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELI  388 (788)
T ss_pred             CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEE
Confidence            3321110                 125666666666665 33432   2356666666666663 4432   35789999


Q ss_pred             ccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      +++|.+++ +|..   .++|+.|++++|.+++++..   ..+|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++
T Consensus       389 Ls~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~-~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        389 VSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHh-hccCCCeEECCCCCCCc
Confidence            99999884 5543   36899999999999976432   347889999999998 8998877 89999999999999998


Q ss_pred             ccCccc
Q 045366          270 SLQDSL  275 (289)
Q Consensus       270 ~~~~~~  275 (289)
                      ..+..+
T Consensus       460 ~~~~~L  465 (788)
T PRK15387        460 RTLQAL  465 (788)
T ss_pred             hHHHHH
Confidence            877766

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=3.2e-14  Score=131.95  Aligned_cols=141  Identities=31%  Similarity=0.543  Sum_probs=111.1

Q ss_pred             cChHhHHHHHh---------cCCCCCCCCCC-----CcccceeCCCC----CeeEEEeccCCCCCCcCCccccCCCCCcE
Q 045366           30 ANEADRLSLLA---------MNSWNNSINLC-----QWTGVTCGHRH----QRVIGLDLRHQSIRGFLSPFVGYLSFLRS   91 (289)
Q Consensus        30 ~~~~~~~~l~~---------~~~w~~~~~~c-----~~~~~~c~~~~----~~v~~l~l~~~~~~~~~~~~~~~l~~L~~   91 (289)
                      ..+.|..|+.+         ..+|..  +.|     .|.|+.|....    ..++.|+|+++.+.+.+|+.+..+++|+.
T Consensus       369 t~~~~~~aL~~~k~~~~~~~~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPLRFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             cCchHHHHHHHHHHhcCCcccCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            34556666654         126864  345     69999995321    25888999999999888988999999999


Q ss_pred             EEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCC-CCCceeeeeccc
Q 045366           92 INLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNL-LKFQILNIAKNH  170 (289)
Q Consensus        92 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~  170 (289)
                      |+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+... .++..+++.+|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999988888888889999999999999988888888888899999999988888888877653 456677777765


Q ss_pred             cc
Q 045366          171 LK  172 (289)
Q Consensus       171 ~~  172 (289)
                      ..
T Consensus       527 ~l  528 (623)
T PLN03150        527 GL  528 (623)
T ss_pred             cc
Confidence            43

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.48  E-value=1.5e-15  Score=132.39  Aligned_cols=180  Identities=25%  Similarity=0.406  Sum_probs=114.9

Q ss_pred             CCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366           86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN  165 (289)
Q Consensus        86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  165 (289)
                      ++.-...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+++++.|+++ ..|..++.++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344455666666665 46666666666677777766666 66666666666777777777666 5566665554 56666


Q ss_pred             eecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCccccc
Q 045366          166 IAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS  245 (289)
Q Consensus       166 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  245 (289)
                      +++|+++ .+|..++....|.+++.+.|.+. .+|..++++.+|+.+.+..|++...++.+.. -.|..||+++|++. .
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCcee-e
Confidence            6666666 55666666666667777776665 5666666666777777766666655555442 25666777777766 6


Q ss_pred             CchhhhcCCCCCcEEEccccccccccCccc
Q 045366          246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSL  275 (289)
Q Consensus       246 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  275 (289)
                      +|-.+. ++.+|++|.|.+|.+. ..|..+
T Consensus       226 iPv~fr-~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  226 LPVDFR-KMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             cchhhh-hhhhheeeeeccCCCC-CChHHH
Confidence            666655 6677777777777666 444333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.43  E-value=1.5e-13  Score=121.63  Aligned_cols=180  Identities=32%  Similarity=0.514  Sum_probs=107.1

Q ss_pred             CCCCCcEEEccCCCCcccCCccccccc-ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCce
Q 045366           85 YLSFLRSINLVNNSLRAEIPHEVGNLF-KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQI  163 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  163 (289)
                      .++.++.|++.+|++. .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .++...+..+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence            3455666666666666 3444444443 6667777666666 55555666666666777666665 44555446666666


Q ss_pred             eeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCccc
Q 045366          164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  243 (289)
                      |++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+...+..+..++.+++|++++|.++
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            666666666 44444444445666666666433 3445556666666666666666554334555666667777766665


Q ss_pred             ccCchhhhcCCCCCcEEEccccccccccC
Q 045366          244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQ  272 (289)
Q Consensus       244 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  272 (289)
                       .++. +. ...+++.|++++|.+....+
T Consensus       269 -~i~~-~~-~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 -SISS-LG-SLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -cccc-cc-ccCccCEEeccCccccccch
Confidence             3433 33 56666677776666664444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=3.6e-15  Score=130.11  Aligned_cols=172  Identities=23%  Similarity=0.365  Sum_probs=154.7

Q ss_pred             cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366          109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI  188 (289)
Q Consensus       109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  188 (289)
                      .+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++.+..|.++|++.|+++ ..|..+..++ |+.+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3555668899999998 99998888889999999999986 88999999999999999999999 6777776665 8999


Q ss_pred             EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      -+++|+++ .+|..++..++|..+|.+.|.+...++.+.++.+|+.|.+.+|.+. .+|++..  .-.|..||+|+|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee
Confidence            99999998 7888899999999999999999988777899999999999999998 7888876  455899999999999


Q ss_pred             cccCccccCCCCCCeEeCcCC
Q 045366          269 GSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~N  289 (289)
                       .+|-.|.++..|++|-|++|
T Consensus       225 -~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             -ecchhhhhhhhheeeeeccC
Confidence             99999999999999999988

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.40  E-value=2.9e-13  Score=119.71  Aligned_cols=190  Identities=31%  Similarity=0.516  Sum_probs=111.1

Q ss_pred             EEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCC-CCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366           91 SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS-NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN  169 (289)
Q Consensus        91 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  169 (289)
                      .+.+..+.+.. ....+..++.++.|++.+|.+. .++....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555531 2223344466666777666666 5555555553 6667777776665 44455666667777777776


Q ss_pred             cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchh
Q 045366          170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLD  249 (289)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  249 (289)
                      ++. .+|......+.|+.+++++|.+. .+|........|+++.+++|.+...+..+.+..++..+.+.+|++. .++..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence            666 34444446666666777776666 4454444445566666666654444444555566666666666665 22333


Q ss_pred             hhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          250 IGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       250 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +. .++.++.|++++|+++ .++. ++...+++.|++++|
T Consensus       251 ~~-~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         251 IG-NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hc-cccccceecccccccc-cccc-ccccCccCEEeccCc
Confidence            33 5566677777777666 3333 666666666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=1.1e-13  Score=114.29  Aligned_cols=227  Identities=22%  Similarity=0.309  Sum_probs=155.0

Q ss_pred             CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCC---cccCCcc-------cccccccccccccccccCCCCC
Q 045366           63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSL---RAEIPHE-------VGNLFKLQNLTLTNNYFSGKIP  128 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~  128 (289)
                      ..++.|++++|.+...    +.+.+.+.+.|+..++++...   ...+|.+       +-+.++|++||||+|-+.-..+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            5688999999988642    445666777888888876532   2234433       3456789999999988764433


Q ss_pred             cc----ccCCCCCcEEEccCCcCCCCc-------------chhccCCCCCceeeeeccccccc----CChhccCCCCCCE
Q 045366          129 TN----LSRCSNLVKFEASNNKLEGEI-------------PAEISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQE  187 (289)
Q Consensus       129 ~~----~~~l~~L~~L~l~~n~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~  187 (289)
                      ..    +.++..|++|++.+|.+...-             ...+++-+.|+.+..+.|++...    +...|...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            33    356788899999888876221             12234567888888888887643    2344667788888


Q ss_pred             EEccCccCcc----cCCccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchh----hhcCC
Q 045366          188 INVNGNRLSG----RIPSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLD----IGVNL  254 (289)
Q Consensus       188 L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~  254 (289)
                      +.+..|.+..    .+..++..+++|+.|||.+|.++..     -.++..+++|++|++++|.++..-...    +-...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            8888887742    1234577888999999988887521     112566678889999888887443333    23456


Q ss_pred             CCCcEEEccccccccc----cCccccCCCCCCeEeCcCC
Q 045366          255 PNLRFFIISGNNLTGS----LQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       255 ~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~N  289 (289)
                      |.|+.|.+.+|.++-.    +...+...+.|+.|+|++|
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            8888999998888732    2334566788888888876

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=7.1e-12  Score=116.43  Aligned_cols=108  Identities=31%  Similarity=0.557  Sum_probs=86.3

Q ss_pred             CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366           88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA  167 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  167 (289)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccccccCChhccCC-CCCCEEEccCccC
Q 045366          168 KNHLKGQLPASIGNL-STLQEINVNGNRL  195 (289)
Q Consensus       168 ~n~~~~~~~~~~~~~-~~L~~L~l~~n~~  195 (289)
                      +|.+.+.+|..+... .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            888888888776653 4566777777753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.3e-13  Score=115.51  Aligned_cols=184  Identities=17%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             CCCCCcEEEccCCCCcccCC-cccccccccccccccccccCC--CCCccccCCCCCcEEEccCCcCCCCcch-hccCCCC
Q 045366           85 YLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSG--KIPTNLSRCSNLVKFEASNNKLEGEIPA-EISNLLK  160 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~  160 (289)
                      ++.+|+.+.|++..+..... .....+++++.|||++|-+..  .+......+|+|+.|+++.|++...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34566666666666642211 234456667777777665542  1223334566677777777666422111 1124566


Q ss_pred             Cceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEc
Q 045366          161 FQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFI  237 (289)
Q Consensus       161 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l  237 (289)
                      |+.|.+++|+++.. +......+|+|+.|++.+|..-.........+..|++|||++|.+.....  ....++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            66777777666532 22233456666777776664222223334455566677776666654432  2556666666666


Q ss_pred             cCCccccc-Cchh----hhcCCCCCcEEEccccccc
Q 045366          238 HKNRYHGS-LPLD----IGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       238 ~~n~l~~~-~~~~----~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +.+.+... .|+.    .-..+++|++|+++.|++.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            66665421 1111    0124566777777776664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.4e-11  Score=95.15  Aligned_cols=82  Identities=28%  Similarity=0.473  Sum_probs=15.0

Q ss_pred             ccccccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhc-cCCCCCCE
Q 045366          110 LFKLQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQE  187 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~  187 (289)
                      ..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.+.. ++ .+..++.|+.|++++|.++.. .+.+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            344555555555554 221 232 34455555555555542 21 234444555555555555422 2122 23444444


Q ss_pred             EEccCccCc
Q 045366          188 INVNGNRLS  196 (289)
Q Consensus       188 L~l~~n~~~  196 (289)
                      |++++|.+.
T Consensus        93 L~L~~N~I~  101 (175)
T PF14580_consen   93 LYLSNNKIS  101 (175)
T ss_dssp             EE-TTS---
T ss_pred             EECcCCcCC
Confidence            444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4.9e-12  Score=107.52  Aligned_cols=204  Identities=20%  Similarity=0.253  Sum_probs=141.3

Q ss_pred             CeeEEEeccCCCCCCcC-CccccCCCCCcEEEccCCCCccc--CCcccccccccccccccccccCCCCCcc-ccCCCCCc
Q 045366           63 QRVIGLDLRHQSIRGFL-SPFVGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLV  138 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~  138 (289)
                      ..++.+.|+...+...- ......|++++.|+|++|-+..-  +..-...+++|+.|+++.|++....... -..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            45677777766654321 13566789999999999877632  2233457899999999999886322221 23567899


Q ss_pred             EEEccCCcCCC-CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC--ccccCCCCCcEEecc
Q 045366          139 KFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP--STRSHVRNLISFNVG  215 (289)
Q Consensus       139 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~  215 (289)
                      .|.++.|.++- .+......+|+|+.|++.+|............+..|++|++++|++.. .+  ...+.++.|+.|+++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcc
Confidence            99999998872 333445678999999999985332333334567789999999998763 33  456788899999999


Q ss_pred             CCcCcccCCC-------CCCCCCCCEEEccCCcccccCc--hhhhcCCCCCcEEEcccccccc
Q 045366          216 LNQFSGMFPP-------INNISSLEYIFIHKNRYHGSLP--LDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       216 ~n~l~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      .+.+..+-.+       ....++|++|++..|++. ..+  ..+. .+++|+.|....|.++.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~-~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLR-TLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhh-ccchhhhhhcccccccc
Confidence            9888654222       256688999999999985 222  2333 56778888888887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=7.3e-11  Score=91.20  Aligned_cols=127  Identities=20%  Similarity=0.354  Sum_probs=52.1

Q ss_pred             cCCCCCceeeeecccccccCChhcc-CCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCC-CCCCCCC
Q 045366          156 SNLLKFQILNIAKNHLKGQLPASIG-NLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLE  233 (289)
Q Consensus       156 ~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~  233 (289)
                      .+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++. +. .+..+++|++|++++|.++.....+ ..+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            355578999999999984 3 2444 57899999999999984 43 5788999999999999998764433 3578999


Q ss_pred             EEEccCCcccccCchhhhcCCCCCcEEEcccccccccc---CccccCCCCCCeEeC
Q 045366          234 YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL---QDSLSNTTNLHKLDI  286 (289)
Q Consensus       234 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~~~~L~~L~l  286 (289)
                      +|++++|++.+.-.-.....+++|+.|++.+|.++...   ...+..+|+|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            99999999973322233347899999999999998432   245788999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=2.5e-11  Score=98.95  Aligned_cols=183  Identities=20%  Similarity=0.293  Sum_probs=108.9

Q ss_pred             CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC---CCC--------------------ccccCCC
Q 045366           79 LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG---KIP--------------------TNLSRCS  135 (289)
Q Consensus        79 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~--------------------~~~~~l~  135 (289)
                      +|-.+.-+++|+.+.++++.-..+.. --..-+.|+++.+.+..++.   .+|                    .....+.
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            34444556777777777765442211 11123566666666554431   111                    1122334


Q ss_pred             CCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEecc
Q 045366          136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVG  215 (289)
Q Consensus       136 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  215 (289)
                      .|+++|+++|.++ .+.++..-.|.++.|++++|++...  ..+..+++|++||+++|.++ ...++-.++-+.++|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            5777777777776 5666666777777777777777622  22566777777777777766 444555566677777777


Q ss_pred             CCcCcccCCCCCCCCCCCEEEccCCcccccCc--hhhhcCCCCCcEEEcccccccc
Q 045366          216 LNQFSGMFPPINNISSLEYIFIHKNRYHGSLP--LDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       216 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      .|.+... ..+.++-+|..||+++|++. .+.  ..++ ++|-|+.+.|.+|.+.+
T Consensus       361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG-~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIETL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIG-NLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhh-hhhHhhhhheeccccccchh-hHHHhcccc-cccHHHHHhhcCCCccc
Confidence            7766532 23455566777777777775 222  2344 66777777777777663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=5.5e-11  Score=96.97  Aligned_cols=180  Identities=14%  Similarity=0.186  Sum_probs=122.3

Q ss_pred             CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCC---Ccchh--------------------ccCCC
Q 045366          103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG---EIPAE--------------------ISNLL  159 (289)
Q Consensus       103 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~--------------------~~~l~  159 (289)
                      +|-.+.-+.+|+.+.++.+.-. .+.+....-|.|+++...+..++.   .+|..                    +....
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            3444455778888888877543 222222334677777776654431   11211                    12234


Q ss_pred             CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccC
Q 045366          160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHK  239 (289)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  239 (289)
                      .|+++|+++|.++ .+.+...-.|.++.|++++|.+.. + ..++.+++|+.||+++|.++.+...-.++-++++|.+++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            6888999999888 566667778889999999998873 3 347888899999999998876554434556788899999


Q ss_pred             CcccccCchhhhcCCCCCcEEEcccccccccc-CccccCCCCCCeEeCcCC
Q 045366          240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL-QDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       240 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~N  289 (289)
                      |.+. .+ ..+. .+-+|..||+++|++.... -..++++|-|+++.|.+|
T Consensus       362 N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  362 NKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            9886 22 2333 5678889999999987322 246888888888887776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=3.7e-11  Score=99.59  Aligned_cols=209  Identities=17%  Similarity=0.222  Sum_probs=151.5

Q ss_pred             ccccCCCCCcEEEccCCCCccc----CCcccccccccccccccccc---cCCCCC-------ccccCCCCCcEEEccCCc
Q 045366           81 PFVGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNY---FSGKIP-------TNLSRCSNLVKFEASNNK  146 (289)
Q Consensus        81 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~l~~n~  146 (289)
                      +.+..+..++.+++++|.+...    +...+.+.+.|+..++++=-   ....+|       .++.++++|++++|+.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3455678899999999998632    44556777889999887632   112233       345677899999999999


Q ss_pred             CCCCcch----hccCCCCCceeeeeccccccc-------------CChhccCCCCCCEEEccCccCcccC----CccccC
Q 045366          147 LEGEIPA----EISNLLKFQILNIAKNHLKGQ-------------LPASIGNLSTLQEINVNGNRLSGRI----PSTRSH  205 (289)
Q Consensus       147 ~~~~~~~----~~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~  205 (289)
                      +....++    .++++..|++|++.+|++...             .-.....-++|+.+..+.|++....    ...+..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            8754443    346789999999999988622             1123455678999999999986432    345667


Q ss_pred             CCCCcEEeccCCcCc--ccCC---CCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEEccccccccccCccc--
Q 045366          206 VRNLISFNVGLNQFS--GMFP---PINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIISGNNLTGSLQDSL--  275 (289)
Q Consensus       206 ~~~L~~L~l~~n~l~--~~~~---~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~--  275 (289)
                      .+.|+.+.+..|.+.  |...   .+..+++|+.|++.+|-++-.-..   ...+.+++|+.|++++|.+.......|  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            789999999999885  3311   178999999999999988622222   223467899999999999985443322  


Q ss_pred             ---cCCCCCCeEeCcCC
Q 045366          276 ---SNTTNLHKLDINRN  289 (289)
Q Consensus       276 ---~~~~~L~~L~l~~N  289 (289)
                         ...|+|+.|++.+|
T Consensus       264 al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHhccCCCCceeccCcc
Confidence               45889999999887

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=2.6e-10  Score=72.75  Aligned_cols=58  Identities=40%  Similarity=0.519  Sum_probs=32.8

Q ss_pred             CCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       231 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +|++|++++|+++ .+|+..|.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4555555555555 455544445556666666666555444555566666666665554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.4e-10  Score=72.21  Aligned_cols=59  Identities=36%  Similarity=0.457  Sum_probs=32.3

Q ss_pred             CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366           88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  146 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  146 (289)
                      +|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444455555555555555555554444455555555555555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=6.8e-11  Score=105.11  Aligned_cols=175  Identities=21%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366           83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ  162 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  162 (289)
                      +..++.++.+++.+|++... ...+..+++|++|++++|.|+...  .+..++.|+.|++.+|.+..  ...+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhh
Confidence            34445555555555555422 111344555555555555554211  13333445555555555441  12233345555


Q ss_pred             eeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCC--CCCEEEccC
Q 045366          163 ILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS--SLEYIFIHK  239 (289)
Q Consensus       163 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~  239 (289)
                      .+++++|++...-+ . ...+.+++.+++++|.+..  ...+.....+..+++..|.++.+-.. ....  +|+.+++++
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l-~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL-NELVMLHLRELYLSG  241 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc-ccchhHHHHHHhccc
Confidence            55555555542222 1 2344455555555554431  11222222333334444444432211 1111  256666666


Q ss_pred             CcccccCchhhhcCCCCCcEEEccccccc
Q 045366          240 NRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       240 n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      |.+. .++..+- .+..+..|++.+|++.
T Consensus       242 n~i~-~~~~~~~-~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  242 NRIS-RSPEGLE-NLKNLPVLDLSSNRIS  268 (414)
T ss_pred             Cccc-ccccccc-ccccccccchhhcccc
Confidence            6665 3322222 5566667777766665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=1.7e-10  Score=102.64  Aligned_cols=127  Identities=25%  Similarity=0.306  Sum_probs=55.6

Q ss_pred             CCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeee
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNI  166 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  166 (289)
                      ..++.+.++.|.+.. +-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+...  .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            444444444444432 1222444455555555555554 22222444455555555555554221  2334444555555


Q ss_pred             ecccccccCChhccCCCCCCEEEccCccCcccCC-ccccCCCCCcEEeccCCcCc
Q 045366          167 AKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP-STRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       167 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~  220 (289)
                      .+|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++++|.+.
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            55555421  123334455555555555442211 1 234445555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=3.8e-09  Score=100.93  Aligned_cols=107  Identities=22%  Similarity=0.394  Sum_probs=74.1

Q ss_pred             CeeEEEeccCCC--CCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEE
Q 045366           63 QRVIGLDLRHQS--IRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF  140 (289)
Q Consensus        63 ~~v~~l~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  140 (289)
                      ++++++-+..+.  +.....++|..++.|+.|||++|.--+.+|..++++-+|++|+++++.+. .+|..+..+..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            456666666664  44444455777777777777776555567777777777777777777777 777777777777777


Q ss_pred             EccCCcCCCCcchhccCCCCCceeeeeccc
Q 045366          141 EASNNKLEGEIPAEISNLLKFQILNIAKNH  170 (289)
Q Consensus       141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  170 (289)
                      ++..+.....++.....+.+|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            777766554556666667777777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=7e-09  Score=99.13  Aligned_cols=149  Identities=19%  Similarity=0.243  Sum_probs=107.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC--CcccCCcccccccccccccccccccCCCCCccccCCCCCcEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS--LRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF  140 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  140 (289)
                      ..++++.+-++.+... +.. ..++.|+.|-+..|.  +....+..|..++.|++||+++|.--+.+|..++.+.+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3456666666655422 221 233478899999886  543444457789999999999887666899999999999999


Q ss_pred             EccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccC--cccCCccccCCCCCcEEec
Q 045366          141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL--SGRIPSTRSHVRNLISFNV  214 (289)
Q Consensus       141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~L~~L~l  214 (289)
                      +++++.+. .+|..+.++..|.+|++..+.....+|.....+.+|+.|.+.....  +...-..+..+.+|+.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999998 8899999999999999998876655666667799999998876542  2222233444555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=2.1e-09  Score=87.70  Aligned_cols=199  Identities=18%  Similarity=0.151  Sum_probs=102.6

Q ss_pred             CCCCcEEEccCCCCcc--cCCcccccccccccccccccccCCCCCccc-cCCCCCcEEEccCCcCC-CCcchhccCCCCC
Q 045366           86 LSFLRSINLVNNSLRA--EIPHEVGNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLE-GEIPAEISNLLKF  161 (289)
Q Consensus        86 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L  161 (289)
                      ++++++++|.+|.+++  .+..-+.++|.|++|+++.|.+.. .-+.+ ....+|+.|-+.+..+. ......+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4556666666666652  122223456666666666666552 11122 23345666666555443 1122333455556


Q ss_pred             ceeeeeccccccc--CChhccCC-CCCCEEEccCccCcc--cCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCE
Q 045366          162 QILNIAKNHLKGQ--LPASIGNL-STLQEINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEY  234 (289)
Q Consensus       162 ~~L~l~~n~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~  234 (289)
                      +.|+++.|.+...  ........ +.+++++..+|....  ..-..-..+|++..+.+..|.+......  ....+.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            6666655533211  00111111 133334333332110  0001112346777777777766533322  556667778


Q ss_pred             EEccCCcccccCchhhhcCCCCCcEEEccccccccccCc------cccCCCCCCeEe
Q 045366          235 IFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD------SLSNTTNLHKLD  285 (289)
Q Consensus       235 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------~~~~~~~L~~L~  285 (289)
                      |+++.+++.+.-.-+-..+++++..|.++++.+.+.+..      .++.+++++.|+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            888888875332222234889999999999988754321      357788887775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.62  E-value=4.4e-10  Score=101.49  Aligned_cols=180  Identities=21%  Similarity=0.227  Sum_probs=94.9

Q ss_pred             CccccCCCCCcEEEccCCCCcccCCcccccc-cccccccccccccC----------CCCCccccCCCCCcEEEccCCcCC
Q 045366           80 SPFVGYLSFLRSINLVNNSLRAEIPHEVGNL-FKLQNLTLTNNYFS----------GKIPTNLSRCSNLVKFEASNNKLE  148 (289)
Q Consensus        80 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~~~  148 (289)
                      |-.+..+..|+.|.+.++.+...  ..+..+ ..|++|.-.+ .+.          |.+..++ .+-.|...+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            44566677888888888877521  111111 1233322111 110          1111111 1224556666666665


Q ss_pred             CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCC
Q 045366          149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN  228 (289)
Q Consensus       149 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  228 (289)
                       .+..++.-++.++.|++++|+++...  .+..++.|++||+++|.+. .+|..-..-.+|..|.+.+|.++.. ..+.+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~  252 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL-RGIEN  252 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh-hhHHh
Confidence             55566666677777777777776432  5666777777777777766 3332211112466667777766532 22455


Q ss_pred             CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +.+|..||+++|-+.+.-.-...-.+..|+.|.|.+|.+.
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6666667777766653211111113455666666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=6.2e-10  Score=90.75  Aligned_cols=176  Identities=18%  Similarity=0.251  Sum_probs=77.9

Q ss_pred             CCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc-CCC-CcchhccCCCCCcee
Q 045366           88 FLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LEG-EIPAEISNLLKFQIL  164 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L  164 (289)
                      .|+.|||+...++.. .-..+..+.+|+.|.+.++++...+...+.+-.+|+.++++.+. ++. ...-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355555555555422 22224445555555555555555555555555555556555542 221 111223455555555


Q ss_pred             eeecccccccCC-hhcc-CCCCCCEEEccCccC--cc-cCCccccCCCCCcEEeccCCcC-cc-cCCCCCCCCCCCEEEc
Q 045366          165 NIAKNHLKGQLP-ASIG-NLSTLQEINVNGNRL--SG-RIPSTRSHVRNLISFNVGLNQF-SG-MFPPINNISSLEYIFI  237 (289)
Q Consensus       165 ~l~~n~~~~~~~-~~~~-~~~~L~~L~l~~n~~--~~-~~~~~~~~~~~L~~L~l~~n~l-~~-~~~~~~~~~~L~~L~l  237 (289)
                      +++.+.+....- ..+. --++|+.|+++|+.-  .. .+.--...+++|..|||++|.. +. ....+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            555554432111 1111 123445555555431  10 0111123455666666655432 21 1112455555666666


Q ss_pred             cCCcccccCchhh--hcCCCCCcEEEcccc
Q 045366          238 HKNRYHGSLPLDI--GVNLPNLRFFIISGN  265 (289)
Q Consensus       238 ~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n  265 (289)
                      ++|..  .+|..+  +...|+|.+||+-++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            65543  223221  124455666655544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=7.6e-09  Score=84.49  Aligned_cols=201  Identities=18%  Similarity=0.140  Sum_probs=128.0

Q ss_pred             CeeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC-CCCccccCCCCCcE
Q 045366           63 QRVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG-KIPTNLSRCSNLVK  139 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  139 (289)
                      .+|..+||.+|.|+..  +...+.++++|+.|+++.|++...+...-....+|++|-|.++.+.- ..-..+..+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            6899999999998853  45567889999999999999974433222457799999999887652 23334556888899


Q ss_pred             EEccCCcCCC--Ccchhcc-CCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc-CCccccCCCCCcEEe
Q 045366          140 FEASNNKLEG--EIPAEIS-NLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR-IPSTRSHVRNLISFN  213 (289)
Q Consensus       140 L~l~~n~~~~--~~~~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~  213 (289)
                      |+++.|.+..  .....+. .-+.++++....|....  ..-..-+.++++..+-+..|.+... ....+..+|.+..|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            9998884421  1111111 12345555555554321  1111223466777777777766422 234455666777788


Q ss_pred             ccCCcCcccCCC--CCCCCCCCEEEccCCcccccCchh-----hhcCCCCCcEEEcc
Q 045366          214 VGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLD-----IGVNLPNLRFFIIS  263 (289)
Q Consensus       214 l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~-----~~~~~~~L~~L~Ls  263 (289)
                      |+.+++..+...  +.+++.+..|.++++.+.+.+.-.     +...+++++.|+=+
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            888888766543  777888888888888776444321     11256666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.50  E-value=1.2e-08  Score=82.35  Aligned_cols=207  Identities=17%  Similarity=0.183  Sum_probs=140.6

Q ss_pred             CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCc---ccCC-------cccccccccccccccccccCCCCC
Q 045366           63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLR---AEIP-------HEVGNLFKLQNLTLTNNYFSGKIP  128 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~  128 (289)
                      ..++.+||++|.|...    +...+.+-.+|+..+++.-...   +.++       .++-+++.|+..+|++|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5678999999998753    4445666678888887764332   1222       345678999999999999886666


Q ss_pred             cc----ccCCCCCcEEEccCCcCCCCcch-------------hccCCCCCceeeeecccccccCC----hhccCCCCCCE
Q 045366          129 TN----LSRCSNLVKFEASNNKLEGEIPA-------------EISNLLKFQILNIAKNHLKGQLP----ASIGNLSTLQE  187 (289)
Q Consensus       129 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~  187 (289)
                      ..    +.+-+.|..|.+.+|.+......             ..++-|.|+......|++.....    ..+..-..|+.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            54    45667899999999987522221             22456889999999998873221    12333358889


Q ss_pred             EEccCccCcccC-----CccccCCCCCcEEeccCCcCcccCC-----CCCCCCCCCEEEccCCcccccCchhhhc-----
Q 045366          188 INVNGNRLSGRI-----PSTRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHKNRYHGSLPLDIGV-----  252 (289)
Q Consensus       188 L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----  252 (289)
                      +.+..|.+....     -..+..+.+|+.||+++|.++..-.     .+..++.|++|.+..|-++..-...++.     
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~  269 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK  269 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence            999988875221     1234567899999999998862211     1556667899999998887554444332     


Q ss_pred             CCCCCcEEEcccccccc
Q 045366          253 NLPNLRFFIISGNNLTG  269 (289)
Q Consensus       253 ~~~~L~~L~Ls~n~l~~  269 (289)
                      ..|+|..|...+|...+
T Consensus       270 ~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         270 FVPNLMPLPGDYNERRG  286 (388)
T ss_pred             cCCCccccccchhhhcC
Confidence            35888888888887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=5.9e-10  Score=90.87  Aligned_cols=178  Identities=19%  Similarity=0.141  Sum_probs=129.3

Q ss_pred             CeeEEEeccCCCCCCc-CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccc-cCC-CCCccccCCCCCcE
Q 045366           63 QRVIGLDLRHQSIRGF-LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSG-KIPTNLSRCSNLVK  139 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~  139 (289)
                      .+++.+||+...|+.. +-..+..+.+|+.|.+.++.+.+.+...+.+-.+|+.|+++.+. ++. ...-.+.++..|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            5688899998877642 44567788999999999999998888888899999999999875 431 12233578899999


Q ss_pred             EEccCCcCCCCcchhc-c-CCCCCceeeeeccccc---ccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEe
Q 045366          140 FEASNNKLEGEIPAEI-S-NLLKFQILNIAKNHLK---GQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFN  213 (289)
Q Consensus       140 L~l~~n~~~~~~~~~~-~-~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~  213 (289)
                      |+++++.+.......+ . --++|+.|++++..-.   ..+.--...+++|.+||+++|. ++......+.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9999998864332221 2 2357888999886533   1122224688999999999976 4433334677889999999


Q ss_pred             ccCCcCcc--cCCCCCCCCCCCEEEccCC
Q 045366          214 VGLNQFSG--MFPPINNISSLEYIFIHKN  240 (289)
Q Consensus       214 l~~n~l~~--~~~~~~~~~~L~~L~l~~n  240 (289)
                      ++.|....  ..-.+...++|.+|++.++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            99887531  1112778899999998765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=1.8e-09  Score=97.64  Aligned_cols=126  Identities=21%  Similarity=0.276  Sum_probs=93.3

Q ss_pred             ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366          112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN  191 (289)
Q Consensus       112 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  191 (289)
                      +|...+.++|.+. .+...+.-++.++.|+|++|++...  ..+..+++|++||++.|.+. .+|..-..-..|+.|.+.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            5777788888887 6777777788888889999888733  27778888999999888887 444322222238888888


Q ss_pred             CccCcccCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEEEccCCccc
Q 045366          192 GNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYH  243 (289)
Q Consensus       192 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~  243 (289)
                      +|.++. + ..+.++.+|+.||+++|-+.+....  +..+..|+.|.+.||.+.
T Consensus       241 nN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888763 2 3567888888899998888755432  556678888888888875

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=3.7e-09  Score=76.69  Aligned_cols=106  Identities=23%  Similarity=0.287  Sum_probs=74.3

Q ss_pred             eeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCCcccCCcccc-cccccccccccccccCCCCCccccCCCCCcEE
Q 045366           64 RVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSLRAEIPHEVG-NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF  140 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  140 (289)
                      ....+||+.+.+...  .+..+....+|+..+|++|.+. .+|..|. .++.++.|++++|.++ .+|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344556666654321  1223444566777788888886 4666655 3568888888888887 788888888888888


Q ss_pred             EccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366          141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       141 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      +++.|.+. ..|+.+..+.++-+|+..+|.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            88888887 66777777888888888777766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=3.9e-08  Score=71.46  Aligned_cols=103  Identities=22%  Similarity=0.328  Sum_probs=45.5

Q ss_pred             cccccccccccCCCCCcc---ccCCCCCcEEEccCCcCCCCcchhcc-CCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366          113 LQNLTLTNNYFSGKIPTN---LSRCSNLVKFEASNNKLEGEIPAEIS-NLLKFQILNIAKNHLKGQLPASIGNLSTLQEI  188 (289)
Q Consensus       113 L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  188 (289)
                      +..++|+.+.+. .+++.   +.+...|...++++|.+. .+|+.|. ..+..+.|++.+|.++ .+|.++..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555443 22222   222334444455555554 3333332 2334455555555554 344445555555555


Q ss_pred             EccCccCcccCCccccCCCCCcEEeccCCcC
Q 045366          189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQF  219 (289)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  219 (289)
                      +++.|.+. ..|..+..+.++..|+..+|.+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            55555444 3344444444444444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.20  E-value=2.9e-06  Score=65.83  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=72.2

Q ss_pred             cccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366          113 LQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN  191 (289)
Q Consensus       113 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  191 (289)
                      -+.+++.+.++.. +-. ++ -+.+...+|+++|.+.  .-..|..++.|.+|.++.|+++...|.--.-+++|+.|.+.
T Consensus        21 e~e~~LR~lkip~-ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPV-IEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccc-hhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            4566666665541 111 21 1335666777777664  22345566777777777777775555444455667777777


Q ss_pred             CccCcccC-CccccCCCCCcEEeccCCcCcccCCC----CCCCCCCCEEEccCCc
Q 045366          192 GNRLSGRI-PSTRSHVRNLISFNVGLNQFSGMFPP----INNISSLEYIFIHKNR  241 (289)
Q Consensus       192 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n~  241 (289)
                      +|++.... -.-++.+|+|++|.+-+|.++.....    +..+++|+.||+.+=.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77664211 12355666777777777766543332    5566677777765543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=6.1e-07  Score=72.71  Aligned_cols=207  Identities=19%  Similarity=0.204  Sum_probs=138.0

Q ss_pred             ccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccC---CCC-------CccccCCCCCcEEEccCCcCC
Q 045366           83 VGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFS---GKI-------PTNLSRCSNLVKFEASNNKLE  148 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~~~  148 (289)
                      +..+..++.++|++|.|...    +...+.+-.+|+..+++.--..   ..+       -+++-++|+|+..+++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34467889999999999643    3344556678888888763221   112       234678999999999999997


Q ss_pred             CCcchh----ccCCCCCceeeeeccccccc----CC---------hhccCCCCCCEEEccCccCcccCC----ccccCCC
Q 045366          149 GEIPAE----ISNLLKFQILNIAKNHLKGQ----LP---------ASIGNLSTLQEINVNGNRLSGRIP----STRSHVR  207 (289)
Q Consensus       149 ~~~~~~----~~~l~~L~~L~l~~n~~~~~----~~---------~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~  207 (289)
                      ...|+.    +++-+.|.+|.+++|++...    +.         +...+-|.|+.+.+..|++..-..    ..+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            666543    56778899999999987622    11         123456789999999998752211    1233336


Q ss_pred             CCcEEeccCCcCccc--CC----CCCCCCCCCEEEccCCcccccCchh---hhcCCCCCcEEEccccccccccCccc---
Q 045366          208 NLISFNVGLNQFSGM--FP----PINNISSLEYIFIHKNRYHGSLPLD---IGVNLPNLRFFIISGNNLTGSLQDSL---  275 (289)
Q Consensus       208 ~L~~L~l~~n~l~~~--~~----~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~---  275 (289)
                      .|+.+.+..|.|..-  ..    .+..+.+|+.|++..|-++-.-...   ..+.++.|+.|.+.+|.++......+   
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            899999999988621  11    1456789999999999876221111   22356778999999998875433222   


Q ss_pred             ---cCCCCCCeEeCcCC
Q 045366          276 ---SNTTNLHKLDINRN  289 (289)
Q Consensus       276 ---~~~~~L~~L~l~~N  289 (289)
                         ...|+|..|...+|
T Consensus       266 f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         266 FNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhhhcCCCccccccchh
Confidence               23556666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=4.2e-06  Score=64.99  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccC-ChhccCCCCCCEEEc
Q 045366          112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL-PASIGNLSTLQEINV  190 (289)
Q Consensus       112 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l  190 (289)
                      ....+||++|.+. .+ +.|..+++|.+|.+.+|+|+...|.--..+++|+.|.+.+|.+.... -.-+..+++|+.|.+
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            3445555555543 22 22445555555555555555444433344455555555555554211 112345556666666


Q ss_pred             cCccCcccC---CccccCCCCCcEEeccCC
Q 045366          191 NGNRLSGRI---PSTRSHVRNLISFNVGLN  217 (289)
Q Consensus       191 ~~n~~~~~~---~~~~~~~~~L~~L~l~~n  217 (289)
                      -+|..+...   ...+..+|+|+.||.++-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            655554211   123445566666665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=8.9e-06  Score=47.66  Aligned_cols=36  Identities=36%  Similarity=0.686  Sum_probs=15.9

Q ss_pred             CCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366          136 NLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       136 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      +|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33334444444444444444444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=1.5e-06  Score=81.44  Aligned_cols=146  Identities=12%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             cccccccccccccC-CCCCcccc-CCCCCcEEEccCCcCC-CCcchhccCCCCCceeeeecccccccCChhccCCCCCCE
Q 045366          111 FKLQNLTLTNNYFS-GKIPTNLS-RCSNLVKFEASNNKLE-GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE  187 (289)
Q Consensus       111 ~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  187 (289)
                      .+|++||+++...- ..-|..++ .+|+|+.|.+.+-.+. ........++|+|..||+++++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666654321 11111222 3566666666655443 12233345566666666666666532  44556666666


Q ss_pred             EEccCccCcc-cCCccccCCCCCcEEeccCCcCcccC-------CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCc
Q 045366          188 INVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMF-------PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLR  258 (289)
Q Consensus       188 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  258 (289)
                      |.+.+-.+.. ..-..+..+++|+.||+|........       .--..+|.|+.||.+++.+...+-+.+...-++|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            6655544331 11123445566666666554332111       00123455555555555554433333332333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=9.5e-06  Score=47.55  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=25.3

Q ss_pred             CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       230 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++|++|++++|+++ .+|+.+. ++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence            35777777777777 5665555 7777777777777777

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=3.9e-06  Score=78.66  Aligned_cols=146  Identities=21%  Similarity=0.355  Sum_probs=102.2

Q ss_pred             CCCcEEEccCCcCCC-Ccchh-ccCCCCCceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCcE
Q 045366          135 SNLVKFEASNNKLEG-EIPAE-ISNLLKFQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLIS  211 (289)
Q Consensus       135 ~~L~~L~l~~n~~~~-~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  211 (289)
                      .+|++|++++..... .-+.. -..+|+|+.|.+.+-.+... ......++++|..||+++.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            579999998865431 11222 34689999999998776532 345567899999999999998843  67889999999


Q ss_pred             EeccCCcCcccCC--CCCCCCCCCEEEccCCccccc--Cchh---hhcCCCCCcEEEccccccccccCcc-ccCCCCCC
Q 045366          212 FNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGS--LPLD---IGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLH  282 (289)
Q Consensus       212 L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~  282 (289)
                      |.+.+=.+.....  .+-++++|+.||+|..+....  +...   ....+|.|+.||.|++.+.+.+-+. +..-++|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            9988777764322  266789999999998876422  1221   1235799999999999887654332 23344443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=6.3e-05  Score=65.66  Aligned_cols=137  Identities=15%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC-cCCCCcchhccCCCCC
Q 045366           83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGEIPAEISNLLKF  161 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L  161 (289)
                      +..+++++.|++++|.+. .+|. +  ..+|+.|.++++.--..+|..+.  .+|++|++++| .+. .+|.      .|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence            344578999999999887 4562 2  24699999987543236676553  58999999988 443 3443      57


Q ss_pred             ceeeeecccccccCChhccCC-CCCCEEEccCcc-Cc-ccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEcc
Q 045366          162 QILNIAKNHLKGQLPASIGNL-STLQEINVNGNR-LS-GRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIH  238 (289)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  238 (289)
                      +.|++..+....     +..+ ++|+.|.+.+++ .. ...|..+  .++|++|++++|.....+..+.  .+|+.|.++
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITLH  185 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence            778777655431     2222 256677775433 11 1122222  2589999999888664333233  589999988


Q ss_pred             CCc
Q 045366          239 KNR  241 (289)
Q Consensus       239 ~n~  241 (289)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=9.5e-05  Score=54.38  Aligned_cols=122  Identities=20%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             hccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366          154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL  232 (289)
Q Consensus       154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L  232 (289)
                      .|..+.+|+.+.+.. .+.......|..+++++.+.+.++ +......+|..+++++.+.+.+ .+...... +..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455555666666553 343334445666666666666553 4433445566666677777654 33333333 5666777


Q ss_pred             CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366          233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH  282 (289)
Q Consensus       233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  282 (289)
                      +.+.+..+ +. .++...+.+. .++.+.+.. .+.......|.++++|+
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777554 33 4555555455 777777665 33434455677776664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00022  Score=62.39  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=88.5

Q ss_pred             cccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCC
Q 045366          107 VGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ  186 (289)
Q Consensus       107 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  186 (289)
                      +..+.+++.|++++|.+. .+|. +  ..+|++|.++++.--..+|..+  .++|++|++.+|.-...+|.      .|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            345688999999999887 6672 2  2469999998754333566544  25899999998833223443      577


Q ss_pred             EEEccCccCcc--cCCccccCCCCCcEEeccCCc-CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc
Q 045366          187 EINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQ-FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS  263 (289)
Q Consensus       187 ~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls  263 (289)
                      .|++.++....  .+|      ++|+.|.+.++. .......-.-.++|++|++++|... .+|..+.   .+|+.|+++
T Consensus       116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP---~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP---ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc---ccCcEEEec
Confidence            78887665431  233      366777774432 2111001112268999999998865 4554443   689999998


Q ss_pred             ccc
Q 045366          264 GNN  266 (289)
Q Consensus       264 ~n~  266 (289)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.63  E-value=0.00019  Score=52.72  Aligned_cols=106  Identities=23%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             cccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCC
Q 045366           82 FVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF  161 (289)
Q Consensus        82 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  161 (289)
                      .|..+++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..+.+++.+.+.. .+.......|..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344455555555543 343334444555555555555443 3322333444554555555543 2221223344445555


Q ss_pred             ceeeeecccccccCChhccCCCCCCEEEccC
Q 045366          162 QILNIAKNHLKGQLPASIGNLSTLQEINVNG  192 (289)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  192 (289)
                      +.+++..+ +.......|.+. .++.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55555433 222223334444 555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.51  E-value=6.6e-05  Score=60.71  Aligned_cols=85  Identities=21%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             CCCCcEEEccCCCCcccCCccccccccccccccccc--ccCCCCCccccCCCCCcEEEccCCcCCC-CcchhccCCCCCc
Q 045366           86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQ  162 (289)
Q Consensus        86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~  162 (289)
                      +..|+.+++.+..++.  -..|-.+++|++|+++.|  ++.+.++.-...+|+|+++++++|++.. ..-.....+.+|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3444444444444431  112334555555566555  3333333333344555566665555541 0011223444455


Q ss_pred             eeeeeccccc
Q 045366          163 ILNIAKNHLK  172 (289)
Q Consensus       163 ~L~l~~n~~~  172 (289)
                      .|++..|...
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.50  E-value=4.4e-05  Score=61.72  Aligned_cols=109  Identities=16%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC--cCCCCcchhccCCCCCceeeeecccccccC-Chhc
Q 045366          103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN--KLEGEIPAEISNLLKFQILNIAKNHLKGQL-PASI  179 (289)
Q Consensus       103 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~  179 (289)
                      +......+..|+.|.+.+..++ .+. .+..+++|++|.++.|  .+.+.++.....+|+|+++++++|++.... -..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            4444455666777776666555 222 3556778888888888  555555555556688888888888776310 1123


Q ss_pred             cCCCCCCEEEccCccCcccC---CccccCCCCCcEEe
Q 045366          180 GNLSTLQEINVNGNRLSGRI---PSTRSHVRNLISFN  213 (289)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~  213 (289)
                      ..+.+|..|++..|..++.-   -..|.-+++|+++|
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            45556667777666554311   12233455666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=2.1e-05  Score=64.20  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC--ccccCCCCCcEEEccCCcCC
Q 045366           85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP--TNLSRCSNLVKFEASNNKLE  148 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~  148 (289)
                      +|+.|+.|.|+-|+|+...  .|..+++|++|+|..|.|. .+.  .-+.++++|+.|.|..|.-.
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcc
Confidence            3444455555555444211  2344455555555555444 111  12334455555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=1.9e-05  Score=64.49  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEE
Q 045366          158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYI  235 (289)
Q Consensus       158 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L  235 (289)
                      +.+.+.|++.++++.+.  .....++.|+.|.|+-|.++..  ..+..+++|++|.|..|.|..+...  +.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455666666666532  2334566666666666666522  2345566666666666666544332  5566666666


Q ss_pred             EccCCcccccCchhh----hcCCCCCcEEE
Q 045366          236 FIHKNRYHGSLPLDI----GVNLPNLRFFI  261 (289)
Q Consensus       236 ~l~~n~l~~~~~~~~----~~~~~~L~~L~  261 (289)
                      .|..|.-.+.-+...    ..-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666665544433321    22345555553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.0024  Score=37.09  Aligned_cols=19  Identities=53%  Similarity=1.310  Sum_probs=13.4

Q ss_pred             cCCCCCC--CCCCCcccceeC
Q 045366           41 MNSWNNS--INLCQWTGVTCG   59 (289)
Q Consensus        41 ~~~w~~~--~~~c~~~~~~c~   59 (289)
                      +.+|+..  .++|.|.||+|+
T Consensus        23 l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   23 LSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             CTT--TT--S-CCCSTTEEE-
T ss_pred             cccCCCcCCCCCeeeccEEeC
Confidence            6789987  699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.42  E-value=0.0016  Score=31.79  Aligned_cols=21  Identities=57%  Similarity=0.836  Sum_probs=13.0

Q ss_pred             CCcEEEccccccccccCccccC
Q 045366          256 NLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       256 ~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      +|++||+++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777766 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.89  E-value=2.1e-05  Score=70.70  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=105.9

Q ss_pred             CcEEEccCCCCcccC----CcccccccccccccccccccCCCC----CccccCC-CCCcEEEccCCcCCC----Ccchhc
Q 045366           89 LRSINLVNNSLRAEI----PHEVGNLFKLQNLTLTNNYFSGKI----PTNLSRC-SNLVKFEASNNKLEG----EIPAEI  155 (289)
Q Consensus        89 L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~----~~~~~~  155 (289)
                      +..+.|.+|.+....    ..++...+.|+.|++++|.+...-    ...+... ..+++|++..+.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777776432    233455677888888888776221    1223332 456667777776653    233445


