Citrus Sinensis ID: 045370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPALQ
Secondary Structure (PSIPRED)
cEEcccccEEEEEcccccEEEEEcccccEEEcEEccccccccEEEEcccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEcccccccccccccccEEEEEEccccEEEEcccccEEEEEccccEEEcccccccccEEEEEEcccccEEEEEccccccccEEEcccccccccEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEEccccEEEccccHHHHHHHHHHHHHcccccEEEEccccEEEEEEcccccHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEcccccEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccEEEEEEcccccEEEEEccccccEEEEEEEcccEEEcccccEEEEEcccccHHHccEEEEccccccccEEEEEEcccccEEEEcccccEEEEEHHHHccHHHHcccccccEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mvfsddgfllisgsddgmICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVwdlgsgiliqtqvyPQAVTAiafhpgeqllfagsidgrifvsplkfllledhfivgedqhsvlkghngsITALAFSAShlisasedktvclwDVTRRVsirrfnhkkgvVTNLVVIRQSSLLSEVSNCQRKlkkdrmpslekypqlnsLSMEMVILLQSCffnkddqcsiniRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILwykeidpvstqrrkkrkietpalq
Flexible Loop (DISEMBL)
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAShlisasedktvclWDVTRRVsirrfnhkkgvvtnlvvirqssllsevSNCQrklkkdrmpslekypqlNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWykeidpvstqrrkkrkietpalq
Low Complexity Region (SEG)
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMelrslrsllhyslehKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPALQ
Disordered region (IsUnstruct)
******GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV********************LNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLF*******************************MTKHVMEINKHLQSRLLDLMQCRILWYKEID******************
Disordered Region (DISOPRED)
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGT*AAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYK**************I******
Disordered Region (DISEMBL)
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPV****************
Disordered Region (DISPRO)
*VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPV*********I******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPALQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q68EI0	431	WD repeat-containing prot	yes	no	0.534	0.433	0.315	7e-15
Q9BV38	432	WD repeat-containing prot	yes	no	0.588	0.476	0.322	9e-13
Q4VBE8	431	WD repeat-containing prot	yes	no	0.531	0.431	0.3	5e-12
Q499N3	431	WD repeat-containing prot	yes	no	0.554	0.450	0.276	8e-12
Q3SZD4	432	WD repeat-containing prot	yes	no	0.554	0.449	0.271	4e-11
Q7ZVF0	416	POC1 centriolar protein h	no	no	0.485	0.408	0.305	2e-10
Q10272	446	Pre-rRNA-processing prote	yes	no	0.508	0.399	0.246	6e-10
Q6FLI3	579	CCR4-associated factor 4	yes	no	0.437	0.264	0.287	9e-10
F6ZT52	470	POC1 centriolar protein h	no	no	0.522	0.389	0.259	1e-09
P78706	604	Transcriptional repressor	N/A	no	0.465	0.269	0.268	2e-09

>sp|Q68EI0|WDR18_DANRE WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F+DD    +SG  D +  +W+++ ++           QLD      E R +  L  +SL 
Sbjct: 129 FTDDSSHFVSGGKDNLAFIWNLSSVV-----------QLDSSRTP-EPRHI--LSRHSLP 174

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF 122
                 GL+   G      ++SLD T KVW++ SG ++ + ++   + ++ F P E  LF
Sbjct: 175 ITDIHCGLM---GPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLF 231

Query: 123 AGSIDGRIF-VSPLKFLLLEDH-FIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDK 178
            G  DG IF VS     L  D  F    + + V KGH   +T L+ S   + L+S S D+
Sbjct: 232 CGGSDGNIFQVSLCSTSLSRDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDE 291

Query: 179 TVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207
           TV +WDV  +  I   NH +G VTN  +I
Sbjct: 292 TVRMWDVQSKQCIWTINH-RGPVTNAAII 319

Involved in left-right determination through controlling the correct clustering and migration of dorsal forerunner cells (DFCs) and Kupffer's vesicle formation.
Danio rerio (taxid: 7955)