Q ss_pred             cCCCCCceeeeecccccc----cCChhcc----CCCCCCEEEccCccCcccC----CccccCCCC-CcEEeccCCcCccc
Q 045366          156 SNLLKFQILNIAKNHLKG----QLPASIG----NLSTLQEINVNGNRLSGRI----PSTRSHVRN-LISFNVGLNQFSGM  222 (289)
Q Consensus       156 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~n~l~~~  222 (289)
                      .....++.+++..|.+..    .++..+.    ...++++|++.+|.++...    ...+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            556777788887777641    1223333    4667778888887765321    123344444 66677777777532


Q ss_pred             -----CCCCCCC-CCCCEEEccCCcccccCchhh---hcCCCCCcEEEcccccccc
Q 045366          223 -----FPPINNI-SSLEYIFIHKNRYHGSLPLDI---GVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       223 -----~~~~~~~-~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~Ls~n~l~~  269 (289)
                           .+.+..+ ..++.++++.|.+++.-....   ...++.++.+.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                 1113333 566788888887764433222   1255677888888887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.66  E-value=0.00091  Score=60.61  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CCCCcEEEccCCCCccc--CCccccccccccccccccc-ccCCCCC----ccccCCCCCcEEEccCCc-CCCCcchhcc-
Q 045366           86 LSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNN-YFSGKIP----TNLSRCSNLVKFEASNNK-LEGEIPAEIS-  156 (289)
Q Consensus        86 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~-  156 (289)
                      ++.|+.+.+..+.-...  .-.....++.|+.|+++++ ......+    .....+.+|+.++++++. ++...-..++ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666655532211  1122334566666666652 1110111    122334566666666655 3322222222 


Q ss_pred             CCCCCceeeeeccc-cccc-CChhccCCCCCCEEEccCcc
Q 045366          157 NLLKFQILNIAKNH-LKGQ-LPASIGNLSTLQEINVNGNR  194 (289)
Q Consensus       157 ~l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~  194 (289)
                      .+++|++|.+.++. +++. +......++.|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25666666655544 2322 11222345566666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.07  E-value=0.01  Score=28.89  Aligned_cols=9  Identities=33%  Similarity=0.468  Sum_probs=3.3

Q ss_pred             EEEccCCcC
Q 045366          139 KFEASNNKL  147 (289)
Q Consensus       139 ~L~l~~n~~  147 (289)
                      +|++++|.+
T Consensus         4 ~Ldls~n~l   12 (22)
T PF00560_consen    4 YLDLSGNNL   12 (22)
T ss_dssp             EEEETSSEE
T ss_pred             EEECCCCcC
Confidence            333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.84  E-value=9.6e-05  Score=66.54  Aligned_cols=179  Identities=17%  Similarity=0.237  Sum_probs=96.6

Q ss_pred             eEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCccc----CCcccccc-cccccccccccccCCC----CCccc
Q 045366           65 VIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRAE----IPHEVGNL-FKLQNLTLTNNYFSGK----IPTNL  131 (289)
Q Consensus        65 v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~  131 (289)
                      +..++|.+|.+...    +-..+.....|+.|++++|.+.+.    +...+... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55667777776644    223445567777788888877632    11223333 5667777777766632    23344


Q ss_pred             cCCCCCcEEEccCCcCCC----Ccchhcc----CCCCCceeeeeccccccc----CChhccCCCC-CCEEEccCccCccc
Q 045366          132 SRCSNLVKFEASNNKLEG----EIPAEIS----NLLKFQILNIAKNHLKGQ----LPASIGNLST-LQEINVNGNRLSGR  198 (289)
Q Consensus       132 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~~  198 (289)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.++.++..    ....+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456667777777776631    1222222    355677777777766522    1122333344 55566666665432


Q ss_pred             ----CCccccCC-CCCcEEeccCCcCcccCC-----CCCCCCCCCEEEccCCccc
Q 045366          199 ----IPSTRSHV-RNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       199 ----~~~~~~~~-~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~  243 (289)
                          ....+... ..++.++++.|.+...-.     .+..++.++++.+.+|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                12233333 455666666666652211     1444556666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.59  E-value=0.025  Score=25.56  Aligned_cols=13  Identities=54%  Similarity=0.629  Sum_probs=5.9

Q ss_pred             CCcEEEccccccc
Q 045366          256 NLRFFIISGNNLT  268 (289)
Q Consensus       256 ~L~~L~Ls~n~l~  268 (289)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.31  E-value=0.00076  Score=58.23  Aligned_cols=226  Identities=14%  Similarity=0.052  Sum_probs=111.4

Q ss_pred             CeeEEEeccCCCCCCc--CCccccCCCCCcEEEccCCCC-cccCCccc-cccccccccccccc-ccCCCCCc-cccCCCC
Q 045366           63 QRVIGLDLRHQSIRGF--LSPFVGYLSFLRSINLVNNSL-RAEIPHEV-GNLFKLQNLTLTNN-YFSGKIPT-NLSRCSN  136 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~  136 (289)
                      ..++.+++.++.-.+.  +-.....+++++.|.+.++.. ++..-..+ ..++++++|++..+ .++...-. ...++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4556666665543221  222334566677776666642 22211122 23566777777663 23311111 2234667


Q ss_pred             CcEEEccCCcC-CC-CcchhccCCCCCceeeeeccccccc--CChhccCCCCCCEEEccCcc-CcccCCc-cccCCCCCc
Q 045366          137 LVKFEASNNKL-EG-EIPAEISNLLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGNR-LSGRIPS-TRSHVRNLI  210 (289)
Q Consensus       137 L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~~~~~~~L~  210 (289)
                      |++++++++.- ++ .+...+..+..++.+.+.++.-.+.  +...-+...-+.++++..+. +++..-. .-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            77777766532 22 1111223334444444443221100  00011122334444444432 2321110 112345777


Q ss_pred             EEeccCCcCcccCC--C-CCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc-c-ccCccccCCCCCCeE
Q 045366          211 SFNVGLNQFSGMFP--P-INNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT-G-SLQDSLSNTTNLHKL  284 (289)
Q Consensus       211 ~L~l~~n~l~~~~~--~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~-~~~~~~~~~~~L~~L  284 (289)
                      .++.+++.-.+...  . ..+.++|+.|-+++++ +++.-...+..+.+.|+.+++..+... + .+-..-.+|+.|+.|
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            77776654422111  1 4567889999998886 443333445567889999999888553 2 233334678888888


Q ss_pred             eCcC
Q 045366          285 DINR  288 (289)
Q Consensus       285 ~l~~  288 (289)
                      .+++
T Consensus       378 slsh  381 (483)
T KOG4341|consen  378 SLSH  381 (483)
T ss_pred             Chhh
Confidence            8774

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.10  E-value=0.01  Score=53.71  Aligned_cols=128  Identities=20%  Similarity=0.154  Sum_probs=62.9

Q ss_pred             CCCCceeeeeccccccc--CChhccCCCCCCEEEccCc-cCcccC----CccccCCCCCcEEeccCCc-CcccCCC--CC
Q 045366          158 LLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGN-RLSGRI----PSTRSHVRNLISFNVGLNQ-FSGMFPP--IN  227 (289)
Q Consensus       158 l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n-~~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~  227 (289)
                      ++.|+.+.+.++.-...  ........+.|+.|+++++ ......    ......+++|+.++++++. ++...-.  ..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666655533222  2233455666777776652 111011    1223344666777776665 3321111  22


Q ss_pred             CCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc-cc-cCccccCCCCCCeEe
Q 045366          228 NISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT-GS-LQDSLSNTTNLHKLD  285 (289)
Q Consensus       228 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~-~~~~~~~~~~L~~L~  285 (289)
                      .+++|++|.+.++. +++.--..+...++.|++|+++++... +. +.....++++++.|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            35677777766565 443333344556677777777766432 11 222234455555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.0074  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=14.9

Q ss_pred             CCCcEEEcccc-ccccccCccccCCCCCCeEeC
Q 045366          255 PNLRFFIISGN-NLTGSLQDSLSNTTNLHKLDI  286 (289)
Q Consensus       255 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l  286 (289)
                      ++|+.|++++| +|++..-..+..+++|+.|.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            44555555544 444444444444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.66  E-value=0.0019  Score=51.73  Aligned_cols=83  Identities=20%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.||++.|.+.. +...++-++.+..|+++.|++. -.|..+.....+..+++..|..+ ..|..+...+.++++++
T Consensus        42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            678888888777543 3344555677777888887776 46777777777888888887777 78888888888888888


Q ss_pred             cCCcCC
Q 045366          143 SNNKLE  148 (289)
Q Consensus       143 ~~n~~~  148 (289)
                      ..|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            887765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.10  E-value=0.0025  Score=51.09  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             ccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCC
Q 045366           81 PFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLK  160 (289)
Q Consensus        81 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  160 (289)
                      ..+..+...+.||++.|.+. .....|+-++.+..|+++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34556678889999999886 45566888899999999999998 88988888888888999999887 78999999999


Q ss_pred             Cceeeeeccccc
Q 045366          161 FQILNIAKNHLK  172 (289)
Q Consensus       161 L~~L~l~~n~~~  172 (289)
                      +++++.-++.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999988764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.53  E-value=0.13  Score=25.87  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=10.9

Q ss_pred             CCCCEEEccCCcccccCchhhh
Q 045366          230 SSLEYIFIHKNRYHGSLPLDIG  251 (289)
Q Consensus       230 ~~L~~L~l~~n~l~~~~~~~~~  251 (289)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 4454443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.53  E-value=0.13  Score=25.87  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=10.9

Q ss_pred             CCCCEEEccCCcccccCchhhh
Q 045366          230 SSLEYIFIHKNRYHGSLPLDIG  251 (289)
Q Consensus       230 ~~L~~L~l~~n~l~~~~~~~~~  251 (289)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            34555555555554 4454443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.28  E-value=0.039  Score=27.30  Aligned_cols=16  Identities=38%  Similarity=0.569  Sum_probs=7.1

Q ss_pred             CCCcEEEccccccccc
Q 045366          255 PNLRFFIISGNNLTGS  270 (289)
Q Consensus       255 ~~L~~L~Ls~n~l~~~  270 (289)
                      ++|++|+|++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.66  E-value=0.21  Score=25.13  Aligned_cols=15  Identities=40%  Similarity=0.598  Sum_probs=9.2

Q ss_pred             CCCcEEEccCCCCcc
Q 045366           87 SFLRSINLVNNSLRA  101 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~  101 (289)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.66  E-value=0.21  Score=25.13  Aligned_cols=15  Identities=40%  Similarity=0.598  Sum_probs=9.2

Q ss_pred             CCCcEEEccCCCCcc
Q 045366           87 SFLRSINLVNNSLRA  101 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~  101 (289)
                      ++|+.|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.83  E-value=0.21  Score=43.74  Aligned_cols=225  Identities=18%  Similarity=0.137  Sum_probs=122.5

Q ss_pred             CeeEEEeccCCC-CCCc-CCccccCCCCCcEEEccCC-CCcccCCc-ccccccccccccccccc-cCCCCC-ccccCCCC
Q 045366           63 QRVIGLDLRHQS-IRGF-LSPFVGYLSFLRSINLVNN-SLRAEIPH-EVGNLFKLQNLTLTNNY-FSGKIP-TNLSRCSN  136 (289)
Q Consensus        63 ~~v~~l~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~  136 (289)
                      ++++.+.+.++. ++.. .-..-..+++++.+++..| .++...-. --.++++|++++++.+. +++.-. .-.+++..
T Consensus       164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~  243 (483)
T KOG4341|consen  164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE  243 (483)
T ss_pred             CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence            678888777665 2222 1122245788888988884 44443322 23468899999998865 443111 11223333


Q ss_pred             CcEEEccCCc---------------------------CCCCcc-hhccCCCCCceeeeeccccccc-CChhc-cCCCCCC
Q 045366          137 LVKFEASNNK---------------------------LEGEIP-AEISNLLKFQILNIAKNHLKGQ-LPASI-GNLSTLQ  186 (289)
Q Consensus       137 L~~L~l~~n~---------------------------~~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~~-~~~~~L~  186 (289)
                      ++.+.+.++.                           ++...- ..-..+..|+.++.+++...+. .-.++ .+.++|+
T Consensus       244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~  323 (483)
T KOG4341|consen  244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ  323 (483)
T ss_pred             hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence            4444333321                           111000 0112344566666655433211 11122 3557888


Q ss_pred             EEEccCcc-CcccCCccc-cCCCCCcEEeccCCcCc--c-cCCCCCCCCCCCEEEccCCccc-cc--C-chhhhcCCCCC
Q 045366          187 EINVNGNR-LSGRIPSTR-SHVRNLISFNVGLNQFS--G-MFPPINNISSLEYIFIHKNRYH-GS--L-PLDIGVNLPNL  257 (289)
Q Consensus       187 ~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~n~l~--~-~~~~~~~~~~L~~L~l~~n~l~-~~--~-~~~~~~~~~~L  257 (289)
                      .+-++++. +++.--..+ .+++.|+.+++..+...  + +...-.+++.|+.+.++++... +.  . ......+...+
T Consensus       324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l  403 (483)
T KOG4341|consen  324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL  403 (483)
T ss_pred             EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence            88888776 332111122 25678888888777653  2 1222567788999988877543 11  0 01112356778


Q ss_pred             cEEEcccccc-ccccCccccCCCCCCeEeCc
Q 045366          258 RFFIISGNNL-TGSLQDSLSNTTNLHKLDIN  287 (289)
Q Consensus       258 ~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~  287 (289)
                      +.+.|+++.. ++...+.+..+++|+.+++-
T Consensus       404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  404 EVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             ceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            8888888854 44555677888888887763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.34  E-value=0.075  Score=41.81  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=16.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCC
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNN   97 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n   97 (289)
                      ..|+.+|-++..|...=-+.+..++.++.|.+.++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            34555555555544333334444444555555444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.61  E-value=1.1  Score=22.68  Aligned_cols=18  Identities=44%  Similarity=0.665  Sum_probs=12.7

Q ss_pred             CCCcEEEccccccccccCc
Q 045366          255 PNLRFFIISGNNLTGSLQD  273 (289)
Q Consensus       255 ~~L~~L~Ls~n~l~~~~~~  273 (289)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            46777888888877 5554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-18
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 63  QRVIGLDLRHQSIRGFLSPFVGY-------------------------LSFLRSINLVNN 97
             + GLDL      G + PF G                          +  L+ ++L  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 98  SLRAEIPHEVGNL-FKLQNLTLTNNYFSGKIPTNLSRCSN----LVKFEASNNKLEGEIP 152
               E+P  + NL   L  L L++N FSG I  NL  C N    L +    NN   G+IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIP 411
Query: 153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISF 212
             +SN  +   L+++ N+L G +P+S+G+LS L+++ +  N L G IP    +V+ L + 
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
            +  N  +G  P  ++N ++L +I +  NR  G +P  IG  L NL    +S N+ +G++
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNI 530
Query: 272 QDSLSNTTNLHKLDINRN 289
              L +  +L  LD+N N
Sbjct: 531 PAELGDCRSLIWLDLNTN 548

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 63  QRVIGLDLRHQSIRGFLSPFVGY-------------------------LSFLRSINLVNN 97
             + GLDL      G + PF G                          +  L+ ++L  N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 98  SLRAEIPHEVGNL-FKLQNLTLTNNYFSGKIPTNLSRCSN----LVKFEASNNKLEGEIP 152
               E+P  + NL   L  L L++N FSG I  NL  C N    L +    NN   G+IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIP 408
Query: 153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISF 212
             +SN  +   L+++ N+L G +P+S+G+LS L+++ +  N L G IP    +V+ L + 
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
            +  N  +G  P  ++N ++L +I +  NR  G +P  IG  L NL    +S N+ +G++
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNI 527
Query: 272 QDSLSNTTNLHKLDINRN 289
              L +  +L  LD+N N
Sbjct: 528 PAELGDCRSLIWLDLNTN 545

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 117/282 (41%), Gaps = 58/282 (20%)
Query: 40  AMNSWNNSINLC--QWTGVTCGHRHQ--RVIGLDLRHQSI-RGFLSPF----VGYLSFLR 90
            ++SW  + + C   W GV C    Q  RV  LDL   ++ + +  P     + YL+FL 
Sbjct: 23  TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 91  SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGE 150
            I  +NN L   IP  +  L +L  L +T+   SG IP  LS+   LV            
Sbjct: 83  -IGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT----------- 129
Query: 151 IPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI 210
                        L+ + N L G LP SI +L  L  I  +GNR+SG IP +      L 
Sbjct: 130 -------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 211 -SFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG--------------------SLPLD 249
            S  +  N+ +G  PP     +L ++ + +N   G                    SL  D
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 250 IG-VNL-PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +G V L  NL    +  N + G+L   L+    LH L+++ N
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 73  QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLT---LTNNYFSGKIPT 129
           +S++G     + YL  +R + L  N L     H++  L +L NLT   LT N        
Sbjct: 54  KSVQG-----IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNG 103
Query: 130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
              + +NL +     N+L+         L     LN+A N L+         L+ L E++
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRYHGS 245
           ++ N+L          +  L    +  NQ      G+F   + ++SL+YI++H N +  +
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCT 220
Query: 246 LP 247
            P
Sbjct: 221 CP 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (484), Expect = 4e-59
 Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 22/278 (7%)

Query: 31  NEADRLSLLA----------MNSWNNSINLCQ--WTGVTCGHRHQ--RVIGLDLRHQSIR 76
           N  D+ +LL           ++SW  + + C   W GV C    Q  RV  LDL   ++ 
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 77  G--FLSPFVGYLSFLRSINLVN-NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSR 133
               +   +  L +L  + +   N+L   IP  +  L +L  L +T+   SG IP  LS+
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 134 CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL-QEINVNG 192
              LV  + S N L G +P  IS+L     +    N + G +P S G+ S L   + ++ 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIG 251
           NRL+G+IP T +++ NL   ++  N   G       +  + + I + KN     L   +G
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 252 VNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
               NL    +  N + G+L   L+    LH L+++ N
Sbjct: 242 -LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 1e-34
 Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 3/182 (1%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKL-QNLTLTNNYFSGK 126
           LD  + ++ G L P +  L  L  I    N +   IP   G+  KL  ++T++ N  +GK
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
           IP   +   NL   + S N LEG+      +    Q +++AKN L   L   +G    L 
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246
            +++  NR+ G +P   + ++ L S NV  N   G  P   N+   +      N+     
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

Query: 247 PL 248
           PL
Sbjct: 308 PL 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (419), Expect = 2e-46
 Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 27/281 (9%)

Query: 28  AQANEADRLSLLA----------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRG 77
           +Q+   +   L++          +  W+++ N C + GVTC  R  +V  +DL  + +  
Sbjct: 7   SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNV 64

Query: 78  F---LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT--NLS 132
               +S  +  L+ L S+ L N+ +   +         L +L L+ N  SG + T  +L 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 133 RCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI---GNLSTLQEI 188
            CS L     S+N L+          L   ++L+++ N + G              L+ +
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPL 248
            ++GN++SG +    S   NL   +V  N FS   P + + S+L+++ I  N+  G    
Sbjct: 184 AISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241

Query: 249 DIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            I      L+   IS N   G +        +L  L +  N
Sbjct: 242 AIS-TCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (383), Expect = 2e-41
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L    + G +   +G LS LR + L  N L  EIP E+  +  L+ L L  N  +G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P+ LS C+NL     SNN+L GEIP  I  L    IL ++ N   G +PA +G+  +L  
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYH--G 244
           +++N N  +G IP+        I+     N  +G     I N    +      N     G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
                +   L       I+     G    +  N  ++  LD++ N
Sbjct: 599 IRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (377), Expect = 1e-40
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGK 126
           L++      G + P    L  L+ ++L  N    EIP  + G    L  L L+ N+F G 
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAE-ISNLLKFQILNIAKNHLKGQLPASIGNLST- 184
           +P     CS L     S+N   GE+P + +  +   ++L+++ N   G+LP S+ NLS  
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 185 LQEINVNGNRLSGRIPST--RSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNR 241
           L  ++++ N  SG I     ++    L    +  N F+G  PP ++N S L  + +  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 242 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             G++P  +G +L  LR   +  N L G +   L     L  L ++ N
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 3e-40
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 68  LDLRHQSIRGFLSPFVG--YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG 125
           LDL   +  G + P +     + L+ + L NN    +IP  + N  +L +L L+ NY SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
            IP++L   S L   +   N LEGEIP E+  +   + L +  N L G++P+ + N + L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHG 244
             I+++ NRL+G IP     + NL    +  N FSG  P  + +  SL ++ ++ N ++G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++P  +           I+ N + G     + N     +     N
Sbjct: 553 TIPAAMF-KQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (357), Expect = 6e-38
 Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 24/245 (9%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L    + G +   + Y+  L ++ L  N L  EIP  + N   L  ++L+NN  +G+I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  + R  NL   + SNN   G IPAE+ +      L++  N   G +PA++   S    
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 188 IN----------------------VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP 225
            N                       N     G      + +      N+    + G   P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
             +N  S+ ++ +  N   G +P +IG ++P L    +  N+++GS+ D + +   L+ L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 285 DINRN 289
           D++ N
Sbjct: 686 DLSSN 690

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (328), Expect = 4e-34
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           + L +  + G +  ++G L  L  + L NNS    IP E+G+   L  L L  N F+G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN--HLKGQLPASIGNLSTL 185
           P  + + S  +    + N + G+    I N    +  + A N    +G     +  LST 
Sbjct: 555 PAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHG 244
              N+      G    T  +  +++  ++  N  SG  P  I ++  L  + +  N   G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S+P ++G +L  L    +S N L G +  ++S  T L ++D++ N
Sbjct: 671 SIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 3e-28
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 2/167 (1%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNN--SLRAEIPHEVGNLFKLQNLTLTNNYFSG 125
             +    I G    ++      +  +   N    +     ++  L       +T+  + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
                     +++  + S N L G IP EI ++    ILN+  N + G +P  +G+L  L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 232
             ++++ N+L GRIP   S +  L   ++  N  SG  P +    + 
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 3e-24
 Identities = 35/139 (25%), Positives = 59/139 (42%)

Query: 64  RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYF 123
           +           +G  S  +  LS     N+ +            N   +  L ++ N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 124 SGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS 183
           SG IP  +     L      +N + G IP E+ +L    IL+++ N L G++P ++  L+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 184 TLQEINVNGNRLSGRIPST 202
            L EI+++ N LSG IP  
Sbjct: 705 MLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (311), Expect = 6e-32
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 24/264 (9%)

Query: 43  SWNNSINLCQWT---GVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSL 99
           +WN +  L  W    GV+    + RV GL L      G +   +G L+ L  + L ++  
Sbjct: 59  NWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 100 R----AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSR--CSNLVKFEASNNKLEGEIPA 153
           +       P  +      +       ++         R   S+L+K   +++  +  I  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN 213
                LK   +    N++   +  ++  L+ L++  +  +              N     
Sbjct: 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-- 234

Query: 214 VGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
               Q+       +N+  L  + ++       LP  +   LP ++   ++ N      Q 
Sbjct: 235 --AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQL 291

Query: 274 --------SLSNTTNLHKLDINRN 289
                          +  + I  N
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 3e-23
 Identities = 36/246 (14%), Positives = 75/246 (30%), Gaps = 44/246 (17%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
                + N            +  NL  L ++ + N     K+PT L     +     + N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 146 KL--------EGEIPAEISNLLKFQILNIAKNHLK-GQLPASIGNLSTLQEINVNGNRLS 196
           +         + +  A+     K QI+ I  N+LK   +  S+  +  L  +    N+L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 197 GRIPS-----------------------TRSHVRNLISFNVGLNQFSGMFPP---INNIS 230
           G++P+                              + + +   N+     P      ++S
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 231 SLEYIFIHKNR-------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHK 283
            +  I    N            L         N+    +S N ++   ++  S  + L  
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 284 LDINRN 289
           +++  N
Sbjct: 462 INLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.8 bits (244), Expect = 4e-23
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 28/246 (11%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+  +  + G L  F G    L S+NL  N +     +  G   +++NL+  +N     I
Sbjct: 335 LECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 128 PTNLS--RCSNLVKFEASNNKLEG-------EIPAEISNLLKFQILNIAKNHLKGQLPAS 178
           P        S +   + S N++          +       +    +N++ N +       
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 179 IGNLSTLQEINVNGNRLSG-------RIPSTRSHVRNLISFNVGLNQFSGMFPPI--NNI 229
               S L  IN+ GN L+               +   L S ++  N+ + +        +
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII------SGNNLTGSLQDSLSNTTNLHK 283
             L  I +  N +    P     N   L+ F I       GN       + ++   +L +
Sbjct: 513 PYLVGIDLSYNSF-SKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 284 LDINRN 289
           L I  N
Sbjct: 571 LQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 30/246 (12%)

Query: 68  LDLRHQSIRGFLSPF-VGYLSFLRSINLVNNSLR-------AEIPHEVGNLFKLQNLTLT 119
           L   H  ++   + F    +S + +I+   N +          +         + ++ L+
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEG-------EIPAEISNLLKFQILNIAKNHLK 172
           NN  S       S  S L       N L         +      N      +++  N L 
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 173 GQLPASI--GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVG------LNQFSGMFP 224
             L        L  L  I+++ N  S   P+   +   L  F +        N+    +P
Sbjct: 502 K-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 225 P-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHK 283
             I    SL  + I  N     +   I    PN+    I  N         +        
Sbjct: 560 EGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 284 LDINRN 289
             +  +
Sbjct: 616 YMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 21/190 (11%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR-------AEIPHEVGNLFKLQNLTLTN 120
           ++L +  I  F        S L SINL+ N L         +      N + L ++ L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 121 NYFSGKIPTNL--SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNI------AKNHLK 172
           N  +  +  +   +    LV  + S N      P +  N    +   I        N   
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 173 GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISS 231
            + P  I    +L ++ +  N +            N+   ++  N    +    +     
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSYVCPYIE 612

Query: 232 LEYIFIHKNR 241
                +  ++
Sbjct: 613 AGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 11/136 (8%)

Query: 68  LDLRHQSIRGFLSPF-VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQ------NLTLTN 120
           +DLR   +      F    L +L  I+L  NS   + P +  N   L+            
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG 180
           N    + P  ++ C +L + +  +N +   +  +I+  +   +L+I  N       + + 
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNI--SVLDIKDNPNISIDLSYVC 608

Query: 181 NLSTLQEINVNGNRLS 196
                    +  ++  
Sbjct: 609 PYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 3e-26
 Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 7/229 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L H  +R   +      S L S+++  N++    P     L  L+ L L +N  S   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
               + C+NL +    +N ++               L+++ N L      +   L  LQE
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 188 INVNGNRLSGRIPSTRSHVRN--LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHG 244
           + ++ N++            N  L    +  NQ     P   + I  L  +F++  +   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 245 SLPLDIGV--NLPNLRFFIISGNNLTGSLQDSLSN--TTNLHKLDINRN 289
           SL   + +     ++R   +S + L+ +   +      TNL  LD++ N
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 10/228 (4%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
            D  H  +           + +  +NL +N LR           +L +L +  N  S   
Sbjct: 9   ADCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P    +   L      +N+L        +       L++  N ++            L  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP---INNISSLEYIFIHKNRYHG 244
           ++++ N LS     T+  + NL    +  N+   +      I   SSL+ + +  N+   
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS---NTTNLHKLDINRN 289
             P      +  L    ++   L  SL + L      T++  L ++ +
Sbjct: 186 FSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 1e-21
 Identities = 41/261 (15%), Positives = 82/261 (31%), Gaps = 16/261 (6%)

Query: 45  NNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSF--LRSINLVNNSLRAE 102
           N  +       +     +  +  L L +  +    +     L +  L  ++L  N+L   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCS---------NLVKFEASNNKLEGEIPA 153
                  L +L+   L  N        +L             +  K   S   L      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS----HVRNL 209
               L   + LN+  N + G        L  L+ ++++ +  S R  +  +        L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 210 ISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
              N+  N+ S +     + +  LE + +  N     L       L N+    +S N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 269 GSLQDSLSNTTNLHKLDINRN 289
              ++S +   +L +L + R 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 13/216 (6%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASN 144
            S L  +NL  N +          L  L+ L L  N    ++         N+ +   S 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 145 NKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGRIPST 202
           NK         + +   Q L + +  LK     P+    L  L  ++++ N ++      
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 203 RSHVRNLISFNVGLNQFSGMFP---------PINNISSLEYIFIHKNRYHGSLPLDIGVN 253
              +  L   ++  N  + ++           +  +S L  + +  N +   +P+++  +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKD 558

Query: 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L  L+   +  NNL        +N  +L  L++ +N
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 44/238 (18%), Positives = 81/238 (34%), Gaps = 16/238 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNN---------SLRAEIPHEVGNLFKLQNLTL 118
             L + +I+   S  +  L  +R +NL  +         SL          L  L++L +
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 119 TNNYFSGKIPTNLSRCSNLVKFEASNNKLE-GEIPAEISNLLKF---QILNIAKNHLKGQ 174
            +N   G      +   NL     SN+      +  E    L      ILN+ KN +   
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 175 LPASIGNLSTLQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLNQFSGMFPP-INNISSL 232
              +   L  L+ +++  N +   +       + N+    +  N++  +       + SL
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 233 EYIFIHKNRYHG-SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           + + + +               L NL    +S NN+     D L     L  LD+  N
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 47/259 (18%), Positives = 95/259 (36%), Gaps = 15/259 (5%)

Query: 45  NNSINLCQWTGVTCGH-RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI 103
           N+  +L   T  T     H  +  L+L    I    S    +L  L  ++L  N +  E+
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 104 PHEV-GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG--EIPAEISNLLK 160
             +    L  +  + L+ N +      + +   +L +       L+     P+    L  
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 161 FQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS--------GRIPSTRSHVRNLISF 212
             IL+++ N++       +  L  L+ +++  N L+        G        + +L   
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 213 NVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 271
           N+  N F  +      ++  L+ I +  N  +  LP  +  N  +L+   +  N +T   
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 272 QDSLSNT-TNLHKLDINRN 289
           +        NL +LD+  N
Sbjct: 601 KKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 4e-19
 Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 18/240 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG---NLFKLQNLTLTNNYFS 124
           L+L    I+ F       +  L  + L N  L   +  ++        ++NL+L+N+  S
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 125 GKIPTNLS--RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNL 182
               T     + +NL   + S N L        + L + +   +  N+++     S+  L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 183 STLQEINVNGN---------RLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSL 232
             ++ +N+  +          L      +   ++ L   N+  N   G+   +   + +L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 233 EYIFIHKNR-YHGSLPLDIGVNLPN--LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +Y+ +  +     +L  +  V+L +  L    ++ N ++    D+ S   +L  LD+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 12/192 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR--AEIPHEVGNLFKLQNLTLTNNYFSG 125
           + L +             +  L+ + L   +L+     P     L  L  L L+NN  + 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 126 KIPTNLSRCSNLVKFEASNNKLE--------GEIPAEISNLLKFQILNIAKNHLKGQLPA 177
                L     L   +  +N L         G     +  L    ILN+  N        
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI--NNISSLEYI 235
              +L  L+ I++  N L+    S  ++  +L S N+  N  + +   +      +L  +
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 236 FIHKNRYHGSLP 247
            +  N +  +  
Sbjct: 615 DMRFNPFDCTCE 626

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (259), Expect = 5e-25
 Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 8/230 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL    +R   S        L+ ++L    ++        +L  L  L LT N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQ 186
               S  S+L K  A    L       I +L   + LN+A N ++  +LP    NL+ L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHKNRY 242
            ++++ N++     +    +  +   N+ L    N  + + P       L  + +  N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGS---LQDSLSNTTNLHKLDINRN 289
             ++       L  L    +            +   S    L  L I   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 6e-21
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 12/226 (5%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
             L   +I         Y    + + LVN         +   L       LT     G  
Sbjct: 287 FSLVSVTIERVKD--FSYNFGWQHLELVNCKF-----GQFPTLKLKSLKRLTFTSNKGGN 339

Query: 128 PTNLSRCSNLVKFEASNNKL--EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
             +     +L   + S N L  +G            + L+++ N +   + ++   L  L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 398

Query: 186 QEINVNGNRLSGRIP-STRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYH 243
           + ++   + L      S    +RNLI  ++        F    N +SSLE + +  N + 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +   DI   L NL F  +S   L      + ++ ++L  L+++ N
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 12/227 (5%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN--YFSG 125
           L+L +     F +     L       L   S +        +L  L+ L L+ N   F G
Sbjct: 309 LELVNCKFGQFPT-----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLST 184
               +    ++L   + S N +   + +    L + + L+   ++LK     S+  +L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRY 242
           L  ++++            + + +L    +  N F   F P     + +L ++ + + + 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
               P     +L +L+   +S NN             +L  LD + N
Sbjct: 483 EQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 16/254 (6%)

Query: 45  NNSINLCQWTGVTCGHRHQRVIGLDL-RHQSIRGFLSPFVGYLSFLRSINLVNNSLRA-- 101
           NN  +L        G     V  L L   ++           L  L ++ +    L    
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 102 ----EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN 157
               +I      L  + + +L +         + S        E  N K       ++ +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 158 LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS--GRIPSTRSHVRNLISFNVG 215
           L +           KG    S  +L +L+ ++++ N LS  G    +     +L   ++ 
Sbjct: 327 LKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 216 LNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL 275
            N    M      +  LE++    +         + ++L NL +  IS  +   +     
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 276 SNTTNLHKLDINRN 289
           +  ++L  L +  N
Sbjct: 442 NGLSSLEVLKMAGN 455

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 7/207 (3%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
            ++++L  N LR    +   +  +LQ L L+               S+L     + N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL-SGRIPSTRSHVR 207
                  S L   Q L   + +L       IG+L TL+E+NV  N + S ++P   S++ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL---PLDIGVNLPNLRFFIIS 263
           NL   ++  N+   ++   +  +  +  + +  +     +          +  L    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208

Query: 264 GNNLTGSL-QDSLSNTTNLHKLDINRN 289
            N  + ++ +  +     L    +   
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 6/188 (3%)

Query: 68  LDLRHQSIRGFLSP-FVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK 126
           LD +H +++          L  L  +++ +   R         L  L+ L +  N F   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 127 IPTN-LSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
              +  +   NL   + S  +LE   P   ++L   Q+LN++ N+           L++L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 186 QEINVNGNRLSGRIPSTRSHV-RNLISFNVGLNQFSG---MFPPINNISSLEYIFIHKNR 241
           Q ++ + N +         H   +L   N+  N F+        +  I     + +   R
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 242 YHGSLPLD 249
              + P D
Sbjct: 581 MECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 3/162 (1%)

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
           KIP NL    +    + S N L         +  + Q+L++++  ++     +  +LS L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHG 244
             + + GN +        S + +L          + +   PI ++ +L+ + +  N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI 286
               +   NL NL    +S N +       L     +  L++
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 3e-23
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 16/232 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+LR   +          LS L+ + +    L  E+P  +     L+ LTL  N     +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF---------QILNIAKNHLKGQLPAS 178
           P +++  + L +          E+P  +++             Q L +    ++  LPAS
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 179 IGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFI 237
           I NL  L+ + +  + LS  +     H+  L   ++        +PP     + L+ + +
Sbjct: 202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 238 HKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
                  +LPLDI   L  L    + G      L   ++       + +  +
Sbjct: 261 KDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 5e-23
 Identities = 41/210 (19%), Positives = 89/210 (42%), Gaps = 14/210 (6%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
             ++ L +  L  + P +   L  LQ++T+       ++P  + + + L     + N L 
Sbjct: 83  RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGN---------LSTLQEINVNGNRLSGRI 199
             +PA I++L + + L+I       +LP  + +         L  LQ + +    +   +
Sbjct: 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 200 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRF 259
           P++ ++++NL S  +  +  S + P I+++  LE + +       + P   G     L+ 
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKR 257

Query: 260 FIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            I+   +   +L   +   T L KLD+   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 81  PFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKF 140
               + S   ++    ++        +    +  N                +  +N    
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIE 61

Query: 141 EASNNKLEGEIPAEISNL--LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR 198
             +   L+      + +        L +    L  Q P     LS LQ + ++   L   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 199 IPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIG------- 251
           +P T      L +  +  N    +   I +++ L  + I        LP  +        
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 252 -VNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              L NL+   +    +  SL  S++N  NL  L I  +
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 2/142 (1%)

Query: 79  LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLV 138
            S     L  L+S+ L    +R  +P  + NL  L++L + N+  S  +   +     L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 139 KFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR 198
           + +          P         + L +        LP  I  L+ L+++++ G     R
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 199 IPSTRSHVRNLISFNVGLNQFS 220
           +PS  + +       V  +  +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L    IR  L   +  L  L+S+ + N+ L   +   + +L KL+ L L         
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P      + L +    +      +P +I  L + + L++       +LP+ I  L     
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 188 INVNGNRLSGRIP 200
           I V  +  +    
Sbjct: 306 ILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 36/214 (16%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGN---------LFKLQNLTL 118
           L L    +R  L   +  L+ LR +++       E+P  + +         L  LQ+L L
Sbjct: 132 LTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 119 TNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPAS 178
                   +P +++   NL   +  N+ L   +   I +L K + L++         P  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 179 IGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIH 238
            G  + L+ + +        +P                         I+ ++ LE + + 
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLD-----------------------IHRLTQLEKLDLR 285

Query: 239 KNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 272
                  LP  I   LP     ++  +      Q
Sbjct: 286 GCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQ 318

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 5e-23
 Identities = 40/266 (15%), Positives = 77/266 (28%), Gaps = 27/266 (10%)

Query: 43  SWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSL 99
           +WN +  L  W    GV   + + RV GL L     +G +   +G L+ L+ ++   +S 
Sbjct: 301 NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 100 RAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASNNKLE-----GEIPA 153
                                +          L     L   +   + +        I  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN 213
           +    LK   +    N +   +  +I  L+ LQ I    +  +    +      N     
Sbjct: 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS---- 474

Query: 214 VGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG--- 269
               +         +N+  L  + ++       LP  +  +LP L+   I+ N       
Sbjct: 475 -DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQ 532

Query: 270 ------SLQDSLSNTTNLHKLDINRN 289
                  L D       +    +  N
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 3e-21
 Identities = 40/262 (15%), Positives = 70/262 (26%), Gaps = 48/262 (18%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA------EIPHEVGNLFKLQNLTLTNN 121
            DL   +I     P +  +     I+L +  +         I   +  L KLQ +   N+
Sbjct: 401 SDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGN 181
            F+          +N         K         SNL     + +       QLP  + +
Sbjct: 459 PFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 182 LSTLQEINVNGNRLSG---------RIPSTRSHVRNLISFNVGLNQFSGM---------- 222
           L  LQ +N+  NR            R+         +  F +G N               
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 223 --------------FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
                                  L  + +  N+    +P D       +     S N L 
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 269 GSLQD-SLSNTTNLHKLDINRN 289
                 +  +   +  +D + N
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 29/245 (11%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK-LQNLTLTNNYFSGK 126
           LD  H  +R       G    L  + L  N +  EIP +       ++ L  ++N     
Sbjct: 578 LDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 127 IP--TNLSRCSNLVKFEASNNKLEGEIP-----AEISNLLKFQILNIAKNHLKGQLPASI 179
           IP   N      +   + S NK+  E        +    +    + ++ N ++       
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 180 GNLSTLQEINVNGNRLS-------GRIPSTRSHVRNLISFNVGLNQFSGMFPPI--NNIS 230
              S +  I ++ N ++               +   L + ++  N+ + +        + 
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFF------IISGNNLTGSLQDSLSNTTNLHKL 284
            L  + +  N +  S P     N   L+ F         GN +       ++   +L +L
Sbjct: 754 YLSNMDVSYNCFS-SFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 285 DINRN 289
            I  N
Sbjct: 812 QIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.3 bits (211), Expect = 9e-19
 Identities = 40/244 (16%), Positives = 83/244 (34%), Gaps = 28/244 (11%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPH--EVGNLFKLQNLTLTNNYFSG 125
           L L +  I      F  +   +  +   +N L+  IP+     +++ + ++  + N    
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 126 KIPT-----NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK-------G 173
           +        +  +  N      S N+++       +       + ++ N +         
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 174 QLPASIGNLSTLQEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQFSGMFPPINNISS 231
               +  N   L  I++  N+L+  +      + +  L + +V  N FS       N S 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 232 LEYI------FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD 285
           L+            NR     P  I    P+L    I  N++   + + L+    L+ LD
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIR-KVDEKLT--PQLYILD 833

Query: 286 INRN 289
           I  N
Sbjct: 834 IADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 30/246 (12%)

Query: 68  LDLRHQSIRGFLSPF-VGYLSFLRSINLVNNSLRAEIPH-----EVGNLFKLQNLTLTNN 121
           L   H  ++   + F    +  + S++   N + +E  +     +         +TL+ N
Sbjct: 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 122 YFSGKIPTNLSRCSNLVKFEASNNKLE-------GEIPAEISNLLKFQILNIAKNHLKGQ 174
                     +  S +     SNN +                N      +++  N L   
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742

Query: 175 LPASI--GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN------VGLNQFSGMFPP- 225
           L        L  L  ++V+ N  S   P+   +   L +F          N+    +P  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 226 INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT-GSLQDSLSN-TTNLHK 283
           I    SL  + I  N     +   +    P L    I+ N      +          ++ 
Sbjct: 802 ITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 284 LDINRN 289
           L  ++ 
Sbjct: 858 LLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 20/210 (9%), Positives = 52/210 (24%), Gaps = 8/210 (3%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            +   +++  N    +   +   +     N     + +  +   +L     +     +  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHS-LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
             +G +P  I  L + ++L+   +              T        +R+          
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG------SLPLDIGVNLPNLRF 259
               ++ +  L       P +  I     I +   +          +   I   L  L+ 
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQI 452

Query: 260 FIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              + +  T           N        N
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 51/264 (19%), Positives = 89/264 (33%), Gaps = 7/264 (2%)

Query: 32  EADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSF--L 89
            A   ++    ++  + NL            Q +                    L    +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 90  RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEG 149
            SINL  +       +       LQ L LT  + S ++P+ L   S L K   S NK E 
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

Query: 150 EIPAEISNLLKFQILNIAKNHLKGQL-PASIGNLSTLQEINVNGNRL--SGRIPSTRSHV 206
                 SN      L+I  N  + +L    + NL  L+E++++ + +  S        ++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 207 RNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
            +L S N+  N+   +          LE + +   R           NL  L+   +S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
            L  S +        L  L++  N
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 38/253 (15%), Positives = 86/253 (33%), Gaps = 32/253 (12%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           ++L+        S      S L+ ++L    L  E+P  +  L  L+ L L+ N F    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAE-ISNLLKFQILNIAKNHLK--GQLPASIGNLST 184
             + S   +L       N    E+    + NL   + L+++ + ++        + NLS 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP------------------- 225
           LQ +N++ N               L   ++   +                          
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 226 -------INNISSLEYIFIHKNRYHGSLPLDIGV--NLPNLRFFIISGNNLTGSLQDSLS 276
                   + + +L+++ +  N +             L  L   ++S  +L+   Q + +
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 277 NTTNLHKLDINRN 289
           +   ++ +D++ N
Sbjct: 498 SLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 26/227 (11%), Positives = 66/227 (29%), Gaps = 5/227 (2%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+     +    +     L  L  ++L    +         +  +L  L LT N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            T LS    L         +       + N    + L +  NH+             L+ 
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 188 INVNGNRLSGRIPSTRSHVRNL--ISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS 245
           ++   N +        S ++    +S N+  N  +G+ P   + +  + +     +    
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 246 LPLDI-GVNLPNLRFFIISGNNLTGSLQDSLSN--TTNLHKLDINRN 289
           +   +    + +L        +               ++  +++ ++
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 38/230 (16%), Positives = 89/230 (38%), Gaps = 10/230 (4%)

Query: 68  LDLRHQSIRGFLSP-FVGYLSFLRSINLVNNSLRA--EIPHEVGNLFKLQNLTLTNNYFS 124
           L ++  + R  L    +  L  LR ++L ++ +        ++ NL  LQ+L L+ N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 125 GKIPTNLSRCSNLVKFEASNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS 183
                    C  L   + +  +L+  +  +   NL   ++LN++ + L          L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 184 TLQEINVNGNRLSGRI---PSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHK 239
            LQ +N+ GN          ++   +  L    +     S +      ++  + ++ +  
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           NR   S  ++   +L  +   + + N+++  L   L   +    +++ +N
Sbjct: 510 NRLT-SSSIEALSHLKGIYLNL-ASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 7/209 (3%)

Query: 68  LDLRHQSIR--GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG 125
           LDL H  I      +  +  LS L+S+NL  N   +          +L+ L L       
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 126 KIPTN-LSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG---QLPASIGN 181
           K   +       L     S++ L+         L   Q LN+  NH      Q   S+  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNR 241
           L  L+ + ++   LS       + ++ +   ++  N+ +       +     Y+ +  N 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

Query: 242 YHGSLPLDIGVNLPNLRFFIISGNNLTGS 270
               +   +   L   R   +  N L  +
Sbjct: 535 IS-IILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 25/207 (12%), Positives = 52/207 (25%), Gaps = 3/207 (1%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            +    +    N L          L  L  L LT                 L     + N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
            L       +S     + L   +  +       + N  TL+ + +  N +S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 206 VRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
              L   +   N    +    ++++     + ++ N    +       +    +     G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 265 NNLTGSLQDSLSNTT--NLHKLDINRN 289
                 +   L N+T  +L        
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDM 238

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 42/222 (18%), Positives = 75/222 (33%), Gaps = 5/222 (2%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           +DL    ++   S      S L+ ++L    +          L  L NL LT N      
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQ 186
           P + S  ++L    A   KL       I  L+  + LN+A N +   +LPA   NL+ L 
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHKNRY 242
            ++++ N +     +    +R     N+ L    N    +         L  + +  N  
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
             ++      NL  L    +            +   + +  L
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 12/227 (5%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L +    ++ F  P +  L FL+S+ L  N     I  +   L  L  L L+ N  S   
Sbjct: 312 LSIIRCQLKQF--PTLD-LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSG 366

Query: 128 PTNLSR--CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPAS-IGNLST 184
             + S    ++L   + S N     + A    L + Q L+   + LK     S   +L  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRY 242
           L  ++++              + +L +  +  N F          N ++L ++ + K + 
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              +   +   L  L+   +S NNL        +   +L  LD + N
Sbjct: 486 E-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 12/260 (4%)

Query: 34  DRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSIN 93
           + L  + ++ +  +        +   H    V  + L   SI+      V      +S++
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLS 313

Query: 94  LVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE--GEI 151
           ++   L+ + P    +L  L++LTLT N  S  I        +L   + S N L   G  
Sbjct: 314 IIRCQLK-QFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 152 PAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP-STRSHVRNLI 210
                     + L+++ N     + A+   L  LQ ++   + L      S    +  L+
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 211 SFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269
             ++        F  I   ++SL  + +  N +  +   ++  N  NL F  +S   L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 270 SLQDSLSNTTNLHKLDINRN 289
                      L  L+++ N
Sbjct: 488 ISWGVFDTLHRLQLLNMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 34/255 (13%), Positives = 84/255 (32%), Gaps = 11/255 (4%)

Query: 39  LAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLR--SINLVN 96
           L  N  +++I       +   H H+ ++G     +++  F    +  L  +      L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 97  NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEIS 156
            +  ++   +   L  +  ++L           ++ +            +L+     ++ 
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 157 NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV--RNLISFNV 214
            L   + L +  N     +      L +L  ++++ N LS     + S +   +L   ++
Sbjct: 329 FL---KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 215 GLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274
             N    M      +  L+++    +           ++L  L +  IS  N        
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 275 LSNTTNLHKLDINRN 289
               T+L+ L +  N
Sbjct: 444 FLGLTSLNTLKMAGN 458

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 5/186 (2%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASN 144
            + LR ++L  N     +      L +LQ+L   ++        +       L+  + S 
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPSTR 203
              + +       L     L +A N  K    +++  N + L  ++++  +L        
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 204 SHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
             +  L   N+  N    +     N + SL  +    NR   +    +     +L FF +
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552

Query: 263 SGNNLT 268
           + N++ 
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 9/227 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA--EIPHEVGNLFKLQNLTLTNNYFSG 125
           L L               L  L  ++L  N+L       +       L++L L+ N    
Sbjct: 333 LTLTMNKGSISFKK--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAE-ISNLLKFQILNIAKNHLKGQLPASIGNLST 184
            +  N      L   +  ++ L+         +L K   L+I+  + K         L++
Sbjct: 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 185 LQEINVNGNRLSGRIPS-TRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRY 242
           L  + + GN       S   ++  NL   ++   Q   +     + +  L+ + +  N  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              L       L +L     S N +  S         +L   ++  N
Sbjct: 510 L-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 4/179 (2%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGK 126
           LDL         + F+G L  L+ ++  +++L+         +L KL  L ++       
Sbjct: 381 LDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
                   ++L   + + N  +    + + +N      L+++K  L+         L  L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYH 243
           Q +N++ N L     S  + + +L + +   N+       + +   SL +  +  N   
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 9/210 (4%)

Query: 87  SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146
           S  ++I+L  N L+    +   N  +LQ L L+                +L     + N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSH 205
           ++   P   S L   + L   +  L       IG L TL+++NV  N +   ++P+  S+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 206 VRNLISFNVGLNQFSGMFPPI-----NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF 260
           + NL+  ++  N    +          N      + +  N     +       +  L   
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHEL 209

Query: 261 IISGNNLTGSL-QDSLSNTTNLHKLDINRN 289
            + GN  + ++ +  L N   LH   +   
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.0 bits (201), Expect = 8e-18
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 15/222 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L   +I       +  L+ + S+NL  N   +++   + N+  L  LT+T +      
Sbjct: 115 LYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT 171

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  ++  ++L     + N++E   P  +++L          N +       + N++ L  
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNS 225

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           + +  N+++   P   +++  L    +G NQ S +   + +++ L+ + +  N+      
Sbjct: 226 LKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISV 282

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L+   NL  L    ++ N L     + +   TNL  L +++N
Sbjct: 283 LN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L        LSP    ++ L  + +  + ++   P  + NL  L +L+L  N      
Sbjct: 137 LNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-- 191

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            + L+  ++L  F A  N++    P  ++N+ +   L I  N +     + + NLS L  
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTW 247

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           + +  N++S    +    +  L   NVG NQ S     +NN+S L  +F++ N+      
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             IG  L NL    +S N++T      L++ + +   D    
Sbjct: 305 EVIG-GLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 15/204 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L+      L   S+   +      L  +  L +     +      +   +NL     + N
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN 76

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           ++    P  +SNL+K   L I  N +     +++ NL+ L+E+ +N + +S   P   ++
Sbjct: 77  QITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPL--AN 130

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           +  + S N+G N       P++N++ L Y+ + +++     P+    NL +L    ++ N
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNYN 187

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
            +       L++ T+LH      N
Sbjct: 188 QIEDI--SPLASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 6e-13
 Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 16/202 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L +    ++      +  L+ L S++L  N +    P  + +L  L   T   N  +   
Sbjct: 160 LTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  ++  + L   +  NNK+    P  ++NL +   L I  N +      ++ +L+ L+ 
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSL 246
           +NV  N++S    S  +++  L S  +  NQ        I  +++L  +F+ +N      
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 247 PLDIGVNLPNLRFFIISGNNLT 268
           PL    +L  +     +   + 
Sbjct: 328 PLA---SLSKMDSADFANQVIK 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 9e-17
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            S L  + +  N L   +P     L   Q L++++N  +  +P   S    L K  A NN
Sbjct: 120 PSGLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPS---ELCKLWAYNN 171

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           +L   +P   S L   Q L+++ N L   LP     L  L   N     L          
Sbjct: 172 QLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS----- 221

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
              L    V  N+ + +       S L+ + +  NR   SLP+        L    +  N
Sbjct: 222 --GLKELIVSGNRLTSLPV---LPSELKELMVSGNR-LTSLPMLPS----GLLSLSVYRN 271

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
            LT  L +SL + ++   +++  N
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 25/159 (15%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG--KIPTNLSR---------- 133
            S L+ +++ +N L   +P     L     L   NN  +    +P+ L            
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSEL---YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 235

Query: 134 ----CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
                S L +   S N+L   +P   S L     L++ +N L  +LP S+ +LS+   +N
Sbjct: 236 LPVLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVN 290

Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN 228
           + GN LS R       + +   ++  + +F         
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 27/178 (15%)

Query: 112 KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHL 171
               L +  +  +  +P  L   +++      +N L   +PA    L   + L ++ N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQL 93

Query: 172 KGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISS 231
              LP     L  L   +     L             L    +  NQ +   P       
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS-LP--VLPPG 142

Query: 232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L+ + +  N+   SLP      L  L       N LT SL       + L +L ++ N
Sbjct: 143 LQELSVSDNQ-LASLPALPS-ELCKLW---AYNNQLT-SLPMLP---SGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 40/157 (25%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 133 RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG 192
             +         + L   +P  +   +    L I  N+L   LPA    L TL    V+G
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAHI--TTLVIPDNNLT-SLPALPPELRTL---EVSG 90

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV 252
           N+L+  +P     +  L  F+  L             S L  ++I  N+   SLP    V
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP------ALPSGLCKLWIFGNQLT-SLP----V 138

Query: 253 NLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             P L+   +S N L  SL    S    L KL    N
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            S L+ + +  N L   +P     L   + L ++ N  +  +P   S    L+      N
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSEL---KELMVSGNRLT-SLPMLPS---GLLSLSVYRN 271

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           +L   +P  + +L     +N+  N L  +   ++  +++    +    R      S    
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 206 VRNLISFN 213
            R L    
Sbjct: 331 TRALHLAA 338

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL    +    +  +   + L  +NL +N L  E   ++ +L  L+ L L NNY     
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV---- 92

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
              L    ++    A+NN +   +          + + +A N +        G  S +Q 
Sbjct: 93  -QELLVGPSIETLHAANNNIS-RVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 188 INVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246
           +++  N +         +    L   N+  N            + L+ + +  N+    +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             +   +   + +  +  N L   ++ +L  + NL   D+  N
Sbjct: 207 GPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 30/188 (15%), Positives = 77/188 (40%), Gaps = 11/188 (5%)

Query: 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162
           I     N  + +   +T++     + +      N+ + + S N L     A+++   K +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 163 ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222
           +LN++ N L       + +LSTL+ +++N N +   +        ++ + +   N  S +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNISRV 114

Query: 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNTTNL 281
               +     + I++  N+      LD G     +++  +  N +   +  +  +++  L
Sbjct: 115 --SCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 282 HKLDINRN 289
             L++  N
Sbjct: 172 EHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 28/205 (13%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            +  +   + ++SL+  +     + + ++ L L+ N  S     +L+  + L     S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
            L      ++ +L   + L++  N+++      +    +++ ++   N +S R+    S 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SR 118

Query: 206 VRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
            +   +  +  N+ + +        S ++Y+ +  N        ++  +   L    +  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
           N +   ++  +     L  LD++ N
Sbjct: 179 NFIY-DVKGQVVF-AKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 22/203 (10%), Positives = 67/203 (33%), Gaps = 7/203 (3%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
              + +++  NN++   +    G     +N+ L NN  +     +    S +   +   N
Sbjct: 98  GPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 146 KLEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS 204
           +++        ++    + LN+  N +   +   +   + L+ ++++ N+L+  +     
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
               +   ++  N+   +   +    +LE+  +  N +H     D       ++      
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 265 NNLTGSLQDSLSNTTNLHKLDIN 287
                   +       L      
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 6/204 (2%)

Query: 84  GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG-KIPTNLSRCSNLVKFEA 142
                 ++I L NN +      + G   ++Q L L  N           +    L     
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
             N +  ++  ++    K + L+++ N L   +     + + +  I++  N+L   I   
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
               +NL  F++  N F           +     + K      L                
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHY 291

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDI 286
                             L     
Sbjct: 292 GAYCCEDLPAPFADRLIALGHHHH 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           + + +  I       +  L+ L  + L NN +    P  + NL  L  L L++N  S   
Sbjct: 95  ILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-- 148

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            + LS  ++L +    N   +      ++NL   + L+I+ N +     + +  L+ L+ 
Sbjct: 149 ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLES 203

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           +    N++S   P     + NL   ++  NQ       + ++++L  + +  N+     P
Sbjct: 204 LIATNNQISDITPL--GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP 260

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L     L  L    +  N ++      L+  T L  L++N N
Sbjct: 261 LS---GLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 297

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 16/222 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L    ++      +  L+ L  ++L NN +    P  +  L KL  L L  N  S   
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  L+  + L   E + N+LE   P  ISNL     L +  N++    P  + +L+ LQ 
Sbjct: 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           +    N++S    S+ +++ N+   + G NQ S    P+ N++ +  + ++   +  + P
Sbjct: 336 LFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWT-NAP 391

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++   N+       +           ++S+  +  + DI  N
Sbjct: 392 VNYKANVSIPN--TVKNVTGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 16/217 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L   +  I       +G L+ L  ++L  N L  +    + +L  L +L L NN  S   
Sbjct: 204 LIATNNQISDI--TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 259

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  LS  + L + +   N++    P  ++ L     L + +N L+    + I NL  L  
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTY 313

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           + +  N +S   P   S +  L       N+ S     + N++++ ++    N+     P
Sbjct: 314 LTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTP 370

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
           L    NL  +    ++    T +  +  +N +  + +
Sbjct: 371 LA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 19/222 (8%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
             L   ++   +S     L  + ++      +  +    V  L  L  +  +NN  +   
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  L   + LV    +NN++    P  ++NL     L +  N +       + NL+ L  
Sbjct: 85  P--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNR 138

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           + ++ N +S    S  S + +L   + G         P+ N+++LE + I  N+      
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSNKVSDISV 194

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L     L NL   I + N ++      L   TNL +L +N N
Sbjct: 195 LA---KLTNLESLIATNNQISDI--TPLGILTNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 33/201 (16%)

Query: 109 NLFKLQNLTLTNNYFSGKIP--------------------TNLSRCSNLVKFEASNNKLE 148
            L +     L     +  +                       +   +NL +   SNN+L 
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 81

Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN 208
              P  + NL K   + +  N +       + NL+ L  + +  N+++   P    ++ N
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPL--KNLTN 135

Query: 209 LISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
           L    +  N  S     ++ ++SL+ +    N+     PL    NL  L    IS N ++
Sbjct: 136 LNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKPLA---NLTTLERLDISSNKVS 190

Query: 269 GSLQDSLSNTTNLHKLDINRN 289
                 L+  TNL  L    N
Sbjct: 191 D--ISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 113 LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK 172
           L + T+T +    +I    +  +  +K       +   +    ++L +   L   +  +K
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 173 GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL 232
                 +  L+ L +IN + N+L+   P    ++  L+   +  NQ +    P+ N+++L
Sbjct: 60  S--IDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIAD-ITPLANLTNL 114

Query: 233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             + +  N+     PL    NL NL    +S N ++     +LS  T+L +L     
Sbjct: 115 TGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L   +  +       +  L+ +  ++  +N +    P  + NL ++  L L +  ++   
Sbjct: 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
               +  S     +     L    PA IS+   +   +I  N             S    
Sbjct: 392 VNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVT 448

Query: 188 INVNGNRLSGRIP 200
           I       SG + 
Sbjct: 449 IGKGTTTFSGTVT 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 11/233 (4%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL    +R   S        L+ ++L    ++        +L  L  L LT N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK-GQLPASIGNLSTLQ 186
               S  S+L K  A    L       I +L   + LN+A N ++  +LP    NL+ L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHKNRY 242
            ++++ N++     +    +  +   N+ L    N  + + P       L  + +  N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 243 HGSLPLDIGVNLPNLRF------FIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             ++       L  L           +  NL    + +L    NL   +    
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 37/209 (17%), Positives = 81/209 (38%), Gaps = 9/209 (4%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEAS 143
           L  L+ +   +N        EV +L  L+ L L+ N   F G    +    ++L   + S
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPST 202
            N +   + +    L + + L+   ++LK     S+  +L  L  ++++           
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 203 RSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF 260
            + + +L    +  N F   F P     + +L ++ + + +    L      +L +L+  
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 499

Query: 261 IISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            ++ N L           T+L K+ ++ N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 40/265 (15%), Positives = 83/265 (31%), Gaps = 16/265 (6%)

Query: 34  DRLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDL-RHQSIRGFLSPFVGYLSFLRSI 92
             + L  +   NN  +L        G     V  L L   ++           L  L ++
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 93  NLVNNSL------RAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146
            +    L        +I      L  + + +L +         + S        E  N K
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCK 315

Query: 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS--GRIPSTRS 204
                  ++ +L +   L    N           +L +L+ ++++ N LS  G    +  
Sbjct: 316 FGQFPTLKLKSLKR---LTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
              +L   ++  N    M      +  LE++    +         + ++L NL +  IS 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
            +   +     +  ++L  L +  N
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGN 455

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 44/226 (19%), Positives = 79/226 (34%), Gaps = 14/226 (6%)

Query: 69  DLRHQSIRGFLS-PFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
            L   +I       +      L  +N                L  L+ LT T+N      
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAF 341

Query: 128 PTNLSRCSNLVKFEASNNKLE--GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
                   +L   + S N L   G            + L+++ N +   + ++   L  L
Sbjct: 342 S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 186 QEINVNGNRLSGRIP-STRSHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYH 243
           + ++   + L      S    +RNLI  ++        F  I N +SSLE + +  N + 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +   DI   L NL F  +S   L      + ++ ++L  L++  N
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 9/211 (4%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNNYFSG 125
           L        G     V  L  L  ++L  N L  +            L+ L L+ N    
Sbjct: 330 LTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLST 184
            + +N      L   +  ++ L+      +  +L     L+I+  H +         LS+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 185 LQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRY 242
           L+ + + GN           + +RNL   ++   Q   + P   N++SSL+ + +  N+ 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
             S+P  I   L +L+   +  N    S   
Sbjct: 507 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 34/207 (16%), Positives = 76/207 (36%), Gaps = 7/207 (3%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
            ++++L  N LR    +   +  +LQ L L+               S+L     + N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL-SGRIPSTRSHVR 207
                  S L   Q L   + +L       IG+L TL+E+NV  N + S ++P   S++ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYH---GSLPLDIGVNLPNLRFFIIS 263
           NL   ++  N+   ++   +  +  +  + +  +        +       +  L    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208

Query: 264 GNNLTGSL-QDSLSNTTNLHKLDINRN 289
            N  + ++ +  +     L    +   
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
           IP NL    +    + S N L         +  + Q+L++++  ++     +  +LS L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGS 245
            + + GN +        S + +L          + +   PI ++ +L+ + +  N     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH----KLDINRN 289
              +   NL NL    +S N +       L     +      LD++ N
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 32/240 (13%), Positives = 78/240 (32%), Gaps = 25/240 (10%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
             +   S++  L+        ++ ++L  N L      ++    KL+ L L++N     +
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 128 P-----------------TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH 170
                               L    ++    A+NN +   +          + + +A N 
Sbjct: 75  DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQGK--KNIYLANNK 131

Query: 171 LKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPPINNI 229
           +        G  S +Q +++  N +         +    L   N+  N            
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF 190

Query: 230 SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           + L+ + +  N+    +  +   +   + +  +  N L   ++ +L  + NL   D+  N
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 30/188 (15%), Positives = 77/188 (40%), Gaps = 11/188 (5%)

Query: 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ 162
           I     N  + +   +T++     + +      N+ + + S N L     A+++   K +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 163 ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM 222
           +LN++ N L       + +LSTL+ +++N N +   +        ++ + +   N  S +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNISRV 114

Query: 223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNTTNL 281
               +     + I++  N+      LD G     +++  +  N +   +  +  +++  L
Sbjct: 115 --SCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 282 HKLDINRN 289
             L++  N
Sbjct: 172 EHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 29/222 (13%), Positives = 79/222 (35%), Gaps = 24/222 (10%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            +  +   + ++SL+  +     + + ++ L L+ N  S     +L+  + L     S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLK--GQLPA--------------SIGNLSTLQEIN 189
            L      ++ +L   + L++  N+++     P+              S       + I 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLP 247
           +  N+++            +   ++ LN+   +       +  +LE++ +  N  +    
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--- 183

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +   V    L+   +S N L   +     +   +  + +  N
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 28/251 (11%), Positives = 64/251 (25%), Gaps = 34/251 (13%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA-EIPHEVGNLFKLQNLTLTNNYFSGK 126
           + L +  I        G  S ++ ++L  N +          +   L++L L  N+    
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
           +   +   + L   + S+NKL   +  E  +      +++  N L   +  ++     L+
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246
             ++ GN             +N     V       +        ++  +  +       L
Sbjct: 241 HFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 247 PLDI----------------------------GVNLPNLRFFIISGNNLTGSLQDSLSNT 278
           P                                 N    R            +       
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 279 TNLHKLDINRN 289
                L+  + 
Sbjct: 360 QAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 28/227 (12%), Positives = 65/227 (28%), Gaps = 11/227 (4%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L++  I           + L++++L +N L   +  E  +   +  ++L NN     I
Sbjct: 174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
              L    NL  F+   N        +  +  + ++  +AK  +K     +    +    
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGL-----NQFSGMFPPINNISSLEYIFIHKNRY 242
            +                +  L      L     ++   +     N +    I   K +Y
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             ++   + +              L   + +       L        
Sbjct: 349 R-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 8e-14
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 27/225 (12%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L L   ++   L   +     +  + +  N+L   +P    +L   + L   +N  S  +
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TL 115

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P   +   +L   +  NN+L   +P   + L   + +N   N L   LP    +L  L  
Sbjct: 116 PELPASLKHL---DVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSLEVL-- 165

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYH---G 244
            +V  N+L+  +P       +L + +V  N    +          E   I          
Sbjct: 166 -SVRNNQLT-FLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +P +I  +L      I+  N L+  +++SLS  T        R 
Sbjct: 221 HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.5 bits (149), Expect = 7e-11
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
           L  IN  NN L   +P    +L   + L++ NN  +  +P       +L   + S N LE
Sbjct: 142 LEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPE---SLEALDVSTNLLE 193

Query: 149 GEIPAEISNLLKFQ----ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS 204
             +PA        +         +N +   +P +I +L     I +  N LS RI  + S
Sbjct: 194 -SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKN 240
                  ++     FS      N +       +   
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 52/249 (20%), Positives = 86/249 (34%), Gaps = 32/249 (12%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LDL H  +    S     L  L+ +NL  N +          L  LQ L L+ N      
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            +N      +   +   N +          L K Q L++  N L      +I  + ++ +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 188 INVNGNRLSG---------------------RIPSTRSHVRNLISFNVGLNQFSGMFPP- 225
           I ++GN+L                        I      V +L    +  N+FS      
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 226 -INNISSLEYIFIHKNR----YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN 280
             +   SLE +F+ +N     +   L  D+   L +L+   ++ N L        S+ T 
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 281 LHKLDINRN 289
           L  L +N N
Sbjct: 506 LRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L +  I          L  L+ +NL  N L          L K+  + L  N+ +   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 128 PTNLSRCSNLVKFEASNNKLEG---------------EIPAEISNLLKFQILNIAKNHLK 172
                    L   +  +N L                 ++       L   ++++++N L+
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 173 G-QLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPP----- 225
              +   +  +  LQ + +N NR S      T S   +L    +G N     +       
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
               +S L+ ++++ N  + SLP  +  +L  LR   ++ N LT    + L    NL  L
Sbjct: 475 VFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 285 DINRN 289
           DI+RN
Sbjct: 532 DISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 16/209 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASN 144
           L+    + L  N +R         L +LQ L L + Y    I         NL   +  +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 145 NKLEGEIPAEI-SNLLKFQILNIAKNHLKGQL--PASIGNLSTLQEINVNGNRLSG-RIP 200
           +K+   +  +    L     L +    L   +       NL  L  ++++ N++    + 
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 201 STRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNL-- 254
            +   + +L S +   NQ          P+    +L +  +  N  +  + +D G  +  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 255 ---PNLRFFIISGNNLTGSLQDSLSNTTN 280
                L    +SGN  T  +  + SN  +
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAIS 229

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 19/241 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFK--LQNLTLTNNYFSG 125
                 +I    +  +     +       ++++    +    L +  +++L L++ +   
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
                     +L     + NK+          L   Q+LN++ N L     ++   L  +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS--GMFPPI-------NNISSLE--- 233
             I++  N ++     T   +  L + ++  N  +     P I       N + +L    
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 234 ----YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNTTNLHKLDINR 288
                I + +NR      L   + +P+L+  I++ N  +  S   + S   +L +L +  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 289 N 289
           N
Sbjct: 461 N 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 29/202 (14%)

Query: 93  NLVNNSLR--AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGE 150
            +         ++P     L   + L L+ NY      ++      L   E  +      
Sbjct: 7   RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 151 IPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL 209
           I  E   NL   +IL++  + +    P +   L  L E+ +    LS  +          
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG------ 117

Query: 210 ISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269
                             N+ +L  + + KN+            L +L+    S N +  
Sbjct: 118 ---------------YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 270 SLQDSLSN--TTNLHKLDINRN 289
             +  L       L    +  N
Sbjct: 163 VCEHELEPLQGKTLSFFSLAAN 184

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 11/185 (5%)

Query: 88  FLRSINLVNNSLRA-EIPHEVGNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNN 145
               I+L  N L   +I + +  +  LQ L L  N FS        S   +L +     N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 146 KLEGEIPAEI-----SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP 200
            L+     E+       L   Q+L +  N+L    P    +L+ L+ +++N NRL+    
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 201 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF 260
           +      NL   ++  NQ     P  +   SL  + I  N++     L   +N  N    
Sbjct: 522 NDLPA--NLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFICECELSTFINWLNHTNV 577

Query: 261 IISGN 265
            I+G 
Sbjct: 578 TIAGP 582

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 49/225 (21%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 78  FLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS----- 132
           F++P     +FL+     +++L  E+P E  N+          + +    P         
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 133 --------RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLST 184
                         + E +N  L   +P    +L   + L  + N L  +LP    +L +
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKS 115

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG 244
           L   N N   LS   P        L    V  NQ     P + N S L+ I +  N    
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK- 166

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            LP       P+L F     N L   L   L N   L  +  + N
Sbjct: 167 KLP----DLPPSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 34/234 (14%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L + +  +     P +   SFL+ I++ NNSL+ ++P    +L   + +   NN    ++
Sbjct: 136 LGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-EL 188

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
           P  L     L    A NN L+ ++P    +L   + +    N L+      + NL  L  
Sbjct: 189 P-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTT 241

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           I  + N L   +P       +L + NV  N  + +     +++ L+      +      P
Sbjct: 242 IYADNNLLK-TLP---DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 248 ----LDIGVN--------LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
               L+   N         P+L    +S N L   L         L +L  + N
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG--KIPTNLSR---------- 133
              L ++N+ +N L  ++P    +L     L ++ N FSG  ++P NL            
Sbjct: 256 PPSLEALNVRDNYLT-DLPELPQSL---TFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311

Query: 134 ----CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN 189
                 +L +   SNNKL  E+PA    L   + L  + NHL  ++P    NL  L   +
Sbjct: 312 LCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL---H 363

Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLD 249
           V  N L    P     V +L      +N      P      +L+ + +  N      P  
Sbjct: 364 VEYNPLR-EFPDIPESVEDLR-----MNSHLAEVP--ELPQNLKQLHVETNPLR-EFPDI 414

Query: 250 IGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              ++ +LR   ++   +    + +   T  L       +
Sbjct: 415 PE-SVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 37/217 (17%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
              L SI   NN L  E   E+ NL  L  +   NN     +P       +L      +N
Sbjct: 214 PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDN 267

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKG-------------QLPASIGNLSTLQEINVNG 192
            L  ++P    +L    +     + L               ++ +      +L+E+NV+ 
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 326

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV 252
           N+L   +P+       L       N  + +        +L+ + +  N      P     
Sbjct: 327 NKLI-ELPAL---PPRLERLIASFNHLAEV---PELPQNLKQLHVEYNPLR-EFPDIPE- 377

Query: 253 NLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++ +LR      N+    + +      NL +L +  N
Sbjct: 378 SVEDLRM-----NSHLAEVPELPQ---NLKQLHVETN 406

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 8/226 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L LR   ++         LS L  +++  N +   + +   +L+ L++L + +N     I
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YI 143

Query: 128 PTN-LSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
                S  ++L +       L   IP E  S+L    +L +   ++      S   L  L
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYH 243
           + + ++       +     +  NL S ++     +   P   + ++  L ++ +  N   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            ++   +   L  L+   + G  L      +      L  L+++ N
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 10/208 (4%)

Query: 87  SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146
           +  R ++L  N ++     E  +   L+ L L  N  S   P   +   NL      +N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 147 LEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           L+  IP  + + L     L+I++N +   L     +L  L+ + V  N L        S 
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 206 VRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261
           + +L    +     +          +++  L  + +     + ++       L  L+   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEAL---SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           IS      ++  +     NL  L I   
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 26/205 (12%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           L+ L  + L   +L   IP E   +L  L  L L +   +     +  R   L   E S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS 204
                 +       L    L+I   +L      ++ +L  L+ +N++ N +S  I     
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG--- 265

Query: 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
                       +    +         L+ I +   +    +       L  LR   +SG
Sbjct: 266 ------------SMLHEL-------LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
           N LT   +    +  NL  L ++ N
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGK 126
           L++ H      ++P   Y   L S+++ + +L   +P+    +L  L+ L L+ N  S  
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
             + L     L + +    +L   +       L   ++LN++ N L     +   ++  L
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 186 QEINVNGNRLS 196
           + + ++ N L+
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 27/147 (18%)

Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
              +    +P  I      ++L++ KN +K        +   L+E+ +N N +S      
Sbjct: 19  HRKRFV-AVPEGIPTET--RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS------ 69

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
                      V    F+ +        +L  + +  NR    +PL +   L NL    I
Sbjct: 70  ----------AVEPGAFNNL-------FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S N +   L     +  NL  L++  N
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDN 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 8/224 (3%)

Query: 68  LDLRHQSIRGF-LSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSG 125
           L+L     +   ++     L+ L+++ + N    +EI       L  L  L +       
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
               +L    ++       ++    +      L   + L +   +L     + +      
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS 245
             +     R S     + + +  L+ + + L++       +N +              G 
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +          +R   I    L   L    S    + ++ +  +
Sbjct: 283 V------ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 51/292 (17%), Positives = 92/292 (31%), Gaps = 17/292 (5%)

Query: 3   NCISNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRH 62
                  L          LL   L     E D  +L  +  +N S +             
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES--DVVSELGKVET 285

Query: 63  QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY 122
             +  L +    +   LS     L  ++ I + N+ +         +L  L+ L L+ N 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 123 FSGKIPTN---LSRCSNLVKFEASNNKLE--GEIPAEISNLLKFQILNIAKNHLKGQLPA 177
              +   N        +L     S N L    +    +  L     L+I++N     +P 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFI 237
           S      ++ +N++   +          +  L   N  L+ FS        +  L+ ++I
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS------LFLPRLQELYI 458

Query: 238 HKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            +N+      L      P L    IS N L           T+L K+ ++ N
Sbjct: 459 SRNKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
            IP+ L+  + +   + S NK+      ++      Q+L +  + +      +  +L +L
Sbjct: 19  SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYH 243
           + ++++ N LS    S    + +L   N+  N +  +       N+++L+ + I      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             +       L +L    I   +L      SL +  ++H L ++ +
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 32/205 (15%), Positives = 79/205 (38%), Gaps = 9/205 (4%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
               +  + S    IP  +     +++L L+ N  +     +L  C+NL      ++++ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 149 GEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHV 206
             I  +   +L   + L+++ NHL     +  G LS+L+ +N+ GN      + S   ++
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 207 RNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
            NL +  +G  +            ++SL  + I       +       ++ ++    +  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
           +     L+      +++  L++   
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 4/207 (1%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            + ++S++L  N +      ++     LQ L L ++  +           +L   + S+N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIP-STR 203
            L     +    L   + LN+  N  +   + +   NL+ LQ + +        I     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 204 SHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
           + + +L    +            + +I  + ++ +H +     L       L ++R+  +
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
              NL       L        +     
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 68  LDLRH---QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS 124
           L L     +S++      +  L  L S+++  N+    +P       K++ L L++    
Sbjct: 366 LVLSQNHLRSMQKTGEILLT-LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 125 GKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLST 184
             + T +     L   + SNN L+      +  L   Q L I++N LK  LP +      
Sbjct: 424 -VVKTCIP--QTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TLPDA-SLFPV 474

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF 219
           L  + ++ N+L          + +L    +  N +
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNK 146
              + L +N L++        L +L  L+L++N   F G    +    ++L   + S N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPSTRSH 205
           +   + +    L + + L+   ++LK     S+  +L  L  ++++            + 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 206 VRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263
           + +L    +  N F   F P     + +L ++ + + +    L      +L +L+   +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 264 GNNLTGSLQDSLSNTTNLHKLDINRN 289
            NN             +L  LD + N
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 10/205 (4%)

Query: 90  RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE- 148
             I   +  L + +P  +        L L +N           + + L K   S+N L  
Sbjct: 10  TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 149 GEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR--SH 205
               ++        + L+++ N +   + ++   L  L+ ++   + L  ++        
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 124

Query: 206 VRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
           +RNLI  ++        F  I N +SSLE + +  N +  +   DI   L NL F  +S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
             L      + ++ ++L  L+++ N
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHN 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 47/257 (18%), Positives = 96/257 (37%), Gaps = 23/257 (8%)

Query: 51  CQWTGVTCGHRHQRVI---------GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA 101
           C  T + C  +    +          L+L    ++         L+ L  ++L +N L  
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 102 -EIPHEV-GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNL 158
                +       L+ L L+ N     + +N      L   +  ++ L+      +  +L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 159 LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLN 217
                L+I+  H +         LS+L+ + + GN           + +RNL   ++   
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 218 QFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
           Q        F   N++SSL+ + +  N +  SL       L +L+    S N++  S + 
Sbjct: 186 QLEQLSPTAF---NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 274 SLSN-TTNLHKLDINRN 289
            L +  ++L  L++ +N
Sbjct: 242 ELQHFPSSLAFLNLTQN 258

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 108 GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA 167
             +  L  +TL N   +  + T +    N+     +N       P  IS L   + L I 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN 227
              +      ++  L++L  ++++ +     I +  + +  + S ++  N       P+ 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269
            +  L+ + I  +  H    ++   + P L         + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L + +       +P    LS L  + ++   + ++    +  L  L  L ++++     I
Sbjct: 71  LTINNIHATN-YNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            T ++    +   + S N    +I   +  L + + LNI  + +       I +   L +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 188 INVNGNRLSG 197
           +      + G
Sbjct: 186 LYAFSQTIGG 195

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
            +     NL   S+   +      L  +  +   N+     +   +    N+ K   + N
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 75

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           KL    P  ++NL     L + +N +K  L  S+ +L  L+ +++  N +S  I     H
Sbjct: 76  KLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DINGL-VH 129

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           +  L S  +G N+ +     ++ ++ L+ + +  N+    +PL     L  L+   +S N
Sbjct: 130 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLYLSKN 185

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
           +++  L+ +L+   NL  L++   
Sbjct: 186 HIS-DLR-ALAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 65  VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS 124
            I  +L+ +S+          L+ +  I   N+ ++  +   +  L  +  L L  N  +
Sbjct: 23  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 78

Query: 125 GKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLST 184
             I   L+   NL       NK++ ++ + + +L K + L++  N +   +   + +L  
Sbjct: 79  -DI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQ 132

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG 244
           L+ + +  N+++    +  S +  L + ++  NQ S +  P+  ++ L+ +++ KN    
Sbjct: 133 LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD 189

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN 287
              L     L NL    +          +  SN    + +   
Sbjct: 190 LRALA---GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 12/161 (7%)

Query: 129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI 188
                 +  +K       +   +    + L     +    + +K  +   I  L  + ++
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPL 248
            +NGN+L+  I    ++++NL    +  N+   +   + ++  L+ + +  N       L
Sbjct: 71  FLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDINGL 127

Query: 249 DIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
               +LP L    +  N +T      LS  T L  L +  N
Sbjct: 128 V---HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 33/224 (14%), Positives = 80/224 (35%), Gaps = 15/224 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           + +  Q+   +       L+  + +   N+++R      + +  +++ L L +       
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI-GNLSTL 185
               +    + K     N +   +P  +  N+    +L + +N L   LP  I  N   L
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS 245
             ++++ N L      T     +L +  +  N+ + +   ++ I SL +  +  N     
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL---- 197

Query: 246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             L        +     S N++   ++  ++    L  L +  N
Sbjct: 198 --LSTLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 17/224 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L    I    +    Y   ++ + +  N++R   PH   N+  L  L L  N  S  +
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 128 PTNL-SRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTL 185
           P  +      L     SNN LE  I  +        Q L ++ N L   +   +  + +L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 186 QEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGS 245
              NV+ N LS     T +    +   +   N  + +  P+N    L  + +  N     
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT-- 239

Query: 246 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
                 +N P L    +S N L   +         L +L I+ N
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 85  YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           Y      +++   +       E   L   + +T  N+         L     +     ++
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 145 NKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
            ++E EI     +     Q L +  N ++   P    N+  L  + +  N LS       
Sbjct: 79  LQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 204 SHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
            +   L + ++  N    +        +SL+ + +  NR    + L     +P+L    +
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANV 193

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S N L+     +L+    + +LD + N
Sbjct: 194 SYNLLS-----TLAIPIAVEELDASHN 215

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 7/189 (3%)

Query: 103 IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKF 161
           I   +       ++ +                +N       N+ +  ++PA +  +  + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 162 QILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221
           ++LN+    ++     +     T+Q++ +  N +    P    +V  L    +  N  S 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 222 MFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN 280
           +   I +N   L  + +  N     +  D      +L+   +S N LT      LS   +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPS 187

Query: 281 LHKLDINRN 289
           L   +++ N
Sbjct: 188 LFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/204 (13%), Positives = 68/204 (33%), Gaps = 15/204 (7%)

Query: 84  GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
             +  L   N+  N L       +     ++ L  ++N  +  +   +     L   +  
Sbjct: 183 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 234

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           +N L  +    + N      ++++ N L+  +      +  L+ + ++ NRL   +    
Sbjct: 235 HNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 204 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263
             +  L   ++  N    +         LE +++  N    +L L        L+   +S
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLS 347

Query: 264 GNNLTGSLQDSLSNTTNLHKLDIN 287
            N+   +   +L        +D  
Sbjct: 348 HNDWDCNSLRALFRNVARPAVDDA 371

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 10/204 (4%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
              ++L NN +      +  NL  L  L L NN  S   P   +    L +   S N+L+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 149 GEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL-SGRIPS-TRSH 205
            E+P ++   L   Q L + +N +     +    L+ +  + +  N L S  I +     
Sbjct: 114 -ELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           ++ L    +     + +  P     SL  + +  N+    +       L NL    +S N
Sbjct: 170 MKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
           +++     SL+NT +L +L +N N
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 86  LSFLRSINLVNNSLR-AEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
           L+ +  + L  N L+ + I +     + KL  + + +   +  IP  L    +L +    
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 144 NNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
            NK+  ++ A     L     L ++ N +      S+ N   L+E+++N N+L  ++P  
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 203 RSHVRNLISFNVGLNQFS----GMFPP---INNISSLEYIFIHKNR-YHGSLPLDIGVNL 254
            +  + +    +  N  S      F P       +S   + +  N   +  +       +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 255 PNLRFFIISGN 265
                  +   
Sbjct: 319 YVRAAVQLGNY 329

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 19/207 (9%)

Query: 6   SNICLATLVICCFSLLLTQSLFAQANEADRLSLLAMNSWNNSINLCQWTGVTCGHRHQRV 65
           S   L  L       LLT  L  +A +        +  ++    +             R 
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD----------PMRA 419

Query: 66  IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG 125
             LD          S      + +R ++L +  L   + H +  L  + +L L++N    
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR- 476

Query: 126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA--SIGNLS 183
            +P  L+    L   +AS+N LE  +   ++NL + Q L +  N L+ Q  A   + +  
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP 533

Query: 184 TLQEINVNGNRLSGRIPSTRSHVRNLI 210
            L  +N+ GN L  +    +  +  ++
Sbjct: 534 RLVLLNLQGNSLC-QEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 25/212 (11%), Positives = 63/212 (29%), Gaps = 10/212 (4%)

Query: 79  LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLV 138
                     L    L        +  E+ +  +LQ L   N +    I   +     L+
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 139 KFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR 198
             + +          +             ++    +        + ++ +++    L+  
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDD---LRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455

Query: 199 IPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLR 258
           +      +  +   ++  N+   + P +  +  LE +    N       +    NLP L+
Sbjct: 456 LCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA---NLPRLQ 511

Query: 259 FFIISGNNLTG-SLQDSLSNTTNLHKLDINRN 289
             ++  N L   +    L +   L  L++  N
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 14/220 (6%)

Query: 73  QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS 132
           ++  G   P   +L  L + +L +   +             +   L  +        + +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSA 346

Query: 133 RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQL---PASIGNLSTLQEIN 189
               L + E S  K    + +E+ +  + Q L          +     ++  L   +E  
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLD 249
              + L    P   +++ +L S  +  N    M      +  L +  +          L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------LC 457

Query: 250 IGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
               L  +    +S N L  +L  +L+    L  L  + N
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 85  YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           Y      +++   +       E   L   + +T  N+         L     +     ++
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 145 NKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
            ++E EI     +     Q L +  N ++   P    N+  L  + +  N LS       
Sbjct: 85  LQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143

Query: 204 SHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
            +   L + ++  N    +        +SL+ + +  NR    + L     +P+L    +
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANV 199

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S N L+     +L+    + +LD + N
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHN 221

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 15/225 (6%)

Query: 67  GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK 126
            + +  Q+   +       L+  + +   N+++R      + +  +++ L L +      
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 127 IPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI-GNLST 184
                +    + K     N +   +P  +  N+    +L + +N L   LP  I  N   
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG 244
           L  ++++ N L      T     +L +  +  N+ + +   ++ I SL +  +  N    
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL--- 203

Query: 245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              L        +     S N++   ++  +     L  L +  N
Sbjct: 204 ---LSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 47/223 (21%), Positives = 77/223 (34%), Gaps = 15/223 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L    I    +    Y   ++ + +  N++R   PH   N+  L  L L  N  S   
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
                    L     SNN LE  I  +        Q L ++ N L   +   +  + +L 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLF 195

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246
             NV+ N LS     T +    +   +   N  + +  P+N    L  + +  N      
Sbjct: 196 HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT--- 245

Query: 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
                +N P L    +S N L   +         L +L I+ N
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 30/207 (14%), Positives = 71/207 (34%), Gaps = 16/207 (7%)

Query: 84  GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
             +  L   N+  N L       +     ++ L  ++N  +  +   +     L   +  
Sbjct: 189 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           +N L  +    + N      ++++ N L+  +      +  L+ + ++ NRL   +    
Sbjct: 241 HNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 204 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263
             +  L   ++  N    +         LE +++  N    +L L        L+   +S
Sbjct: 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLS 353

Query: 264 GNNLTG-SLQDSLSNTTNLHKLDINRN 289
            N+    SL+    N       D +++
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLL 159
             I   +       ++ +                +N       N+ +  ++PA +  +  
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 75

Query: 160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF 219
           + ++LN+    ++     +     T+Q++ +  N +    P    +V  L    +  N  
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 220 SGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT 279
           S                        SLP  I  N P L    +S NNL     D+   TT
Sbjct: 136 S------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 280 NLHKLDINRN 289
           +L  L ++ N
Sbjct: 172 SLQNLQLSSN 181

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 38/204 (18%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L+    I    +++   +     +L  +  L+      +  I   +   +NL+  E  +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN 73

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           ++    P  + NL K   L ++ N LK    ++I  L +++ +++   +++    +  + 
Sbjct: 74  QITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           + NL    + LNQ + +  P+  +++L+Y+ I   +     PL    NL  L       N
Sbjct: 128 LSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTLKADDN 183

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
            ++      L++  NL ++ +  N
Sbjct: 184 KISDI--SPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 37/220 (16%), Positives = 88/220 (40%), Gaps = 16/220 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L      +       V YL+ L  + L +N +  ++   + NL K+  L L+ N    K 
Sbjct: 46  LSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL--KN 99

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
            + ++   ++   + ++ ++    P  ++ L   Q+L +  N +    P  +  L+ LQ 
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           +++   ++S    +  +++  L +     N+ S    P+ ++ +L  + +  N+     P
Sbjct: 156 LSIGNAQVSD--LTPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP 212

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN 287
           L    N  NL    ++   +T       +N    + +   
Sbjct: 213 LA---NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 155 ISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV 214
              L     +   K+++      +  +L  +  ++  G  ++  I     ++ NLI   +
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV-QYLNNLIGLEL 70

Query: 215 GLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274
             NQ + +  P+ N++ +  + +  N       +     L +++   ++   +T      
Sbjct: 71  KDNQITDL-APLKNLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITD--VTP 124

Query: 275 LSNTTNLHKLDINRN 289
           L+  +NL  L ++ N
Sbjct: 125 LAGLSNLQVLYLDLN 139

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 17/230 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGK 126
           L+L   +I+   +    +L  L  + L  NS+R +I       L  L  L L +N+ +  
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-V 137

Query: 127 IPTN-LSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAK-NHLKGQLPASIGNLS 183
           IP+      S L +    NN +E  IP+   + +     L++ +   L+     +   L 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 184 TLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHK 239
            L+ +N+    +   +P   + +  L    +  N F     G F   + +SSL+ +++  
Sbjct: 197 NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSF---HGLSSLKKLWVMN 251

Query: 240 NRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++    +  +    L +L    ++ NNL+    D  +    L +L ++ N
Sbjct: 252 SQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 18/208 (8%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFK-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 147
              +      L   +P     +    + L L  N              +L   +   N +
Sbjct: 56  FSKVVCTRRGLSE-VPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 148 EGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV 206
             +I     + L     L +  N L      +   LS L+E+ +  N +        + V
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 207 RNLISFNVG-LNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261
            +L+  ++G L +      G F     + +L+Y+ +          +     L  L    
Sbjct: 171 PSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELE 224

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +SGN+       S    ++L KL +  +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           +  L  ++L        I       LF L+ L L        +P  L+    L + E S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227

Query: 145 NKLEGEIPAE-ISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           N    EI       L   + L +  + +      +   L++L E+N+  N LS       
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 204 SHVRNLISFNVGLNQF 219
           + +R L+  ++  N +
Sbjct: 287 TPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           L+L    I+        +L  L  + L  N +R         L  L  L L +N  +  I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 128 PTN-LSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAK-NHLKGQLPASIGNLST 184
           P       S L +    NN +E  IP+   + +   + L++ +   L      +   LS 
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 185 LQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHKN 240
           L+ +N+    L   IP+  + +  L   ++  N  S    G F     +  L+ +++ ++
Sbjct: 187 LRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQ---GLMHLQKLWMIQS 241

Query: 241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +    +  +   NL +L    ++ NNLT    D  +   +L ++ ++ N
Sbjct: 242 QIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 18/208 (8%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFK-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 147
              +  V  +LR  +P     +    + L L  N        +     +L   + S N +
Sbjct: 45  FSKVICVRKNLRE-VPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 148 EGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV 206
              I     + L     L +  N L      +   LS L+E+ +  N +        + +
Sbjct: 101 R-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 207 RNLISFNVG-LNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261
            +L   ++G L + S    G F     +S+L Y+ +          +     L  L    
Sbjct: 160 PSLRRLDLGELKRLSYISEGAF---EGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELD 213

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +SGN+L+     S     +L KL + ++
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
            + I L  N +             L  L L +N  +       +  + L + + S+N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 149 GEIPAEI-SNLLKFQILNIAKNHLKGQLPASI-GNLSTLQEINVNGNRLSGRIPSTR-SH 205
             +       L +   L++ +  L+ +L   +   L+ LQ + +  N L   +P      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 206 VRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261
           + NL    +  N+ S      F     + SL+ + +H+NR    +      +L  L    
Sbjct: 152 LGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +  NNL+    ++L+    L  L +N N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 9/203 (4%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
              ++L NN +      +   L  L  L L NN  S       S    L K   S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 149 GEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL-SGRIPSTRSHV 206
            EIP  + S+L     L I  N ++         L  +  I + GN L +          
Sbjct: 116 -EIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 207 RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN 266
             L    +   + +G+  P +   +L  + +  N+   ++ L+  +    L    +  N 
Sbjct: 172 LKLNYLRISEAKLTGI--PKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 267 LTGSLQDSLSNTTNLHKLDINRN 289
           +      SLS    L +L ++ N
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNN 251

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 86  LSFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           L  +  I +  N L  +       +  KL  L ++    +  IP +L     L +    +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDH 202

Query: 145 NKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           NK++  I  E      K   L +  N ++     S+  L TL+E++++ N+LS R+P+  
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 204 SHVRNLISFNVGLNQFS----GMFPPIN---NISSLEYIFIHKNR-YHGSLPLDIGVNLP 255
             ++ L    +  N  +      F P+      +    I +  N   +  +       + 
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 256 NLRFFIISGN 265
           +         
Sbjct: 321 DRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 9e-09
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 14/266 (5%)

Query: 35  RLSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINL 94
            +       ++  +++   T       + + +  D +       L+        L ++ L
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ-TNPKLSNLTL 227

Query: 95  VNNSLRAEIPHEVGNL--------FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 146
            N          +  L        F + N+ L           + +    L   +  ++ 
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHV 206
                           I N   +  +         +S    ++ + N L+  +     H+
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 207 RNLISFNVGLNQFSGMFPPIN---NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263
             L +  + +NQ   +         + SL+ + I +N               +L    +S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 264 GNNLTGSLQDSLSNTTNLHKLDINRN 289
            N LT ++   L     +  LD++ N
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 8/208 (3%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L  L    +V++       +       +     T +          S+ S  +  + SNN
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG---NLSTLQEINVNGNRLSGRIPST 202
            L   +     +L + + L +  N LK +L         + +LQ+++++ N +S      
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 203 R-SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI 261
             S  ++L+S N+  N  +           ++ + +H N+   S+P  + V L  L+   
Sbjct: 394 DCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK-SIPKQV-VKLEALQELN 450

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++ N L           T+L K+ ++ N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 36/247 (14%), Positives = 68/247 (27%), Gaps = 44/247 (17%)

Query: 84  GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSR---CSNLVKF 140
           G  S    +  V+         ++     L+ LT+       +I     R    S L + 
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 141 EASNNKLEGEIPAEISNL------------------------------LKFQILNIAKNH 170
              N ++ G  P  +                                    ++L+IA+ H
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 171 LKGQLPASIGNLSTLQEINVNGNRLSGRI-------PSTRSHVRNLISFNVGLNQFSGMF 223
                   +     L  ++++ N   G         P     ++ L   N G+   SG+ 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 224 PP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH 282
                    L+ + +  N    +           L    +S   L   +   L     L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277

Query: 283 KLDINRN 289
            LD++ N
Sbjct: 278 VLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 61  RHQRVIGLDLRHQSIRGFLSPFVGYLSF----LRSINLVNNSLRAEIPHEVGNLFKLQNL 116
               +  L+LR+ S     +       +    L+ +++           +V     L  L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 117 TLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP 176
            L++N   G+     + C                 P +   L    + N       G   
Sbjct: 179 DLSDNPELGERGLISALC-----------------PLKFPTLQVLALRNAGMETPSGVCS 221