>sp|Q9BV38|WDR18_HUMAN WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 105/242 (43%), Gaps = 36/242 (14%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F+ D    ISG  D ++ VWS+  +L           Q D   I           H    
Sbjct: 129 FTGDSSHFISGGKDCLVLVWSLCSVL-----------QADPSRIPAPR-------HVWSH 170

Query: 63  HKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL 121
           H   +T L    GG    V+ SSLD T K+W++ SG L+ + ++  ++ A+     E  +
Sbjct: 171 HALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHM 230

Query: 122 FAGSIDGRIFVSPLKFLLL---EDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASE 176
           F G  +G IF   L F      E  F   +D   V KGH   +T L+ S   S L+S S 
Sbjct: 231 FCGGSEGSIFQVDL-FTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSH 289

Query: 177 DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQ 236
           D+TV LWDV  +  IR     KG VTN  +     LL+ VS     L  D  PSL   P 
Sbjct: 290 DETVRLWDVQSKQCIRTVA-LKGPVTNAAI-----LLAPVS----MLSSDFRPSL-PLPH 338

Query: 237 LN 238
            N
Sbjct: 339 FN 340

May play a role during development.

Homo sapiens (taxid: 9606)

>sp|Q4VBE8|WDR18_MOUSE WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 24/210 (11%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F+ DG   +S   D +   WS+  +L+        S  L  R             H   +
Sbjct: 129 FTGDGSHFVSAGKDCLALAWSLCSVLQADP-----SRILAPR-------------HVWSQ 170

Query: 63  HKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL 121
           H   +T L    GG    V+ +SLD T K+W + SG L+ + ++   +T++     E  +
Sbjct: 171 HTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHI 230

Query: 122 FAGSIDGRIF-VSPLKFLLLEDH-FIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
           F G  DG IF V    +  L +H F   ++   V KGH   +T L+ S   S L+S S D
Sbjct: 231 FCGGSDGSIFQVDLCSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHD 290

Query: 178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 207
           ++V LWDV  +  +R     KG VTN  +I
Sbjct: 291 ESVRLWDVKSKQCLRTVT-LKGPVTNAAII 319

May play a role during development.

Mus musculus (taxid: 10090)

>sp|Q499N3|WDR18_RAT WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 23/217 (10%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F+ DG   +S   D ++  WS+  +L+        S  L  R             H   +
Sbjct: 129 FTGDGSHFVSAGKDCLVLAWSLCSVLQADP-----SRILAPR-------------HVWSQ 170

Query: 63  HKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL 121
           H   +T L    GG    V+ +SLD T K+W + SG L+ + ++   +T++     E  +
Sbjct: 171 HTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYI 230

Query: 122 FAGSIDGRIFVSPL--KFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
           F G  DG IF   L  +    E  F   ++   V KGH   +T L+ S   S L+S S D
Sbjct: 231 FCGGSDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHD 290

Query: 178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS 214
           ++V LWDV  +  +R    K  V    + +   S+L+
Sbjct: 291 ESVRLWDVKSKQCVRTVPLKGPVTNAAITLAPPSMLN 327

May play a role during development.

Rattus norvegicus (taxid: 10116)

>sp|Q3SZD4|WDR18_BOVIN WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 23/217 (10%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F+ D    ISG  D ++  WS+  +L                  + +     +  H    
Sbjct: 129 FTGDSSHFISGGKDCLVLAWSLCSVL------------------QADPSRTPAPRHVWSR 170

Query: 63  HKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL 121
           H   +T L    GG    V+ +SLD T K+W++ SG L+ + ++   + A+     E  +
Sbjct: 171 HTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYM 230

Query: 122 FAGSIDGRIFVSPLKFLL--LEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
           F G  DG IF   L       E  F   ++   V +GH   +T L+ S   S L+S S D
Sbjct: 231 FCGGSDGSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHD 290

Query: 178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS 214
           +TV LWDV  +  +R    K  V    +++   S+LS
Sbjct: 291 ETVRLWDVQSQQCLRTVTLKGPVTNACIMLAPVSMLS 327

May play a role during development.