Query: 177 ASIGNLSTLQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLNQFSGMFPPINNISSLEYI 235
           A       LQ ++++ N L     +        L S N+       +   +   + L  +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVL 279

Query: 236 FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS 270
            +  NR     P      LP +    + GN    S
Sbjct: 280 DLSYNRLD-RNPSPDE--LPQVGNLSLKGNPFLDS 311

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE 148
             S       ++A        L  L +L   N+  +    T + + + L K   ++N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

Query: 149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN 208
                ++S       L    N L       +  L+ L  +N + N+L+       S    
Sbjct: 78  T---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 209 LISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT 268
           L   N   N  + +   +++ + L  +  H N+    L +        L     S N +T
Sbjct: 129 LTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKIT 183

Query: 269 GSLQDSLSNTTNLHKLDINRN 289
              +  +S    L++L+ + N
Sbjct: 184 ---ELDVSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 25/222 (11%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           LD  + SI       +  L+ L  +   +N++      ++     L  L   +N  +   
Sbjct: 47  LDCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN-- 99

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
             +++  + L       NKL      ++S       LN A+N L       + + + L E
Sbjct: 100 -LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTE 152

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           ++ + N+   ++    +    L + +   N+ + +   ++    L  +    N     L 
Sbjct: 153 LDCHLNKKITKLDV--TPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNIT-KLD 207

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L+       L F   S N LT      ++  T L   D + N
Sbjct: 208 LN---QNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVN 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 22/207 (10%)

Query: 83  VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142
           V + + L  ++   N    ++   V    +L  L  + N  +     ++S+   L +   
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
             N +  ++   ++  ++   L+ + N L       +  L+ L   + + N L+    ST
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVST 252

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
            S    L + +        +   + + + L Y      R    L +    +   L     
Sbjct: 253 LS---KLTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDC 304

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
               +T   +  LS    L  L +N  
Sbjct: 305 QAAGIT---ELDLSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 23/210 (10%)

Query: 80  SPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVK 139
              V   + L +++   N +      +V     L  L    N  +     +L++   L  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTF 216

Query: 140 FEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRI 199
            + S+NKL  EI   ++ L +    + + N L       +  LS L  ++     L   I
Sbjct: 217 LDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EI 269

Query: 200 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRF 259
               +H   LI F     +       + + + L  +          L L      P L +
Sbjct: 270 DL--THNTQLIYFQAEGCRKI-KELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVY 322

Query: 260 FIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
             ++   LT  L   +S+ T L  L     
Sbjct: 323 LYLNNTELT-EL--DVSHNTKLKSLSCVNA 349

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 19/196 (9%)

Query: 97  NSLRAEIPHEVGNLFK---LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPA 153
           N+L+A       + F      +              +  + + L   +  N+ +  ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT- 58

Query: 154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN 213
            I  L     L    N++       +   + L  +  + N+L+  +    + +  L   N
Sbjct: 59  GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLDV--TPLTKLTYLN 112

Query: 214 VGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 273
              N+ + +   ++    L Y+   +N       +D+  +   L       N     L  
Sbjct: 113 CDTNKLTKL--DVSQNPLLTYLNCARNTLT---EIDVS-HNTQLTELDCHLNKKITKL-- 164

Query: 274 SLSNTTNLHKLDINRN 289
            ++  T L  LD + N
Sbjct: 165 DVTPQTQLTTLDCSFN 180

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 83  VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 142
           V  L+ L   +   N L  E+   V  L KL  L             +L+  + L+ F+A
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQA 282

Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
              +   E+  ++++  +  +L+     +       +     L  + +N   L+  +   
Sbjct: 283 EGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDV- 335

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNL----PNLR 258
            SH   L S +         F  +  I +L   F  + +        +  N      +  
Sbjct: 336 -SHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

Query: 259 FFIISGNNLTGSLQD 273
                GN +     D
Sbjct: 394 LLDQFGNPMNIEPGD 408

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 39/267 (14%), Positives = 86/267 (32%), Gaps = 15/267 (5%)

Query: 36  LSLLAMNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLV 95
            ++L +    NS+   Q         H ++  + L  ++ +  ++           +N+ 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 96  NNSLRAEIPHEVGNL----------FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
              +       V               + NLT+T      +   + +   +L+     N 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
                  A  S   +  I  ++ +           + S+   +N   N  +  +    S 
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 206 VRNLISFNVGLNQF---SGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
           ++ L +  +  N       +     N+SSLE + +  N  +            ++    +
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S N LTGS+   L     +  LD++ N
Sbjct: 436 SSNMLTGSVFRCL--PPKVKVLDLHNN 460

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 10/233 (4%)

Query: 62  HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN 121
           +  +  L +  +  R   +     L  L   ++ N               ++    L+ +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGN 181
                        S+      + N     +    S L + Q L + +N LK         
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALM 398

Query: 182 LSTLQEINVNGNRL----SGRIPSTRSHVRNLISFNVGLNQF-SGMFPPINNISSLEYIF 236
              +  +      L    S     T +   +++  N+  N     +F  +     ++ + 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456

Query: 237 IHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +H NR   S+P D+  +L  L+   ++ N L           T+L  + ++ N
Sbjct: 457 LHNNRIM-SIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFK-LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
           ++    +N    +L A +P    +L K    L L+ N         L   + L +     
Sbjct: 9   VASHLEVNCDKRNLTA-LPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS 204
            +L  ++  +   L     L+++ N L+  LP     L  L  ++V+ NRL+        
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 205 HVRNLISFNVGLNQFS----GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF 260
            +  L    +  N+      G+         LE + +  N     LP  +   L NL   
Sbjct: 122 GLGELQELYLKGNELKTLPPGLL---TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

Query: 261 IISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           ++  N+L  ++      +  L    ++ N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 15/216 (6%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEAS 143
           L  L  ++L  N L   +       L  L  L L  N +     T+L S  + L      
Sbjct: 99  LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 144 NNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
           N     +I  +  + L   + L I  + L+   P S+ ++  +  + ++  +    +   
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 203 RSHVRNLISFNVGLNQF---------SGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVN 253
                ++    +              +G    +    +   + I        + L     
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQ 275

Query: 254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +  L     S N L           T+L K+ ++ N
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 8/182 (4%)

Query: 113 LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHL 171
           +++L L+NN  +    ++L RC NL     ++N +   I  +  S+L   + L+++ N+L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 172 KGQLPASI-GNLSTLQEINVNGNRLSGRIP-STRSHVRNLISFNVGLNQFSGMFPP--IN 227
              L +S    LS+L  +N+ GN        S  SH+  L    VG              
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDIN 287
            ++ LE + I  +    S       ++ N+   I+        L+  +  T+++  L++ 
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 288 RN 289
             
Sbjct: 231 DT 232

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 13/194 (6%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEAS 143
           LS L  +NL+ N  +      +  +L KLQ L + N     KI     +  + L + E  
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 144 NNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG----R 198
            + L+     +   ++     L +        L   +   S+++ + +    L       
Sbjct: 183 ASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 199 IPS----TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNL 254
           + +    +        +  +       +   +N IS L  +   +N+   S+P  I   L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300

Query: 255 PNLRFFIISGNNLT 268
            +L+   +  N   
Sbjct: 301 TSLQKIWLHTNPWD 314

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGK 126
           +DL   SI          L  L+ + +   +    I +     L  L  L L  N F  +
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 127 IPTN-LSRCSNLVKFEASNNKL-EGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI-GNL 182
           + T   +  +NL     +   L    +       L   ++L +  N++K   PAS   N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 183 STLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRY 242
                +++  N++          +      N     F+ +      +  +         +
Sbjct: 154 RRFHVLDLTFNKV--------KSICEEDLLNFQGKHFTLLRLSSITLQDMN------EYW 199

Query: 243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL 284
            G           ++    +SGN    S+     +     K+
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 16/192 (8%)

Query: 113 LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHL 171
           +  + L+ N  +    T+ SR  +L   +         I       L    IL +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 172 KGQLPASI-GNLSTLQEINVNGNRL-SGRIPSTR-SHVRNLISFNVGLNQFSGMFPPI-- 226
             QL       L+ L+ + +    L    +       + +L    +  N    + P    
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 227 NNISSLEYIFIHKNR---------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN 277
            N+     + +  N+          +        + L ++    ++   L      +   
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 278 TTNLHKLDINRN 289
            T++  LD++ N
Sbjct: 211 NTSITTLDLSGN 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 29/214 (13%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV---GNLFKLQNLTLTNNY--FSGKIPTNLSRCSNLVKF 140
            + + +++L  N  +  +           K+Q+L L+N+Y   S    TN     N    
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-GNLSTLQEINVNGNRLSGRI 199
               + ++                +++K+ +   L  S+  + + L+++ +  N ++   
Sbjct: 271 GLEASGVK--------------TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKID 315

Query: 200 PSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLP 255
            +    + +L+  N+  N      S MF    N+  LE + +  N    +L     + LP
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMF---ENLDKLEVLDLSYNHIR-ALGDQSFLGLP 371

Query: 256 NLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           NL+   +  N L           T+L K+ ++ N
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 16/222 (7%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
            +L+ +S+          L+ +  I   N+ ++  +   +  L  +  L L  N  +  I
Sbjct: 29  DNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DI 83

Query: 128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE 187
              L+   NL       NK++ ++ + + +L K + L++  N +       + +L  L+ 
Sbjct: 84  -KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLES 138

Query: 188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP 247
           + +  N+++    +  S +  L + ++  NQ S +  P+  ++ L+ +++ KN       
Sbjct: 139 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 195

Query: 248 LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           L     L NL    +          +  SN    + +     
Sbjct: 196 LA---GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 20/135 (14%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 155 ISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV 214
                +    N+ K  +   +      L+++ +I  N + +   +     ++ N+    +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFL 75

Query: 215 GLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS 274
             N+ + +  P+ N+ +L ++F+ +N+      L    +L  L+   +  N ++  + + 
Sbjct: 76  NGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLK---DLKKLKSLSLEHNGIS-DI-NG 129

Query: 275 LSNTTNLHKLDINRN 289
           L +   L  L +  N
Sbjct: 130 LVHLPQLESLYLGNN 144

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 19/201 (9%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L+     NL   S+   +      L  +QN    N+     +   +   +NL +   S+N
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHN 73

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS--TLQEINVNGNRLSGRIPSTR 203
           ++  ++   + +L K + L++ +N LK     ++  +    L  + ++ N L      + 
Sbjct: 74  QIS-DLSP-LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRD--TDSL 124

Query: 204 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS 263
            H++NL   ++  N+       +  +S LE + +H N    +  L     L  + +  ++
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLT 180

Query: 264 GNNLTGSLQDSLSNTTNLHKL 284
           G                 + +
Sbjct: 181 GQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK 168
            L       L     S     +    S +  F   N+ ++  +   +      + L+++ 
Sbjct: 17  GLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN 228
           N +     + + +L+ L+E++VN NRL   +    S    L    +  N+       + +
Sbjct: 73  NQISD--LSPLKDLTKLEELSVNRNRLK-NLNGIPSA--CLSRLFLDNNELRDT-DSLIH 126

Query: 229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR 288
           + +LE + I  N+    + L     L  L    + GN +T +    L+    ++ +D+  
Sbjct: 127 LKNLEILSIRNNKLKSIVMLG---FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181

Query: 289 N 289
            
Sbjct: 182 Q 182

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 30/205 (14%), Positives = 52/205 (25%), Gaps = 4/205 (1%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASNNKL 147
              +  V   LR            L+ + ++ N     I  +  S    L +        
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 148 EGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST--RS 204
              I  E   NL   Q L I+   +K        +      +++  N     I       
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG 264
                +   +  N    +     N + L+ + +  N     LP D+           IS 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 265 NNLTGSLQDSLSNTTNLHKLDINRN 289
             +       L N   L        
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 25/147 (17%)

Query: 143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPST 202
             +K+  EIP+++        L      L+     +      L++I ++ N +   I + 
Sbjct: 17  QESKVT-EIPSDLPRNA--IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA- 72

Query: 203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFII 262
                              +F   +N+  L  I I K      +  +   NLPNL++ +I
Sbjct: 73  ------------------DVF---SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 263 SGNNLTGSLQDSLSNTTNLHKLDINRN 289
           S   +         ++     LDI  N
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDN 138

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 39/208 (18%), Positives = 74/208 (35%), Gaps = 34/208 (16%)

Query: 89  LRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNK 146
            ++++L  N LR  +      +  +LQ L L+       I        S+L     + N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 147 LEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           ++  +     S L   Q L   + +L       IG+L TL+E+NV  N +          
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--------- 137

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI---- 261
             +          FS +       ++LE++ +  N+   S+       L  +        
Sbjct: 138 --SFKLPEY----FSNL-------TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD 183

Query: 262 ISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           +S N +   +Q        L +L ++ N
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 86  LSFLRSINLVNNSLRAEIPHEV-GNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEAS 143
              L+ ++L    ++  I      +L  L  L LT N     +     S  S+L K  A 
Sbjct: 51  FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 144 NNKLEGEIPAEI-SNLLKFQILNIAKNHL-KGQLPASIGNLSTLQEINVNGNRLSGRIPS 201
              L   +      +L   + LN+A N +   +LP    NL+ L+ ++++ N++     +
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 202 TRSHVRNLISFNVGL----NQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNL 257
               +  +   N+ L    N  + + P       L+ + +  N+   S+P  I   L +L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSL 226

Query: 258 RFFIISGN 265
           +   +  N
Sbjct: 227 QKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 12/183 (6%)

Query: 113 LQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHL 171
            + L L +N  S        R + L     ++NKL+  +PA I   L   + L +  N L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 172 KGQLPASI-GNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQF----SGMFPPI 226
           +  LP  +   L  L E+ ++ N+L    P     +  L   ++G N+      G+F   
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--- 153

Query: 227 NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI 286
           + ++SL+ + ++ N+    +P      L  L+   +  N L    + +  +   L  L +
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 287 NRN 289
             N
Sbjct: 213 QEN 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 24/114 (21%)

Query: 176 PASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYI 235
              +     L E+ +   +    +                     G+         L  +
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLEL---------------RDLRGL-------GELRNL 61

Query: 236 FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
            I K+     +  D     P L    +S N L  SL        +L +L ++ N
Sbjct: 62  TIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 96  NNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN-LSRCSNLVKFEASNNKLEGEIPAE 154
                 +  H +     L  L + N      +    L     L       + L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 155 I-SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRL 195
                 +   LN++ N L+     ++  LS LQE+ ++GN L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 86  LSFLRSINLVNNSL-RAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 144
            S ++ + L N+     ++        +L+ L+  N   +  I  NL + + L K E S+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 145 NKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTR 203
           N++ G +            LN++ N +K       +  L  L+ +++    ++  +   R
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYR 132

Query: 204 SHVRNLI 210
            +V  L+
Sbjct: 133 ENVFKLL 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 29/181 (16%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 89  LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS-GKIPTNLSRCSNLVKFEASNNKL 147
           +     + +++R     +     + + + L        K+   LS          S N +
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVR 207
           E +I + +S +   +IL++ +N +K ++        TL+E+ ++ N+++  + S    + 
Sbjct: 61  E-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLV 115

Query: 208 NLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL 267
           NL    +  N+       I N   ++ +                  L  L   +++GN L
Sbjct: 116 NLRVLYMSNNK-------ITNWGEIDKL----------------AALDKLEDLLLAGNPL 152

Query: 268 T 268
            
Sbjct: 153 Y 153

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 29/159 (18%)

Query: 133 RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG 192
            C     F  +   ++  IP+   +    Q L + + HL+     +  NL  +  I V+ 
Sbjct: 9   ECHQEEDFRVTCKDIQ-RIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV 252
           +    ++ S               + F  +       S + +I I   R    +  D   
Sbjct: 65  DVTLQQLES---------------HSFYNL-------SKVTHIEIRNTRNLTYIDPDALK 102

Query: 253 NLPNLRFFIISGNNLTGSLQD--SLSNTTNLHKLDINRN 289
            LP L+F  I    L     D   + +T     L+I  N
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN 140

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 85  YLSFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 143
             + +R + L N      +I         L+ L+L N      + +NL +   L K E S
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLK--GQLPASIGNLSTLQEINVNGNRLSGRIPS 201
            N++ G +      L     LN++ N LK    L   +  L  L+ +++    ++  +  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT-NLND 137

Query: 202 TRSHVRNLI 210
            R  V  L+
Sbjct: 138 YRESVFKLL 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.19

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.2e-41  Score=285.52  Aligned_cols=246  Identities=28%  Similarity=0.445  Sum_probs=225.1

Q ss_pred             cCCCCCCCCCCC--cccceeCCCC--CeeEEEeccCCCCCC--cCCccccCCCCCcEEEccC-CCCcccCCccccccccc
Q 045366           41 MNSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIRG--FLSPFVGYLSFLRSINLVN-NSLRAEIPHEVGNLFKL  113 (289)
Q Consensus        41 ~~~w~~~~~~c~--~~~~~c~~~~--~~v~~l~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L  113 (289)
                      +.+|..+.++|.  |.|+.|+...  .+|+.++++++.+.+  .+|+.+..+++|++|++++ |.+.+.+|..|.++++|
T Consensus        24 l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L  103 (313)
T 1ogq_A           24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL  103 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTC
T ss_pred             ccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCC
Confidence            568998889998  9999998654  689999999999998  8999999999999999995 99998999999999999


Q ss_pred             ccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCC-CCCEEEccC
Q 045366          114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS-TLQEINVNG  192 (289)
Q Consensus       114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~  192 (289)
                      ++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            9999999999989999999999999999999999989999999999999999999999989999999998 999999999


Q ss_pred             ccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366          193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL  271 (289)
Q Consensus       193 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  271 (289)
                      |.+++.+|..+..++ |++|++++|.+++..+. +..+++|++|++++|.+++.++. + ..+++|++|++++|++++.+
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECC
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcC
Confidence            999988999998887 99999999999887766 88889999999999999855554 3 37889999999999999889


Q ss_pred             CccccCCCCCCeEeCcCC
Q 045366          272 QDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       272 ~~~~~~~~~L~~L~l~~N  289 (289)
                      |..+..+++|++|++++|
T Consensus       261 p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          261 PQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CGGGGGCTTCCEEECCSS
T ss_pred             ChHHhcCcCCCEEECcCC
Confidence            999999999999999887

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-35  Score=279.87  Aligned_cols=257  Identities=24%  Similarity=0.415  Sum_probs=190.6

Q ss_pred             hcChHhHHHHHh----------cCCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCc---CC---------------
Q 045366           29 QANEADRLSLLA----------MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGF---LS---------------   80 (289)
Q Consensus        29 ~~~~~~~~~l~~----------~~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~---~~---------------   80 (289)
                      +..++|+.|+++          +++|+.+.++|.|.||.|+  .++|+.++++++.+.+.   ++               
T Consensus         8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~   85 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS   85 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred             cCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCc
Confidence            345678888875          5689988899999999998  38999999999888765   32               


Q ss_pred             --------ccccCCCCCcEEEccCCCCcccCCc--ccccccccccccccccccCCCCCccc-cCCCCCcEEEccCCcCCC
Q 045366           81 --------PFVGYLSFLRSINLVNNSLRAEIPH--EVGNLFKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLEG  149 (289)
Q Consensus        81 --------~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~  149 (289)
                              +.++.+++|++|+|++|.+.+.+|.  .+.++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++
T Consensus        86 ~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  165 (768)
T 3rgz_A           86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG  165 (768)
T ss_dssp             TSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred             CCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence                    5778889999999999999988888  89999999999999999987777665 677888888888887765


Q ss_pred             Ccchh---cc----------------------CCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc
Q 045366          150 EIPAE---IS----------------------NLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS  204 (289)
Q Consensus       150 ~~~~~---~~----------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  204 (289)
                      ..+..   +.                      .+++|++|++++|.+.+..|. ++.+++|++|++++|.+++.+|..++
T Consensus       166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred             cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence            55544   33                      344555555555555544444 66777777777777777766666777


Q ss_pred             CCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeE
Q 045366          205 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKL  284 (289)
Q Consensus       205 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  284 (289)
                      .+++|++|++++|.+.+..+.. .+++|++|++++|++++.+|..++..+++|++|++++|++++.+|..++++++|++|
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  323 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL  323 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence            7777777777777776655544 566677777777777666676665334777777777777777777777777777777


Q ss_pred             eCcCC
Q 045366          285 DINRN  289 (289)
Q Consensus       285 ~l~~N  289 (289)
                      ++++|
T Consensus       324 ~L~~n  328 (768)
T 3rgz_A          324 ALSSN  328 (768)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            77665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.8e-35  Score=253.63  Aligned_cols=239  Identities=20%  Similarity=0.295  Sum_probs=217.8

Q ss_pred             CCCCCCCCcccceeCC--------CCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccc
Q 045366           45 NNSINLCQWTGVTCGH--------RHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNL  116 (289)
Q Consensus        45 ~~~~~~c~~~~~~c~~--------~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  116 (289)
                      ....++|.|.|+.|..        ...+++.|+++++.+. .+|+.+.++++|++|++++|.+. .+|..+.++++|++|
T Consensus        55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L  132 (328)
T 4fcg_A           55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL  132 (328)
T ss_dssp             TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred             cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence            4566889999999942        2368999999999998 57888888999999999999999 789999999999999


Q ss_pred             cccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccC---------CCCCceeeeecccccccCChhccCCCCCCE
Q 045366          117 TLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISN---------LLKFQILNIAKNHLKGQLPASIGNLSTLQE  187 (289)
Q Consensus       117 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  187 (289)
                      ++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..         +++|++|++++|.+. .+|..+..+++|++
T Consensus       133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~  210 (328)
T 4fcg_A          133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS  210 (328)
T ss_dssp             EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred             ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence            99999999 88999999999999999999888888877654         999999999999999 78889999999999


Q ss_pred             EEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366          188 INVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN  266 (289)
Q Consensus       188 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  266 (289)
                      |++++|.++ .+|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+. .+++|++|++++|.
T Consensus       211 L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCV  288 (328)
T ss_dssp             EEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCT
T ss_pred             EEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCC
Confidence            999999999 4677899999999999999999888776 89999999999999999889998876 89999999999999


Q ss_pred             cccccCccccCCCCCCeEeCcCC
Q 045366          267 LTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       267 l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.+.+|+.++++++|+.+++..|
T Consensus       289 ~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          289 NLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TCCCCCGGGGGSCTTCEEECCGG
T ss_pred             chhhccHHHhhccCceEEeCCHH
Confidence            99999999999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-35  Score=274.63  Aligned_cols=241  Identities=22%  Similarity=0.351  Sum_probs=185.7

Q ss_pred             CCCCCCCCCCc---ccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC---------------------
Q 045366           43 SWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS---------------------   98 (289)
Q Consensus        43 ~w~~~~~~c~~---~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~---------------------   98 (289)
                      +|+.+.++|.|   .||.|+.. ++|+.|+|+++++.|.+|+.++++++|+.|+|++|.                     
T Consensus        59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~  137 (636)
T 4eco_A           59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ  137 (636)
T ss_dssp             CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred             CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence            69888899999   99999876 799999999999999999999999999999999884                     


Q ss_pred             ---------------------------------------------------------CcccCCccccccccccccccccc
Q 045366           99 ---------------------------------------------------------LRAEIPHEVGNLFKLQNLTLTNN  121 (289)
Q Consensus        99 ---------------------------------------------------------l~~~~~~~~~~l~~L~~L~L~~n  121 (289)
                                                                               +++ +|..+.++++|++|++++|
T Consensus       138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n  216 (636)
T 4eco_A          138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS  216 (636)
T ss_dssp             HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred             HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC
Confidence                                                                     334 7888999999999999999


Q ss_pred             ccCCC-----------------CCcccc--CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccc-ccc-cCChhcc
Q 045366          122 YFSGK-----------------IPTNLS--RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH-LKG-QLPASIG  180 (289)
Q Consensus       122 ~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~  180 (289)
                      .+++.                 +|..+.  .+++|++|++++|.+.+.+|..|+.+++|++|++++|+ +++ .+|..++
T Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~  296 (636)
T 4eco_A          217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ  296 (636)
T ss_dssp             CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred             ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence            99975                 899988  99999999999999998999999999999999999998 877 6777666


Q ss_pred             CC------CCCCEEEccCccCcccCCc--cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhc
Q 045366          181 NL------STLQEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV  252 (289)
Q Consensus       181 ~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  252 (289)
                      .+      ++|++|++++|.++ .+|.  .++.+++|++|++++|.+.|..+.+..+++|++|++++|.++ .+|..+. 
T Consensus       297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~-  373 (636)
T 4eco_A          297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFC-  373 (636)
T ss_dssp             HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSE-
T ss_pred             hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhh-
Confidence            65      77788888877777 6676  777777777777777777754445555556666666666655 5554443 


Q ss_pred             CCCC-CcEEEccccccccccCccccCCC--CCCeEeCcCC
Q 045366          253 NLPN-LRFFIISGNNLTGSLQDSLSNTT--NLHKLDINRN  289 (289)
Q Consensus       253 ~~~~-L~~L~Ls~n~l~~~~~~~~~~~~--~L~~L~l~~N  289 (289)
                      .+++ |++|++++|.++ .+|..+..++  +|+.|++++|
T Consensus       374 ~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence            4444 555555555555 4444443332  4444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.4e-34  Score=245.15  Aligned_cols=224  Identities=22%  Similarity=0.349  Sum_probs=211.9

Q ss_pred             CeeEEEeccC-CCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRH-QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ++++.|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..|.++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            6789999995 999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCcchhccCCC-CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366          142 ASNNKLEGEIPAEISNLL-KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       142 l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  220 (289)
                      +++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            999999988999999998 999999999999999999999887 999999999999888999999999999999999999


Q ss_pred             ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          221 GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       221 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.++.+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|.. ..+++|+.+++++|
T Consensus       235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             eecCcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            8777788889999999999999988898876 8999999999999999999986 88999999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-33  Score=265.50  Aligned_cols=226  Identities=32%  Similarity=0.546  Sum_probs=180.4

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+.+..|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            46677777777777777777777777777777777777777777777788888888888877777777778888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc-------------------
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR-------------------  203 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------------------  203 (289)
                      ++|++.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+                   
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            8888877778888888888888888888887788888888888888888887766555432                   


Q ss_pred             ---------------------------------------------------cCCCCCcEEeccCCcCcccCCC-CCCCCC
Q 045366          204 ---------------------------------------------------SHVRNLISFNVGLNQFSGMFPP-INNISS  231 (289)
Q Consensus       204 ---------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~-~~~~~~  231 (289)
                                                                         ..+++|++||+++|.++|.+|. +..++.
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                               2346678888888888877776 888888


Q ss_pred             CCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          232 LEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       232 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      |++|++++|+++|.+|..+. .+++|++|||++|+++|.+|..++++++|++||+++|
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~-~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             CCEEeCcCCccCCCCChHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            88888888888888888777 7888888888888888888888888888888888887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5e-34  Score=270.86  Aligned_cols=253  Identities=22%  Similarity=0.283  Sum_probs=212.4

Q ss_pred             ChHhHHHHHh------cCCCCCCC-----CC--CCc------------ccceeCCCCCeeEEEeccCCCCCCcCCccccC
Q 045366           31 NEADRLSLLA------MNSWNNSI-----NL--CQW------------TGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGY   85 (289)
Q Consensus        31 ~~~~~~~l~~------~~~w~~~~-----~~--c~~------------~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~   85 (289)
                      ..+|+.|+.+      -.+|+.+.     ++  |.|            .||.|+.. .+|+.|+|+++++.|.+|+.+++
T Consensus       267 ~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~  345 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQ  345 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGG
T ss_pred             chHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhc
Confidence            3467778877      23797665     55  999            99999874 89999999999999999999999


Q ss_pred             CCCCcEEEc-cCCCCccc--------------------------------------------------------------
Q 045366           86 LSFLRSINL-VNNSLRAE--------------------------------------------------------------  102 (289)
Q Consensus        86 l~~L~~L~L-~~n~l~~~--------------------------------------------------------------  102 (289)
                      +++|+.|+| ++|.+.|.                                                              
T Consensus       346 L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l  425 (876)
T 4ecn_A          346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL  425 (876)
T ss_dssp             CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCC
T ss_pred             cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccch
Confidence            999999999 77654333                                                              


Q ss_pred             --------------CCcccccccccccccccccccCC-----------------CCCcccc--CCCCCcEEEccCCcCCC
Q 045366          103 --------------IPHEVGNLFKLQNLTLTNNYFSG-----------------KIPTNLS--RCSNLVKFEASNNKLEG  149 (289)
Q Consensus       103 --------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~  149 (289)
                                    +|..|.++++|++|++++|.+++                 .+|..++  .+++|++|++++|.+.+
T Consensus       426 ~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~  505 (876)
T 4ecn_A          426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT  505 (876)
T ss_dssp             CTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC
T ss_pred             hhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc
Confidence                          77889999999999999999997                 3898887  99999999999999999


Q ss_pred             CcchhccCCCCCceeeeeccc-ccc-cCChhccCCC-------CCCEEEccCccCcccCCc--cccCCCCCcEEeccCCc
Q 045366          150 EIPAEISNLLKFQILNIAKNH-LKG-QLPASIGNLS-------TLQEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQ  218 (289)
Q Consensus       150 ~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~  218 (289)
                      .+|..|+.+++|++|++++|+ +++ .+|..++.++       +|+.|++++|.++ .+|.  .++.+++|+.|++++|.
T Consensus       506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            999999999999999999998 887 6777665544       9999999999998 7887  88899999999999999


Q ss_pred             CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCC-CcEEEccccccccccCccccCCCC--CCeEeCcCC
Q 045366          219 FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPN-LRFFIISGNNLTGSLQDSLSNTTN--LHKLDINRN  289 (289)
Q Consensus       219 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~--L~~L~l~~N  289 (289)
                      +..++ .+..+++|++|++++|.++ .+|..+. .+++ |+.|++++|.++ .+|..+..++.  |+.|++++|
T Consensus       585 l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          585 VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             cccch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            88444 7888888999999999888 7887765 6777 888888888888 67776665543  777777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=3.2e-32  Score=231.23  Aligned_cols=239  Identities=20%  Similarity=0.273  Sum_probs=210.0

Q ss_pred             CCCCcccceeCCCC---------CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc--CCccccccccccccc
Q 045366           49 NLCQWTGVTCGHRH---------QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLT  117 (289)
Q Consensus        49 ~~c~~~~~~c~~~~---------~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~  117 (289)
                      ..|.|.++.|....         .+++.|++++|.++...+..+..+++|++|++++|.+...  .+..+.++++|++|+
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            34778888886532         5799999999999976666789999999999999999733  366777899999999


Q ss_pred             ccccccCCCCCccccCCCCCcEEEccCCcCCCCcc-hhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366          118 LTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       118 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      +++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            9999998 677789999999999999999985544 57899999999999999999888888999999999999999998


Q ss_pred             c-cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc
Q 045366          197 G-RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS  274 (289)
Q Consensus       197 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  274 (289)
                      + ..|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++ ++...+..+++|++|++++|++++..|..
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            6 5788999999999999999999998765 8899999999999999984 44444448999999999999999999999


Q ss_pred             ccCCC-CCCeEeCcCC
Q 045366          275 LSNTT-NLHKLDINRN  289 (289)
Q Consensus       275 ~~~~~-~L~~L~l~~N  289 (289)
                      +..++ +|++|++++|
T Consensus       243 ~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CCCCCTTCCEEECTTC
T ss_pred             HHhhhccCCEEEccCC
Confidence            99985 9999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=4e-31  Score=235.47  Aligned_cols=224  Identities=19%  Similarity=0.193  Sum_probs=200.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+.+|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57899999999999988899999999999999999999888889999999999999999999666668999999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      ++|.+....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            9999986667789999999999999954 44444457899999999999999998 455 47889999999999999999


Q ss_pred             cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ..+. +..+++|++|++++|++++..+ ..+..+++|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             cChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            8776 9999999999999999984444 44558999999999999999777788999999999999988

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.8e-31  Score=238.50  Aligned_cols=224  Identities=18%  Similarity=0.190  Sum_probs=200.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+++..+..|..+++|+.|++++|.+.+..+.+|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57999999999999988999999999999999999999888899999999999999999999666677899999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecc-cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKN-HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      ++|.+....+..|..+++|++|++++| .+....+..+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            999998666678999999999999985 4444444578999999999999999985 44 58889999999999999999


Q ss_pred             cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ..+. +..+++|++|++++|++++..+.. +..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            8776 899999999999999998544544 448999999999999999777788999999999999988

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=8.7e-31  Score=234.10  Aligned_cols=135  Identities=20%  Similarity=0.221  Sum_probs=99.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-CcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ++++.|++++|.+++..|..++.+++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56889999999988877888888888888888888886443 56688888888888888888766677777788888888


Q ss_pred             ccCCcCCCCcchh--ccCCCCCceeeeecccccccCChh-ccCCCCCCEEEccCccCcc
Q 045366          142 ASNNKLEGEIPAE--ISNLLKFQILNIAKNHLKGQLPAS-IGNLSTLQEINVNGNRLSG  197 (289)
Q Consensus       142 l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~  197 (289)
                      +++|.+.+..+..  |..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8887776544443  667777777777777776555544 5666666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=8.9e-32  Score=233.05  Aligned_cols=225  Identities=20%  Similarity=0.231  Sum_probs=192.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+++..+..+..+++|++|++++|++++..|.+|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            57999999999999877778999999999999999999888889999999999999999999544445889999999999


Q ss_pred             cCCcCCCCcc-hhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366          143 SNNKLEGEIP-AEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       143 ~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  220 (289)
                      ++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999984333 478999999999999994 66666778999999999999999999888999999999999999999987


Q ss_pred             ccCCC-CCCCCCCCEEEccCCccccc-------------------------------CchhhhcCCCCCcEEEccccccc
Q 045366          221 GMFPP-INNISSLEYIFIHKNRYHGS-------------------------------LPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       221 ~~~~~-~~~~~~L~~L~l~~n~l~~~-------------------------------~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ..+.. +..+++|++|++++|++++.                               +|..+. .+++|++|++++|+++
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLK  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh-cccCCCEEECCCCCCC
Confidence            55443 44567888999988888742                               233333 7899999999999999


Q ss_pred             cccCcc-ccCCCCCCeEeCcCC
Q 045366          269 GSLQDS-LSNTTNLHKLDINRN  289 (289)
Q Consensus       269 ~~~~~~-~~~~~~L~~L~l~~N  289 (289)
                       .+|.. +.++++|++|++++|
T Consensus       291 -~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          291 -SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSS
T ss_pred             -ccCHHHHhcCCCCCEEEeeCC
Confidence             55554 699999999999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=7.6e-30  Score=214.48  Aligned_cols=220  Identities=20%  Similarity=0.219  Sum_probs=146.0

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      +.++++++++... |..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4566666666543 3322  356777777777776655566677777777777777776555666777777777777777


Q ss_pred             c-CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC
Q 045366          146 K-LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP  224 (289)
Q Consensus       146 ~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  224 (289)
                      . +....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 554446666777777777777777766556666677777777777777765555556667777777777777776665


Q ss_pred             C-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          225 P-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       225 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      . +..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            4 66667777777777777644454443 6677777777777777555556677777777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-29  Score=217.95  Aligned_cols=232  Identities=18%  Similarity=0.294  Sum_probs=176.8

Q ss_pred             CCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc
Q 045366           50 LCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN  120 (289)
Q Consensus        50 ~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  120 (289)
                      .|.+..+.|...         .+.++.+++++|.+++..+..+..+++|++|++++|.+.+..|.+|.++++|++|++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            456777777532         25789999999999988887899999999999999999988899999999999999999


Q ss_pred             cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc
Q 045366          121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      |.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+..  ..+..+..+++|++|++++|.++ .
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~  185 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  185 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence            9998 6776554  689999999999887667778888899999998888853  55667778888888888887776 3


Q ss_pred             CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      +|..+.  ++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+|..+..
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhcc
Confidence            444433  5777777777777766544 66667777777777777643333333 6677777777777776 66666777


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|++++|
T Consensus       262 l~~L~~L~l~~N  273 (330)
T 1xku_A          262 HKYIQVVYLHNN  273 (330)
T ss_dssp             CSSCCEEECCSS
T ss_pred             CCCcCEEECCCC
Confidence            777777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.4e-30  Score=230.21  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcC
Q 045366          175 LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVN  253 (289)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~  253 (289)
                      .|..++.+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|++++..|..+. .
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~  369 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-G  369 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-T
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-c
Confidence            344445555555555555555555555555555666666666655555443 55555666666666665533343333 5


Q ss_pred             CCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          254 LPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       254 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +++|++|++++|++++..+..+..+++|++|++++|
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            566666666666666444445566666666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=4.9e-30  Score=230.67  Aligned_cols=226  Identities=20%  Similarity=0.229  Sum_probs=181.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            57889999999999888889999999999999999999888899999999999999999998555566888999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99999877788888899999999999988877777888888888888888888765555677777888888877777766


Q ss_pred             CCC-CCCCCCCC------------------------EEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          223 FPP-INNISSLE------------------------YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       223 ~~~-~~~~~~L~------------------------~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      .+. +..+++|+                        +|++++|+++ .+|...+..+++|+.|++++|.+++..+..|..
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            553 55555444                        5555555555 455544557778888888888877666677778


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|++++|
T Consensus       271 l~~L~~L~L~~n  282 (477)
T 2id5_A          271 LLRLQEIQLVGG  282 (477)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cccCCEEECCCC
Confidence            888888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.7e-29  Score=216.88  Aligned_cols=231  Identities=23%  Similarity=0.307  Sum_probs=165.7

Q ss_pred             CCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccc
Q 045366           50 LCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTN  120 (289)
Q Consensus        50 ~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  120 (289)
                      .|.+..+.|...         .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|.+|.++++|++|++++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            356777777532         15789999999999988888999999999999999999988899999999999999999


Q ss_pred             cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCccc
Q 045366          121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      |.+. .+|..+.  ++|++|++++|.+....+..|..+++|++|++++|.+..  ..+..+..+ +|+.|++++|.+++ 
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            9998 6776655  799999999999987667779999999999999999863  556666665 66666666666653 


Q ss_pred             CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      +|..+.  ++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+ ..+++|++|++++|+++ .+|..+..
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChhhhc
Confidence            343332  4566666666666555433 5555566666666666553222222 25556666666666555 55555555


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|++++|
T Consensus       263 l~~L~~L~l~~N  274 (332)
T 2ft3_A          263 LKLLQVVYLHTN  274 (332)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CccCCEEECCCC
Confidence            666666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=5.2e-29  Score=207.81  Aligned_cols=217  Identities=18%  Similarity=0.233  Sum_probs=190.0

Q ss_pred             CCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC
Q 045366           48 INLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI  127 (289)
Q Consensus        48 ~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  127 (289)
                      .+.|.|.|+.|... ...+.++++++.++. +|..+.  +++++|++++|++.+..+.+|.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            46899999988643 456789999999885 555444  68999999999999777778999999999999999999555


Q ss_pred             CccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCC
Q 045366          128 PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVR  207 (289)
Q Consensus       128 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  207 (289)
                      +..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            56678899999999999999977777889999999999999999987788899999999999999999976667789999


Q ss_pred             CCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       208 ~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      +|++|++++|.+++..+. +..+++|++|++++|+++ .++...+..+++|+.|++++|.+..
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence            999999999999988776 888999999999999998 6776666689999999999998863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=6.2e-30  Score=224.35  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  143 (289)
                      +++.++++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            34444444444444444444555555555555555554444445555555555555555542222223445555555555


Q ss_pred             CCcCCCCcchhccCCCCCceeeeeccccc
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      +|.+.+..+..|..+++|++|++++|.+.
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCC
Confidence            55554444444555555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1e-28  Score=207.58  Aligned_cols=206  Identities=17%  Similarity=0.201  Sum_probs=188.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  141 (289)
                      ++++.|+++++.+++..+..+..+++|++|++++|.+++..|.+|.++++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            689999999999998888889999999999999999998889999999999999999997 8766688899999999999


Q ss_pred             ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            99999998778889999999999999999997777779999999999999999997767789999999999999999998


Q ss_pred             cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      ..+. +..+++|++|++++|+++ .++...+..+++|++|++++|.+..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccC
Confidence            8665 899999999999999998 5666655589999999999998874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=4.2e-29  Score=224.59  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=178.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+.+..|..|..+++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            67888888888888877888888888888888888888666666788888888888888888777777888888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCC--------------
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN--------------  208 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--------------  208 (289)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++              
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence            888887666777778888888888888777555556677777777777777766555555555554              


Q ss_pred             ----------CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          209 ----------LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       209 ----------L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                                |++|++++|.+++.+.. +..+++|++|++++|.++ .++...+..+++|++|++++|++++..|..|.+
T Consensus       216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence                      55555555666654433 678899999999999998 455554558999999999999999888999999


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|++++|
T Consensus       295 l~~L~~L~L~~N  306 (477)
T 2id5_A          295 LNYLRVLNVSGN  306 (477)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cccCCEEECCCC
Confidence            999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.6e-29  Score=215.40  Aligned_cols=199  Identities=21%  Similarity=0.307  Sum_probs=185.7

Q ss_pred             CCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366           86 LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN  165 (289)
Q Consensus        86 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  165 (289)
                      .++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999999998 68888999999999999999999 89999999999999999999998 8899999999999999


Q ss_pred             eecccccccCChhccC---------CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEE
Q 045366          166 IAKNHLKGQLPASIGN---------LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIF  236 (289)
Q Consensus       166 l~~n~~~~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  236 (289)
                      +++|.+.+.+|..+..         +++|++|++++|.++ .+|..++.+++|++|++++|.+++.++.+..+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            9999888888877654         999999999999999 788899999999999999999998776788999999999


Q ss_pred             ccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          237 IHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       237 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus       236 Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          236 LRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            999999988887766 8999999999999999999999999999999999986

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.6e-29  Score=230.60  Aligned_cols=158  Identities=15%  Similarity=0.071  Sum_probs=121.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|++++|.+++..|..|+.+++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            57899999999999888888999999999999999998888888999999999999999988777888888889999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCc--EEeccCCcCc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI--SFNVGLNQFS  220 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~l~  220 (289)
                      ++|.+.+..+..++.+++|++|++++|.+.+..++.+..+++|++|++++|.+++..+..++.+++|+  ++++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            88888866567788888888888888887754333344477777777777766654444455555555  4444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.7e-29  Score=233.07  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  143 (289)
                      +++.|++++|.+.+..+..++.+++|+.|++++|.+.+..|..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            34444444454444444445555555555555555554444444555555555555555543222334455555555555


Q ss_pred             CCcCCCCcchhccCCCCCceeeeeccccc
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      +|.+.+..|..|+.+++|++|++++|.+.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            55555444444555555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-28  Score=215.49  Aligned_cols=224  Identities=17%  Similarity=0.211  Sum_probs=151.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            46677777777776655555677778888888888877666667777888888888888877666666777888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC----------------------
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP----------------------  200 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----------------------  200 (289)
                      ++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++...                      
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            8887774444446777888888888887776666667777777777777776543210                      


Q ss_pred             -------------------------------------ccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcc
Q 045366          201 -------------------------------------STRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRY  242 (289)
Q Consensus       201 -------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l  242 (289)
                                                           ..+..+++|++|++++|.+.+..+. +..+++|++|++++|++
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence                                                 1233456667777777777665444 66666777777777766


Q ss_pred             cccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          243 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       243 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      + .++.... .+++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus       285 ~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          285 V-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             C-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred             c-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC
Confidence            5 3443332 5666666666666666 44555555666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.8e-28  Score=225.01  Aligned_cols=246  Identities=15%  Similarity=0.197  Sum_probs=192.1

Q ss_pred             cCCCCCCCCCCC----cccceeC------CC----------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCc
Q 045366           41 MNSWNNSINLCQ----WTGVTCG------HR----------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR  100 (289)
Q Consensus        41 ~~~w~~~~~~c~----~~~~~c~------~~----------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  100 (289)
                      +++|.++..||.    |..+.|+      ..          ..+++.++++++.+....+..+..+++|+.|++++|.+.
T Consensus         9 l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~   88 (597)
T 3oja_B            9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE   88 (597)
T ss_dssp             --CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred             ccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC
Confidence            567887776663    4433332      10          145678888888888776667888999999999999999


Q ss_pred             ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhcc
Q 045366          101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIG  180 (289)
Q Consensus       101 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  180 (289)
                      +..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|+.+++|++|++++|.+.+..|..+.
T Consensus        89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  168 (597)
T 3oja_B           89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  168 (597)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence            88888999999999999999999987778889999999999999999865556678999999999999999988888888


Q ss_pred             CCCCCCEEEccCccCcccC-----------------------------------------------------------Cc
Q 045366          181 NLSTLQEINVNGNRLSGRI-----------------------------------------------------------PS  201 (289)
Q Consensus       181 ~~~~L~~L~l~~n~~~~~~-----------------------------------------------------------~~  201 (289)
                      .+++|++|++++|.+++..                                                           +.
T Consensus       169 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  248 (597)
T 3oja_B          169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA  248 (597)
T ss_dssp             TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred             cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence            8999999988888776421                                                           12


Q ss_pred             cccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366          202 TRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN  280 (289)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  280 (289)
                      .+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++ +|.... .+++|+.|+|++|.++ .+|..+..+++
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~  325 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDR  325 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccc-cCCCCcEEECCCCCCC-ccCcccccCCC
Confidence            245667888888888888877665 7788888888888888873 554443 6788888888888887 56666777777


Q ss_pred             CCeEeCcCC
Q 045366          281 LHKLDINRN  289 (289)
Q Consensus       281 L~~L~l~~N  289 (289)
                      |+.|++++|
T Consensus       326 L~~L~L~~N  334 (597)
T 3oja_B          326 LENLYLDHN  334 (597)
T ss_dssp             CSEEECCSS
T ss_pred             CCEEECCCC
Confidence            777777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.5e-28  Score=224.01  Aligned_cols=226  Identities=17%  Similarity=0.198  Sum_probs=131.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCc-cccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT-NLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  141 (289)
                      ++++.+++++|.++ .+|+.+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .+..+++|++|+
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            34555555555554 3444555555555555555555544455555555555555555555544433 255566666666


Q ss_pred             ccCCcCCCCc--chhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc-cccCCCCCcEEeccCCc
Q 045366          142 ASNNKLEGEI--PAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRNLISFNVGLNQ  218 (289)
Q Consensus       142 l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~  218 (289)
                      +++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            6666665433  45566666666666666666655566666666666666666666544332 35666666666666666


Q ss_pred             CcccCCC-CCCCCCCCEEEccCCccccc-Cc-hhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          219 FSGMFPP-INNISSLEYIFIHKNRYHGS-LP-LDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       219 l~~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.+..+. +..+++|++|++++|.+.+. ++ ...+..+++|++|++++|++++..|..+.++++|++|++++|
T Consensus       437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            6655444 56666666666666666532 11 122235666666666666666555666666666666666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.7e-28  Score=215.02  Aligned_cols=220  Identities=16%  Similarity=0.191  Sum_probs=193.0

Q ss_pred             eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      ...+++++.+++. +|..+.  ++++.|+|++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3457777777765 455444  6899999999999988899999999999999999999988888999999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccC
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      |.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|+ +....+..+..+++|++|++++|.+++. 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            99997767779999999999999999997777789999999999999954 5544455789999999999999999976 


Q ss_pred             CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.+..+++|++|++++|.+++..|..+ .++++|+.|++++|++++..+..|.++++|+.|+|++|
T Consensus       212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          212 PNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             CCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            458888999999999999985555554 49999999999999999888999999999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=2.2e-29  Score=230.05  Aligned_cols=160  Identities=15%  Similarity=0.155  Sum_probs=137.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      +.++.|++++|.+++..|..+..+++|++|++++|++.+..|.+|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            57999999999999888889999999999999999999888889999999999999999999766667999999999999


Q ss_pred             cCCcCCC-CcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccC---------------
Q 045366          143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSH---------------  205 (289)
Q Consensus       143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---------------  205 (289)
                      ++|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.               
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9999985 456788999999999999998544444 67889999999999999998777766654               


Q ss_pred             ---------CCCCcEEeccCCcCccc
Q 045366          206 ---------VRNLISFNVGLNQFSGM  222 (289)
Q Consensus       206 ---------~~~L~~L~l~~n~l~~~  222 (289)
                               +++|++|++++|.+++.
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             ccchhhHhhcccccEEEccCCccccc
Confidence                     56777777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.7e-29  Score=234.67  Aligned_cols=207  Identities=22%  Similarity=0.302  Sum_probs=168.1

Q ss_pred             CCccccCCCCCcEEEccCCCCccc-----------------CCcccc--cccccccccccccccCCCCCccccCCCCCcE
Q 045366           79 LSPFVGYLSFLRSINLVNNSLRAE-----------------IPHEVG--NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVK  139 (289)
Q Consensus        79 ~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  139 (289)
                      +|+.++++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+..+++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            678899999999999999999985                 899988  9999999999999999999999999999999


Q ss_pred             EEccCCc-CCC-CcchhccCC------CCCceeeeecccccccCCh--hccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366          140 FEASNNK-LEG-EIPAEISNL------LKFQILNIAKNHLKGQLPA--SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL  209 (289)
Q Consensus       140 L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  209 (289)
                      |++++|+ +++ .+|..++.+      ++|++|++++|.+. .+|.  .++.+++|++|++++|.++|.+| .++.+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            9999998 887 788888776      89999999999998 7887  88999999999999999987788 78888888


Q ss_pred             cEEeccCCcCcccCCCCCCCCC-CCEEEccCCcccccCchhhhcC--CCCCcEEEccccccccccCcccc-------CCC
Q 045366          210 ISFNVGLNQFSGMFPPINNISS-LEYIFIHKNRYHGSLPLDIGVN--LPNLRFFIISGNNLTGSLQDSLS-------NTT  279 (289)
Q Consensus       210 ~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~-------~~~  279 (289)
                      ++|++++|.++.++..+..+++ |++|++++|.++ .+|..+. .  +++|++|++++|.+++.+|..+.       .++
T Consensus       356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            8888888888755545777777 888888888777 6665433 2  23666677777666666665555       555


Q ss_pred             CCCeEeCcCC
Q 045366          280 NLHKLDINRN  289 (289)
Q Consensus       280 ~L~~L~l~~N  289 (289)
                      +|++|++++|
T Consensus       434 ~L~~L~Ls~N  443 (636)
T 4eco_A          434 NVSSINLSNN  443 (636)
T ss_dssp             CEEEEECCSS
T ss_pred             CCCEEECcCC
Confidence            6666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.1e-28  Score=230.97  Aligned_cols=144  Identities=21%  Similarity=0.242  Sum_probs=84.0

Q ss_pred             CCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-CcccccccccccccccccccCCCCCc
Q 045366           51 CQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQNLTLTNNYFSGKIPT  129 (289)
Q Consensus        51 c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~  129 (289)
                      |++..+.+  ..++++.|++++|.+++..+..|..+++|+.|++++|...+.+ |.+|.++++|++|++++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45555555  2267778888888877766666666666666666666443333 55566666666666666666655555


Q ss_pred             cccCCCCCcEEEccCCcCCCCcchh--ccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCc
Q 045366          130 NLSRCSNLVKFEASNNKLEGEIPAE--ISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       130 ~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~  196 (289)
                      .|.++++|++|++++|.+.+..+..  |+.+++|++|++++|.+.+..+ ..++++++|++|++++|.++
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            6666666666666666655433333  5555556666665555554332 34555555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=8.4e-30  Score=216.99  Aligned_cols=218  Identities=15%  Similarity=0.169  Sum_probs=181.2

Q ss_pred             eEEEeccCCCCC-CcCCcccc-------CCCCCcEEEccCCCCcccCCccc--ccccccccccccccccCCCCCccccCC
Q 045366           65 VIGLDLRHQSIR-GFLSPFVG-------YLSFLRSINLVNNSLRAEIPHEV--GNLFKLQNLTLTNNYFSGKIPTNLSRC  134 (289)
Q Consensus        65 v~~l~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l  134 (289)
                      ++.+++++|.+. ..++..+.       .+++|++|++++|.+++..|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            444555555552 23444443       68999999999999998888876  8899999999999999966 8777766


Q ss_pred             -----CCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--CChhc--cCCCCCCEEEccCccCccc--CC-cc
Q 045366          135 -----SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASI--GNLSTLQEINVNGNRLSGR--IP-ST  202 (289)
Q Consensus       135 -----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~--~~-~~  202 (289)
                           ++|++|++++|.+.+..+..|+.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++.  .+ ..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 8999999999999988789999999999999999998754  34444  8899999999999999831  22 34


Q ss_pred             ccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366          203 RSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN  280 (289)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  280 (289)
                      +..+++|++|++++|.+++..+  .+..+++|++|++++|+++ .+|..++   ++|++|++++|++++. |. +..+++
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            4678999999999999998764  2677899999999999998 8887664   8999999999999965 66 999999


Q ss_pred             CCeEeCcCC
Q 045366          281 LHKLDINRN  289 (289)
Q Consensus       281 L~~L~l~~N  289 (289)
                      |++|++++|
T Consensus       298 L~~L~L~~N  306 (312)
T 1wwl_A          298 VGNLSLKGN  306 (312)
T ss_dssp             EEEEECTTC
T ss_pred             CCEEeccCC
Confidence            999999988

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=211.73  Aligned_cols=220  Identities=15%  Similarity=0.175  Sum_probs=192.6

Q ss_pred             eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      ...+++++.+++. +|..+.  ++++.|+|++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            3467777777764 455454  7899999999999988889999999999999999999977778899999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccC
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      |.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+ +....+..+..+++|++|++++|.++.+ 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            99996666789999999999999999997777789999999999999955 5544456799999999999999999965 


Q ss_pred             CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.+..+++|++|++++|++++..+.. +..+++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus       201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          201 PNLTPLIKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCCTTCSSCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cccCCCcccCEEECCCCccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            45788899999999999998554544 448999999999999999888899999999999999987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=5.3e-28  Score=202.26  Aligned_cols=208  Identities=21%  Similarity=0.213  Sum_probs=160.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45788888888888776667888888888888888887766677888888888888888887666677888888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeeccccccc-CChhccCCCCCCEEEccCccCcccCCccccCCCCCc----EEeccCC
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI----SFNVGLN  217 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n  217 (289)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+    ++++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888766555678888888888888888753 577788888888888888888766666666666666    7888888


Q ss_pred             cCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366          218 QFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL  271 (289)
Q Consensus       218 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  271 (289)
                      .+.+..+......+|++|++++|+++ .+|...+..+++|+.|++++|.+....
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence            88877666434457888888888887 566665557888888888888877544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=5e-28  Score=226.54  Aligned_cols=225  Identities=20%  Similarity=0.249  Sum_probs=164.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57889999999998877778888999999999999998888888888999999999999888544456888899999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc--CCCCCcEEeccCCcCc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS--HVRNLISFNVGLNQFS  220 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~  220 (289)
                      ++|.+.+..+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++  .+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99988866667888888999999999888877777788888888888888887755444333  3456666666666665


Q ss_pred             ccCCC----------------------------------------------------CCCC--CCCCEEEccCCcccccC
Q 045366          221 GMFPP----------------------------------------------------INNI--SSLEYIFIHKNRYHGSL  246 (289)
Q Consensus       221 ~~~~~----------------------------------------------------~~~~--~~L~~L~l~~n~l~~~~  246 (289)
                      +..+.                                                    +..+  ++|++|++++|.+++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            44332                                                    2222  22666666666665333


Q ss_pred             chhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       247 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                      +..+ ..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus       265 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          265 NDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             TTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             cccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            3333 2566666666666666666666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.1e-27  Score=203.61  Aligned_cols=223  Identities=14%  Similarity=0.157  Sum_probs=129.3

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+++..|..++.+++|++|++++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence            78999999999999888999999999999999999987 4554443  57777777777776555555666677777777


Q ss_pred             cCCcCCC--CcchhccCCCCCceeeeeccccc---------------------ccCChhccCCCCCCEEEccCccCcccC
Q 045366          143 SNNKLEG--EIPAEISNLLKFQILNIAKNHLK---------------------GQLPASIGNLSTLQEINVNGNRLSGRI  199 (289)
Q Consensus       143 ~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~---------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~  199 (289)
                      ++|.+..  ..+..+..+++|++|++++|.+.                     +..+..+..+++|++|++++|.+++..
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence            7766642  44555666666666666655554                     333444444455555555555544444


Q ss_pred             CccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcC------CCCCcEEEcccccccc--cc
Q 045366          200 PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVN------LPNLRFFIISGNNLTG--SL  271 (289)
Q Consensus       200 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~~L~~L~Ls~n~l~~--~~  271 (289)
                      +..+..+++|++|++++|.++.++..+..+++|++|++++|.++ .++...+..      .+.++.|++++|.+..  ..
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~  311 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  311 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcccccccC
Confidence            44444455555555555555433333444445555555555544 233222211      2344455555554431  23


Q ss_pred             CccccCCCCCCeEeCcCC
Q 045366          272 QDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       272 ~~~~~~~~~L~~L~l~~N  289 (289)
                      |..|..+++++.+++++|
T Consensus       312 ~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGGTTCCCGGGEEC---
T ss_pred             ccccccccceeEEEeccc
Confidence            344555555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.5e-27  Score=223.39  Aligned_cols=225  Identities=19%  Similarity=0.232  Sum_probs=181.0

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC-cccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .++.+++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            56677777777777777788888888888888888876555 56788888888888888887777777888888888888


Q ss_pred             cCCcCC--CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC--------ccccCCCCCcEE
Q 045366          143 SNNKLE--GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP--------STRSHVRNLISF  212 (289)
Q Consensus       143 ~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L  212 (289)
                      ++|.+.  +..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+        ..+..+++|++|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            888775  4667788888889999998888887667778888889999998888875322        236778888999


Q ss_pred             eccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc-CCCCCCeEeCcCC
Q 045366          213 NVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS-NTTNLHKLDINRN  289 (289)
Q Consensus       213 ~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~N  289 (289)
                      ++++|.++.+++. +..+++|++|++++|+++ .+|...+..+++|+.|++++|++++..+..+. .+++|+.|++++|
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            9998888876665 788888999999988887 67777666788899999999988877777676 7888889988887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=3.6e-28  Score=222.80  Aligned_cols=223  Identities=19%  Similarity=0.245  Sum_probs=174.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            68999999999999888889999999999999999999888999999999999999999998 67766  7899999999


Q ss_pred             cCCcCCC-CcchhccCCCCCceeeeecccccccC-------------------------ChhccCCC-------------
Q 045366          143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLKGQL-------------------------PASIGNLS-------------  183 (289)
Q Consensus       143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------------~~~~~~~~-------------  183 (289)
                      ++|.+.+ ..|..|+.+++|++|++++|.+.+..                         |..+..+.             
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  208 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL  208 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence            9999985 34688999999999999988775321                         11111111             


Q ss_pred             --------------------------------------------------------------------CCCEEEccCccC
Q 045366          184 --------------------------------------------------------------------TLQEINVNGNRL  195 (289)
Q Consensus       184 --------------------------------------------------------------------~L~~L~l~~n~~  195 (289)
                                                                                          +|++|++++|.+
T Consensus       209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  288 (562)
T 3a79_B          209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI  288 (562)
T ss_dssp             CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred             hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence                                                                                455555555655


Q ss_pred             cccCCccc-----------------------------------------------------cCCCCCcEEeccCCcCccc
Q 045366          196 SGRIPSTR-----------------------------------------------------SHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       196 ~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++.+|..+                                                     ..+++|++|++++|.+++.
T Consensus       289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (562)
T 3a79_B          289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS  368 (562)
T ss_dssp             CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred             eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence            55555443                                                     5667888888888888875


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCch--hhhcCCCCCcEEEccccccccccCc-cccCCCCCCeEeCcCC
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPL--DIGVNLPNLRFFIISGNNLTGSLQD-SLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~N  289 (289)
                      .+. +..+++|++|++++|++++ ++.  ..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             hhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            554 7888888888888888873 332  2234788888899988888875554 4788888999988876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=203.02  Aligned_cols=219  Identities=16%  Similarity=0.159  Sum_probs=188.8

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCC--CCccccCCCCCcEEEcc
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK--IPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~  143 (289)
                      +.+++++++++.. |..+.  +++++|++++|+++...+..|.++++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            4688888888754 44333  6899999999999865555689999999999999998722  25667788999999999


Q ss_pred             CCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc-
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG-  221 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-  221 (289)
                      +|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            99998 677789999999999999999986554 578999999999999999998888899999999999999999987 


Q ss_pred             -cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          222 -MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       222 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                       .+..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence             334489999999999999999855555554 8999999999999999877778999999999999987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.7e-27  Score=199.16  Aligned_cols=217  Identities=18%  Similarity=0.167  Sum_probs=186.1

Q ss_pred             EeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcC
Q 045366           68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL  147 (289)
Q Consensus        68 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  147 (289)
                      ++..+..+.. +|..+.  +++++|++++|++++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            4555555543 444443  5799999999999987777899999999999999999976777899999999999999999


Q ss_pred             CCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCccc-CCccccCCCCCcEEeccCCcCcccCCC-
Q 045366          148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR-IPSTRSHVRNLISFNVGLNQFSGMFPP-  225 (289)
Q Consensus       148 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-  225 (289)
                      .+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|.+++..+. 
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            977778899999999999999999977776799999999999999999863 588999999999999999999987664 


Q ss_pred             CCCCCCCC----EEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          226 INNISSLE----YIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       226 ~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +..+++++    +|++++|.++ .++...+ ...+|++|++++|++++..+..+..+++|++|++++|
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             hhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            55555666    8999999998 5666666 5568999999999999777777899999999999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=217.38  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+.+..|..+..+++|++|++++|++++..|.+|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            56777777777777666667777777777777777777666777777777777777777776 45544  6677777777


Q ss_pred             cCCcCCC-CcchhccCCCCCceeeeeccccc
Q 045366          143 SNNKLEG-EIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       143 ~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      ++|.+.+ .+|..|+.+++|++|++++|.+.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccc
Confidence            7777764 35666666666666666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=3.2e-28  Score=219.17  Aligned_cols=213  Identities=17%  Similarity=0.187  Sum_probs=188.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+.+..|..+..+++|+.|+|++|.+.+..|  |..+++|++|++++|.+++ +|    ..++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence            589999999999999888899999999999999999987655  8999999999999999983 33    2389999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCcccc-CCCCCcEEeccCCcCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRS-HVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~  221 (289)
                      ++|.+.+..+.   .+++|++|++++|.+.+..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            99999865543   468999999999999988888899999999999999999988887776 78999999999999998


Q ss_pred             cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .++ ...+++|++|++++|.+++ +|+.+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       184 ~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          184 VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EEC-CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             ccc-cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            743 4468999999999999984 565655 8899999999999999 57888999999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=3.4e-28  Score=207.54  Aligned_cols=213  Identities=17%  Similarity=0.191  Sum_probs=184.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+++..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence            579999999999998888899999999999999999986554  8899999999999999983 33    3389999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc-cCCCCCcEEeccCCcCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR-SHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~  221 (289)
                      ++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++
T Consensus       107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            99999854433   46889999999999998777788899999999999999997767666 478999999999999998


Q ss_pred             cCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       222 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ... ...+++|++|++++|+++ .+|+.+. .+++|++|++++|+++ .+|..+..+++|+.|++++|
T Consensus       184 ~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          184 VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             ccc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence            743 345889999999999998 5666655 8899999999999999 67888999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.9e-26  Score=192.24  Aligned_cols=198  Identities=19%  Similarity=0.277  Sum_probs=176.7

Q ss_pred             CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366           88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA  167 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  167 (289)
                      ..+.+++++++++ .+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            5789999999998 4676554  689999999999996666789999999999999999986666677899999999999


Q ss_pred             cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366          168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL  246 (289)
Q Consensus       168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~  246 (289)
                      +|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|.++ .+
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence            9999977777889999999999999999987788899999999999999999988776 889999999999999998 56


Q ss_pred             chhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       247 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +...+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            6665558999999999999999777777999999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.7e-27  Score=220.10  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=161.1

Q ss_pred             ccCCCCCcEEEccCCCCccc--CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcc-hhccCCC
Q 045366           83 VGYLSFLRSINLVNNSLRAE--IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP-AEISNLL  159 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~  159 (289)
                      +..+++|++|++++|.+++.  .|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            44566677777777777654  3666777788888888888777 466777888888888888888876666 5778888


Q ss_pred             CCceeeeecccccccCChhccCCCCCCEEEccCccCcc-cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEc
Q 045366          160 KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFI  237 (289)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l  237 (289)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+. +..+++|++|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            88888888888887788888888888888888888876 3677888888888888888888887765 788888888888


Q ss_pred             cCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC-CCCeEeCcCC
Q 045366          238 HKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT-NLHKLDINRN  289 (289)
Q Consensus       238 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~N  289 (289)
                      ++|++++..|..+. .+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus       505 s~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          505 SHNNLLFLDSSHYN-QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CSSCCSCEEGGGTT-TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred             CCCcCCCcCHHHcc-CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence            88888855555554 7888888888888888 6666688886 5888888877

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=5.3e-27  Score=201.36  Aligned_cols=223  Identities=17%  Similarity=0.183  Sum_probs=158.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+++..|..++.+++|++|++++|++. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred             CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence            68999999999999888899999999999999999998 4565544  78999999999998655566888899999999


Q ss_pred             cCCcCC--CCcchhccCC--------------------CCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366          143 SNNKLE--GEIPAEISNL--------------------LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP  200 (289)
Q Consensus       143 ~~n~~~--~~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (289)
                      ++|.+.  +..+..+..+                    ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus       155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred             CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence            998875  2445555444                    355556666666665555566677777777777777776555


Q ss_pred             ccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcC------CCCCcEEEccccccc--cccC
Q 045366          201 STRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVN------LPNLRFFIISGNNLT--GSLQ  272 (289)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~~L~~L~Ls~n~l~--~~~~  272 (289)
                      ..+..+++|++|++++|.++.++..+..+++|++|++++|+++ .++...+..      .+.++.|++++|.+.  +..|
T Consensus       235 ~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCc
Confidence            6677777777777777777755444666777777777777776 344333212      355677777777665  4555


Q ss_pred             ccccCCCCCCeEeCcCC
Q 045366          273 DSLSNTTNLHKLDINRN  289 (289)
Q Consensus       273 ~~~~~~~~L~~L~l~~N  289 (289)
                      ..|..+++|+.+++++|
T Consensus       314 ~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGTTBCCSTTEEC---
T ss_pred             ccccccchhhhhhcccc
Confidence            66777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=206.48  Aligned_cols=228  Identities=17%  Similarity=0.204  Sum_probs=192.3

Q ss_pred             CCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCC
Q 045366           47 SINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK  126 (289)
Q Consensus        47 ~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  126 (289)
                      ....|.|.++ |          +++++.++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++.
T Consensus        26 ~~~~C~~~~~-c----------~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-C----------KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-E----------ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-e----------eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence            3455666654 4          456677664 455444  5899999999999987777899999999999999999977


Q ss_pred             CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCcc-CcccCCcccc
Q 045366          127 IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNR-LSGRIPSTRS  204 (289)
Q Consensus       127 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~  204 (289)
                      .|..+..+++|++|++++|.++...+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|. +.+..+..++
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            78889999999999999999996555669999999999999999995433 478999999999999994 7766678899


Q ss_pred             CCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-------------
Q 045366          205 HVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS-------------  270 (289)
Q Consensus       205 ~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------------  270 (289)
                      .+++|++|++++|.+.+..+. +..+++|++|++++|.+. .++..++..+++|+.|++++|.+++.             
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence            999999999999999988665 899999999999999996 67777665789999999999999863             


Q ss_pred             ------------------cCccccCCCCCCeEeCcCC
Q 045366          271 ------------------LQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       271 ------------------~~~~~~~~~~L~~L~l~~N  289 (289)
                                        +|+.+.++++|++|++++|
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence                              3445788999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.1e-26  Score=215.22  Aligned_cols=109  Identities=23%  Similarity=0.176  Sum_probs=82.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|||++|.|++..+..|..+++|++|+|++|++++..|++|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47899999999998877788888999999999999888777778888888888888888887544456677777777777


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHL  171 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  171 (289)
                      ++|++++..+..|+.+++|++|++++|.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            77766654444555566666666555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.1e-30  Score=216.78  Aligned_cols=219  Identities=18%  Similarity=0.156  Sum_probs=183.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCc-ccCCcccc-------cccccccccccccccCCCCCccc--c
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR-AEIPHEVG-------NLFKLQNLTLTNNYFSGKIPTNL--S  132 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~  132 (289)
                      .+++.+++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            5678888899988  567655543  889999999994 44666554       68999999999999998888876  8


Q ss_pred             CCCCCcEEEccCCcCCCCcchhccCC-----CCCceeeeecccccccCChhccCCCCCCEEEccCccCccc--CCccc--
Q 045366          133 RCSNLVKFEASNNKLEGEIPAEISNL-----LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR--IPSTR--  203 (289)
Q Consensus       133 ~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~--  203 (289)
                      .+++|++|++++|.+.+. |..++.+     ++|++|++++|++.+..+..++.+++|++|++++|.+.+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            899999999999999866 7777776     8999999999999988888999999999999999998754  23333  


Q ss_pred             cCCCCCcEEeccCCcCcccC---CC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC
Q 045366          204 SHVRNLISFNVGLNQFSGMF---PP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT  279 (289)
Q Consensus       204 ~~~~~L~~L~l~~n~l~~~~---~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  279 (289)
                      ..+++|++|++++|.+++..   .. +..+++|++|++++|++++..|...+..+++|++|++++|+++ .+|..+.  +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence            88999999999999998432   22 4577899999999999997665454546899999999999999 7787776  8


Q ss_pred             CCCeEeCcCC
Q 045366          280 NLHKLDINRN  289 (289)
Q Consensus       280 ~L~~L~l~~N  289 (289)
                      +|++||+++|
T Consensus       275 ~L~~L~Ls~N  284 (312)
T 1wwl_A          275 KLSVLDLSYN  284 (312)
T ss_dssp             EEEEEECCSS
T ss_pred             CceEEECCCC
Confidence            9999999987

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=8.5e-27  Score=223.06  Aligned_cols=112  Identities=17%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             CeeEEEeccCCCCCCcC-CccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCcc--ccCCCCCcE
Q 045366           63 QRVIGLDLRHQSIRGFL-SPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTN--LSRCSNLVK  139 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~  139 (289)
                      .+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.+.+..|..  +..+++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            56667777776544333 566677777777777777777666777777777777777777776544443  666777777


Q ss_pred             EEccCCcCCCCcc-hhccCCCCCceeeeeccccccc
Q 045366          140 FEASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQ  174 (289)
Q Consensus       140 L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~  174 (289)
                      |++++|.+.+..+ ..|+.+++|++|++++|.+.+.
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            7777776664433 4566667777777666665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=4.4e-27  Score=217.36  Aligned_cols=225  Identities=20%  Similarity=0.214  Sum_probs=192.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67999999999999988889999999999999999999888999999999999999999999777999999999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCCc----EEeccCC
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLI----SFNVGLN  217 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n  217 (289)
                      ++|.+.+..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+    ++++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999987777889999999999999999986 5699999999999999999999988788887776654    8999999


Q ss_pred             cCcccCCCCCCCCCCCEEEccCCcccccCchhh-----------------------------------------------
Q 045366          218 QFSGMFPPINNISSLEYIFIHKNRYHGSLPLDI-----------------------------------------------  250 (289)
Q Consensus       218 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------------------------------------  250 (289)
                      .+++..+......+|++|++++|.+.+...+..                                               
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            999888774344489999999987642111110                                               


Q ss_pred             ---------hcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          251 ---------GVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       251 ---------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                               +..+++|+.|++++|.+. .+| .+..+++|+.|++++|
T Consensus       272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n  317 (606)
T 3vq2_A          272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRC  317 (606)
T ss_dssp             TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESC
T ss_pred             ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccc
Confidence                     224577888888888876 555 6888888888888876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2.7e-26  Score=193.27  Aligned_cols=198  Identities=17%  Similarity=0.254  Sum_probs=171.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.+++++++++.. |..+.  ++++.|++++|.+.+..+..|.++++|++|++++|.+++ ++.. ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence            5688899999998854 54443  689999999999998788889999999999999999984 4433 68899999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            999998 7788888999999999999999977778899999999999999999977777788999999999999999987


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++. +..+++|++|++++|+++ .+|..++ ..++|+.+++++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence            776 788899999999999998 8888887 7789999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.1e-26  Score=207.98  Aligned_cols=153  Identities=22%  Similarity=0.354  Sum_probs=110.6

Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc--cCChhccCCCCCCEEEccCccCcccCCc-cccCCCC
Q 045366          132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG--QLPASIGNLSTLQEINVNGNRLSGRIPS-TRSHVRN  208 (289)
Q Consensus       132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~  208 (289)
                      ..+++|++|++++|.+.+..|..++.+++|++|++++|++.+  .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            455667777777777766666667777777777777777764  3445667777777777777777653443 4666777


Q ss_pred             CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc-ccCCCCCCeEeC
Q 045366          209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLHKLDI  286 (289)
Q Consensus       209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l  286 (289)
                      |++|++++|.+++..+. +.  ++|++|++++|+++ .+|..++ .+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            77777777777654443 32  67888888888887 7887777 8888999999999888 45554 888889999998


Q ss_pred             cCC
Q 045366          287 NRN  289 (289)
Q Consensus       287 ~~N  289 (289)
                      ++|
T Consensus       476 ~~N  478 (520)
T 2z7x_B          476 HTN  478 (520)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=6e-27  Score=222.45  Aligned_cols=200  Identities=18%  Similarity=0.259  Sum_probs=158.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-Ccc-cCCccccccc-------ccccccccccccCCCCCc--cc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-LRA-EIPHEVGNLF-------KLQNLTLTNNYFSGKIPT--NL  131 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~~  131 (289)
                      ++++.|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..++       +|++|++++|.++ .+|.  .+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred             CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence            679999999999999999999999999999999998 887 7887776665       9999999999999 8888  89


Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCC-CCEEEccCccCcccCCccccCCCC--
Q 045366          132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLST-LQEINVNGNRLSGRIPSTRSHVRN--  208 (289)
Q Consensus       132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--  208 (289)
                      ..+++|++|++++|.+. .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+.  
T Consensus       570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~  645 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV  645 (876)
T ss_dssp             TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred             hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence            99999999999999998 778 8999999999999999998 78888889998 999999999988 67777766543  


Q ss_pred             CcEEeccCCcCcccCCCCC------CCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          209 LISFNVGLNQFSGMFPPIN------NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       209 L~~L~l~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      |+.|++++|.+.+.++.+.      ..++|++|++++|.++ .+|..++..+++|+.|+|++|+++
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence            8888888887766544321      2235555555555555 455544444444555555554444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=3.5e-26  Score=190.90  Aligned_cols=206  Identities=20%  Similarity=0.296  Sum_probs=182.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.++++++.+...  +.+..+++|++|++++|.+.+  ...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            6789999999988753  458889999999999999985  347889999999999999999777777899999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            99999977777789999999999999999977777789999999999999999977777789999999999999999988


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCC
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTN  280 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  280 (289)
                      ++. +..+++|++|++++|.+.+        .++.++.|+++.|.++|.+|..++.++.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            876 8899999999999998863        3567899999999999999988776553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=7.2e-26  Score=207.54  Aligned_cols=153  Identities=22%  Similarity=0.325  Sum_probs=102.2

Q ss_pred             cCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--CChhccCCCCCCEEEccCccCcccCC-ccccCCCC
Q 045366          132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASIGNLSTLQEINVNGNRLSGRIP-STRSHVRN  208 (289)
Q Consensus       132 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~  208 (289)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.  .|..+..+++|++|++++|.+++.+| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3445566666666666655566666666666666666666542  23445666666666666666665233 34556666


Q ss_pred             CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcc-ccCCCCCCeEeC
Q 045366          209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS-LSNTTNLHKLDI  286 (289)
Q Consensus       209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l  286 (289)
                      |++|++++|.+++..+. +.  ++|++|++++|+++ .+|..++ .+++|++|++++|+++ .+|.. +..+++|+.|++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence            66666666666554333 22  57888888888887 7887777 8888899999998888 55554 888888999988


Q ss_pred             cCC
Q 045366          287 NRN  289 (289)
Q Consensus       287 ~~N  289 (289)
                      ++|
T Consensus       505 ~~N  507 (562)
T 3a79_B          505 HDN  507 (562)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.3e-26  Score=209.84  Aligned_cols=177  Identities=21%  Similarity=0.257  Sum_probs=150.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|++++|.+++..+..|..+++|++|++++|++.+..+.+|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57899999999999888889999999999999999999888888999999999999999998777788999999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccCCccccCCCCC----cEEeccCC
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL----ISFNVGLN  217 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n  217 (289)
                      ++|.+....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999986555579999999999999999986 468899999999999999999987777778877777    78888888


Q ss_pred             cCcccCCC-CCCCCCCCEEEccCC
Q 045366          218 QFSGMFPP-INNISSLEYIFIHKN  240 (289)
Q Consensus       218 ~l~~~~~~-~~~~~~L~~L~l~~n  240 (289)
                      .+.+..+. +.. .+|++|++++|
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~l~~n  210 (570)
T 2z63_A          188 PMNFIQPGAFKE-IRLHKLTLRNN  210 (570)
T ss_dssp             CCCEECTTTTTT-CEEEEEEEESC
T ss_pred             CceecCHHHhcc-CcceeEecccc
Confidence            88766554 332 24555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=7.1e-26  Score=185.39  Aligned_cols=196  Identities=16%  Similarity=0.224  Sum_probs=168.1

Q ss_pred             CCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCCCCCcEEEccC-CcCCCCcchhccCCCCCcee
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRCSNLVKFEASN-NKLEGEIPAEISNLLKFQIL  164 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L  164 (289)
                      +++++|++++|++++..+.+|.++++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            489999999999998777789999999999999997 8755666889999999999998 99986666789999999999


Q ss_pred             eeecccccccCChhccCCCCCC---EEEccCc-cCcccCCccccCCCCCc-EEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366          165 NIAKNHLKGQLPASIGNLSTLQ---EINVNGN-RLSGRIPSTRSHVRNLI-SFNVGLNQFSGMFPP-INNISSLEYIFIH  238 (289)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~-~~~~~~L~~L~l~  238 (289)
                      ++++|.+.+ +|. +..+++|+   +|++++| .+++..+..+..+++|+ ++++++|.++.+++. +.. ++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999985 665 88888888   9999999 89877777899999999 999999999977665 544 899999999


Q ss_pred             CCc-ccccCchhhhcCC-CCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          239 KNR-YHGSLPLDIGVNL-PNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       239 ~n~-l~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +|+ ++ .++...+..+ ++|+.|++++|+++ .+|..  .+++|+.|+++++
T Consensus       188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCC-EECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCCCcc-cCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            995 87 6666666678 99999999999998 45543  6789999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.2e-25  Score=191.23  Aligned_cols=213  Identities=26%  Similarity=0.386  Sum_probs=134.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCC-----------------
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSG-----------------  125 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------  125 (289)
                      ++++.+++++|.+.+..+  +..+++|+.|++++|...... ..+..+++|++|++++|.+.+                 
T Consensus       110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY  186 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred             CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence            567777777777665322  556666666666666433222 224555555555555555442                 


Q ss_pred             ----CCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366          126 ----KIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS  201 (289)
Q Consensus       126 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  201 (289)
                          .++. +..+++|+++++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ + .
T Consensus       187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~  259 (347)
T 4fmz_A          187 NQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-N  259 (347)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-G
T ss_pred             Cccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-h
Confidence                2221 3444455555555554442222  5566677777777777664322  6677777777777777764 2 4


Q ss_pred             cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCC
Q 045366          202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNL  281 (289)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L  281 (289)
                      .+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|  +..+++|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhcc
Confidence            567777888888888877765 3466777888888888887754444444 78888888888888875555  7778888


Q ss_pred             CeEeCcCC
Q 045366          282 HKLDINRN  289 (289)
Q Consensus       282 ~~L~l~~N  289 (289)
                      ++|++++|
T Consensus       336 ~~L~l~~N  343 (347)
T 4fmz_A          336 DSADFANQ  343 (347)
T ss_dssp             SEESSSCC
T ss_pred             ceeehhhh
Confidence            88888876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2.2e-25  Score=187.71  Aligned_cols=178  Identities=20%  Similarity=0.194  Sum_probs=119.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+.  ..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            4566777777777666666677777777777777777643322  56667777777777776 66666666777777777


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|++++..+..|..+++|++|++++|++.+..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.++.+
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence            77777655556677777777777777777655555566677777777777777654445566677777777777777755


Q ss_pred             CCCCCCCCCCCEEEccCCccc
Q 045366          223 FPPINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~  243 (289)
                      +..+....+|+.+++++|.+.
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhhcccccCCeEEeCCCCcc
Confidence            555555566777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=2.3e-25  Score=183.78  Aligned_cols=191  Identities=19%  Similarity=0.238  Sum_probs=169.1

Q ss_pred             CCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC
Q 045366           49 NLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP  128 (289)
Q Consensus        49 ~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  128 (289)
                      .|+.|.|..|.   ...+.++++++.++. +|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            45678899996   345679999999885 455454  689999999999998888889999999999999999998888


Q ss_pred             ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCC
Q 045366          129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRN  208 (289)
Q Consensus       129 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  208 (289)
                      ..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            88999999999999999999777788999999999999999999777777899999999999999999777778999999


Q ss_pred             CcEEeccCCcCcccCCC-CCCCCCCCEEEccCCccccc
Q 045366          209 LISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGS  245 (289)
Q Consensus       209 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~  245 (289)
                      |++|++++|.+++.++. +..+++|++|++++|.+...
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999988875 88999999999999999754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=206.58  Aligned_cols=222  Identities=17%  Similarity=0.212  Sum_probs=166.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcc--------------------cccccccccccccccc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHE--------------------VGNLFKLQNLTLTNNY  122 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------~~~l~~L~~L~L~~n~  122 (289)
                      ++++.++++++.+.+ +|+.+..+ +|++|++++|.+. .+|..                    ...+++|++|++++|.
T Consensus       282 ~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          282 TNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             TTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            456677777776653 45555555 6666666666554 23321                    0456677777777777


Q ss_pred             cCCCC--CccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccC
Q 045366          123 FSGKI--PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRI  199 (289)
Q Consensus       123 l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~  199 (289)
                      +.+..  |..+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence            66332  4556677778888888877763 33347788888888888888876555 46788899999999999988878


Q ss_pred             CccccCCCCCcEEeccCCcCc-ccCC-CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          200 PSTRSHVRNLISFNVGLNQFS-GMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       200 ~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      |..+..+++|++|++++|.+. +..+ .+..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+.+
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHhhc
Confidence            888889999999999999987 3344 488889999999999999865565555 8899999999999999887888899


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|+.|++++|
T Consensus       517 l~~L~~L~l~~N  528 (570)
T 2z63_A          517 LTSLQKIWLHTN  528 (570)
T ss_dssp             CTTCCEEECCSS
T ss_pred             ccCCcEEEecCC
Confidence            999999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=7.3e-25  Score=188.99  Aligned_cols=214  Identities=21%  Similarity=0.348  Sum_probs=164.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+...  +.+..+++|++|++++|.+.+. +. +..+++|++|++++|...... ..+..+++|++|++
T Consensus        88 ~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l  162 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV  162 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred             CcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence            7899999999998864  4689999999999999999854 33 889999999999999765343 44778888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCC--------------------hhccCCCCCCEEEccCccCcccCCcc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP--------------------ASIGNLSTLQEINVNGNRLSGRIPST  202 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~~~L~~L~l~~n~~~~~~~~~  202 (289)
                      ++|.+....+  +..+++|++|++++|.+.+..+                    ..+..+++|++|++++|.+++..+  
T Consensus       163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--
Confidence            8887764332  6677777777777776653221                    115566777777777777764332  


Q ss_pred             ccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366          203 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH  282 (289)
Q Consensus       203 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  282 (289)
                      +..+++|++|++++|.+++. +.+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+++..+..++.+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-IS-V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-Ch-h-hcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            77778888888888887764 346777888888998888873 43 3 33788999999999999888888889999999


Q ss_pred             eEeCcCC
Q 045366          283 KLDINRN  289 (289)
Q Consensus       283 ~L~l~~N  289 (289)
                      +|++++|
T Consensus       315 ~L~L~~n  321 (347)
T 4fmz_A          315 TLFLSQN  321 (347)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            9999887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=2.3e-25  Score=203.52  Aligned_cols=225  Identities=16%  Similarity=0.197  Sum_probs=186.4

Q ss_pred             CCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCc
Q 045366           50 LCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT  129 (289)
Q Consensus        50 ~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  129 (289)
                      .|.|.++ |          |+++++++. +|+.+.  ++|++|++++|++++..|.+|.++++|++|++++|.+++..|.
T Consensus         3 ~C~~~~~-c----------~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-C----------DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-E----------ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-E----------ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4777766 6          344566654 455443  7899999999999988889999999999999999999987888


Q ss_pred             cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccc-cCChhccCCCCCCEEEccCccCcccC-CccccCCC
Q 045366          130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKG-QLPASIGNLSTLQEINVNGNRLSGRI-PSTRSHVR  207 (289)
Q Consensus       130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~  207 (289)
                      .|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+ +..+..++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            99999999999999999997777789999999999999999986 35678999999999999999844344 46899999


Q ss_pred             CCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc--C-ccccCCCCCCe
Q 045366          208 NLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL--Q-DSLSNTTNLHK  283 (289)
Q Consensus       208 ~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~-~~~~~~~~L~~  283 (289)
                      +|++|++++|.+++..+. +..+++|++|++++|.+. .++..++..+++|++|++++|++++..  + .....+++|+.
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence            999999999999987766 888999999999999886 667766667899999999999998642  1 22344566666


Q ss_pred             EeCcCC
Q 045366          284 LDINRN  289 (289)
Q Consensus       284 L~l~~N  289 (289)
                      |++++|
T Consensus       228 L~l~~n  233 (549)
T 2z81_A          228 LAFRGS  233 (549)
T ss_dssp             EEEESC
T ss_pred             eecccc
Confidence            666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=3.7e-25  Score=181.11  Aligned_cols=197  Identities=16%  Similarity=0.167  Sum_probs=171.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-CcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-LRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKF  140 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  140 (289)
                      ..++.+++++|.+++..+..+..+++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            579999999999998877789999999999999997 8877777899999999999998 99986666789999999999


Q ss_pred             EccCCcCCCCcchhccCCCCCc---eeeeecc-cccccCChhccCCCCCC-EEEccCccCcccCCccccCCCCCcEEecc
Q 045366          141 EASNNKLEGEIPAEISNLLKFQ---ILNIAKN-HLKGQLPASIGNLSTLQ-EINVNGNRLSGRIPSTRSHVRNLISFNVG  215 (289)
Q Consensus       141 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  215 (289)
                      ++++|.+.+ +|. |..+++|+   +|++++| .+.+..+..|..+++|+ ++++++|.++...+..+.. ++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999985 665 88888888   9999999 89877677799999999 9999999998444444544 899999999


Q ss_pred             CCc-CcccCCC-CCCC-CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366          216 LNQ-FSGMFPP-INNI-SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN  266 (289)
Q Consensus       216 ~n~-l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  266 (289)
                      +|. +++..+. +..+ ++|++|++++|+++ .+|..   .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            995 9988766 8888 99999999999998 67765   57899999998863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.8e-25  Score=183.46  Aligned_cols=200  Identities=18%  Similarity=0.253  Sum_probs=168.3

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      ..+++..+.+...  .....+++|+.|++++|.+..  ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence            3445555555443  235567899999999999873  3458889999999999999984 3 47889999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP  225 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  225 (289)
                      .+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            99977777789999999999999999977777789999999999999999977777789999999999999999988776


Q ss_pred             -CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccC
Q 045366          226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ  272 (289)
Q Consensus       226 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  272 (289)
                       +..+++|++|++++|++++ +++..+..+++|+.|++++|.+.+..|
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCc
Confidence             7889999999999999985 555555589999999999998875544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.2e-24  Score=193.31  Aligned_cols=209  Identities=24%  Similarity=0.438  Sum_probs=166.4

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+.+.  +.+..+++|++|++++|.+.+..|  +..+++|++|++++|.+.+ + ..+..+++|++|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence            5678888888887654  347778888888888888875544  6778888888888888873 3 35778888999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++.
T Consensus       251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            9888875544  7788889999999988885433  7788899999999998885433  77888999999999988876


Q ss_pred             CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+ +..+++|++|++++|++++.  +.+. .+++|+.|++++|++++..|  +..+++|++|++++|
T Consensus       325 ~~-~~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          325 SP-VSSLTKLQRLFFYNNKVSDV--SSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             hh-hccCccCCEeECCCCccCCc--hhhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            54 67788999999999988743  3443 78999999999999987766  888999999999876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-26  Score=196.17  Aligned_cols=213  Identities=15%  Similarity=0.162  Sum_probs=180.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ...+..+++.+.+.......+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+  +..+++|++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            456667888887766666666777899999999999998777889999999999999999985444  889999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+ ++    ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            9999873 22    448999999999999865443   468899999999999987788899999999999999999987


Q ss_pred             CCC-C-CCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          223 FPP-I-NNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       223 ~~~-~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+. + ..+++|++|++++|.+++ ++...  .+++|++|++++|++++ +|..+..+++|++|++++|
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYD-VKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCE-EECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred             cHHHHhhccCcCCEEECCCCcCcc-ccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCC
Confidence            655 4 478999999999999984 44332  48999999999999994 5556999999999999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=2.9e-25  Score=188.74  Aligned_cols=219  Identities=15%  Similarity=0.161  Sum_probs=174.0

Q ss_pred             eeEEEeccCCCCCCc-CCc--cccCCCCCcEEEccCCCCcccCCccc--ccccccccccccccccCCCCC----ccccCC
Q 045366           64 RVIGLDLRHQSIRGF-LSP--FVGYLSFLRSINLVNNSLRAEIPHEV--GNLFKLQNLTLTNNYFSGKIP----TNLSRC  134 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l  134 (289)
                      +++.+++.+..+... +..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            345556555554321 000  11224669999999999998888888  889999999999999986555    334578


Q ss_pred             CCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccccc--C--ChhccCCCCCCEEEccCccCcccCCc----cccCC
Q 045366          135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--L--PASIGNLSTLQEINVNGNRLSGRIPS----TRSHV  206 (289)
Q Consensus       135 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~  206 (289)
                      ++|++|++++|.+.+..+..|+.+++|++|++++|++.+.  +  +..+..+++|++|++++|.++. ++.    .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            9999999999999988888999999999999999997642  2  2234688999999999999973 332    35678


Q ss_pred             CCCcEEeccCCcCcccCCC-CCCC---CCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366          207 RNLISFNVGLNQFSGMFPP-INNI---SSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH  282 (289)
Q Consensus       207 ~~L~~L~l~~n~l~~~~~~-~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  282 (289)
                      ++|++|++++|.+.+..+. +..+   ++|++|++++|+++ .+|..++   ++|++|++++|++++. |. +..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            9999999999999988543 5554   79999999999998 7887654   7999999999999954 43 78899999


Q ss_pred             eEeCcCC
Q 045366          283 KLDINRN  289 (289)
Q Consensus       283 ~L~l~~N  289 (289)
                      .|++++|
T Consensus       298 ~L~L~~N  304 (310)
T 4glp_A          298 NLTLDGN  304 (310)
T ss_dssp             CEECSST
T ss_pred             EEECcCC
Confidence            9999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=5.2e-24  Score=190.23  Aligned_cols=186  Identities=20%  Similarity=0.271  Sum_probs=97.4

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.++++++.+++. | .++.+++|++|++++|++++. |  +..+++|++|++++|.+++ ++  +..+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence            4455555555555543 2 355555555555555555542 2  4555555555555555553 22  445555555555


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccc---------------------cCChhccCCCCCCEEEccCccCcccCCc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKG---------------------QLPASIGNLSTLQEINVNGNRLSGRIPS  201 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~  201 (289)
                      ++|.+++ ++  ++.+++|++|++++|.+.+                     .+  .+..+++|++|++++|.+++ +| 
T Consensus       114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~-  186 (457)
T 3bz5_A          114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD-  186 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-
T ss_pred             CCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec-
Confidence            5555553 22  4555555555555555543                     22  23444555555555555553 22 


Q ss_pred             cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc
Q 045366          202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS  270 (289)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  270 (289)
                       ++.+++|+.|++++|.+++.  .+..+++|++|++++|++++ +|  +. .+++|+.|++++|++++.
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC
T ss_pred             -cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCc
Confidence             44555555555555555543  24555566666666666653 44  22 556666666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=5.8e-24  Score=175.30  Aligned_cols=179  Identities=17%  Similarity=0.250  Sum_probs=156.6

Q ss_pred             CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366           88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA  167 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  167 (289)
                      ..++++++++.++ .+|..+.  +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4678999999998 5666554  689999999999998778889999999999999999998888889999999999999


Q ss_pred             cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366          168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL  246 (289)
Q Consensus       168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~  246 (289)
                      +|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|+++ .+
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence            9999977777889999999999999999976677788999999999999999988875 888999999999999998 55


Q ss_pred             chhhhcCCCCCcEEEccccccccc
Q 045366          247 PLDIGVNLPNLRFFIISGNNLTGS  270 (289)
Q Consensus       247 ~~~~~~~~~~L~~L~Ls~n~l~~~  270 (289)
                      ++..+..+++|+.|++++|.+...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            555555889999999999999855

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=187.05  Aligned_cols=201  Identities=16%  Similarity=0.158  Sum_probs=169.2

Q ss_pred             CeeEEEeccCCCCCCcCCccc--cCCCCCcEEEccCCCCcccCC----cccccccccccccccccccCCCCCccccCCCC
Q 045366           63 QRVIGLDLRHQSIRGFLSPFV--GYLSFLRSINLVNNSLRAEIP----HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSN  136 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  136 (289)
                      .+++.+++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            359999999999999988888  899999999999999987554    34557999999999999999888889999999


Q ss_pred             CcEEEccCCcCCCC--cc--hhccCCCCCceeeeecccccccCCh----hccCCCCCCEEEccCccCcccCCccccCC--
Q 045366          137 LVKFEASNNKLEGE--IP--AEISNLLKFQILNIAKNHLKGQLPA----SIGNLSTLQEINVNGNRLSGRIPSTRSHV--  206 (289)
Q Consensus       137 L~~L~l~~n~~~~~--~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--  206 (289)
                      |++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .++.+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999998642  22  234689999999999999973 232    35788999999999999998778777766  


Q ss_pred             -CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          207 -RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       207 -~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                       ++|++|++++|.++.++..+.  ++|++|++++|++++ +|.  +..+++|+.|++++|.+++
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence             699999999999997655453  799999999999984 443  2378999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=6.8e-24  Score=190.15  Aligned_cols=211  Identities=26%  Similarity=0.393  Sum_probs=114.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +.++++|++|++++|.+.+ ++. +..+++|++|++
T Consensus        68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEEC
Confidence            567777777777765433  6666777777777776664333  6666666666666666653 222 555555555555