Bos taurus (taxid: 9913)

>sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 33/203 (16%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL----------------DQR 44
           + FS DG  L++ SDD  I +WS+ R  K    L  H++ +                D R
Sbjct: 108 VCFSADGQSLLTASDDQSIKLWSVHR-QKIICTLREHNNWVRCARFSPDGQLMVSVSDDR 166

Query: 45  LIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQ-TQ 103
            +++   S R L+H   E     +  +     +T   ++S D T +VWD+ +  L+Q  Q
Sbjct: 167 TVKLWDASSRQLIHTFCE-PGGYSSYVDFHPSSTCIATASSDNTVRVWDIRTHTLLQHYQ 225

Query: 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL-LLEDHFIVGEDQHSVLKGHNGSIT 162
           V+  AV A++FHP    L   S D     S LK L LLE   +        L GH GS +
Sbjct: 226 VHSAAVNALSFHPSGNHLLTASSD-----STLKILDLLEGRLLY------TLHGHQGSAS 274

Query: 163 ALAFSAS--HLISASEDKTVCLW 183
            ++FS S     SA  D+ V +W
Sbjct: 275 CVSFSRSGDQFASAGSDQQVMVW 297

Danio rerio (taxid: 7955)

>sp|Q10272|IPI3_SCHPO Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=crb3 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 45/223 (20%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           FS+DG +L + S+DG +  W ++ L+ Q S              E    S++++ H+S  
Sbjct: 126 FSNDGMVLFTASNDGDVFAWLISTLVDQNSTF------------ETSNSSVKAISHFSGH 173

Query: 63  HKSSVT---GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
            +S V+   G   I  G  +  ++S D T ++WD+ +G L+ T   P   + +   P E+
Sbjct: 174 KRSIVSMEIGPGPIVSGRLY--TASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSER 231

Query: 120 LLFAGSIDGRIFV------SPLKFLLLEDHFIVGEDQHSVLKGHNG-------------- 159
           +++ G+  G I++      S     + E   +   D  ++     G              
Sbjct: 232 VVYVGNEKGIIWIPLYTGSSTFSNNVKEKKRVTSVDNTTIPNAIGGMGRVVDYNDSRESS 291

Query: 160 ------SITAL--AFSASHLISASEDKTVCLWDVTRRVSIRRF 194
                  IT L  +F AS LIS  +D  V +WD   R  +RR 
Sbjct: 292 IISCQSPITTLTVSFDASLLISGDKDGNVLVWDSVSRQVLRRL 334

Involved in the processing of ITS2 sequences from 35S pre-rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FLI3|CAF4_CANGA CCR4-associated factor 4 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAF4 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 49/202 (24%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           F DD  LL S   D  + VW +  ++ +     + +D L               L     
Sbjct: 331 FIDDTRLLASAGKDASVKVWDVDNIVDKDG---NANDNL--------------CLATFDG 373

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-------QVYPQAVTAIAFH 115
           HK SVT L T        VS S D T + WDLGSG  IQ+       ++ PQ+V+ +   
Sbjct: 374 HKDSVTALATTGNA---IVSGSNDKTLRHWDLGSGKCIQSIDLTIALKMVPQSVSKLDIT 430

Query: 116 PG------------EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163
           P             +  L  G+ DG +++  L+        +VG      L+GH G IT+
Sbjct: 431 PSFNTPLIGGADCIDNALVTGTKDGIVYLWDLRI-----GRVVGS-----LEGHRGPITS 480