Q ss_pred             cCCcCCCCcc-------------------hhccCCCCCceeeeeccccc----------------------ccCChhccC
Q 045366          143 SNNKLEGEIP-------------------AEISNLLKFQILNIAKNHLK----------------------GQLPASIGN  181 (289)
Q Consensus       143 ~~n~~~~~~~-------------------~~~~~l~~L~~L~l~~n~~~----------------------~~~~~~~~~  181 (289)
                      ++|.+.+...                   ..+..+++|++|++++|.+.                      +..+  ++.
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~  219 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI  219 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccc
Confidence            5555442110                   11333344444444444433                      2211  333


Q ss_pred             CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEE
Q 045366          182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFI  261 (289)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  261 (289)
                      +++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++. + ..+++|+.|+
T Consensus       220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-ISP-L-AGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGG-G-TTCTTCSEEE
T ss_pred             cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-ccc-c-cCCCccCeEE
Confidence            44444444444444321  234455555555555555554433 4555666666666666653 332 2 2566677777


Q ss_pred             ccccccccccCccccCCCCCCeEeCcCC
Q 045366          262 ISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       262 Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +++|++++..+  +..+++|+.|++++|
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCC
Confidence            77776664333  666777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.2e-25  Score=199.62  Aligned_cols=193  Identities=15%  Similarity=0.137  Sum_probs=166.4

Q ss_pred             ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366           83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ  162 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  162 (289)
                      ...+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+. +    ..++|+
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~  102 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE  102 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcC
Confidence            3345589999999999998888899999999999999999986554  88999999999999998733 3    338999


Q ss_pred             eeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CC-CCCCCCEEEccCC
Q 045366          163 ILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-IN-NISSLEYIFIHKN  240 (289)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n  240 (289)
                      +|++++|.+.+..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+. +. .+++|++|++++|
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            999999999965543   468999999999999988888999999999999999999987665 54 7899999999999


Q ss_pred             cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       241 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+++. +.. . .+++|+.|+|++|.+++ +|..+..+++|+.|++++|
T Consensus       180 ~l~~~-~~~-~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          180 FIYDV-KGQ-V-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CCCEE-ECC-C-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred             ccccc-ccc-c-cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence            99854 432 2 58999999999999995 4555999999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=6.5e-24  Score=180.24  Aligned_cols=191  Identities=17%  Similarity=0.340  Sum_probs=162.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.++++++.+... + .+..+++|++|++++|.+.+..+  +.++++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence            6789999999998763 3 58889999999999999985443  8899999999999999984 44 6889999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+ ++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence            9999985 34 38899999999999999985433  88999999999999999853 33 88999999999999999876


Q ss_pred             CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      .+ +..+++|++|++++|.+++ +++ + ..+++|+.|++++|.+++
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQISD-VSP-L-ANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCB-CGG-G-TTCTTCCEEEEEEEEEEC
T ss_pred             hh-hcCCCCCCEEEccCCccCc-ccc-c-cCCCCCCEEEccCCeeec
Confidence            54 7788999999999999984 442 3 489999999999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=3.3e-23  Score=185.04  Aligned_cols=205  Identities=17%  Similarity=0.203  Sum_probs=145.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+++. +  ++.+++|++|++++|.+++. +  +.++++|++|++++|.+++ +|  +..+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            5566677777766653 2  56666666666666666643 2  5566666666666666653 32  455555555555


Q ss_pred             cCCcCCC---------------------CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366          143 SNNKLEG---------------------EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS  201 (289)
Q Consensus       143 ~~n~~~~---------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  201 (289)
                      ++|.+++                     .+  .+..+++|++|++++|.+.+ +|  +..+++|+.|++++|.+++.   
T Consensus       135 ~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---  206 (457)
T 3bz5_A          135 ARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---  206 (457)
T ss_dssp             TTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---
T ss_pred             CCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---
Confidence            5555543                     22  35677888899999998886 44  78899999999999999864   


Q ss_pred             cccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCC-------CCcEEEccccccccccCcc
Q 045366          202 TRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLP-------NLRFFIISGNNLTGSLQDS  274 (289)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------~L~~L~Ls~n~l~~~~~~~  274 (289)
                      .++.+++|++|++++|.+++++  +..+++|++|++++|++++ +|...+..+.       +|+.|++++|.+.+.+|  
T Consensus       207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--  281 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--  281 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred             ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence            3888999999999999999853  7888999999999999985 4433221222       44556666666555565  


Q ss_pred             ccCCCCCCeEeCcCC
Q 045366          275 LSNTTNLHKLDINRN  289 (289)
Q Consensus       275 ~~~~~~L~~L~l~~N  289 (289)
                      ++.+++|+.|++++|
T Consensus       282 ~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          282 AEGCRKIKELDVTHN  296 (457)
T ss_dssp             CTTCTTCCCCCCTTC
T ss_pred             ccccccCCEEECCCC
Confidence            578899999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=2.6e-26  Score=197.19  Aligned_cols=231  Identities=15%  Similarity=0.195  Sum_probs=156.8

Q ss_pred             CcccceeCCCCCeeEEEeccCCCCCCcCCccccCC--CCCcEEEccCCCCcccCCcccccccccccccccccccCCC-CC
Q 045366           52 QWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYL--SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK-IP  128 (289)
Q Consensus        52 ~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~  128 (289)
                      .|.++.+++  ..++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++
T Consensus        38 ~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           38 RWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             HHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred             HHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence            477776653  34667777777665   3445555  6778888888877765544 45677888888888777644 66


Q ss_pred             ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc-ccccc-CChhccCCCCCCEEEccCc-cCccc-CCcccc
Q 045366          129 TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN-HLKGQ-LPASIGNLSTLQEINVNGN-RLSGR-IPSTRS  204 (289)
Q Consensus       129 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~  204 (289)
                      ..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+.
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            66777778888888888777666777777888888888877 45542 4555677778888888887 67643 455566


Q ss_pred             CCC-CCcEEeccCC--cCc-ccCC-CCCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccc-cccccCccccC
Q 045366          205 HVR-NLISFNVGLN--QFS-GMFP-PINNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLSN  277 (289)
Q Consensus       205 ~~~-~L~~L~l~~n--~l~-~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~  277 (289)
                      .++ +|++|++++|  .++ +..+ .+..+++|++|++++|. +++..+..+. .+++|++|++++|. +.......+++
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~  270 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE  270 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence            777 8888888877  343 2222 25566778888888887 5555555554 67788888888773 33333335677


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|+.|++++|
T Consensus       271 ~~~L~~L~l~~~  282 (336)
T 2ast_B          271 IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeccCc
Confidence            788888887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=4.8e-26  Score=199.32  Aligned_cols=227  Identities=17%  Similarity=0.190  Sum_probs=179.5

Q ss_pred             CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCC---cccCCccc-------ccccccccccccccccCC---
Q 045366           63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSL---RAEIPHEV-------GNLFKLQNLTLTNNYFSG---  125 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~~n~l~~---  125 (289)
                      ++++.|++++|.+...    ++..+..+++|+.|++++|.+   .+.+|..+       ..+++|++|++++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            6789999999998865    344577899999999999644   44555544       678999999999999986   


Q ss_pred             -CCCccccCCCCCcEEEccCCcCCCCcchhc----cCC---------CCCceeeeecccccc-cCC---hhccCCCCCCE
Q 045366          126 -KIPTNLSRCSNLVKFEASNNKLEGEIPAEI----SNL---------LKFQILNIAKNHLKG-QLP---ASIGNLSTLQE  187 (289)
Q Consensus       126 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~L~~  187 (289)
                       .+|..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|++.. ..+   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             366778889999999999999864333333    334         899999999999973 344   46778899999


Q ss_pred             EEccCccCcc-----cCCccccCCCCCcEEeccCCcCc----ccCC-CCCCCCCCCEEEccCCccccc----Cchhhh-c
Q 045366          188 INVNGNRLSG-----RIPSTRSHVRNLISFNVGLNQFS----GMFP-PINNISSLEYIFIHKNRYHGS----LPLDIG-V  252 (289)
Q Consensus       188 L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~-~~~~~~~L~~L~l~~n~l~~~----~~~~~~-~  252 (289)
                      |++++|.++.     ..+..+..+++|++|++++|.++    +..+ .+..+++|++|++++|.+++.    ++..+. .
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999999873     23447888999999999999995    3333 377889999999999999754    344432 1


Q ss_pred             CCCCCcEEEcccccccc----ccCccc-cCCCCCCeEeCcCC
Q 045366          253 NLPNLRFFIISGNNLTG----SLQDSL-SNTTNLHKLDINRN  289 (289)
Q Consensus       253 ~~~~L~~L~Ls~n~l~~----~~~~~~-~~~~~L~~L~l~~N  289 (289)
                      .+++|++|+|++|.+++    .+|..+ .++++|++|++++|
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            38999999999999997    477777 67899999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.91  E-value=5.1e-24  Score=194.01  Aligned_cols=209  Identities=21%  Similarity=0.318  Sum_probs=174.7

Q ss_pred             cCCCCCCCCCC-----Ccccc-eeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccc
Q 045366           41 MNSWNNSINLC-----QWTGV-TCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQ  114 (289)
Q Consensus        41 ~~~w~~~~~~c-----~~~~~-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  114 (289)
                      +.+|.....+|     .|.++ .|..  .+++.|+++++.+++ +|..+.  ++|+.|++++|+++ .+|   ..+++|+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE  103 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred             HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence            45677666777     57777 6753  579999999999987 666553  88999999999998 567   4578999


Q ss_pred             cccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCcc
Q 045366          115 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNR  194 (289)
Q Consensus       115 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  194 (289)
                      +|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence            99999999995 777 655  99999999999986 665   68999999999999996 565   57899999999999


Q ss_pred             CcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCC-------CEEEccCCcccccCchhhhcCCCCCcEEEcccccc
Q 045366          195 LSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL-------EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNL  267 (289)
Q Consensus       195 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  267 (289)
                      +++ +|. +.  ++|+.|++++|.++.++. +..  +|       ++|++++|+++ .+|..++ .+++|+.|+|++|.+
T Consensus       172 L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          172 LTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSC
T ss_pred             CCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcC
Confidence            996 666 66  899999999999997665 543  77       99999999998 7999888 699999999999999


Q ss_pred             ccccCccccCCC
Q 045366          268 TGSLQDSLSNTT  279 (289)
Q Consensus       268 ~~~~~~~~~~~~  279 (289)
                      ++.+|..+..++
T Consensus       243 ~~~~p~~l~~l~  254 (571)
T 3cvr_A          243 SSRIRESLSQQT  254 (571)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhh
Confidence            998888776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=3.1e-23  Score=176.08  Aligned_cols=189  Identities=22%  Similarity=0.370  Sum_probs=108.5

Q ss_pred             CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366           85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL  164 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  164 (289)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence            34556666666666653 33 4556666666666666665 3333 5566666666666666653 2 245566666666


Q ss_pred             eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccc
Q 045366          165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG  244 (289)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  244 (289)
                      ++++|.+.+. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+ +..+++|++|++++|.++ 
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-  186 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-  186 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-
Confidence            6666666532 2 25666666666666666653322  5566666666666666655433 555666666666666665 


Q ss_pred             cCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          245 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       245 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .++. + ..+++|++|++++|++++..+  +..+++|+.|++++|
T Consensus       187 ~~~~-l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          187 DISP-L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCGG-G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred             cChh-h-cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence            2332 2 256666666666666663332  566666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=5.1e-23  Score=189.49  Aligned_cols=201  Identities=25%  Similarity=0.328  Sum_probs=117.5

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.++. +|.   .+++|++|++++|+++. +|.   .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence            345555555555553 232   34556666666666552 333   3455555555555555 2332   2334444444


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeeccccccc--CChhcc--------------CCCCCCEEEccCccCcccCCcccc--
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQ--LPASIG--------------NLSTLQEINVNGNRLSGRIPSTRS--  204 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~--------------~~~~L~~L~l~~n~~~~~~~~~~~--  204 (289)
                      ++|.+.. +|..   +++|++|++++|.+.+.  .+..+.              .+++|+.|++++|.+++ +|..+.  
T Consensus       129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L  203 (622)
T 3g06_A          129 FGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL  203 (622)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             CCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence            4444432 2221   24555555555555431  111111              12556666666666553 222111  


Q ss_pred             ---------------CCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          205 ---------------HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       205 ---------------~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                                     .+++|++|++++|.+++++   ..+++|++|++++|+++ .+|.    .+++|+.|++++|+++ 
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-  274 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-  274 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-
Confidence                           1256777777777777644   34467888888888887 5665    4688999999999999 


Q ss_pred             ccCccccCCCCCCeEeCcCC
Q 045366          270 SLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+|..+.++++|+.|++++|
T Consensus       275 ~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          275 RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             SCCGGGGGSCTTCEEECCSC
T ss_pred             cCCHHHhhccccCEEEecCC
Confidence            78888999999999999987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=5.4e-23  Score=177.67  Aligned_cols=233  Identities=19%  Similarity=0.146  Sum_probs=167.7

Q ss_pred             CCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccC-Cccccccccccc-cccc
Q 045366           51 CQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI-PHEVGNLFKLQN-LTLT  119 (289)
Q Consensus        51 c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L~  119 (289)
                      |.+..+.|+..         ..++++|++++|.|+...+..|..+++|++|+|++|++.+.+ +.+|.+++++++ +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            55666677532         146788888888888766667888888888888888876544 456778877665 5556


Q ss_pred             ccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec-ccccccCChhccCCC-CCCEEEccCccCcc
Q 045366          120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK-NHLKGQLPASIGNLS-TLQEINVNGNRLSG  197 (289)
Q Consensus       120 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~  197 (289)
                      +|++....|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            6788766677788888888888888888766556666667777888865 455544444555554 57888899988884


Q ss_pred             cCCccccCCCCCcEEeccC-CcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccc
Q 045366          198 RIPSTRSHVRNLISFNVGL-NQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL  275 (289)
Q Consensus       198 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  275 (289)
                       ++......++|+++++.+ |.++.+++. +..+++|++|++++|+++ .+|...   +.+|+.|.+.++.-.+.+|. +
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCCC-T
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCCC-c
Confidence             444444556788888864 666666554 788889999999999887 777653   46777777766644446674 7


Q ss_pred             cCCCCCCeEeCcCC
Q 045366          276 SNTTNLHKLDINRN  289 (289)
Q Consensus       276 ~~~~~L~~L~l~~N  289 (289)
                      .++++|+.++++++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            88889999988753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=2.3e-25  Score=193.41  Aligned_cols=227  Identities=18%  Similarity=0.208  Sum_probs=174.4

Q ss_pred             CeeEEEeccCCCCCCcCC----ccccCCC-CCcEEEccCCCCcccCCcccccc-----cccccccccccccCCCCCcc--
Q 045366           63 QRVIGLDLRHQSIRGFLS----PFVGYLS-FLRSINLVNNSLRAEIPHEVGNL-----FKLQNLTLTNNYFSGKIPTN--  130 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~--  130 (289)
                      .+++.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            458999999999987766    6778888 89999999999987777777765     89999999999998655553  


Q ss_pred             --ccCC-CCCcEEEccCCcCCCCcchhc----cC-CCCCceeeeecccccccC----ChhccCCC-CCCEEEccCccCcc
Q 045366          131 --LSRC-SNLVKFEASNNKLEGEIPAEI----SN-LLKFQILNIAKNHLKGQL----PASIGNLS-TLQEINVNGNRLSG  197 (289)
Q Consensus       131 --~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~~~~~~-~L~~L~l~~n~~~~  197 (289)
                        +..+ ++|++|++++|.++...+..+    .. .++|++|++++|.+.+..    +..+...+ +|++|++++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              4444 799999999999986555444    34 359999999999998543    34445665 99999999999986


Q ss_pred             cCCccc----cCC-CCCcEEeccCCcCccc-----CCCCCC-CCCCCEEEccCCcccccCch---hhhcCCCCCcEEEcc
Q 045366          198 RIPSTR----SHV-RNLISFNVGLNQFSGM-----FPPINN-ISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIIS  263 (289)
Q Consensus       198 ~~~~~~----~~~-~~L~~L~l~~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls  263 (289)
                      ..+..+    ... ++|++|++++|.+.+.     ...+.. .++|++|++++|.+.+..+.   ..+..+++|++|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            655433    344 5999999999999862     222333 45899999999999854442   233467899999999


Q ss_pred             ccccccc-------cCccccCCCCCCeEeCcCC
Q 045366          264 GNNLTGS-------LQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       264 ~n~l~~~-------~~~~~~~~~~L~~L~l~~N  289 (289)
                      +|.+.+.       ++..+..+++|+.||+++|
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            9985432       3345778889999999987

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=9.9e-23  Score=163.13  Aligned_cols=159  Identities=17%  Similarity=0.199  Sum_probs=128.3

Q ss_pred             CCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeee
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNI  166 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  166 (289)
                      +++++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            57899999999998766667888999999999999988655566788899999999999888666666788888999999


Q ss_pred             ecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccC
Q 045366          167 AKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL  246 (289)
Q Consensus       167 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  246 (289)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+      .++++++|++..|+++|.+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence            8888886666667888888888888888886666667888888888888887664      3456778888888888888


Q ss_pred             chhhh
Q 045366          247 PLDIG  251 (289)
Q Consensus       247 ~~~~~  251 (289)
                      |.++.
T Consensus       182 p~~~~  186 (208)
T 2o6s_A          182 RNSAG  186 (208)
T ss_dssp             BCTTS
T ss_pred             eccCc
Confidence            86655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.7e-25  Score=190.90  Aligned_cols=223  Identities=16%  Similarity=0.168  Sum_probs=177.0

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC----ccccccc-ccccccccccccCCCCCccccCC-----CC
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP----HEVGNLF-KLQNLTLTNNYFSGKIPTNLSRC-----SN  136 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  136 (289)
                      ..+++.+.+++.+|..+...++|++|++++|.+.+..+    .+|.+++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35788899999888888877889999999999987666    6788888 99999999999997667666654     89


Q ss_pred             CcEEEccCCcCCCCcchhc----cCC-CCCceeeeecccccccCChhc----cC-CCCCCEEEccCccCcccC----Ccc
Q 045366          137 LVKFEASNNKLEGEIPAEI----SNL-LKFQILNIAKNHLKGQLPASI----GN-LSTLQEINVNGNRLSGRI----PST  202 (289)
Q Consensus       137 L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~----~~~  202 (289)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+.+..+..+    .. .++|++|++++|.+++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999986666544    445 899999999999987655443    34 369999999999998543    334


Q ss_pred             ccCCC-CCcEEeccCCcCcccCCC-----CCCC-CCCCEEEccCCccccc----CchhhhcCCCCCcEEEcccccccccc
Q 045366          203 RSHVR-NLISFNVGLNQFSGMFPP-----INNI-SSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNNLTGSL  271 (289)
Q Consensus       203 ~~~~~-~L~~L~l~~n~l~~~~~~-----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~  271 (289)
                      +...+ +|++|++++|.+++..+.     +... ++|++|++++|.+.+.    ++..+....++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 999999999999866542     3344 5999999999999853    44445433569999999999998654


Q ss_pred             C----ccccCCCCCCeEeCcCC
Q 045366          272 Q----DSLSNTTNLHKLDINRN  289 (289)
Q Consensus       272 ~----~~~~~~~~L~~L~l~~N  289 (289)
                      +    ..+..+++|+.|++++|
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHhcCCCccEEEeccC
Confidence            4    44578899999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.5e-22  Score=160.81  Aligned_cols=163  Identities=20%  Similarity=0.292  Sum_probs=145.0

Q ss_pred             ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366          110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN  189 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  189 (289)
                      .+++++|++++|.+++..+..+..+++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35899999999999966666788999999999999999976667789999999999999999977667789999999999


Q ss_pred             ccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +++|.+++..+..+..+++|++|++++|.+++.++. +..+++|++|++++|.+.+        .++.++.|+++.|+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCC
Confidence            999999977777789999999999999999988776 8889999999999998763        4678999999999999


Q ss_pred             cccCccccCCCC
Q 045366          269 GSLQDSLSNTTN  280 (289)
Q Consensus       269 ~~~~~~~~~~~~  280 (289)
                      |.+|..++.++.
T Consensus       179 g~ip~~~~~l~~  190 (208)
T 2o6s_A          179 GVVRNSAGSVAP  190 (208)
T ss_dssp             TTBBCTTSSBCT
T ss_pred             ceeeccCccccC
Confidence            999988877664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=1.7e-22  Score=174.59  Aligned_cols=222  Identities=14%  Similarity=0.078  Sum_probs=173.7

Q ss_pred             ceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCC-ccccCC
Q 045366           56 VTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP-TNLSRC  134 (289)
Q Consensus        56 ~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  134 (289)
                      ..|..     +.++.++++++. +|..+.  +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.++
T Consensus         7 C~C~~-----~~v~C~~~~Lt~-iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L   78 (350)
T 4ay9_X            7 CHCSN-----RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   78 (350)
T ss_dssp             SEEET-----TEEEEESTTCCS-CCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred             cEeeC-----CEEEecCCCCCc-cCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence            56653     357888888885 465553  689999999999997666789999999999999999875555 567889


Q ss_pred             CCCcE-EEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccC-ccCcccCCccccCCC-CCcE
Q 045366          135 SNLVK-FEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG-NRLSGRIPSTRSHVR-NLIS  211 (289)
Q Consensus       135 ~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~  211 (289)
                      +++++ +.+..|++....+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..++ .++.
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            88876 56677899877788999999999999999999976666667777888899976 456655555666654 6899


Q ss_pred             EeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEe
Q 045366          212 FNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD  285 (289)
Q Consensus       212 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  285 (289)
                      |++++|.++.+.+......++++|++.+++..+.+|...|..+++|++||+++|+++...+..+.++++|+.++
T Consensus       159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  232 (350)
T ss_dssp             EECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred             hccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence            99999999988777555678999999864433489988877999999999999999954444555554444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=5.5e-23  Score=183.45  Aligned_cols=204  Identities=20%  Similarity=0.222  Sum_probs=92.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccc-------------------------------
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLF-------------------------------  111 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------  111 (289)
                      ..++.++++++.+ +.+|+.++++++|++|++++|.+.+.+|..++++.                               
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            3455555555555 44555555555555555555555555555554443                               


Q ss_pred             --ccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366          112 --KLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN  189 (289)
Q Consensus       112 --~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  189 (289)
                        +|++|++++|.+++ +|..   .++|++|++++|.+.+ ++.   ..++|++|++++|.+.+ +| .++.+++|++|+
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence              45555555555543 3322   1344444444444432 111   01456666666666653 44 466666666666


Q ss_pred             ccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      +++|.+++ +|..+   ++|++|++++|.+++.+ .+..+++|++|++++|.+++ +|..    .++|++|++++|.++ 
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-
Confidence            66666653 33322   35666666666655532 45555556666665555542 3321    234555555555555 


Q ss_pred             ccCccccCCCCCCeEeCcCC
Q 045366          270 SLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~N  289 (289)
                      .+|. ++.+++|++|++++|
T Consensus       229 ~lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          229 ELPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             SCCC-CTTCTTCCEEECCSS
T ss_pred             cccc-cCCCCCCCEEECCCC
Confidence            4442 555555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=8.6e-23  Score=189.08  Aligned_cols=213  Identities=16%  Similarity=0.129  Sum_probs=170.3

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  146 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  146 (289)
                      +.+.++.+++. +|..+.  +.+++|+|++|+|++..+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            45677777764 455453  579999999999998888899999999999999999997777889999999999999999


Q ss_pred             CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc-cCCccccCCCCCcEEeccCCcCcccCCC
Q 045366          147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG-RIPSTRSHVRNLISFNVGLNQFSGMFPP  225 (289)
Q Consensus       147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~  225 (289)
                      +.+..+..|..+++|++|++++|++.+..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|.+++..+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            986667789999999999999999997777789999999999999999875 3578889999999999999999887664


Q ss_pred             -CCCCC----CCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc-cCccccCCCCCCeE
Q 045366          226 -INNIS----SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSLSNTTNLHKL  284 (289)
Q Consensus       226 -~~~~~----~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L  284 (289)
                       +..+.    ....++++.|.+. .++...+ ....++.+++++|..... .+..+..++.++..
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             cccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccc
Confidence             43332    3457888888887 5555555 455677888887755432 23345555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.7e-24  Score=184.59  Aligned_cols=203  Identities=17%  Similarity=0.237  Sum_probs=155.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      .+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5678889999888876555 55688999999999988755 677788889999999999988767777788889999999


Q ss_pred             ccCC-cCCC-CcchhccCCCCCceeeeecc-ccccc-CChhccCCC-CCCEEEccCc--cCc-ccCCccccCCCCCcEEe
Q 045366          142 ASNN-KLEG-EIPAEISNLLKFQILNIAKN-HLKGQ-LPASIGNLS-TLQEINVNGN--RLS-GRIPSTRSHVRNLISFN  213 (289)
Q Consensus       142 l~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~  213 (289)
                      +++| .+++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9998 5664 35666788899999999998 77754 566677888 9999999988  444 34566677888999999


Q ss_pred             ccCCc-CcccCC-CCCCCCCCCEEEccCCc-ccccCchhhhcCCCCCcEEEccccccc
Q 045366          214 VGLNQ-FSGMFP-PINNISSLEYIFIHKNR-YHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       214 l~~n~-l~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +++|. +++... .+..+++|++|++++|. +.......+ ..+++|++|++++| ++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cC
Confidence            99888 554333 37778889999998885 221111123 36888999999888 54

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=1.2e-21  Score=174.76  Aligned_cols=206  Identities=27%  Similarity=0.325  Sum_probs=107.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.+++++|.+++ +|..+   .+|++|++++|++++ +| .+.++++|++|++++|.+++ +|...   ++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence            567777777777765 34322   466677777776664 44 46666666666666666652 33221   34555555


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhc-----------------cCCCCCCEEEccCccCcc--cCCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASI-----------------GNLSTLQEINVNGNRLSG--RIPSTR  203 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~~~~--~~~~~~  203 (289)
                      ++|.+. .+| .++.+++|++|++++|++.+ +|..+                 ...++|++|++++|.+++  ..|..+
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L  299 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL  299 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcC
Confidence            555554 333 24455555555555554442 12110                 012445555555555543  111111


Q ss_pred             c-------------CC-CCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          204 S-------------HV-RNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       204 ~-------------~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      .             .+ ++|++|++++|.+++++..   +++|++|++++|.++ .+|.    .+++|++|++++|++++
T Consensus       300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS
T ss_pred             CEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCc
Confidence            1             11 3566666666666653322   356777777777776 4554    35778888888888887


Q ss_pred             --ccCccccCC-------------CCCCeEeCcCC
Q 045366          270 --SLQDSLSNT-------------TNLHKLDINRN  289 (289)
Q Consensus       270 --~~~~~~~~~-------------~~L~~L~l~~N  289 (289)
                        .+|..++++             ++|++||+++|
T Consensus       372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             CCCCCTTCCEEECCC--------------------
T ss_pred             CCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence              677777666             77888888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=4.8e-24  Score=186.64  Aligned_cols=210  Identities=20%  Similarity=0.291  Sum_probs=170.1

Q ss_pred             CCccccCCCCCcEEEccCCCCcccC----Cccccccccccccccccccc---CCCCCccc-------cCCCCCcEEEccC
Q 045366           79 LSPFVGYLSFLRSINLVNNSLRAEI----PHEVGNLFKLQNLTLTNNYF---SGKIPTNL-------SRCSNLVKFEASN  144 (289)
Q Consensus        79 ~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~l~~  144 (289)
                      ++..+..+++|++|++++|.+.+..    +..+..+++|++|++++|.+   .+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            5667778899999999999998653    34477899999999999754   34455444       6889999999999


Q ss_pred             CcCCC----CcchhccCCCCCceeeeecccccccCChh----ccCC---------CCCCEEEccCccCc-ccCC---ccc
Q 045366          145 NKLEG----EIPAEISNLLKFQILNIAKNHLKGQLPAS----IGNL---------STLQEINVNGNRLS-GRIP---STR  203 (289)
Q Consensus       145 n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~---------~~L~~L~l~~n~~~-~~~~---~~~  203 (289)
                      |.+..    .++..+..+++|++|++++|.+.+..+..    +..+         ++|++|++++|.++ +..+   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99986    47778899999999999999997544333    3334         89999999999997 3344   467


Q ss_pred             cCCCCCcEEeccCCcCc--c---cCC-CCCCCCCCCEEEccCCccc----ccCchhhhcCCCCCcEEEccccccccc---
Q 045366          204 SHVRNLISFNVGLNQFS--G---MFP-PINNISSLEYIFIHKNRYH----GSLPLDIGVNLPNLRFFIISGNNLTGS---  270 (289)
Q Consensus       204 ~~~~~L~~L~l~~n~l~--~---~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~---  270 (289)
                      ..+++|++|++++|.+.  +   ..+ .+..+++|++|++++|.++    ..+|..+. .+++|++|+|++|.+++.   
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHH
Confidence            78899999999999998  3   344 5778899999999999996    45666555 889999999999999865   


Q ss_pred             -cCcccc--CCCCCCeEeCcCC
Q 045366          271 -LQDSLS--NTTNLHKLDINRN  289 (289)
Q Consensus       271 -~~~~~~--~~~~L~~L~l~~N  289 (289)
                       ++..+.  .+++|+.|+|++|
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHHHhhccCCCeEEEECcCC
Confidence             566664  4999999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=4.2e-21  Score=174.85  Aligned_cols=174  Identities=22%  Similarity=0.334  Sum_probs=150.2

Q ss_pred             CCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366           88 FLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA  167 (289)
Q Consensus        88 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  167 (289)
                      +++.|++++|++++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999986 67655  378999999999998 777   457899999999999986 666 655  99999999


Q ss_pred             cccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCc
Q 045366          168 KNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLP  247 (289)
Q Consensus       168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  247 (289)
                      +|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++++. +.  ++|++|++++|+++ .+|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence            999996 665   68999999999999995 665   57899999999999998655 55  89999999999998 777


Q ss_pred             hhhhcCCCCC-------cEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          248 LDIGVNLPNL-------RFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       248 ~~~~~~~~~L-------~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      . +. .  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus       197 ~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          197 A-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             C-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             h-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            7 43 2  66       99999999999 68888888999999999998

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2.1e-24  Score=192.93  Aligned_cols=227  Identities=17%  Similarity=0.155  Sum_probs=118.1

Q ss_pred             CeeEEEeccCCCCCCcCCcc-----ccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccCCCCCcccc-
Q 045366           63 QRVIGLDLRHQSIRGFLSPF-----VGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFSGKIPTNLS-  132 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-  132 (289)
                      ++++.|++++|.+.+..+..     ....++|++|++++|.+++.    ++..+..+++|++|++++|.+....+..+. 
T Consensus       113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  192 (461)
T 1z7x_W          113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ  192 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence            56666676666654321211     11234566666666655532    233344445555555555554322111111 


Q ss_pred             ----CCCCCcEEEccCCcCCCC----cchhccCC-----------------------------CCCceeeeeccccccc-
Q 045366          133 ----RCSNLVKFEASNNKLEGE----IPAEISNL-----------------------------LKFQILNIAKNHLKGQ-  174 (289)
Q Consensus       133 ----~l~~L~~L~l~~n~~~~~----~~~~~~~l-----------------------------~~L~~L~l~~n~~~~~-  174 (289)
                          ..++|++|++++|.++..    ++..+..+                             ++|++|++++|.+++. 
T Consensus       193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~  272 (461)
T 1z7x_W          193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG  272 (461)
T ss_dssp             HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence                123444455544444421    23333344                             4455555555544432 


Q ss_pred             ---CChhccCCCCCCEEEccCccCcccCCccccC-----CCCCcEEeccCCcCcccC----C-CCCCCCCCCEEEccCCc
Q 045366          175 ---LPASIGNLSTLQEINVNGNRLSGRIPSTRSH-----VRNLISFNVGLNQFSGMF----P-PINNISSLEYIFIHKNR  241 (289)
Q Consensus       175 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~----~-~~~~~~~L~~L~l~~n~  241 (289)
                         ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++..    + .+..+++|++|++++|.
T Consensus       273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence               2333444555555555555554322222221     145566666666555331    1 13445778888888887


Q ss_pred             ccccCchhhhc----CCCCCcEEEcccccccc----ccCccccCCCCCCeEeCcCC
Q 045366          242 YHGSLPLDIGV----NLPNLRFFIISGNNLTG----SLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       242 l~~~~~~~~~~----~~~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +.+..+..+..    ..++|++|++++|.+++    .++..+..+++|++|++++|
T Consensus       353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            76443433331    25688888888888875    66777788888888888876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=7e-24  Score=189.57  Aligned_cols=226  Identities=16%  Similarity=0.175  Sum_probs=144.8

Q ss_pred             eeEEEeccCCCCCC----cCCccccCCCCCcEEEccCCCCcccCCcccc-----cccccccccccccccCCC----CCcc
Q 045366           64 RVIGLDLRHQSIRG----FLSPFVGYLSFLRSINLVNNSLRAEIPHEVG-----NLFKLQNLTLTNNYFSGK----IPTN  130 (289)
Q Consensus        64 ~v~~l~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~  130 (289)
                      +++.|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            57888888888774    4567778888888888888887654333332     245688888888887743    2445


Q ss_pred             ccCCCCCcEEEccCCcCCCCcchhcc-----CCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCcccC--
Q 045366          131 LSRCSNLVKFEASNNKLEGEIPAEIS-----NLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGRI--  199 (289)
Q Consensus       131 ~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--  199 (289)
                      +..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+.    ++..+..+++|++|++++|.+++..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            56678888888888887644333332     356888888888888753    4556667788888888888776432  


Q ss_pred             ---CccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhh----cCCCCCcEEEcccccc
Q 045366          200 ---PSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIG----VNLPNLRFFIISGNNL  267 (289)
Q Consensus       200 ---~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~Ls~n~l  267 (289)
                         +..+..+++|++|++++|.+++.     ...+..+++|++|++++|.+.+..+..+.    ...++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               12223466777777777777652     22244556677777777766533222221    1224666666666666


Q ss_pred             ccc----cCccccCCCCCCeEeCcCC
Q 045366          268 TGS----LQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       268 ~~~----~~~~~~~~~~L~~L~l~~N  289 (289)
                      ++.    ++..+..+++|++|++++|
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCC
Confidence            543    3444555666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=2.3e-21  Score=163.17  Aligned_cols=168  Identities=17%  Similarity=0.277  Sum_probs=89.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.++++++.+...  +.+..+++|++|++++|++.+..+  +.++++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            3455556655555443  225555556666666665553322  5555566666666655552 22 2555555666666


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            65555532  3455555555555555555533  345555555555555555553322  55555555555555555543


Q ss_pred             CCCCCCCCCCCEEEccCCccc
Q 045366          223 FPPINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~  243 (289)
                      . .+..+++|+.|++++|++.
T Consensus       194 ~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          194 R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G-GGTTCTTCSEEEEEEEEEE
T ss_pred             h-hhccCCCCCEEECcCCccc
Confidence            2 2455555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=5.5e-21  Score=165.72  Aligned_cols=175  Identities=19%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCcccc-CCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      +.+++++++++ .+|..+.  +.+++|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57899999887 4666553  4689999999999866666676 899999999999999866677899999999999999


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-C---CCCCCCCEEEccCCcccc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-I---NNISSLEYIFIHKNRYHG  244 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~---~~~~~L~~L~l~~n~l~~  244 (289)
                      |++....+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++++.. +   ..+++|++|++++|+++ 
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence            999877777788999999999999999877788899999999999999999876655 4   56889999999999998 


Q ss_pred             cCchhhhcCCCC--CcEEEccccccc
Q 045366          245 SLPLDIGVNLPN--LRFFIISGNNLT  268 (289)
Q Consensus       245 ~~~~~~~~~~~~--L~~L~Ls~n~l~  268 (289)
                      .+|...+..++.  ++.|++++|.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            666555546666  478999998876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=9.8e-21  Score=153.81  Aligned_cols=166  Identities=18%  Similarity=0.194  Sum_probs=135.5

Q ss_pred             CCCCCCCCCCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccccc
Q 045366           42 NSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN  121 (289)
Q Consensus        42 ~~w~~~~~~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  121 (289)
                      ..|..+...|.|.++.|.            ++.+.. +|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus        10 ~~~~~~~~~Cs~~~v~c~------------~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N   74 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCR------------SKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN   74 (229)
T ss_dssp             -CCCCTTCEEETTEEECT------------TSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccCCCCCEEeCCEeEcc------------CCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence            346666677777776664            333432 343333  78999999999999888888999999999999999


Q ss_pred             ccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCc
Q 045366          122 YFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPS  201 (289)
Q Consensus       122 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  201 (289)
                      .+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|++. .+|..+..+++|++|++++|.+++..+.
T Consensus        75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            998555566788999999999999998776777889999999999999998 6788889999999999999999876667


Q ss_pred             cccCCCCCcEEeccCCcCcccC
Q 045366          202 TRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       202 ~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      .+..+++|+.|++++|.+....
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHhCCCCCCEEEeeCCCccCCc
Confidence            7889999999999999887554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=7.5e-21  Score=160.03  Aligned_cols=189  Identities=19%  Similarity=0.309  Sum_probs=157.2

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      ..+.+....+.+..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus        27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCC
Confidence            33455555555432  245678999999999999853 4 48889999999999999984 444 889999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP  225 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  225 (289)
                      .+.+ ++ .+..+++|++|++++|++.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence            9984 33 489999999999999999863  5688999999999999999854  678899999999999999998765 


Q ss_pred             CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccc
Q 045366          226 INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGS  270 (289)
Q Consensus       226 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  270 (289)
                      +..+++|++|++++|.++ .++. + ..+++|+.|++++|.++..
T Consensus       174 l~~l~~L~~L~L~~N~i~-~l~~-l-~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEEEEEEEECC
T ss_pred             hcCCCccCEEECCCCcCC-CChh-h-ccCCCCCEEECcCCcccCC
Confidence            888999999999999998 4553 4 4899999999999999853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.7e-20  Score=151.51  Aligned_cols=152  Identities=19%  Similarity=0.248  Sum_probs=126.1

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  146 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  146 (289)
                      .+++++++++. +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus        15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            57777777765 354443  689999999999997777789999999999999999987778889999999999999999


Q ss_pred             CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      ++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+++++++|.+..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            986656667888899999999998887778888888888888888888887666778888888888888887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.9e-20  Score=151.15  Aligned_cols=154  Identities=16%  Similarity=0.211  Sum_probs=128.5

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCC-cccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIP-HEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      .++++++.++. +|..+.  ..+++|++++|++++..+ ..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            78889988876 455543  456899999999987654 45888999999999999998777778889999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccC
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      .+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+....
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            998777778888999999999999988777888888888999999888888777888888888888888888876443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.1e-20  Score=163.88  Aligned_cols=175  Identities=17%  Similarity=0.200  Sum_probs=149.4

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccc-cccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVG-NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      +.++++++.+.. +|..+.  +.++.|+|++|++++..+..|. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            368888888876 455444  5689999999999988788887 899999999999999977778899999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccc---cCCCCCcEEeccCCcCcc
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTR---SHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~  221 (289)
                      |.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+   ..+++|+.|++++|.+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99997767789999999999999999998888899999999999999999996444445   578999999999999997


Q ss_pred             cCCC-CCCCCC--CCEEEccCCccc
Q 045366          222 MFPP-INNISS--LEYIFIHKNRYH  243 (289)
Q Consensus       222 ~~~~-~~~~~~--L~~L~l~~n~l~  243 (289)
                      ++.. +..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            6654 555555  488999999986

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=3.8e-20  Score=149.37  Aligned_cols=152  Identities=16%  Similarity=0.225  Sum_probs=135.2

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN  169 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  169 (289)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57889999887 4666554  68999999999999766778999999999999999999777899999999999999999


Q ss_pred             cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccc
Q 045366          170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHG  244 (289)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~  244 (289)
                      .+....+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99966666688999999999999999988888999999999999999999988876 8889999999999999863

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=5.7e-20  Score=148.36  Aligned_cols=155  Identities=17%  Similarity=0.198  Sum_probs=136.1

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCC-ccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIP-TNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      +.+++++|.++. +|..+.  ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            589999999984 676553  467899999999986544 4578999999999999999977777899999999999999


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP  247 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~  247 (289)
                      |.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+....+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999987788899999999999999999988889999999999999999999998765 8899999999999999875554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=1.1e-20  Score=173.70  Aligned_cols=168  Identities=17%  Similarity=0.294  Sum_probs=127.1

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ..++.|+++++.+...  +.+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+ +| .+..+++|++|++
T Consensus        43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            5677788888877653  247778888888888888875443  7788888888888888873 33 5777888888888


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.. + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.+++.
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            8888874 2 4577888888888888888754  567788888888888888875544  77788888888888888765


Q ss_pred             CCCCCCCCCCCEEEccCCccc
Q 045366          223 FPPINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~  243 (289)
                       +.+..+++|+.|++++|.+.
T Consensus       191 -~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          191 -RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -GGGTTCTTCSEEECCSEEEE
T ss_pred             -hHHccCCCCCEEEccCCcCc
Confidence             34677788888888888776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=4.7e-20  Score=169.49  Aligned_cols=191  Identities=18%  Similarity=0.311  Sum_probs=158.9

Q ss_pred             eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      +..+.+..+.+....+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+. +. +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence            4445566666655433  4677899999999999974 34 588999999999999999854 43 88999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP  224 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  224 (289)
                      |.+.+ ++ .+..+++|++|++++|.+.+.  +.+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+..+
T Consensus        97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            99984 33 788999999999999999853  4688999999999999999854  678899999999999999998766


Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccccc
Q 045366          225 PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSL  271 (289)
Q Consensus       225 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  271 (289)
                       +..+++|++|++++|.+++ ++ .+. .+++|+.|+|++|.+.+..
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~-l~-~l~-~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISD-LR-ALA-GLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCB-CG-GGT-TCTTCSEEECCSEEEECCC
T ss_pred             -hccCCCCCEEECcCCCCCC-Ch-HHc-cCCCCCEEEccCCcCcCCc
Confidence             8889999999999999984 44 444 8999999999999998643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.5e-19  Score=146.85  Aligned_cols=155  Identities=18%  Similarity=0.245  Sum_probs=135.3

Q ss_pred             CcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366           89 LRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus        89 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            467888888887 5666543  7999999999999988888899999999999999999866667789999999999999


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLP  247 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~  247 (289)
                      |.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+....+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999777777899999999999999998 7888889999999999999999988766 8889999999999999875443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=5.4e-20  Score=169.39  Aligned_cols=192  Identities=23%  Similarity=0.299  Sum_probs=132.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ++++.|++++|.+++ +|.   .+++|++|++++|++++ +|.   .+++|++|++++|.++ .+|..   +++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence            678999999999875 444   56788888888888874 333   3455666666666555 33432   244555555


Q ss_pred             cCCcCCCCcch---hcc--------------CCCCCceeeeecccccccCChhc-----------------cCCCCCCEE
Q 045366          143 SNNKLEGEIPA---EIS--------------NLLKFQILNIAKNHLKGQLPASI-----------------GNLSTLQEI  188 (289)
Q Consensus       143 ~~n~~~~~~~~---~~~--------------~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L  188 (289)
                      ++|.+++ +|.   .+.              .+++|+.|++++|.+.+ +|..+                 ..+++|+.|
T Consensus       149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L  226 (622)
T 3g06_A          149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL  226 (622)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence            5555442 111   111              22566666666666653 22111                 123678999


Q ss_pred             EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++++|.+++ +|   ..+++|+.|++++|.+++++.   .+++|++|++++|+++ .+|..+. .+++|+.|++++|.++
T Consensus       227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~-~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLS  297 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGG-GSCTTCEEECCSCCCC
T ss_pred             EccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHh-hccccCEEEecCCCCC
Confidence            999998884 55   456899999999999997655   5679999999999998 8888766 8999999999999999


Q ss_pred             cccCccccC
Q 045366          269 GSLQDSLSN  277 (289)
Q Consensus       269 ~~~~~~~~~  277 (289)
                      +..|..+..
T Consensus       298 ~~~~~~l~~  306 (622)
T 3g06_A          298 ERTLQALRE  306 (622)
T ss_dssp             HHHHHHHHH
T ss_pred             CcCHHHHHh
Confidence            887776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=2.7e-20  Score=147.69  Aligned_cols=151  Identities=15%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEE
Q 045366          110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEIN  189 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  189 (289)
                      +++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344444444444443 233 2334444444444444332  112344444444444444444433344444444444444


Q ss_pred             ccCccCcccCCccccCCCCCcEEeccCCc-CcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          190 VNGNRLSGRIPSTRSHVRNLISFNVGLNQ-FSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +++|.+++..+..++.+++|++|++++|. +... +.+..+++|++|++++|.+++ ++ .+. .+++|++|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIE-DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGG-GCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-Hhc-cCCCCCEEEeeCcccC
Confidence            44444443334444444444444444444 3222 234444455555555555442 22 222 4455555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=5.6e-20  Score=145.86  Aligned_cols=153  Identities=16%  Similarity=0.265  Sum_probs=95.9

Q ss_pred             cCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCce
Q 045366           84 GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQI  163 (289)
Q Consensus        84 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  163 (289)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44566667777776666 344 4666667777777766554  2235666667777777777666555666666677777


Q ss_pred             eeeecccccccCChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcc
Q 045366          164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRY  242 (289)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  242 (289)
                      |++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|++|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            7777776666556666666777777777766 44 333 4666667777777777666543 455666677777776665


Q ss_pred             c
Q 045366          243 H  243 (289)
Q Consensus       243 ~  243 (289)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.81  E-value=1.1e-21  Score=184.26  Aligned_cols=163  Identities=21%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             CCCcccceeCCCCCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcc---------cCCcccccccccccccccc
Q 045366           50 LCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA---------EIPHEVGNLFKLQNLTLTN  120 (289)
Q Consensus        50 ~c~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~  120 (289)
                      ...|.+..++.  ++++.+++.++.+... +..+     ++.++|+.+.+.+         ..+..|..++.|++|+|++
T Consensus       162 ~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~  233 (727)
T 4b8c_D          162 SGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN  233 (727)
T ss_dssp             --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred             cccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCC
Confidence            34566655544  5677777777766543 2211     2223333332221         2345555666666666666


Q ss_pred             cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366          121 NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP  200 (289)
Q Consensus       121 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (289)
                      |.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|
T Consensus       234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp  309 (727)
T 4b8c_D          234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP  309 (727)
T ss_dssp             SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred             CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence            6665 55555556666666666666665 55666666666666666666666 45656666666666666666665 455


Q ss_pred             ccccCCCCCcEEeccCCcCcccCC
Q 045366          201 STRSHVRNLISFNVGLNQFSGMFP  224 (289)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~~~~  224 (289)
                      ..++.+++|++|+|++|.+++.++
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             hhhhcCCCccEEeCCCCccCCCCh
Confidence            556666666666666666655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=4.5e-22  Score=181.79  Aligned_cols=196  Identities=17%  Similarity=0.191  Sum_probs=159.5

Q ss_pred             cCCCCCcEEEccCCCCcccCCcccccccccccccccccc-------------cCCCCCccccCCCCCcEEE-ccCCcCCC
Q 045366           84 GYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-------------FSGKIPTNLSRCSNLVKFE-ASNNKLEG  149 (289)
Q Consensus        84 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~  149 (289)
                      ..+++|+.|+|++|.++ .+|..++++++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56789999999999997 689999999999999997775             3455667777788888888 5555432 


Q ss_pred             Ccch------hccC--CCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          150 EIPA------EISN--LLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       150 ~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      .++.      .+..  ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            1111      1111  1358999999999995 665 899999999999999999 789999999999999999999998