Query: 164 LAFSASHLISASEDKTVCLWDV 185
           L +  S LI+ S DK+  +WD+
Sbjct: 481 LKYMGSELITGSMDKSTRIWDL 502

Involved in mitochondrial fission. Has a partially redundant function to MDV1 in acting as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 33/216 (15%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTR------LLKQTSELMHHSDQLDQRLIEMELRSLRSL 56
           FS DG   I+ SDD  I  W++ R      L + T+ +       D RLI       +++
Sbjct: 110 FSSDGHTFITASDDKSIKAWNLHRQRFLYSLTEHTNWVRCARFSPDGRLI-ASCSDDKTV 168

Query: 57  LHYSLEHKSSVTGLLTISGGTTF---------FVSSSLDATCKVWDLGSGILIQ-TQVYP 106
             + + ++  +   +   G + +           S+ +D+T KVWD+ +  L+Q  QV+ 
Sbjct: 169 RIWDITNRLCINTFVDYKGHSNYVDFNPMGTCVASAGVDSTVKVWDIRTNKLLQHYQVHN 228

Query: 107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
             V +++FHP    L   S DG + +      LLE   I        L GH G + ++AF
Sbjct: 229 AGVNSLSFHPSGNYLLTASNDGTVKI----LDLLEGRLIY------TLHGHQGPVLSVAF 278

Query: 167 SAS--HLISASEDKTVCLWDVTRRVSIRRFNHKKGV 200
           S S     S + D  V +W    + +  ++N K+ V
Sbjct: 279 SKSGDQFASGATDAQVLVW----KTNFDKYNIKEIV 310

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Xenopus tropicalis (taxid: 8364)

>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 38/201 (18%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + FS DG  L +G++D +I VW                        +++ R++R+  H  
Sbjct: 350 VCFSPDGKYLATGAEDKLIRVW------------------------DIQSRTIRNTFH-- 383

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
             H+  +  L     G T   S S D T ++WD+ +G           VT +A  P +Q 
Sbjct: 384 -GHEQDIYSLDFSRDGRTI-ASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQF 441

Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDK 178
           + AGS+D  + V  ++  L E   + G D      GH  S+ ++AFS    +L+S S DK
Sbjct: 442 VAAGSLDKSVRVWDMRGYLAER--LEGPD------GHKDSVYSVAFSPDGRNLVSGSLDK 493

Query: 179 TVCLWDVTRRVSIRRFNHKKG 199
           T+ +W+++    I      KG
Sbjct: 494 TIKMWELSAPRGIPSSAPPKG 514

Represses transcription by RNA polymerase II. May be involved at several stages of conidiation and other growth and development processes. Appears to regulate genes that are expressed in asexual and sexual spore pathways.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
255540289	471	WD-repeat protein, putative [Ricinus com	0.931	0.692	0.538	4e-84
147856241	503	hypothetical protein VITISV_026009 [Viti	0.991	0.689	0.512	4e-77
359491543	476	PREDICTED: WD repeat-containing protein	0.942	0.693	0.515	9e-76
224136101	401	predicted protein [Populus trichocarpa]	0.754	0.658	0.551	2e-70
449469775	473	PREDICTED: WD repeat-containing protein	0.877	0.649	0.449	1e-62
357477145	499	WD repeat-containing protein [Medicago t	0.945	0.663	0.432	6e-61
449503714	461	PREDICTED: WD repeat-containing protein	0.842	0.639	0.440	2e-58
302785061	466	hypothetical protein SELMODRAFT_442453 [	0.774	0.581	0.362	3e-38
302807963	479	hypothetical protein SELMODRAFT_122696 [	0.762	0.557	0.355	1e-36
357438791	393	Pre-rRNA-processing protein IPI3 [Medica	0.748	0.666	0.327	5e-32

>gi|255540289|ref|XP_002511209.1| WD-repeat protein, putative [Ricinus communis] gi|223550324|gb|EEF51811.1| WD-repeat protein, putative [Ricinus communis]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 188/349 (53%), Positives = 238/349 (68%), Gaps = 23/349 (6%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEME-LRSLRSLLHY 59
           MVFS+D  LLISGSDDG+IC+WSM  LL                  +ME   S  SLLHY
Sbjct: 133 MVFSNDDSLLISGSDDGIICMWSMISLL------------------DMENSGSSSSLLHY 174

Query: 60  SLEHKSSVTGLLTISGGT-TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE 118
           S EHKSS++GLLT SG + + F+SSSLDATCK WDL SG  IQ+Q YP A+TAI  HP +
Sbjct: 175 SSEHKSSISGLLTTSGNSNSTFISSSLDATCKAWDLVSGEPIQSQEYPLAITAIILHPVD 234

Query: 119 QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDK 178
           Q LFAG IDGRIFVS L   L++D  ++ ED   VL+GH GSITAL FS   LISASED 
Sbjct: 235 QFLFAGCIDGRIFVSMLNVGLVDDPLVIAEDPLVVLEGHKGSITALTFSTLGLISASEDC 294

Query: 179 TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLN 238
           T+CLWD    V+I+RFN+ KG VTN+VVI+ S LL   S+ QR   +  +  L+K    N
Sbjct: 295 TICLWDAVSWVAIQRFNYHKGAVTNVVVIQHSLLLPSSSH-QRVPNRLCVSPLDKCQPPN 353

Query: 239 SLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTW 298
           S SM    L ++CF   D+  S+N+  T SL + + E+++E TPAA+QMKA+ ++ QR W
Sbjct: 354 S-SMGTTTLRRTCFSLDDNYNSLNV-GTISLERQIFEMEEEHTPAALQMKAETSIVQRMW 411

Query: 299 ASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETP 347
           A++MTKHVME+NKHLQSRLLDLMQ R+LW  E +  + +++KK KIETP
Sbjct: 412 ATRMTKHVMEMNKHLQSRLLDLMQIRLLWNTEDNESNRRKKKKLKIETP 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856241|emb|CAN81788.1| hypothetical protein VITISV_026009 [Vitis vinifera]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 185/361 (51%), Positives = 238/361 (65%), Gaps = 14/361 (3%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTR------LLKQTSELMHHSD---QLDQRLIEM-EL 50
           MVFSDD  LLISGSDDGMI VWSM        L  +  E++H  +    LD  L+++ + 
Sbjct: 135 MVFSDDDSLLISGSDDGMIRVWSMISKNKRFCLFLEKFEMIHFCELLINLDGSLLDIADC 194

Query: 51  RSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL-DATCKVWDLGSGILIQTQVYPQAV 109
               SL H  LEH SS+TGLL+ISG ++  + SS  D TCKVWDL  G L++T+V+P A+
Sbjct: 195 GRFPSLFHSLLEHTSSITGLLSISGSSSPVLVSSSLDGTCKVWDLIRGRLLRTRVFPTAI 254

Query: 110 TAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS 169
           TAI   PGEQLLF+GS DGRIFVS L   L+ D F V ED+  VL GHN SITALAFS  
Sbjct: 255 TAIVLDPGEQLLFSGSADGRIFVSMLDTGLVVDPFKVPEDRPIVLNGHNRSITALAFSRL 314

Query: 170 HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP 229
            L+SAS D    LWDV   V IRRFNH KG +TN+VVI +SSLLS V+N QR   + R+ 
Sbjct: 315 GLVSASRDCAAHLWDVASGVIIRRFNHPKGAITNMVVIPKSSLLS-VTNHQRFSNQFRVS 373

Query: 230 SLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKA 289
            L+KYPQ  + SM M+ LL  C  ++    +I  + T SL Q + +L+QE TP A+QMK 
Sbjct: 374 LLDKYPQPGNSSMGMITLLPLCCSHRVHLPTIGFQSTVSLNQQILDLEQECTPGAIQMKL 433

Query: 290 DVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPAL 349
           + ++  R WA++MTKHVME+NKHLQSRLLDLMQ R+L     D  + ++RK+  +E+  +
Sbjct: 434 ETSIENRMWAARMTKHVMEMNKHLQSRLLDLMQNRLLL--SADSTAARKRKRAMLESSRI 491