Q ss_pred             cCCCCCCCCCCCEEEccCCcccccC-chhhhcCCCCCcEEEccccccccccCc---cccCCCCCCeEeC
Q 045366          222 MFPPINNISSLEYIFIHKNRYHGSL-PLDIGVNLPNLRFFIISGNNLTGSLQD---SLSNTTNLHKLDI  286 (289)
Q Consensus       222 ~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~L~l  286 (289)
                      ++ .+..+++|++|++++|++++.. |..+. .+++|+.|+|++|.+++..|.   .+..+++|+.|++
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            54 7889999999999999998655 76766 899999999999999976553   3456899999975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=5.5e-20  Score=152.46  Aligned_cols=171  Identities=20%  Similarity=0.313  Sum_probs=143.5

Q ss_pred             CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366           85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL  164 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  164 (289)
                      .+.++..++++++.+++..  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3556777889999988543  5788999999999999998 566 68889999999999999985444  8999999999


Q ss_pred             eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccc
Q 045366          165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHG  244 (289)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  244 (289)
                      ++++|++.+ ++. +.. ++|++|++++|.+++ + ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence            999999985 343 333 899999999999985 3 36889999999999999999863 57888999999999999985


Q ss_pred             cCchhhhcCCCCCcEEEccccccccc
Q 045366          245 SLPLDIGVNLPNLRFFIISGNNLTGS  270 (289)
Q Consensus       245 ~~~~~~~~~~~~L~~L~Ls~n~l~~~  270 (289)
                      .  ..+ ..+++|+.|++++|.+++.
T Consensus       165 ~--~~l-~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGL-TRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTS-TTCCCCCEEEEEEEEEECC
T ss_pred             h--HHh-ccCCCCCEEeCCCCcccCC
Confidence            4  333 4889999999999999854

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=3.7e-20  Score=153.50  Aligned_cols=168  Identities=16%  Similarity=0.258  Sum_probs=143.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.++++++.+++..  .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            45667788888887653  57788999999999999984 55 68899999999999999984 444 899999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|.+.+ ++.. .. ++|++|++++|++.+.  +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus        93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            9999984 4433 23 9999999999999863  4689999999999999999854 3 688999999999999999987


Q ss_pred             CCCCCCCCCCCEEEccCCcccc
Q 045366          223 FPPINNISSLEYIFIHKNRYHG  244 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~~  244 (289)
                       ..+..+++|++|++++|++.+
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -HHhccCCCCCEEeCCCCcccC
Confidence             558899999999999999973

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=3.3e-18  Score=132.02  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=93.5

Q ss_pred             CCCcEEEccCCCCc-ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366           87 SFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN  165 (289)
Q Consensus        87 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  165 (289)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            66777777777776 55676677777777777777777643  5667777777777777777755666666677777777


Q ss_pred             eecccccccC-ChhccCCCCCCEEEccCccCcccCC---ccccCCCCCcEEeccCCcCcccC
Q 045366          166 IAKNHLKGQL-PASIGNLSTLQEINVNGNRLSGRIP---STRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       166 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      +++|.+.+.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+...+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            7777776432 2566677777777777777764333   35666677777777766665443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=2.2e-19  Score=168.68  Aligned_cols=183  Identities=19%  Similarity=0.152  Sum_probs=117.6

Q ss_pred             CCCcEEEccCCCCcccCCcccccccccc-----cccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCC
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNLFKLQ-----NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF  161 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  161 (289)
                      +.++.|+|.+|.+.. .+..+.....|+     .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            457889999988875 344333322233     2333344444 56778889999999999999998 778778899999


Q ss_pred             ceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCc
Q 045366          162 QILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNR  241 (289)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  241 (289)
                      ++|+|++|.+. .+|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+..++..+..+++|++|+|++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            99999999999 88999999999999999999999 78999999999999999999998776669999999999999999


Q ss_pred             ccccCchhhhcCCCCCcEEEccccccccccCcc
Q 045366          242 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS  274 (289)
Q Consensus       242 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  274 (289)
                      +++.+|..+...-.....+++++|.+++.+|..
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            997777665411111223556666666655553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=3.5e-18  Score=134.85  Aligned_cols=129  Identities=25%  Similarity=0.380  Sum_probs=77.0

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCc-cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPT-NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      +.+++++++++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            55666666664 44544332  666666666666643332 255666666666666666655566666666666666666


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      |++.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            66665555556666666666666666665555556666666666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=4.3e-21  Score=175.31  Aligned_cols=193  Identities=12%  Similarity=0.195  Sum_probs=155.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCC-------------CcccCCccccccccccccc-ccccccCCCCC
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNS-------------LRAEIPHEVGNLFKLQNLT-LTNNYFSGKIP  128 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~  128 (289)
                      +.++.+++++|.+. .+|+.++++++|++|++++|.             ..+..|..+.++++|+.|+ ++.|.+. .++
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~  426 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLR  426 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHH
T ss_pred             ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhh
Confidence            34556778888876 578999999999999997764             4556777888899999998 5665432 111


Q ss_pred             c------cccC--CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCC
Q 045366          129 T------NLSR--CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP  200 (289)
Q Consensus       129 ~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (289)
                      .      .+..  ...|+.|++++|.+++ +|. |+.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+++ +|
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence            0      0100  1258999999999985 676 999999999999999999 789999999999999999999996 66


Q ss_pred             ccccCCCCCcEEeccCCcCcccC-CC-CCCCCCCCEEEccCCcccccCch--hhhcCCCCCcEEEc
Q 045366          201 STRSHVRNLISFNVGLNQFSGMF-PP-INNISSLEYIFIHKNRYHGSLPL--DIGVNLPNLRFFII  262 (289)
Q Consensus       201 ~~~~~~~~L~~L~l~~n~l~~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~L  262 (289)
                       .++.+++|+.|++++|.+++.. +. +..+++|++|++++|.+++..+.  .+...+++|+.|++
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             8999999999999999999985 44 99999999999999999855442  23445899999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.2e-17  Score=131.86  Aligned_cols=130  Identities=19%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCc-ccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPH-EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      +.+++++++++. +|..+.  .++++|++++|++.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            468888888854 555454  3899999999999876654 488999999999999999988888999999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCccc
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      |++++..+..|..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999977777899999999999999999988888899999999999999998754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=8.8e-18  Score=129.62  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=120.0

Q ss_pred             CeeEEEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67999999999998 67888889999999999999999865  7789999999999999999976888787899999999


Q ss_pred             ccCCcCCCCc-chhccCCCCCceeeeecccccccCC---hhccCCCCCCEEEccCccCcccCCc
Q 045366          142 ASNNKLEGEI-PAEISNLLKFQILNIAKNHLKGQLP---ASIGNLSTLQEINVNGNRLSGRIPS  201 (289)
Q Consensus       142 l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~  201 (289)
                      +++|.+.+.. +..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+. ..|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999998542 2789999999999999999996555   47899999999999999887 3443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=4.9e-18  Score=128.38  Aligned_cols=127  Identities=17%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             CCCcEEEccCCCCc-ccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceee
Q 045366           87 SFLRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILN  165 (289)
Q Consensus        87 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  165 (289)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 45555566666666666666666533  4566666666666666666655566666666666666


Q ss_pred             eeccccccc-CChhccCCCCCCEEEccCccCcccCC---ccccCCCCCcEEecc
Q 045366          166 IAKNHLKGQ-LPASIGNLSTLQEINVNGNRLSGRIP---STRSHVRNLISFNVG  215 (289)
Q Consensus       166 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~  215 (289)
                      +++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666642 23556666666667776666664433   356666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=9.4e-18  Score=143.51  Aligned_cols=102  Identities=12%  Similarity=0.160  Sum_probs=90.6

Q ss_pred             CCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCC-EEEccCCcccccCchhhhcCCCCCcE
Q 045366          182 LSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLE-YIFIHKNRYHGSLPLDIGVNLPNLRF  259 (289)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~  259 (289)
                      +++|+.+++++|.++...+.+|..+++|+++++.+| +..+... |.++++|+ .+++.+ .++ .+++..|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            789999999999998777789999999999999998 7766665 99999999 999998 676 788777879999999


Q ss_pred             EEccccccccccCccccCCCCCCeEeC
Q 045366          260 FIISGNNLTGSLQDSLSNTTNLHKLDI  286 (289)
Q Consensus       260 L~Ls~n~l~~~~~~~~~~~~~L~~L~l  286 (289)
                      +++++|+++...+..|.+|++|+.+..
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999777789999999999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.1e-17  Score=126.35  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=114.1

Q ss_pred             CeeEEEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ++++.+++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            67899999999998 67888899999999999999999865  7789999999999999999976888888899999999


Q ss_pred             ccCCcCCCC-cchhccCCCCCceeeeecccccccCC---hhccCCCCCCEEEccC
Q 045366          142 ASNNKLEGE-IPAEISNLLKFQILNIAKNHLKGQLP---ASIGNLSTLQEINVNG  192 (289)
Q Consensus       142 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~  192 (289)
                      +++|.+.+. .+..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999853 34889999999999999999997655   5788999999998863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=126.46  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=93.3

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      +.++++++.++. +|..+.  +++++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            357777777764 344333  57888888888887 56677888888888888888888666667778888888888888


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      .++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            887666667777777777777777777555555677777777777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=3e-16  Score=123.81  Aligned_cols=127  Identities=22%  Similarity=0.354  Sum_probs=70.3

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN  169 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  169 (289)
                      +.++++++.++ .+|..+.  +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666665 3444332  35666666666665 55555555666666666666665544455555556666666665


Q ss_pred             cccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc
Q 045366          170 HLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  220 (289)
                      .+.+..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            555544455555555555555555555433344555555555555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=6.9e-19  Score=161.93  Aligned_cols=128  Identities=12%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccC-CC-CCcEEEccCCC-Ccc-cCCcccccccccccccccccccCCC----CCccccCC
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGY-LS-FLRSINLVNNS-LRA-EIPHEVGNLFKLQNLTLTNNYFSGK----IPTNLSRC  134 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~-l~-~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l  134 (289)
                      ++++.|+++++.+++..+..+.. ++ +|++|++++|. +.. .++....++++|++|++++|.+.+.    ++..+..+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            44555666555544333333332 22 25555555554 110 0111123456666666666665433    11223345


Q ss_pred             CCCcEEEccCCcCCC----CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEcc
Q 045366          135 SNLVKFEASNNKLEG----EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN  191 (289)
Q Consensus       135 ~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  191 (289)
                      ++|++|++++|.+++    .++..+..+++|++|++++|.+.+ ++..+..+++|++++++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            666666666666542    223344556666666666665553 34444555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=4.8e-16  Score=120.86  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK  146 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  146 (289)
                      .++++++++... |..+  .++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        11 ~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           11 EIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            445555555432 3222  2567777777777765555556667777777777777664444455666667777776666


Q ss_pred             CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcc
Q 045366          147 LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSG  197 (289)
Q Consensus       147 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  197 (289)
                      +++..+..+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            665544555666666666666666664444444556666666666665553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=4.3e-16  Score=121.15  Aligned_cols=112  Identities=19%  Similarity=0.299  Sum_probs=62.5

Q ss_pred             CCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEec
Q 045366          135 SNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNV  214 (289)
Q Consensus       135 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  214 (289)
                      ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34555555555555433344455555555555555555444444555566666666666665444444555666666666


Q ss_pred             cCCcCcccCCC-CCCCCCCCEEEccCCcccccC
Q 045366          215 GLNQFSGMFPP-INNISSLEYIFIHKNRYHGSL  246 (289)
Q Consensus       215 ~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~  246 (289)
                      ++|.+++.++. +..+++|++|++++|.+.+..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            66666655444 455666666666666665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=1.1e-18  Score=160.61  Aligned_cols=137  Identities=14%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             cchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccC-----------Cc
Q 045366          151 IPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGL-----------NQ  218 (289)
Q Consensus       151 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~  218 (289)
                      +|..+..+++|++|++++|.+.+... ..+..+++|++|+++++-..+.++.....+++|++|++++           +.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            33444445555555555555433222 2234555555555552211112222234455666666662           33


Q ss_pred             CcccC-CC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc----ccccccc-----cCccccCCCCCCeEeCc
Q 045366          219 FSGMF-PP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS----GNNLTGS-----LQDSLSNTTNLHKLDIN  287 (289)
Q Consensus       219 l~~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~~~~~~~~~~L~~L~l~  287 (289)
                      +++.. .. ...+++|++|++..+.+++..+..+...+++|+.|+++    .|.+++.     ++..+.++++|++|+++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            33211 11 23456677777766666655555555446777777775    4566642     33445667777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=4.7e-16  Score=120.82  Aligned_cols=136  Identities=16%  Similarity=0.217  Sum_probs=108.1

Q ss_pred             cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366          130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL  209 (289)
Q Consensus       130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  209 (289)
                      .+..+.+|++|++++|.+. .++......++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3567789999999999988 4454333444999999999999864  578889999999999999986544556888999


Q ss_pred             cEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCchh---hhcCCCCCcEEEcccccccc
Q 045366          210 ISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPLD---IGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       210 ~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      ++|++++|.+...+.  .+..+++|++|++++|.++ .+|..   .+..+++|+.||+++|...+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999977665  4778889999999999987 56654   34478999999999887763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=5.9e-16  Score=120.29  Aligned_cols=134  Identities=13%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             ccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCC
Q 045366          106 EVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTL  185 (289)
Q Consensus       106 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L  185 (289)
                      .+.++.+|++|++++|.++ .+|......++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4667889999999999998 5554333344999999999999843  678889999999999999986555556889999


Q ss_pred             CEEEccCccCcccCCc--cccCCCCCcEEeccCCcCcccCCC----CCCCCCCCEEEccCCccc
Q 045366          186 QEINVNGNRLSGRIPS--TRSHVRNLISFNVGLNQFSGMFPP----INNISSLEYIFIHKNRYH  243 (289)
Q Consensus       186 ~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n~l~  243 (289)
                      +.|++++|.++ .+|.  .+..+++|+.|++++|.+...+..    +..+++|++|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999997 4555  788899999999999999876653    678889999999999876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=2.5e-18  Score=136.36  Aligned_cols=132  Identities=19%  Similarity=0.335  Sum_probs=84.0

Q ss_pred             eeEEEeccCCCCCCcCCc------cccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCC
Q 045366           64 RVIGLDLRHQSIRGFLSP------FVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNL  137 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  137 (289)
                      .++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            445555555555555444      66667777777777777764 45 6667777777777777776 566655556677


Q ss_pred             cEEEccCCcCCCCcchhccCCCCCceeeeecccccccCC-hhccCCCCCCEEEccCccCcccCC
Q 045366          138 VKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIP  200 (289)
Q Consensus       138 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~  200 (289)
                      ++|++++|.+.+ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            777777777663 33 46666677777777776664222 356666677777777766654433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=8.4e-16  Score=131.38  Aligned_cols=176  Identities=11%  Similarity=0.114  Sum_probs=118.1

Q ss_pred             ccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccc----cccCChhccCCCCC
Q 045366          110 LFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHL----KGQLPASIGNLSTL  185 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~~~~L  185 (289)
                      +++|+.+++.+ .++...+.+|.++++|+++++..|.+....+..|..+.++..+....+..    .......|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            77777777777 66645556677777777777777776655556666666666555444221    11112223333333


Q ss_pred             C--------------------------EEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEcc
Q 045366          186 Q--------------------------EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIH  238 (289)
Q Consensus       186 ~--------------------------~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~  238 (289)
                      +                          .+.+.++-...........+++|+.+++++|.++.+... |.++++|+++++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            3                          222222110000000011378999999999999988776 9999999999999


Q ss_pred             CCcccccCchhhhcCCCCCc-EEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          239 KNRYHGSLPLDIGVNLPNLR-FFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       239 ~n~l~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +| ++ .++...|.++.+|+ .+++.+ .++...+..|.+|++|+.+++++|
T Consensus       259 ~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          259 HN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             cc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence            98 65 78888888999999 999998 777666789999999999999654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=6.2e-18  Score=134.09  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=78.0

Q ss_pred             ccccccccccccccCCCCCc------cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCC
Q 045366          110 LFKLQNLTLTNNYFSGKIPT------NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLS  183 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  183 (289)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34445555555555444443      44455555555555555543 33 4455555555555555555 3444444445


Q ss_pred             CCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCC--CCCCCCCCCEEEccCCcccccCch---------hhhc
Q 045366          184 TLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPL---------DIGV  252 (289)
Q Consensus       184 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~  252 (289)
                      +|+.|++++|.+++ +| .+..+++|++|++++|.+++...  .+..+++|++|++++|.+.+.+|.         ..+.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            55555555555553 22 34455555555555555554332  245555666666666666543332         2233


Q ss_pred             CCCCCcEEEccccccc
Q 045366          253 NLPNLRFFIISGNNLT  268 (289)
Q Consensus       253 ~~~~L~~L~Ls~n~l~  268 (289)
                      .+++|+.||  ++.++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            667777765  45544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=4.1e-17  Score=150.14  Aligned_cols=128  Identities=10%  Similarity=0.127  Sum_probs=78.4

Q ss_pred             CeeEEEeccCCCCCCcCCcccc-CCCCCcEEEccCC-CCccc-CCcccccccccccccccccccCCCCCccc----cCCC
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVG-YLSFLRSINLVNN-SLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNL----SRCS  135 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~  135 (289)
                      ++++.|+++++.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5678888888877665444454 5788888888888 44432 33334468888888888888765443333    3567


Q ss_pred             CCcEEEccCCc--CCC-CcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEc
Q 045366          136 NLVKFEASNNK--LEG-EIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINV  190 (289)
Q Consensus       136 ~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  190 (289)
                      +|++|++++|.  +.. .++..+..+++|++|++.+|...+.++..+..+++|+++++
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            88888888876  221 11222345678888888776221123444444455555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=5.4e-14  Score=123.15  Aligned_cols=123  Identities=9%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             CCCceeeeecccccccCChhccCCCCCCEEEccCccCc-----ccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366          159 LKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS-----GRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL  232 (289)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L  232 (289)
                      .+|+.+.+. +.+......+|.++++|+.+.+.+|.+.     ...+.+|..+++|+.+++. +.+..+... |.++++|
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence            344444442 2233233445555555555555554432     2334455555555555555 234433333 5555556


Q ss_pred             CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC-CCCeEeC
Q 045366          233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT-NLHKLDI  286 (289)
Q Consensus       233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l  286 (289)
                      +.+.+..+ ++ .+....|.++ +|+.+++++|.+....+..|.+++ +++.|.+
T Consensus       326 ~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          326 TQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             CEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             cEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence            66555433 33 3444444455 566666665555544444455443 4444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.57  E-value=2.6e-17  Score=151.48  Aligned_cols=61  Identities=10%  Similarity=-0.038  Sum_probs=37.7

Q ss_pred             CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCc-cccCCCCCCeEeCcCC
Q 045366          229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD-SLSNTTNLHKLDINRN  289 (289)
Q Consensus       229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~N  289 (289)
                      +++|++|++++|.+++.....+..++++|++|++++|.+++.... ....+++|++|++++|
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            556777777777665444444434567777777777777544332 3445677777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=1e-13  Score=121.42  Aligned_cols=214  Identities=10%  Similarity=0.079  Sum_probs=168.8

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  143 (289)
                      +++.+++..+ +...-...|..+ +|+.+.+.. .+...-+.+|.++++|+.+++.+|.++.....+|. ..+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4677777654 665556677774 699999986 67666778899999999999999998844445565 6899999998


Q ss_pred             CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCc---
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS---  220 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~---  220 (289)
                      .+ +.......|..+++|+.+++..+ +......+|.+ .+|+.+.+. +.++.....+|..+++|+.+++.++.+.   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            54 66556788999999999999875 55455667777 789999994 4566566789999999999999888765   


Q ss_pred             --ccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          221 --GMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       221 --~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                        .+... |.++++|+.+.+.+ .++ .++...|.++.+|+.+++.++ ++......|.+| +|+.+++++|
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             ccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence              34444 89999999999984 465 788888878999999999655 665667789999 9999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=4.1e-14  Score=109.20  Aligned_cols=104  Identities=22%  Similarity=0.295  Sum_probs=56.4

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN  169 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  169 (289)
                      +.+++++|.++. +|..+  .++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456666666652 44433  245556666666655444555555555666666655555444444555555555555555


Q ss_pred             cccccCChhccCCCCCCEEEccCccCc
Q 045366          170 HLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      ++.+..+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555444444555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=5.1e-14  Score=108.65  Aligned_cols=106  Identities=16%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      +.++++++.++. +|..+.  +++++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            478888888876 455443  78999999999999888888999999999999999999666667789999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeeccccccc
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQ  174 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  174 (289)
                      .+.+..+..|..+++|++|++++|.+...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99876667799999999999999988743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=8.5e-14  Score=107.83  Aligned_cols=104  Identities=25%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecc
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKN  169 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  169 (289)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666664 3444432  55666666666666555555666666666666666665443444555556666666655


Q ss_pred             cccccCChhccCCCCCCEEEccCccCc
Q 045366          170 HLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      .+.+..+..+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555433334555555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1e-13  Score=107.38  Aligned_cols=105  Identities=14%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             EEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           66 IGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      +.++++++.+.. +|..+.  ++|++|++++|++.+..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            578999998864 565554  88999999999999888889999999999999999999655556789999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccc
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKG  173 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~  173 (289)
                      .+.+..+..|..+++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9986666669999999999999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=2.3e-14  Score=124.36  Aligned_cols=169  Identities=13%  Similarity=0.131  Sum_probs=121.6

Q ss_pred             ccccccccccccccCCCCCcc----cc-CCCCCcEEEccCCcCCCCcchhc-cCCCCCceeeeecccccccCChhc----
Q 045366          110 LFKLQNLTLTNNYFSGKIPTN----LS-RCSNLVKFEASNNKLEGEIPAEI-SNLLKFQILNIAKNHLKGQLPASI----  179 (289)
Q Consensus       110 l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----  179 (289)
                      ++.|++|++++|.++......    +. ..++|++|++++|.++......+ ..+++|++|++++|.+.+.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            468999999999987432222    22 23689999999999874333333 345789999999999975443333    


Q ss_pred             -cCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCcccC-----CCCCCCCCCCEEEccCCcccccCchh
Q 045366          180 -GNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGMF-----PPINNISSLEYIFIHKNRYHGSLPLD  249 (289)
Q Consensus       180 -~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~  249 (289)
                       ...++|++|++++|.+++.    ++..+...++|++|++++|.+.+..     ..+...++|++|++++|.+++.-...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3568999999999998743    3445577889999999999987421     12566779999999999997432222


Q ss_pred             hh---cCCCCCcEEEccccccccccCccccCC
Q 045366          250 IG---VNLPNLRFFIISGNNLTGSLQDSLSNT  278 (289)
Q Consensus       250 ~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~~  278 (289)
                      +.   ...++|++|+|++|.+++.....+..+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            22   256899999999999986655555433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=2.4e-12  Score=110.58  Aligned_cols=102  Identities=21%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             EeccCC-CCCCcCCccccCCCCCcEEEccC-CCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           68 LDLRHQ-SIRGFLSPFVGYLSFLRSINLVN-NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        68 l~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      ++++++ +++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            466666 6765 677 99999999999996 9999877788999999999999999999888888999999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeeccccc
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      .+++..+..|..++ |++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99866666666665 999999999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=1.2e-14  Score=126.00  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             CCCcEEEccCCCCcccCCcccccc-----cccccccccccccCCCCCccc-cCCCCCcEEEccCCcCCCCcchhc-----
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNL-----FKLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLEGEIPAEI-----  155 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~-----  155 (289)
                      ++|+.|++++|.++......+...     ++|++|+|++|.+.......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            556777777777764333333322     567777777776653222222 224567777777777753333333     


Q ss_pred             cCCCCCceeeeeccccccc----CChhccCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCcccCC---
Q 045366          156 SNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGMFP---  224 (289)
Q Consensus       156 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~---  224 (289)
                      ...++|++|++++|.+++.    ++..+...++|++|++++|.+++.    ++..+...++|++|++++|.++....   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2356677777777776542    333446677777777777777542    24455566677777777777763211   


Q ss_pred             --CCCCCCCCCEEEccCCccccc
Q 045366          225 --PINNISSLEYIFIHKNRYHGS  245 (289)
Q Consensus       225 --~~~~~~~L~~L~l~~n~l~~~  245 (289)
                        .+...++|++|++++|.+++.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHH
Confidence              133456777888888777643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=5.4e-12  Score=108.38  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=85.2

Q ss_pred             cEEEccCC-CCcccCCcccccccccccccccc-cccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeee
Q 045366           90 RSINLVNN-SLRAEIPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA  167 (289)
Q Consensus        90 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  167 (289)
                      ..++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 787 4777 88888999999986 88886666788889999999999999987778888899999999999


Q ss_pred             cccccccCChhccCCCCCCEEEccCccCc
Q 045366          168 KNHLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       168 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      +|++.+..+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999865555565555 999999988876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.17  E-value=1.2e-11  Score=106.59  Aligned_cols=199  Identities=10%  Similarity=0.121  Sum_probs=105.1

Q ss_pred             CeeEEEeccCCCCCC-c-------CCccccCCCCCcEEEccCCCCc---------ccCCcccccccccccccccccccCC
Q 045366           63 QRVIGLDLRHQSIRG-F-------LSPFVGYLSFLRSINLVNNSLR---------AEIPHEVGNLFKLQNLTLTNNYFSG  125 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~  125 (289)
                      .+|+.|.+......+ .       +......+++|+.|.+......         +.+...+..+++|+.|++++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456777776554432 1       1223445678888888654321         112233455677888887776311 


Q ss_pred             CCCccccCCCCCcEEEccCCcCCCCcchhcc--CCCCCceeeeec--cccccc-----CChhc--cCCCCCCEEEccCcc
Q 045366          126 KIPTNLSRCSNLVKFEASNNKLEGEIPAEIS--NLLKFQILNIAK--NHLKGQ-----LPASI--GNLSTLQEINVNGNR  194 (289)
Q Consensus       126 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~l~~n~  194 (289)
                      .++. + .+++|+.|++..+.+.......++  .+|+|++|+++.  +...+.     +...+  ..+++|+.|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            2332 3 267778888777766533333333  677777777753  111111     11112  246677777777776


Q ss_pred             CcccCCccc---cCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc
Q 045366          195 LSGRIPSTR---SHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN  266 (289)
Q Consensus       195 ~~~~~~~~~---~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  266 (289)
                      +.+..+..+   ..+++|++|+++.|.+.+.     ...+.++++|+.|++++|.+++.....+...+  ...+++++++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            654332222   2456677777777766542     11134456677777777666533333332112  3456666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.13  E-value=3.7e-11  Score=103.48  Aligned_cols=197  Identities=13%  Similarity=0.107  Sum_probs=120.6

Q ss_pred             CCCcEEEccCCCCcc-c-------CCcccccccccccccccccccC---------CCCCccccCCCCCcEEEccCCcCCC
Q 045366           87 SFLRSINLVNNSLRA-E-------IPHEVGNLFKLQNLTLTNNYFS---------GKIPTNLSRCSNLVKFEASNNKLEG  149 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~  149 (289)
                      ..++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|+++++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            457788888655442 1       1233456789999988654321         123344567789999999887311 


Q ss_pred             CcchhccCCCCCceeeeecccccccCChhcc--CCCCCCEEEccC--ccCccc-----CCccc--cCCCCCcEEeccCCc
Q 045366          150 EIPAEISNLLKFQILNIAKNHLKGQLPASIG--NLSTLQEINVNG--NRLSGR-----IPSTR--SHVRNLISFNVGLNQ  218 (289)
Q Consensus       150 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~l~~n~  218 (289)
                      .++. + .+++|+.|++..+.+.......+.  .+++|+.|+++.  +...+.     +...+  ..+++|+.|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            2233 3 378899999988877644333443  688999998853  221111     11122  247889999998888


Q ss_pred             CcccCCC----CCCCCCCCEEEccCCcccccCchhhh---cCCCCCcEEEccccccccccCccccC-CCCCCeEeCcC
Q 045366          219 FSGMFPP----INNISSLEYIFIHKNRYHGSLPLDIG---VNLPNLRFFIISGNNLTGSLQDSLSN-TTNLHKLDINR  288 (289)
Q Consensus       219 l~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l~~  288 (289)
                      +.+....    ...+++|++|+++.|.+.+.-+..+.   ..+++|+.|++++|.+++..-..+.. +  ...++++.
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~  339 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD  339 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence            7632211    23467889999988888754333332   24688999999988887554444443 2  34455554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.1e-08  Score=89.30  Aligned_cols=107  Identities=14%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             hccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCC
Q 045366          178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPN  256 (289)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  256 (289)
                      +|..+..|+.+.+..+... ....+|..++.|+.+.+. +.+..+... |.++.+|+.+.+..+ ++ .+....|.++.+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence            3455566666666543322 334556666666666664 334444443 777778888887654 44 566666667788


Q ss_pred             CcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       257 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      |+.+.+..+ ++......|.+|++|+.+++.+|
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            888888543 55444567888888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.01  E-value=8.6e-09  Score=89.97  Aligned_cols=197  Identities=13%  Similarity=0.021  Sum_probs=85.4

Q ss_pred             CccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCc-------------
Q 045366           80 SPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-------------  146 (289)
Q Consensus        80 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------  146 (289)
                      ...|..+++|+.+.+..+.. .....+|.++.+|+.+++..+ +......++.++..|+.+.+..+.             
T Consensus       155 ~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l  232 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV  232 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred             hhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence            34566677777777765432 244556666777777776554 221223334444444443332221             


Q ss_pred             --------CCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCc
Q 045366          147 --------LEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQ  218 (289)
Q Consensus       147 --------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  218 (289)
                              +.......|..+..++.+.+..+... .....|..+..++.+....+.+   ...++..+.+|+.+.+..+ 
T Consensus       233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred             ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence                    11111233445555555555443222 2222333334444333332211   1123344444444444332 


Q ss_pred             CcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeC
Q 045366          219 FSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI  286 (289)
Q Consensus       219 l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  286 (289)
                      +..+... |.++.+|+.+++..+ ++ .+....|.++.+|+.+++..+ ++......|.+|++|+.+++
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            2222222 444445555544322 22 344343434445555544433 33233344455555554444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.83  E-value=1.1e-07  Score=83.01  Aligned_cols=180  Identities=12%  Similarity=0.022  Sum_probs=119.0

Q ss_pred             cCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc---------
Q 045366          102 EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK---------  172 (289)
Q Consensus       102 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~---------  172 (289)
                      .-..+|.++++|+.+.+..+... .....|.++.+|+.+.+..+ +.......|..+..|+.+.+..+...         
T Consensus       153 i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~  230 (394)
T 4fs7_A          153 IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT  230 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred             cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence            34567999999999999766433 55677888999999998765 44344566777777777776554322         


Q ss_pred             ------------ccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCC
Q 045366          173 ------------GQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKN  240 (289)
Q Consensus       173 ------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  240 (289)
                                  ......+..+..++.+.+..+... ....++..+..++.+......+.  ...+..+.+|+.+.+..+
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--cccccccccccccccccc
Confidence                        011123344455555555544332 33445555566666555443321  112677888999988765


Q ss_pred             cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          241 RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       241 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                       ++ .++...|.++.+|+.+++.++ ++......|.+|++|+.+++..|
T Consensus       308 -i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          308 -VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             -CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             -cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence             44 677777778999999999754 66555678999999999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.83  E-value=7.8e-08  Score=83.87  Aligned_cols=127  Identities=16%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             hccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCC
Q 045366          154 EISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSL  232 (289)
Q Consensus       154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L  232 (289)
                      .|..+..|+.+.+..+... ....+|.++..|+.+.+.. .+......+|..+.+|+.+++..+ ++.+... |.++.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3455566666666543332 3456788899999999964 455456678999999999999764 5555444 9999999


Q ss_pred             CEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          233 EYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       233 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                      +++.+..+ ++ .+....|.++.+|+.+++.++...   ...+..+.+|+.+.+..
T Consensus       337 ~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          337 ERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-------
T ss_pred             CEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCC
Confidence            99999754 55 788888889999999999988643   24577888898887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=3.9e-11  Score=98.55  Aligned_cols=105  Identities=20%  Similarity=0.328  Sum_probs=65.8

Q ss_pred             ccccccccc--ccccccccC---CCCCccccCCCCCcEEEccCCcCCC--CcchhccCCCCCceeeeecccccccCChhc
Q 045366          107 VGNLFKLQN--LTLTNNYFS---GKIPTNLSRCSNLVKFEASNNKLEG--EIPAEISNLLKFQILNIAKNHLKGQLPASI  179 (289)
Q Consensus       107 ~~~l~~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  179 (289)
                      |...+.|..  ++++.|...   ..++.....+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            444445554  555666332   1111122356788888888888876  4456667788888888888888754  223


Q ss_pred             cCCC--CCCEEEccCccCcccCCc-------cccCCCCCcEEe
Q 045366          180 GNLS--TLQEINVNGNRLSGRIPS-------TRSHVRNLISFN  213 (289)
Q Consensus       180 ~~~~--~L~~L~l~~n~~~~~~~~-------~~~~~~~L~~L~  213 (289)
                      ..+.  +|++|++++|.+.+..|.       .+..+|+|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            3333  788888888888765442       355667777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.63  E-value=1.6e-06  Score=75.00  Aligned_cols=107  Identities=12%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             hccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCC
Q 045366          178 SIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPN  256 (289)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  256 (289)
                      ++..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +..+... +.++++|+.+.+.++.++ .++...|.++.+
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~  311 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCC
Confidence            3445555666665443 33233455666666776666433 3333333 677777887777777665 566666667777


Q ss_pred             CcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          257 LRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       257 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                      |+.+++..+ ++......|.+|++|+.+.+..
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            887777643 5534456677777777776643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=2.3e-09  Score=83.53  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             cccCCCCCcEEEccCC-CCccc----CCcccccccccccccccccccCCC----CCccccCCCCCcEEEccCCcCC
Q 045366           82 FVGYLSFLRSINLVNN-SLRAE----IPHEVGNLFKLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLE  148 (289)
Q Consensus        82 ~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~  148 (289)
                      .+...+.|++|+|++| .+...    +..++...++|++|+|++|.+...    +...+...++|++|++++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3444566666666666 55422    222233344555555555544311    1222233344555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=2.7e-09  Score=83.18  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=29.7

Q ss_pred             CCCCCCEEEccCccCccc----CCccccCCCCCcEEec--cCCcCccc-----CCCCCCCCCCCEEEccCCccc
Q 045366          181 NLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNV--GLNQFSGM-----FPPINNISSLEYIFIHKNRYH  243 (289)
Q Consensus       181 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~  243 (289)
                      ..+.|++|++++|.+++.    +..++...++|++|++  ++|.+...     ...+...++|++|++++|.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            334455555555554422    2333444455555555  44555321     111333456666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=1.6e-08  Score=82.97  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             cCCCCCCEEEccCccCcc--cCCccccCCCCCcEEeccCCcCcccCCC--CCCCCCCCEEEccCCcccccCch------h
Q 045366          180 GNLSTLQEINVNGNRLSG--RIPSTRSHVRNLISFNVGLNQFSGMFPP--INNISSLEYIFIHKNRYHGSLPL------D  249 (289)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~------~  249 (289)
                      .++++|+.|++++|.+++  .++..+..+++|+.|+|++|.+.+....  +..+ +|++|++++|.+.+.+|.      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            456667777777777665  3344555667777777777777654211  3333 677777777777654442      1


Q ss_pred             hhcCCCCCcEEE
Q 045366          250 IGVNLPNLRFFI  261 (289)
Q Consensus       250 ~~~~~~~L~~L~  261 (289)
                      +...+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            233567777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.38  E-value=1.1e-05  Score=69.69  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=104.3

Q ss_pred             cccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCC
Q 045366          130 NLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNL  209 (289)
Q Consensus       130 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  209 (289)
                      .+....+|+.+.+..+ +.......|..+..|+.+.+..+ +......+|.++.+|+.+.+..+ +......+|..+++|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566777776544 33234566778888888888765 44455567888889999988654 443456788889999


Q ss_pred             cEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366          210 ISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH  282 (289)
Q Consensus       210 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  282 (289)
                      +.+.+.++.++.+... |.++.+|+.+.+..+ ++ .|....|.++.+|+.+.+..+ ++......|.+++.++
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence            9999988888776665 888999999998754 54 677777778899998888654 5544456677765443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=7.3e-07  Score=68.14  Aligned_cols=83  Identities=11%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             cccccccccccccCCCCCccccCCCCCcEEEccCCc-CCCCcchhccCC----CCCceeeeeccc-ccccCChhccCCCC
Q 045366          111 FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LEGEIPAEISNL----LKFQILNIAKNH-LKGQLPASIGNLST  184 (289)
Q Consensus       111 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~  184 (289)
                      ..|+.||++++.++..--..+.++++|++|+|++|. ++..--..++.+    ++|++|++++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            345556665555543333334455555555555553 332222233332    245555555542 33322233444455


Q ss_pred             CCEEEccCc
Q 045366          185 LQEINVNGN  193 (289)
Q Consensus       185 L~~L~l~~n  193 (289)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=6.4e-07  Score=68.44  Aligned_cols=84  Identities=8%  Similarity=0.090  Sum_probs=51.7

Q ss_pred             CCCcEEEccCCCCcccCCcccccccccccccccccc-cCCCCCccccCC----CCCcEEEccCCc-CCCCcchhccCCCC
Q 045366           87 SFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNY-FSGKIPTNLSRC----SNLVKFEASNNK-LEGEIPAEISNLLK  160 (289)
Q Consensus        87 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~l~~  160 (289)
                      -.|++|+++++.+++.--..+.++++|++|+|++|. ++..--..+..+    ++|++|++++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777765444456677777777777774 442222223332    357777777764 55333345566777


Q ss_pred             Cceeeeeccc
Q 045366          161 FQILNIAKNH  170 (289)
Q Consensus       161 L~~L~l~~n~  170 (289)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.59  E-value=1.8e-05  Score=61.51  Aligned_cols=115  Identities=13%  Similarity=0.064  Sum_probs=71.8

Q ss_pred             hhccCCCCCceeeeecc-ccccc----CChhccCCCCCCEEEccCccCcccCC----ccccCCCCCcEEeccCCcCccc-
Q 045366          153 AEISNLLKFQILNIAKN-HLKGQ----LPASIGNLSTLQEINVNGNRLSGRIP----STRSHVRNLISFNVGLNQFSGM-  222 (289)
Q Consensus       153 ~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~-  222 (289)
                      ..+..-+.|++|+++++ .+.+.    +.+++..-+.|+.|+|++|.+.+...    .++..-++|++|+|++|.|... 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33455678888988875 66532    34556677888888998888875433    3344567888888888888622 


Q ss_pred             ----CCCCCCCCCCCEEEccCCc---ccccCchhhh---cCCCCCcEEEcccccc
Q 045366          223 ----FPPINNISSLEYIFIHKNR---YHGSLPLDIG---VNLPNLRFFIISGNNL  267 (289)
Q Consensus       223 ----~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~---~~~~~L~~L~Ls~n~l  267 (289)
                          ...+...+.|++|+++++.   +.+.....+.   ..-++|+.|+++.|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                1125556678888887653   2221111111   2346778888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.46  E-value=2.2e-05  Score=61.07  Aligned_cols=10  Identities=30%  Similarity=0.507  Sum_probs=4.5

Q ss_pred             CCCcEEEccC
Q 045366           87 SFLRSINLVN   96 (289)
Q Consensus        87 ~~L~~L~L~~   96 (289)
                      +.|++|+|++
T Consensus        41 ~~L~~L~L~~   50 (197)
T 1pgv_A           41 TDLKEVNINN   50 (197)
T ss_dssp             SSCCEEECTT
T ss_pred             CCccEEECCC
Confidence            3444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.00035  Score=50.56  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             cEEeccCCcCc--ccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          210 ISFNVGLNQFS--GMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       210 ~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ..++.+++.++  .++..+.  +++++|+|++|+++ .++...|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            47888888887  6554432  47899999999998 788888878899999999999775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.19  E-value=0.0006  Score=49.32  Aligned_cols=56  Identities=20%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             EEeccCCCCC-CcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccC
Q 045366           67 GLDLRHQSIR-GFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFS  124 (289)
Q Consensus        67 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  124 (289)
                      .++.++++++ ..+|..+.  ++++.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5777777776 23454333  45777777777777655566666777777777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 5e-14
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 20/277 (7%)

Query: 31  NEADRLSLLA----------MNSWNNSINLCQ--WTGVTC--GHRHQRVIGLDLRHQSIR 76
           N  D+ +LL           ++SW  + + C   W GV C    +  RV  LDL   ++ 
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 77  GF--LSPFVGYLSFLRSINLVNN-SLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSR 133
               +   +  L +L  + +    +L   IP  +  L +L  L +T+   SG IP  LS+
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 134 CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQE-INVNG 192
              LV  + S N L G +P  IS+L     +    N + G +P S G+ S L   + ++ 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 193 NRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGV 252
           NRL        +     ++F             +   S      IH  +   +  L    
Sbjct: 184 NRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 253 NLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
              NL    +  N + G+L   L+    LH L+++ N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 1/208 (0%)

Query: 41  MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100
           ++    +             + + ++ LD  + ++ G L P +  L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 101 AEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLK 160
             IP   G+  KL      +               NL   + S N       + +    K
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDK 221

Query: 161 FQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFS 220
                    +        +G    L  +++  NR+ G +P   + ++ L S NV  N   
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 221 GMFPPINNISSLEYIFIHKNRYHGSLPL 248
           G  P   N+   +      N+     PL
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 35/248 (14%), Positives = 75/248 (30%), Gaps = 14/248 (5%)

Query: 51  CQWTGVTCGHRHQRVI---------GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRA 101
           C    V C       +          LDL++  I          L  L ++ L+NN +  
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 102 EIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKF 161
             P     L KL+ L L+ N               L   E    K+   +   ++ ++  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 162 QILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221
           ++         G    +   +  L  I +    ++           +L   ++  N+ + 
Sbjct: 130 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITK 185

Query: 222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNL 281
           +        +             ++      N P+LR   ++ N L       L++   +
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYI 244

Query: 282 HKLDINRN 289
             + ++ N
Sbjct: 245 QVVYLHNN 252

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 1e-09
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           L+ L S+   NN +    P     L  L  L+L  N         L+  +NL   + +NN
Sbjct: 196 LTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           ++    P  +S L K   L +  N +    P +     T  E+N N         S  S+
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE----DISPISN 305

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           ++NL    +  N  S    P+++++ L+ +F   N+      L    NL N+ +     N
Sbjct: 306 LKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSDVSSLA---NLTNINWLSAGHN 361

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
            ++      L+N T + +L +N  
Sbjct: 362 QISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 28/180 (15%)

Query: 41  MNSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLR 100
            N  +      Q + +T       +  L L    ++      +  L+ L  ++L NN + 
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 254

Query: 101 AEIPHEVGNLFKLQNLTLTNNYFSGKIP--------------------TNLSRCSNLVKF 140
              P  +  L KL  L L  N  S   P                    + +S   NL   
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 141 EASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIP 200
               N +    P  +S+L K Q L  A N +     +S+ NL+ +  ++   N++S   P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 38/226 (16%), Positives = 66/226 (29%), Gaps = 4/226 (1%)

Query: 44  WNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEI 103
           W +S  L +                   +  +R         L  L +++L    L+   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 104 PHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQI 163
           P     L  LQ L L +N              NL       N++          L     
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 164 LNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF 223
           L + +N +    P +  +L  L  + +  N LS       + +R L    +  N +    
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269
                 + L+      +    SLP      L       ++ N+L G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 2/223 (0%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI 127
           + L    I    +        L  + L +N L          L  L+ L L++N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 128 -PTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQ 186
            P        L         L+   P     L   Q L +  N L+     +  +L  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 187 EINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSL 246
            + ++GNR+S         + +L    +  N+ + + P                    +L
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 247 PLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
           P +    L  L++  ++ N        +      L K   + +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSS 258

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 7/204 (3%)

Query: 86  LSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 145
           ++    +N    +L   +P ++        L L+ N         L   + L +      
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSH 205
           +       ++   L         ++    LP     L  L  ++V+ NRL+         
Sbjct: 66  E---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGN 265
           +  L    +  N+   + P +   +         N     LP  +   L NL   ++  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 266 NLTGSLQDSLSNTTNLHKLDINRN 289
           +L  ++      +  L    ++ N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 24/179 (13%)

Query: 132 SRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVN 191
           S+ ++ ++       L   +P ++       IL++++N L     A++   + L ++N++
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 192 GNRLSGRI---------------------PSTRSHVRNLISFNVGLNQFSGMFPPINNIS 230
              L+                        P     +  L   +V  N+ + +        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 231 SLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN 289
                   K     +LP  +    P L    ++ NNLT      L+   NL  L +  N
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 162 QILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG 221
           ++L++A   L       +  L  +  ++++ NRL    P+  + +R L       +    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQAS-DNALE 56

Query: 222 MFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG 269
               + N+  L+ + +  NR   S  +   V+ P L    + GN+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 36/231 (15%), Positives = 75/231 (32%), Gaps = 15/231 (6%)

Query: 68  LDLRHQSIRGFLSPFVGYLSFLRSINL-VNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK 126
           LDL   + +       G L     I      S   +   E  + F++Q++ L+N+     
Sbjct: 5   LDL---TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 127 -IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIA--KNHLKGQLPASIGNLS 183
            +   LS+CS L        +L   I   ++       LN++      +  L   + + S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 184 TLQEINVNGNRLSGRIPSTR-------SHVRNLISFNVGLNQFSGMFPPINNISSLEYIF 236
            L E+N++                   +  +  +S      Q S +   +    +L ++ 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 237 IHKNRYHGSLPLDIGVNLPNLRFFIISG-NNLTGSLQDSLSNTTNLHKLDI 286
           +  +    +        L  L+   +S   ++       L     L  L +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 19/241 (7%)

Query: 51  CQWTGVTCGHRHQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNL 110
           C      C       I  DL                     +  V   LR          
Sbjct: 8   CSNRVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 111 FKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH 170
             L+ + ++ N     I  ++      +                 +      +  +  ++
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 171 LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS 230
              +    +  + +LQ++ ++           R+    L   +V L         I+N +
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 231 SLEYIFIHKNRYH----GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDI 286
                    N         LP D+           IS   +       L N   L     
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 287 N 287
            
Sbjct: 233 Y 233

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 89  LRSINLVNNSLR-AEIPHEVGNLFKLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEAS 143
           ++S+++    L  A     +  L + Q + L +   +      I + L     L +    
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQ 174
           +N+L       +   L+     I K  L+  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=9.1e-38  Score=264.34  Aligned_cols=258  Identities=28%  Similarity=0.444  Sum_probs=218.0

Q ss_pred             cChHhHHHHHh----------cCCCCCCCCCCC--cccceeCCCC--CeeEEEeccCCCCCC--cCCccccCCCCCcEEE
Q 045366           30 ANEADRLSLLA----------MNSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIRG--FLSPFVGYLSFLRSIN   93 (289)
Q Consensus        30 ~~~~~~~~l~~----------~~~w~~~~~~c~--~~~~~c~~~~--~~v~~l~l~~~~~~~--~~~~~~~~l~~L~~L~   93 (289)
                      |.++|+.|+++          +++|..++++|.  |.||+|+..+  .+|+.|+|+++.+.+  .+|+.++++++|++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~   82 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY   82 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccc
Confidence            67788888876          678999999995  9999998754  379999999999987  4789999999999999


Q ss_pred             ccC-CCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccccc
Q 045366           94 LVN-NSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLK  172 (289)
Q Consensus        94 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  172 (289)
                      |++ |++.|.+|..|.++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+..++.++++++++|.+.
T Consensus        83 Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_          83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccc
Confidence            986 8999999999999999999999999999888888899999999999999998899999999999999999999999


Q ss_pred             ccCChhccCCCCC-CEEEccCccCcccCCc-----------------------cccCCCCCcEEeccCCcCcccCCCCCC
Q 045366          173 GQLPASIGNLSTL-QEINVNGNRLSGRIPS-----------------------TRSHVRNLISFNVGLNQFSGMFPPINN  228 (289)
Q Consensus       173 ~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~-----------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~  228 (289)
                      +.+|..+..+..+ +.+++++|.+++..|.                       .+..+++++.+++++|.+.+.++.+..
T Consensus       163 ~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~  242 (313)
T d1ogqa_         163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL  242 (313)
T ss_dssp             EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888888877765 7777777776554443                       344556777888888877776666777


Q ss_pred             CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      ++++++|++++|+++|.+|..+. ++++|++|+|++|+++|.+|+ ++++++|+.+++++|
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             ccccccccCccCeecccCChHHh-CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            78888888888888888887766 788888888888888888875 577788888888776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3e-30  Score=217.84  Aligned_cols=205  Identities=23%  Similarity=0.374  Sum_probs=179.4

Q ss_pred             CeeEEEeccC-CCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRH-QSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      +.++.|++++ |.+.+.+|+.++++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+..++.+++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            6899999986 789999999999999999999999999998899899999999999999999989999999999999999


Q ss_pred             ccCCcCCCCcchhccCCCCC-ceeeeecccccc-----------------------cCChhccCCCCCCEEEccCccCcc
Q 045366          142 ASNNKLEGEIPAEISNLLKF-QILNIAKNHLKG-----------------------QLPASIGNLSTLQEINVNGNRLSG  197 (289)
Q Consensus       142 l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~~~~-----------------------~~~~~~~~~~~L~~L~l~~n~~~~  197 (289)
                      +++|.+.+.+|..+..+..+ +.+++++|++.+                       ..|..+..+++++.+++++|.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999988888888887765 777777776543                       344556677889999999999986


Q ss_pred             cCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccc-cccc
Q 045366          198 RIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNN-LTGS  270 (289)
Q Consensus       198 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~  270 (289)
                      .++ .++.+++|+.|++++|+++|.+|. +.++++|++|++++|+++|.+|. .. ++.+|+.+++++|+ +.|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~-~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG-NLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST-TGGGSCGGGTCSSSEEEST
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc-cCCCCCHHHhCCCccccCC
Confidence            554 688899999999999999987776 99999999999999999999985 33 78899999999996 5654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-26  Score=191.62  Aligned_cols=219  Identities=20%  Similarity=0.207  Sum_probs=167.7

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc-CC
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS-NN  145 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n  145 (289)
                      .+++++++++. +|..+.  +.+++|+|++|+++...+.+|.++++|++|++++|.+....+..+..++.++.+... .+
T Consensus        15 ~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            34566666653 354443  567888888888886666778888888888888888876666777777888887764 45


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP  225 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  225 (289)
                      .+....+..|+.+++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|.+.++.+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            56555577788888888888888888766666777788888888888888866667788888888888888888877665


Q ss_pred             -CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          226 -INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       226 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                       +.++++|+++++++|++++..|.. +..++++++|++++|.+.+..+..|+++++|++|++++|
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhccccccchhhhhhccccccChhH-hhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence             778888888888888887544544 447888888888888888777778888888888888877

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=184.08  Aligned_cols=198  Identities=18%  Similarity=0.251  Sum_probs=171.9

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      ....+++.++++++. +|+.+.  +++++|+|++|++++..+.+|.++++|++|++++|.++ .++ .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            345567999998885 566554  67999999999999777788999999999999999998 454 3568899999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      ++|++. ..+..+..+++|++|+++++.+....+..+..+.+++++++++|.+....+..+..+++++.+++++|++++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            999997 5577888999999999999999877778888999999999999999877777888899999999999999988


Q ss_pred             CCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          223 FPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       223 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++. +..+++|++|++++|+++ .+|+.++ .+++|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCCCC
Confidence            776 888999999999999998 8998888 8999999999999765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.3e-25  Score=181.65  Aligned_cols=206  Identities=17%  Similarity=0.198  Sum_probs=184.7

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccc-ccccCCCCCccccCCCCCcEEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLT-NNYFSGKIPTNLSRCSNLVKFE  141 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  141 (289)
                      ..++.|++++|.|++..+..|..+++|++|++++|++....+..+.++..++.++.. .+.++...+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467999999999998777789999999999999999998888888889999998765 5667766688899999999999


Q ss_pred             ccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          142 ASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       142 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      +++|.+....+..+...++|+.+++.+|.+++..+..|..+++|++|++++|.+....+.++..+++|+++++++|.+.+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999987777788899999999999999997777889999999999999999998788899999999999999999998


Q ss_pred             cCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcccccccc
Q 045366          222 MFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTG  269 (289)
Q Consensus       222 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  269 (289)
                      ..+. +..++++++|++++|++. .++...+..+++|++|++++|.+..
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCCC
Confidence            8776 999999999999999998 5666666689999999999998873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.2e-25  Score=183.81  Aligned_cols=233  Identities=18%  Similarity=0.309  Sum_probs=184.4

Q ss_pred             CCCCcccceeCCC---------CCeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCccccccccccccccc
Q 045366           49 NLCQWTGVTCGHR---------HQRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLT  119 (289)
Q Consensus        49 ~~c~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  119 (289)
                      ..|.+.++.|...         .+.++.|++++|.|+...+..|..+++|++|++++|.+....|.+|.++++|++|+++
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3467777778642         2678999999999988776789999999999999999998778899999999999999


Q ss_pred             ccccCCCCCccccCCCCCcEEEccCCcCCCCcc--------------------------hhccCCCCCceeeeecccccc
Q 045366          120 NNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIP--------------------------AEISNLLKFQILNIAKNHLKG  173 (289)
Q Consensus       120 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------------~~~~~l~~L~~L~l~~n~~~~  173 (289)
                      +|+++ .+|..+  ...++.|++..|.+....+                          ..+..+++|+++++.+|.+. 
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            99998 566443  2466777777766543222                          23455677888888888776 


Q ss_pred             cCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhc
Q 045366          174 QLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGV  252 (289)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~  252 (289)
                      .+|..  ..+++++|++++|...+..+..+..++.++.|++++|.+.+..+. +.++++|++|++++|+++ .+|.++. 
T Consensus       164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~-  239 (305)
T d1xkua_         164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-  239 (305)
T ss_dssp             SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-
T ss_pred             ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc-
Confidence            34433  367889999999988878888889999999999999999988776 788899999999999997 7887765 


Q ss_pred             CCCCCcEEEccccccccccCcc------ccCCCCCCeEeCcCC
Q 045366          253 NLPNLRFFIISGNNLTGSLQDS------LSNTTNLHKLDINRN  289 (289)
Q Consensus       253 ~~~~L~~L~Ls~n~l~~~~~~~------~~~~~~L~~L~l~~N  289 (289)
                      .+++|++|++++|+|+......      ....++|+.|+|++|
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            8999999999999998433233      356778999999887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-25  Score=181.45  Aligned_cols=197  Identities=18%  Similarity=0.222  Sum_probs=172.4

Q ss_pred             CCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCcee
Q 045366           85 YLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQIL  164 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  164 (289)
                      +...+.+++.++++++ .+|..+.  +++++|+|++|.+++..+..|..+++|++|++++|+++ .++ .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccc
Confidence            4456677899999998 4676653  58999999999999655678999999999999999997 444 46789999999


Q ss_pred             eeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCccc
Q 045366          165 NIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYH  243 (289)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~  243 (289)
                      ++++|++.. .+..+..+++|+.+++++|.+....+..+..+.+++++++++|.+.+..+. +..+++++++++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            999999984 566788999999999999999877778888999999999999999988776 788899999999999998


Q ss_pred             ccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          244 GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       244 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                       .++...+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|
T Consensus       162 -~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             -ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence             566665658999999999999999 88988999999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3.9e-21  Score=160.77  Aligned_cols=214  Identities=17%  Similarity=0.230  Sum_probs=173.0

Q ss_pred             eEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccC
Q 045366           65 VIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        65 v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  144 (289)
                      .+.+|.++++++. +|..+.  +.+++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus        12 ~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3568999988885 465554  6899999999999966667899999999999999999977788899999999999999


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccc--------------------------cCChhccCCCCCCEEEccCccCccc
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKG--------------------------QLPASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------------~~~~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      |++. .+|..  ....++.|++.+|.+.+                          ..+..+..+++|+.+++++|.+. .
T Consensus        89 n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          89 NQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             SCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            9997 45543  23466667766665432                          12334566778899999998887 4


Q ss_pred             CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          199 IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                      +|..+  ++++++|++++|...+..+. +.+++.+++|++++|.+.+ ++...+.++++|++|+|++|+++ .+|..+..
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc-cccccccccccceeeeccccccc-cccccccc
Confidence            55443  57899999999998877665 8888999999999999984 44455558999999999999998 67888999


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|++|++++|
T Consensus       241 l~~L~~L~Ls~N  252 (305)
T d1xkua_         241 HKYIQVVYLHNN  252 (305)
T ss_dssp             CSSCCEEECCSS
T ss_pred             ccCCCEEECCCC
Confidence            999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1.3e-21  Score=168.46  Aligned_cols=213  Identities=22%  Similarity=0.364  Sum_probs=149.6

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC---------------
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI---------------  127 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------  127 (289)
                      ++++.|++++|.+++..  .++++++|++|++++|++.+..  .+.++++|+.|+++++.+++..               
T Consensus        66 ~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (384)
T d2omza2          66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  141 (384)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             CCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            67899999999988753  3888999999999999987533  3778888888888776543110               


Q ss_pred             ------------------------------------------------Cccc----------------------cCCCCC
Q 045366          128 ------------------------------------------------PTNL----------------------SRCSNL  137 (289)
Q Consensus       128 ------------------------------------------------~~~~----------------------~~l~~L  137 (289)
                                                                      ...+                      ..+++|
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L  221 (384)
T d2omza2         142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL  221 (384)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCC
Confidence                                                            0111                      123445


Q ss_pred             cEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccC------------------
Q 045366          138 VKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRI------------------  199 (289)
Q Consensus       138 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------  199 (289)
                      ++|++++|.+.. + ..+..+++|+.+++.+|.+.+..  .+..+++|++++++++.+.+..                  
T Consensus       222 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         222 DELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL  297 (384)
T ss_dssp             CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             CEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcccccccccccccccccc
Confidence            555555555542 2 24556677777777777766432  3566777777777777655321                  


Q ss_pred             --CccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccC
Q 045366          200 --PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSN  277 (289)
Q Consensus       200 --~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  277 (289)
                        ...+..+++++.+++++|.+++.. ++..+++|++|++++|+++ .++ .+. ++++|++|++++|++++..|  +.+
T Consensus       298 ~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~-~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         298 EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS-DVS-SLA-NLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             ccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCC-CCh-hHc-CCCCCCEEECCCCcCCCChh--hcc
Confidence              123455678888888888887653 3677889999999999987 454 444 78999999999999986544  889


Q ss_pred             CCCCCeEeCcCC
Q 045366          278 TTNLHKLDINRN  289 (289)
Q Consensus       278 ~~~L~~L~l~~N  289 (289)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.2e-21  Score=154.19  Aligned_cols=218  Identities=14%  Similarity=0.083  Sum_probs=165.9

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCC-CccccCCCCCcEEEccC-
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKI-PTNLSRCSNLVKFEASN-  144 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~-  144 (289)
                      .+++++.+++. +|+.+.  +++++|++++|+++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+.. 
T Consensus        12 ~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            56666777763 455443  57999999999998766678999999999999999887543 45688899999998864 


Q ss_pred             CcCCCCcchhccCCCCCceeeeecccccccCCh-hccCCCCCCEEEccCccCcccCCccccCC-CCCcEEeccCCcCccc
Q 045366          145 NKLEGEIPAEISNLLKFQILNIAKNHLKGQLPA-SIGNLSTLQEINVNGNRLSGRIPSTRSHV-RNLISFNVGLNQFSGM  222 (289)
Q Consensus       145 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~  222 (289)
                      |.+....+..|..+++|+++++.+|.+....+. .+..+..+..+...++.+....+..+..+ ..++.+++.+|.++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            677766678899999999999999988744332 23344555555666667775555666655 4889999999999987


Q ss_pred             CCCCCCCCCCCEE-EccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          223 FPPINNISSLEYI-FIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       223 ~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                      .......+++.++ .+++|+++ .+|...|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            7764445566555 56777887 78888777899999999999999955556788888888777643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=2.2e-20  Score=160.63  Aligned_cols=212  Identities=27%  Similarity=0.425  Sum_probs=151.8

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .++++|++++++|+..  +.+..+++|++|++++|++++. + .+.++++|++|++++|.+.+ ++ .+..+++|+.+++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-cc-ccccccccccccc
Confidence            5789999999999764  4578899999999999999854 3 38999999999999999984 43 3788999999999


Q ss_pred             cCCcCCCCcc---------------------------------------------------------------hhccCCC
Q 045366          143 SNNKLEGEIP---------------------------------------------------------------AEISNLL  159 (289)
Q Consensus       143 ~~n~~~~~~~---------------------------------------------------------------~~~~~l~  159 (289)
                      +++.+.+..+                                                               ..+..++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            8876542110                                                               1112233


Q ss_pred             ----------------------CCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCC
Q 045366          160 ----------------------KFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLN  217 (289)
Q Consensus       160 ----------------------~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  217 (289)
                                            +|++|++.+|.+.+  ++.+..+++|+.+++++|.+++..  .++.+++|++++++++
T Consensus       198 ~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGAN  273 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred             ccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccCc
Confidence                                  44444454444442  234556677777777777776432  3666778888888877


Q ss_pred             cCcccCC---------------------CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCcccc
Q 045366          218 QFSGMFP---------------------PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS  276 (289)
Q Consensus       218 ~l~~~~~---------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  276 (289)
                      .+.+..+                     .+..++++++|++++|++++ ++. + ..+++|++|++++|++++ ++ .++
T Consensus       274 ~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~~-l-~~l~~L~~L~L~~n~l~~-l~-~l~  348 (384)
T d2omza2         274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-V-SSLTKLQRLFFANNKVSD-VS-SLA  348 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-G-GGCTTCCEEECCSSCCCC-CG-GGG
T ss_pred             ccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC-Ccc-c-ccCCCCCEEECCCCCCCC-Ch-hHc
Confidence            7654321                     13455677888888888874 332 3 378999999999999884 44 588


Q ss_pred             CCCCCCeEeCcCC
Q 045366          277 NTTNLHKLDINRN  289 (289)
Q Consensus       277 ~~~~L~~L~l~~N  289 (289)
                      ++++|++|++++|
T Consensus       349 ~l~~L~~L~l~~N  361 (384)
T d2omza2         349 NLTNINWLSAGHN  361 (384)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            9999999999987

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.7e-20  Score=150.28  Aligned_cols=207  Identities=21%  Similarity=0.338  Sum_probs=163.1

Q ss_pred             eeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEcc
Q 045366           64 RVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS  143 (289)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  143 (289)
                      ++..++++.+.+.+..  .++.+.+|+.|++.+|+++. + ..+..+++|++|++++|.+.+..  .+..++++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~   93 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccc
Confidence            3445667666666543  34567889999999999984 4 35888999999999999987433  37889999999999


Q ss_pred             CCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccC
Q 045366          144 NNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMF  223 (289)
Q Consensus       144 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  223 (289)
                      +|.++ .+ ..+..+++|++++++++...+.  ..+...+.++.+.++++.+...  ..+...++|+++++++|.+.+..
T Consensus        94 ~n~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2          94 GNPLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             SCCCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG
T ss_pred             ccccc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch
Confidence            99887 33 3577899999999998877643  3466788999999998887643  34677889999999999887543


Q ss_pred             CCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcC
Q 045366          224 PPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       224 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  288 (289)
                       .+.++++|++|++++|+++ .++. + .++++|++|++++|++++ ++. ++++++|+.|++++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~-~l~~-l-~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKIS-DISP-L-ASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             -hhcccccceecccCCCccC-CChh-h-cCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence             3778899999999999997 4543 3 378999999999999984 443 89999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=3.5e-19  Score=140.71  Aligned_cols=166  Identities=20%  Similarity=0.349  Sum_probs=104.6

Q ss_pred             cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366          109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI  188 (289)
Q Consensus       109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  188 (289)
                      .+.+|++|++++|.+. .++ .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            4556666666666665 222 255566666666666666532 2 24566666666666666653 23 45666777777


Q ss_pred             EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++++|.+..  ...+..+++++.+++++|.+++.. .+..+++|+++++++|+++ .+++ +. ++++|++|++++|+++
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~-l~-~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccc-cccc-cc-CCCCCCEEECCCCCCC
Confidence            777666552  234566677777777777766422 2455667777888877776 3332 33 6778888888888777


Q ss_pred             cccCccccCCCCCCeEeCcC
Q 045366          269 GSLQDSLSNTTNLHKLDINR  288 (289)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~  288 (289)
                       .++ .+.++++|++|+|++
T Consensus       192 -~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -BCG-GGTTCTTCSEEEEEE
T ss_pred             -CCh-hhcCCCCCCEEEccC
Confidence             344 477788888888753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=9e-19  Score=140.04  Aligned_cols=186  Identities=16%  Similarity=0.315  Sum_probs=155.0

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEc
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA  142 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  142 (289)
                      .+++.+++.+++++..  +.+.++++|++|++++|.+.+..  .+.++++++++++++|.++ .++ .+..+++|+++++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccccccccccccc
Confidence            5789999999999864  35889999999999999998543  3889999999999999987 444 5788999999999


Q ss_pred             cCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCccc
Q 045366          143 SNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGM  222 (289)
Q Consensus       143 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  222 (289)
                      +++...+.  ..+...+.++.+.++.+.+...  ..+...++|+++++++|.+.+.  ..++.+++|++|++++|.++++
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC
Confidence            99987643  3466788999999998887643  3467889999999999988743  3478899999999999999874


Q ss_pred             CCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccc
Q 045366          223 FPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG  264 (289)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~  264 (289)
                       +.+.++++|++|++++|+++ .+++ + .++++|+.|++++
T Consensus       189 -~~l~~l~~L~~L~Ls~N~lt-~i~~-l-~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -SPLASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEEEE
T ss_pred             -hhhcCCCCCCEEECcCCcCC-CCcc-c-ccCCCCCEEEeeC
Confidence             44788899999999999998 4553 3 4899999999984

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=5.4e-19  Score=139.66  Aligned_cols=180  Identities=19%  Similarity=0.341  Sum_probs=137.4

Q ss_pred             eccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCC
Q 045366           69 DLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLE  148 (289)
Q Consensus        69 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  148 (289)
                      .+..+.+.+.++.  ..+..|++|++++|.++.. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence            4455555444332  2456788899999888743 2 47788899999999998874 44 3677889999999999887


Q ss_pred             CCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCC
Q 045366          149 GEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN  228 (289)
Q Consensus       149 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  228 (289)
                       .++ .+..+++|+.|++.+|.+..  ...+..++.++.+++++|.+++  +..+..+++|+++++++|.+++.. ++.+
T Consensus       104 -~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-~l~~  176 (210)
T d1h6ta2         104 -DLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-PLAG  176 (210)
T ss_dssp             -CGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-GGTT
T ss_pred             -ccc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc-cccC
Confidence             344 57888999999999888763  3457788899999999998874  345677889999999999988643 4778


Q ss_pred             CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccc
Q 045366          229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISG  264 (289)
Q Consensus       229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~  264 (289)
                      +++|++|++++|.++ .++ .+. ++++|++|+|++
T Consensus       177 l~~L~~L~Ls~N~i~-~l~-~l~-~l~~L~~L~Ls~  209 (210)
T d1h6ta2         177 LTKLQNLYLSKNHIS-DLR-ALA-GLKNLDVLELFS  209 (210)
T ss_dssp             CTTCCEEECCSSCCC-BCG-GGT-TCTTCSEEEEEE
T ss_pred             CCCCCEEECCCCCCC-CCh-hhc-CCCCCCEEEccC
Confidence            889999999999987 565 344 889999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=144.31  Aligned_cols=199  Identities=19%  Similarity=0.093  Sum_probs=152.2

Q ss_pred             CeeEEEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccc-cccCCCCCccccCCCCCcEE
Q 045366           63 QRVIGLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTN-NYFSGKIPTNLSRCSNLVKF  140 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  140 (289)
                      .++++|++++|.++...+..|.++++|++|++++|.+... .+.+|.+++.++++++.. |.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999877677899999999999999998754 456789999999999864 66776777889999999999


Q ss_pred             EccCCcCCCCcc-hhccCCCCCceeeeecccccccCChhccCCC-CCCEEEccCccCcccCCccccCCCCCcEE-eccCC
Q 045366          141 EASNNKLEGEIP-AEISNLLKFQILNIAKNHLKGQLPASIGNLS-TLQEINVNGNRLSGRIPSTRSHVRNLISF-NVGLN  217 (289)
Q Consensus       141 ~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~l~~n  217 (289)
                      ++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++++|.++...+.. ...++++.+ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhcccccccc
Confidence            999999864322 2234455566666666677755556666654 7888999999998544444 445565555 56888


Q ss_pred             cCcccCCC-CCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEcc
Q 045366          218 QFSGMFPP-INNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIIS  263 (289)
Q Consensus       218 ~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls  263 (289)
                      .++.+++. +.++++|++|++++|+++ .+|...+.++++|+.+++.
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCC
Confidence            89887665 899999999999999998 7877655566666655554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.8e-18  Score=135.50  Aligned_cols=162  Identities=22%  Similarity=0.339  Sum_probs=103.8

Q ss_pred             cccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEE
Q 045366          109 NLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEI  188 (289)
Q Consensus       109 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  188 (289)
                      .+.++++|++++|.+. .++ .+..+++|++|++++|++++..  .++.+++|++|++++|.+.. ++ .+..++.|+.+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccc
Confidence            4556666666666665 332 3555666666666666665332  26666667777776666552 22 35667777777


Q ss_pred             EccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccc
Q 045366          189 NVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      +++++.....  ..+..+++|+.+++++|.+... +.+..++++++|++.+|+++ .++ .+. ++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~-~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT-DLK-PLA-NLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc-cccccccccccccccccccc-CCc-ccc-CCCCCCEEECCCCCCC
Confidence            7776666532  3356677777777777776643 33666778888888888776 333 233 7788888888888887


Q ss_pred             cccCccccCCCCCCeE
Q 045366          269 GSLQDSLSNTTNLHKL  284 (289)
Q Consensus       269 ~~~~~~~~~~~~L~~L  284 (289)
                      + ++ .++++++|+.|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            4 43 47788888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.9e-19  Score=139.20  Aligned_cols=129  Identities=25%  Similarity=0.387  Sum_probs=82.8

Q ss_pred             cEEEccCCCCcccCCcccccccccccccccccccCCC-CCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeec
Q 045366           90 RSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAK  168 (289)
Q Consensus        90 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  168 (289)
                      +.++.++++++ .+|..+.  +++++|+|++|.|++. .+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45667777766 4555442  4667777777776542 344556666777777777766666666666666677777777


Q ss_pred             ccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcc
Q 045366          169 NHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSG  221 (289)
Q Consensus       169 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  221 (289)
                      |++....+.+|.++++|++|++++|.++...+++|..+++|+++++++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            76665555666666666666666666665555666666666666666666553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1.3e-19  Score=141.17  Aligned_cols=170  Identities=16%  Similarity=0.209  Sum_probs=127.6

Q ss_pred             EEeccCCCCCCcCCccccCCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC
Q 045366           67 GLDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN  145 (289)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  145 (289)
                      .+++++++++. +|..+.  +++++|+|++|+++.. .+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            57888888875 455553  6899999999999754 4667889999999999999999888889999999999999999


Q ss_pred             cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCC
Q 045366          146 KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPP  225 (289)
Q Consensus       146 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  225 (289)
                      ++....+..|..+++|++|++++|+++...+.+|..+++|+++++++|.+.... ....-...++.+.+..+.++...| 
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~p-  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGAP-  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCSS-
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCCC-
Confidence            999777888999999999999999999888888999999999999999886322 111111123444444455443222 


Q ss_pred             CCCCCCCCEEEccCCcc
Q 045366          226 INNISSLEYIFIHKNRY  242 (289)
Q Consensus       226 ~~~~~~L~~L~l~~n~l  242 (289)
                       ..+..++.++++.+.+
T Consensus       167 -~~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         167 -SKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             -TTTTTSBGGGSCTTTC
T ss_pred             -hhhcCCEeeecCHhhC
Confidence             1223344445555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3e-18  Score=134.18  Aligned_cols=177  Identities=23%  Similarity=0.362  Sum_probs=130.9

Q ss_pred             EeccCCCCCCcCCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcC
Q 045366           68 LDLRHQSIRGFLSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL  147 (289)
Q Consensus        68 l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  147 (289)
                      ..+..+.+++..+  ...+.++++|+++++.++. + +.+..+++|++|++++|.+++ +++ +..+++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccccccccccc
Confidence            4455555554332  2346778888888888874 3 347778888999998888874 333 78888899999988887


Q ss_pred             CCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCC
Q 045366          148 EGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN  227 (289)
Q Consensus       148 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  227 (289)
                      .. ++ .+..++.|+.|+++++.....  ..+..+++|+.+++++|.+.. + ..+..+++++++++.+|.+++.. ++.
T Consensus        97 ~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~-~l~  169 (199)
T d2omxa2          97 AD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK-PLA  169 (199)
T ss_dssp             CC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGT
T ss_pred             cc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc-ccc
Confidence            63 33 477888899999888877643  346788889999999888863 3 35778889999999999888653 477


Q ss_pred             CCCCCCEEEccCCcccccCchhhhcCCCCCcEE
Q 045366          228 NISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFF  260 (289)
Q Consensus       228 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  260 (289)
                      ++++|++|++++|+++ .++ .+. ++++|++|
T Consensus       170 ~l~~L~~L~ls~N~i~-~i~-~l~-~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVS-DIS-VLA-KLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEE
T ss_pred             CCCCCCEEECCCCCCC-CCc-ccc-CCCCCCcC
Confidence            8889999999999887 454 343 77888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=4.7e-15  Score=125.15  Aligned_cols=52  Identities=31%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEeCcCC
Q 045366          229 ISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       229 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~N  289 (289)
                      +++|++|++++|+++ .+|.    .+++|+.|++++|+++ .+|+.   +++|++|++++|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             CCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            357788888888776 5653    3567888888888777 55543   356778888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.3e-16  Score=118.90  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=70.6

Q ss_pred             ccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCc
Q 045366           83 VGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQ  162 (289)
Q Consensus        83 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  162 (289)
                      +.+...+++|+|++|+++. ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            3445556666666666653 3444555666666666666665 332 355666666666666666533333445566666


Q ss_pred             eeeeecccccccCC-hhccCCCCCCEEEccCccCcccCCc----cccCCCCCcEEe
Q 045366          163 ILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGRIPS----TRSHVRNLISFN  213 (289)
Q Consensus       163 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~  213 (289)
                      +|++++|.+..... ..+..+++|+++++++|.++. .|.    .++.+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            66666666653211 234555666666666665542 221    244455555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-17  Score=134.74  Aligned_cols=197  Identities=18%  Similarity=0.251  Sum_probs=117.1

Q ss_pred             CCCCCcEEEccCCCCccc-CCcccccccccccccccccccCCCCCccccCCCCCcEEEccCC-cCCCC-cchhccCCCCC
Q 045366           85 YLSFLRSINLVNNSLRAE-IPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGE-IPAEISNLLKF  161 (289)
Q Consensus        85 ~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L  161 (289)
                      ....|++|+++++.+... ++..+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345678888887777543 3344567788888888888776555666777778888888774 44321 12233567788


Q ss_pred             ceeeeeccc-cccc-CChhcc-CCCCCCEEEccCcc--Cccc-CCccccCCCCCcEEeccCCc-CcccCC-CCCCCCCCC
Q 045366          162 QILNIAKNH-LKGQ-LPASIG-NLSTLQEINVNGNR--LSGR-IPSTRSHVRNLISFNVGLNQ-FSGMFP-PINNISSLE  233 (289)
Q Consensus       162 ~~L~l~~n~-~~~~-~~~~~~-~~~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~~L~  233 (289)
                      ++|+++++. +++. +...+. ..+.|+.|+++++.  +++. +......+++|++|++++|. +++... .+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            888887753 3321 122222 34678888887642  3321 22233456788888887754 443322 366777888


Q ss_pred             EEEccCC-cccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCC
Q 045366          234 YIFIHKN-RYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLH  282 (289)
Q Consensus       234 ~L~l~~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  282 (289)
                      +|++++| .+++.....+. ++++|+.|+++++--.+.++.....+|+|+
T Consensus       204 ~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGG-GCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             EEECCCCCCCChHHHHHHh-cCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            8888875 45544344444 677888888877722222333334455544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.7e-15  Score=108.80  Aligned_cols=101  Identities=25%  Similarity=0.386  Sum_probs=51.3

Q ss_pred             EEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeeccc
Q 045366           91 SINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNH  170 (289)
Q Consensus        91 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  170 (289)
                      .|++++|+++ .++ .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++. ++ .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4555555554 222 2455555555555555554 444455555555555555555542 22 35555555555555555


Q ss_pred             ccccC-ChhccCCCCCCEEEccCccCc
Q 045366          171 LKGQL-PASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       171 ~~~~~-~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      +.+.. ...+..+++|+.+++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54321 133445555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.8e-15  Score=108.68  Aligned_cols=102  Identities=22%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             ccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCc
Q 045366          114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGN  193 (289)
Q Consensus       114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  193 (289)
                      |+|++++|.++ .++ .+..+++|++|++++|++. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            35666666665 444 2556666666666666665 445556666666666666666653 22 3555566666666666


Q ss_pred             cCcccC-CccccCCCCCcEEeccCCcCc
Q 045366          194 RLSGRI-PSTRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       194 ~~~~~~-~~~~~~~~~L~~L~l~~n~l~  220 (289)
                      .+.... ...++.+++|+++++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            555321 133444455555555555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.7e-16  Score=115.69  Aligned_cols=124  Identities=17%  Similarity=0.225  Sum_probs=55.3

Q ss_pred             CCCCcEEEccCCcCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEe
Q 045366          134 CSNLVKFEASNNKLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFN  213 (289)
Q Consensus       134 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  213 (289)
                      ..++++|++++|+++ .++..+..+++|+.|++++|.+...  +.+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            334444444444444 2233334444444444444444421  1234444555555555554433233334445555555


Q ss_pred             ccCCcCcccCC--CCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEE
Q 045366          214 VGLNQFSGMFP--PINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFI  261 (289)
Q Consensus       214 l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~  261 (289)
                      +++|.+..+..  .+..+++|++|++++|.++ ..+.   ..+..+|+|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            55555443322  1444555555555555554 2221   1222455666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=5.4e-17  Score=137.57  Aligned_cols=227  Identities=15%  Similarity=0.136  Sum_probs=161.6

Q ss_pred             CeeEEEeccCCCCCCc----CCccccCCCCCcEEEccCCCCccc----------CCcccccccccccccccccccCCC--
Q 045366           63 QRVIGLDLRHQSIRGF----LSPFVGYLSFLRSINLVNNSLRAE----------IPHEVGNLFKLQNLTLTNNYFSGK--  126 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~--  126 (289)
                      ..++.|++++|.+...    +...+...+.|+.++++++.....          +..++...++|++|++++|.+...  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5688999999987542    445677789999999998765421          122345578899999999988743  


Q ss_pred             --CCccccCCCCCcEEEccCCcCCCCcchh-------------ccCCCCCceeeeeccccccc----CChhccCCCCCCE
Q 045366          127 --IPTNLSRCSNLVKFEASNNKLEGEIPAE-------------ISNLLKFQILNIAKNHLKGQ----LPASIGNLSTLQE  187 (289)
Q Consensus       127 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~  187 (289)
                        +...+...++|++|++++|.+.......             ....+.|+.+++++|.+...    +...+...+.++.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              2334456789999999999875211111             13567899999999887643    2334567789999


Q ss_pred             EEccCccCccc-----CCccccCCCCCcEEeccCCcCccc-----CCCCCCCCCCCEEEccCCcccccCchhhh-----c
Q 045366          188 INVNGNRLSGR-----IPSTRSHVRNLISFNVGLNQFSGM-----FPPINNISSLEYIFIHKNRYHGSLPLDIG-----V  252 (289)
Q Consensus       188 L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~  252 (289)
                      +++++|.+...     +...+...++|+.|++++|.+...     ...+..+++|++|++++|.+.+.-...++     .
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            99999988642     334577889999999999988532     12267788999999999998744333322     1


Q ss_pred             CCCCCcEEEccccccccc----cCccc-cCCCCCCeEeCcCC
Q 045366          253 NLPNLRFFIISGNNLTGS----LQDSL-SNTTNLHKLDINRN  289 (289)
Q Consensus       253 ~~~~L~~L~Ls~n~l~~~----~~~~~-~~~~~L~~L~l~~N  289 (289)
                      ..+.|++|++++|.++..    +...+ .++++|++|++++|
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            246799999999998753    33344 36889999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=8.2e-14  Score=117.35  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             CCCCcEEeccCCcCcccCCCCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCCCCCeEe
Q 045366          206 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTTNLHKLD  285 (289)
Q Consensus       206 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  285 (289)
                      +++|++|++++|.++.++.   .+++|+.|++++|+++ .+|.    .+++|++|++++|+++ .+|+..   .+|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence            4689999999999986653   3568999999999998 6763    3578999999999998 677533   3677777


Q ss_pred             Cc
Q 045366          286 IN  287 (289)
Q Consensus       286 l~  287 (289)
                      +.
T Consensus       351 ~~  352 (353)
T d1jl5a_         351 MN  352 (353)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-16  Score=129.77  Aligned_cols=213  Identities=18%  Similarity=0.179  Sum_probs=153.4

Q ss_pred             CeeEEEeccCCCCCCc-CCccccCCCCCcEEEccCCCCcccCCccccccccccccccccc-ccCCC-CCccccCCCCCcE
Q 045366           63 QRVIGLDLRHQSIRGF-LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNN-YFSGK-IPTNLSRCSNLVK  139 (289)
Q Consensus        63 ~~v~~l~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~  139 (289)
                      .+++.+|++++.+... +...+..+++|++|+++++.+.+..+..+..+++|++|+++++ .++.. +...+..+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            6789999999887644 4556788999999999999998777788889999999999996 45421 1222356899999


Q ss_pred             EEccCCc-CCC-Ccchhcc-CCCCCceeeeeccc--cccc-CChhccCCCCCCEEEccCcc-CcccCCccccCCCCCcEE
Q 045366          140 FEASNNK-LEG-EIPAEIS-NLLKFQILNIAKNH--LKGQ-LPASIGNLSTLQEINVNGNR-LSGRIPSTRSHVRNLISF  212 (289)
Q Consensus       140 L~l~~n~-~~~-~~~~~~~-~l~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L  212 (289)
                      |+++++. ++. .+...+. ..++|+.|+++++.  +++. +......+++|++|++++|. +++.....++.+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9999864 432 1223333 35789999998753  3322 23334678999999999875 776777788999999999


Q ss_pred             eccCC-cCcccCC-CCCCCCCCCEEEccCCcccccCchhhhcCCCCCcEEEccccccccccCccccCCC
Q 045366          213 NVGLN-QFSGMFP-PINNISSLEYIFIHKNRYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNTT  279 (289)
Q Consensus       213 ~l~~n-~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  279 (289)
                      ++++| .+++... .+.++++|++|+++++ +++..-..+...+|+|+   +..+.+++..++.+++..
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSSTT
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCccc
Confidence            99996 5654332 2778899999999988 44333334444566654   567788766666565443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.4e-17  Score=141.01  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=39.7

Q ss_pred             CCCCCCEEEccCCccccc----CchhhhcCCCCCcEEEccccccccc----cCccccCCCCCCeEeCcCC
Q 045366          228 NISSLEYIFIHKNRYHGS----LPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNTTNLHKLDINRN  289 (289)
Q Consensus       228 ~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~N  289 (289)
                      ..++|++|++++|.+.+.    ++..+....+.|++|+|++|.+++.    +.+.+..+++|++|||++|
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence            334677888888777532    2223333456678888888877643    3445666778888888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=4.7e-15  Score=125.39  Aligned_cols=211  Identities=18%  Similarity=0.169  Sum_probs=152.5

Q ss_pred             CCccccCCCCCcEEEccCCCCccc----CCcccccccccccccccccccCCC----------CCccccCCCCCcEEEccC
Q 045366           79 LSPFVGYLSFLRSINLVNNSLRAE----IPHEVGNLFKLQNLTLTNNYFSGK----------IPTNLSRCSNLVKFEASN  144 (289)
Q Consensus        79 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l~~  144 (289)
                      +...+...+.+++|+|++|.+...    +...+...+.|+.++++++.....          +...+...++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344566788999999999988643    334566779999999988765421          123356678999999999


Q ss_pred             CcCCCC----cchhccCCCCCceeeeecccccccCC-------------hhccCCCCCCEEEccCccCccc----CCccc
Q 045366          145 NKLEGE----IPAEISNLLKFQILNIAKNHLKGQLP-------------ASIGNLSTLQEINVNGNRLSGR----IPSTR  203 (289)
Q Consensus       145 n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~n~~~~~----~~~~~  203 (289)
                      |.+...    +...+...++|++|++++|.+.....             ......+.|+.+.+++|.++..    +...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            998754    33445678999999999998753211             1124577899999999987633    23445


Q ss_pred             cCCCCCcEEeccCCcCccc------CCCCCCCCCCCEEEccCCcccccCch---hhhcCCCCCcEEEccccccccccC--
Q 045366          204 SHVRNLISFNVGLNQFSGM------FPPINNISSLEYIFIHKNRYHGSLPL---DIGVNLPNLRFFIISGNNLTGSLQ--  272 (289)
Q Consensus       204 ~~~~~L~~L~l~~n~l~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~--  272 (289)
                      ...++++++++++|.+...      ...+...++|+.|++++|.++..-..   ......++|++|++++|.+++...  
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            6778999999999998631      22367788999999999998633221   223478999999999999986533  


Q ss_pred             --ccccC--CCCCCeEeCcCC
Q 045366          273 --DSLSN--TTNLHKLDINRN  289 (289)
Q Consensus       273 --~~~~~--~~~L~~L~l~~N  289 (289)
                        ..+..  .+.|++||+++|
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHhhhccCCCCCEEECCCC
Confidence              33333  467999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=5.8e-16  Score=120.63  Aligned_cols=111  Identities=19%  Similarity=0.342  Sum_probs=49.2

Q ss_pred             hhccCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCCCC
Q 045366          153 AEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSL  232 (289)
Q Consensus       153 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L  232 (289)
                      ..+..+++|++|++++|++.. ++ .+..+++|+.|++++|.++ .++.....+++|+.|++++|.++.+ +.+..+++|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L  117 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNL  117 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHS
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccc
Confidence            344444444444444444442 22 2444444555555544444 2333333333455555555544432 123344455


Q ss_pred             CEEEccCCcccccCch-hhhcCCCCCcEEEccccccc
Q 045366          233 EYIFIHKNRYHGSLPL-DIGVNLPNLRFFIISGNNLT  268 (289)
Q Consensus       233 ~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~  268 (289)
                      ++|++++|+++ .++. ..+..+++|+.|++++|.+.
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            55555555554 2221 22234555555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1.1e-15  Score=119.15  Aligned_cols=115  Identities=19%  Similarity=0.317  Sum_probs=85.0

Q ss_pred             CCccccCCCCCcEEEccCCCCcccCCcccccccccccccccccccCCCCCccccCCCCCcEEEccCCcCCCCcchhccCC
Q 045366           79 LSPFVGYLSFLRSINLVNNSLRAEIPHEVGNLFKLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLEGEIPAEISNL  158 (289)
Q Consensus        79 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  158 (289)
                      ++..+..+++|++|++++|+++. ++ .+.++++|++|++++|.++ .+|.....+++|++|++++|.++. + ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            44567778888888888888874 33 4788888888888888887 566555555678888888888873 3 346777


Q ss_pred             CCCceeeeecccccccCC-hhccCCCCCCEEEccCccCccc
Q 045366          159 LKFQILNIAKNHLKGQLP-ASIGNLSTLQEINVNGNRLSGR  198 (289)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~  198 (289)
                      ++|++|++++|++..... ..+..+++|+.|++++|.+...
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            888888888888874322 4577788888888888876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=97.20  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             chhccCCCCCceeeeeccc-ccccCChhccCCCCCCEEEccCccCcccCCccccCCCCCcEEeccCCcCcccCCCCCCCC
Q 045366          152 PAEISNLLKFQILNIAKNH-LKGQLPASIGNLSTLQEINVNGNRLSGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNIS  230 (289)
Q Consensus       152 ~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  230 (289)
                      |..+..+++|++|++.+|+ ++...+.+|.++++|+.|++++|+++...+.+|..+++|++|+|++|.++.+.+......
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence            3333344444444443332 333333344444444444444444443334444445555555555555544433311222


Q ss_pred             CCCEEEccCCcc
Q 045366          231 SLEYIFIHKNRY  242 (289)
Q Consensus       231 ~L~~L~l~~n~l  242 (289)
                      ++++|++++|.+
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            455555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-14  Score=124.78  Aligned_cols=106  Identities=16%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             CCCCEEEccCccCcccCC----ccccCCCCCcEEeccCCcCccc-----CCCC-CCCCCCCEEEccCCccccc----Cch
Q 045366          183 STLQEINVNGNRLSGRIP----STRSHVRNLISFNVGLNQFSGM-----FPPI-NNISSLEYIFIHKNRYHGS----LPL  248 (289)
Q Consensus       183 ~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~-----~~~~-~~~~~L~~L~l~~n~l~~~----~~~  248 (289)
                      ..|+.++++++.++....    ..+...++|++|++++|.+...     ...+ ...+.|++|++++|.+++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            456777777776653322    2234557899999999998632     1112 3457899999999999743    233


Q ss_pred             hhhcCCCCCcEEEccccccccccCcc----cc-CCCCCCeEeCcCC
Q 045366          249 DIGVNLPNLRFFIISGNNLTGSLQDS----LS-NTTNLHKLDINRN  289 (289)
Q Consensus       249 ~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~-~~~~L~~L~l~~N  289 (289)
                      .+. ..++|++|++++|++++.....    +. +.+.|+.|++++|
T Consensus       392 ~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         392 TLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             HHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence            333 6799999999999998644333    32 4457999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.4e-12  Score=94.38  Aligned_cols=105  Identities=18%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             ccccccccccCCCCCccccCCCCCcEEEccCC-cCCCCcchhccCCCCCceeeeecccccccCChhccCCCCCCEEEccC
Q 045366          114 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN-KLEGEIPAEISNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNG  192 (289)
Q Consensus       114 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  192 (289)
                      +.++.+++.+. ..|..+..+++|++|++.+| .++...+..|..+++|+.|++++|+++...+.+|..+++|++|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44555555554 44555555666666666544 35544445566666666666666666655556666666666666666


Q ss_pred             ccCcccCCccccCCCCCcEEeccCCcCc
Q 045366          193 NRLSGRIPSTRSHVRNLISFNVGLNQFS  220 (289)
Q Consensus       193 n~~~~~~~~~~~~~~~L~~L~l~~n~l~  220 (289)
                      |+++. +|........|+.|++++|.+.
T Consensus        90 N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCcc-cChhhhccccccccccCCCccc
Confidence            66663 3333223335666676666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.1e-10  Score=82.37  Aligned_cols=84  Identities=20%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             hccCCCCCCEEEccCccCccc--CCccccCCCCCcEEeccCCcCcccCCC-CCCCCCCCEEEccCCcccccCch------
Q 045366          178 SIGNLSTLQEINVNGNRLSGR--IPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHKNRYHGSLPL------  248 (289)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~------  248 (289)
                      .+..+++|++|++++|+++..  ++..+..+++|+.|++++|.++.+... .....++++|++++|.+......      
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            334566777777777776632  123445566666666666666654332 22223566666666666533221      


Q ss_pred             hhhcCCCCCcEEE
Q 045366          249 DIGVNLPNLRFFI  261 (289)
Q Consensus       249 ~~~~~~~~L~~L~  261 (289)
                      .++..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1233556666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-09  Score=80.04  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=16.3

Q ss_pred             cCCCCCceeeeecccccccCChhccCCCCCCEEEccCccCc
Q 045366          156 SNLLKFQILNIAKNHLKGQLPASIGNLSTLQEINVNGNRLS  196 (289)
Q Consensus       156 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (289)
                      ..+++|+.|++++|.+....+-.+....+|+++++++|.+.
T Consensus        88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34444444444444444222212222233444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=6.4e-07  Score=66.52  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             cCCCCCceeeeecc-ccccc----CChhccCCCCCCEEEccCccCcccC----CccccCCCCCcEEeccCCcCccc----
Q 045366          156 SNLLKFQILNIAKN-HLKGQ----LPASIGNLSTLQEINVNGNRLSGRI----PSTRSHVRNLISFNVGLNQFSGM----  222 (289)
Q Consensus       156 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----  222 (289)
                      .+.+.|++|+++++ .+...    +...+...+.|++|++++|.+....    ...+...+.|++|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35678888888764 34422    2345667778888888888776432    23344567788888888877531    


Q ss_pred             -CCCCCCCCCCCEEEccCCcccccCch----hh---hcCCCCCcEEEccccc
Q 045366          223 -FPPINNISSLEYIFIHKNRYHGSLPL----DI---GVNLPNLRFFIISGNN  266 (289)
Q Consensus       223 -~~~~~~~~~L~~L~l~~n~l~~~~~~----~~---~~~~~~L~~L~Ls~n~  266 (289)
                       ...+...++|++|++++|.+. .+..    .+   ...-++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             112566677888888777654 2211    11   1234677777776653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=1.2e-06  Score=64.99  Aligned_cols=9  Identities=22%  Similarity=0.423  Sum_probs=3.8

Q ss_pred             CCCcEEEcc
Q 045366           87 SFLRSINLV   95 (289)
Q Consensus        87 ~~L~~L~L~   95 (289)
                      +.|++|+|+
T Consensus        15 ~~L~~L~L~   23 (167)
T d1pgva_          15 TDLKEVNIN   23 (167)
T ss_dssp             SSCCEEECT
T ss_pred             CCCcEEEeC
Confidence            334444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=1e-05  Score=59.64  Aligned_cols=10  Identities=40%  Similarity=0.434  Sum_probs=4.2

Q ss_pred             CCCcEEEccC
Q 045366           87 SFLRSINLVN   96 (289)
Q Consensus        87 ~~L~~L~L~~   96 (289)
                      +.|++|++++
T Consensus        17 ~~L~~L~L~~   26 (166)
T d1io0a_          17 PDLEEVNLNN   26 (166)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCcEEEcCC
Confidence            3444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=1.2e-05  Score=59.17  Aligned_cols=112  Identities=15%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             ccCCCCCceeeeec-cccccc----CChhccCCCCCCEEEccCccCccc----CCccccCCCCCcEEeccCCcCccc---
Q 045366          155 ISNLLKFQILNIAK-NHLKGQ----LPASIGNLSTLQEINVNGNRLSGR----IPSTRSHVRNLISFNVGLNQFSGM---  222 (289)
Q Consensus       155 ~~~l~~L~~L~l~~-n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~---  222 (289)
                      ..+.++|++|++++ +.++..    +..++...+.|++|++++|.++..    +...+...+.++.+++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34567788888876 344422    233455677788888888776533    223444556777777777766421   


Q ss_pred             --CCCCCCCCCCCEEEcc--CCcccccCchhh---hcCCCCCcEEEccccc
Q 045366          223 --FPPINNISSLEYIFIH--KNRYHGSLPLDI---GVNLPNLRFFIISGNN  266 (289)
Q Consensus       223 --~~~~~~~~~L~~L~l~--~n~l~~~~~~~~---~~~~~~L~~L~Ls~n~  266 (289)
                        ...+...++++.++++  +|.+.+.....+   ....++|+.|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              1124455666665443  444432111111   1245667777666554