Query: 350 Q 350
           Q
Sbjct: 492 Q 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491543|ref|XP_002279752.2| PREDICTED: WD repeat-containing protein 18-like [Vitis vinifera]

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 181/351 (51%), Positives = 227/351 (64%), Gaps = 21/351 (5%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           MVFSDD  LLISGSDDGMI VWSM  LL                    +     SL H  
Sbjct: 135 MVFSDDDSLLISGSDDGMIRVWSMISLLDIA-----------------DCGRFPSLFHSL 177

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSL-DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
           LEH SS+TGLL+ISG ++  + SS  D TCKVWDL  G L++T+V+P A+TAI   PGEQ
Sbjct: 178 LEHTSSITGLLSISGSSSPVLVSSSLDGTCKVWDLIRGRLLRTRVFPTAITAIVLDPGEQ 237

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKT 179
           LLF+GS DGRIFVS L   L+ D F V ED+  VL GHN SITALAFS   L+SAS D  
Sbjct: 238 LLFSGSADGRIFVSMLDTGLVVDPFKVPEDRPIVLNGHNRSITALAFSRLGLVSASRDCA 297

Query: 180 VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNS 239
             LWDV   V IRRFNH KG +TN+VVI +SSLLS V+N QR   + R+  L+KYPQ  +
Sbjct: 298 AHLWDVASGVIIRRFNHPKGAITNMVVIPKSSLLS-VTNHQRFSNQFRVSLLDKYPQPGN 356

Query: 240 LSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWA 299
            SM M+ LL  C  ++    +I  + T SL Q + +L+QE TP A+QMK + ++  R WA
Sbjct: 357 SSMGMITLLPLCCSHRVHLPTIGFQSTVSLNQQILDLEQECTPGAIQMKLETSIENRMWA 416

Query: 300 SQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPALQ 350
           ++MTKHVME+NKHLQSRLLDLMQ R+L     D  + ++RK+  +E+  +Q
Sbjct: 417 ARMTKHVMEMNKHLQSRLLDLMQNRLL--LSADSTAARKRKRAMLESSRIQ 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136101|ref|XP_002322240.1| predicted protein [Populus trichocarpa] gi|222869236|gb|EEF06367.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/283 (55%), Positives = 186/283 (65%), Gaps = 19/283 (6%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           ++FS+D  LLISGS+DG++CVWSM  LL                    +  S  SLLHYS
Sbjct: 136 LIFSNDDSLLISGSEDGVVCVWSMVSLLDTE-----------------DFGSSCSLLHYS 178

Query: 61  LEHKSSVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
            EH SSVTGLLT SG   + F+SSSLDATCK WD+ SG LIQTQ YP  +TAI   P EQ
Sbjct: 179 SEHTSSVTGLLTTSGIANSTFISSSLDATCKAWDVFSGRLIQTQDYPLGITAIVTDPAEQ 238

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKT 179
           LLFAGS+DGRIFVS L   LLED F V  D+  VLKGHNGSI AL FS+  LISASED T
Sbjct: 239 LLFAGSMDGRIFVSVLDIGLLEDPFAVAGDEPVVLKGHNGSIMALTFSSVGLISASEDCT 298

Query: 180 VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNS 239
           VCLWDV  +V IRRFNHKKG VTNLVVI + SLL   SN +R   + R+  L K PQ  +
Sbjct: 299 VCLWDVVGQVIIRRFNHKKGAVTNLVVIPR-SLLHSASNHRRVSNQFRISVLSKCPQPAN 357

Query: 240 LSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTP 282
            S  ++ LL +C   KD Q S+++RRT SL Q + E++   +P
Sbjct: 358 SSNGILTLLHTCSSPKDHQASVDLRRTNSLDQQIFEMEVAFSP 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469775|ref|XP_004152594.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 211/327 (64%), Gaps = 20/327 (6%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           ++FS D   LI+GS DGMICVWSM  LL    EL+ +S               + +++  
Sbjct: 135 VLFSWDDSFLITGSSDGMICVWSMISLLD--VELVGNS---------------QPIVYCL 177

Query: 61  LEHKSSVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
           +EH SS+TGLLT+SG   +  +SSSLD + K WDL SG++  TQ + + +TAI  HP EQ
Sbjct: 178 MEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQ 237

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKT 179
           +LF+G++DG+IF S L+F   ++   + E+Q    KGH G+ITALAFS  +LISASED T
Sbjct: 238 VLFSGTVDGQIFASRLEFGF-DNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCT 296

Query: 180 VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNS 239
           VC+ D++ +  I++ +HKKG +TNLV I +SSL+S  SN +R   +  M SL+KYPQ  +
Sbjct: 297 VCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLIS-TSNRKRVSNQSSMSSLDKYPQPAN 355

Query: 240 LSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWA 299
           L    + L  S     ++  SI    T SL Q + +++ EGT AA+QMK + ++ +R WA
Sbjct: 356 LMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWA 415

Query: 300 SQMTKHVMEINKHLQSRLLDLMQCRIL 326
           S+MTK VM++N HLQSRLLD+M+ R+ 
Sbjct: 416 SRMTKEVMDMNNHLQSRLLDMMRIRLF 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477145|ref|XP_003608858.1| WD repeat-containing protein [Medicago truncatula] gi|355509913|gb|AES91055.1| WD repeat-containing protein [Medicago truncatula]

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 153/354 (43%), Positives = 208/354 (58%), Gaps = 23/354 (6%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           ++FS+D  LLISGS DGMICVWSM  LL                 +E E  S   LLH  
Sbjct: 162 IIFSNDDSLLISGSIDGMICVWSMISLLD----------------VE-ETESSNPLLHCL 204

Query: 61  LEHKSSVTGLL-TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
             H SS+TGLL T     +  +SSSLD TCKVWD  +G L+QTQ YP A+T I  H GE 
Sbjct: 205 SGHMSSITGLLATTCSCFSILISSSLDGTCKVWDFITGRLMQTQGYPLAITCITLHQGEH 264

Query: 120 LLFAGSIDGRIFVSPLKFLLLED-HFIVGEDQHSVLKGHNGSITALAFSASHLISASEDK 178
           +LF G+ +G I V+ L   L +  +F++ ED+   L GH G+ITA+A S + LIS+SED 
Sbjct: 265 ILFCGAKNGTIIVNMLDIGLEQGPNFMIREDKSLELTGHMGAITAMASSRTCLISSSEDC 324

Query: 179 TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLN 238
           T+C+WDV      RRF+ +K  VTNLVVI +S   S  SN  R+LK+  +  L+K P   
Sbjct: 325 TICIWDVIGWTITRRFDLQKWKVTNLVVIPRSPAFS-ASNNTRELKRYIVSPLDKCPLQI 383

Query: 239 SLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAM--QMKADVNMSQR 296
           S   E   LL  C   K+ Q  I++R T  L Q+M   Q+   P  M  +MK + N+  R
Sbjct: 384 SRYKETTTLLSLCRLFKEKQTYIDLRSTGLLRQNMFGSQKTDMPMTMTIEMKVETNIENR 443

Query: 297 TWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDPVSTQRRKKRKIETPALQ 350
           +W  +M KHV+ +N+ L+SRLLD+++CR+L   +I    T  RKK KI++ +L+
Sbjct: 444 SWGIKMAKHVIVMNRQLKSRLLDMIRCRLLCTNKIHSQKTA-RKKLKIKSISLE 496

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503714|ref|XP_004162140.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/327 (44%), Positives = 204/327 (62%), Gaps = 32/327 (9%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           ++FS D   LI+GS DGMICVWSM  LL    EL+ +S               + +++  
Sbjct: 135 VLFSWDDSFLITGSSDGMICVWSMISLLD--VELVGNS---------------QPIVYCL 177

Query: 61  LEHKSSVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
           +EH SS+TGLLT+SG   +  +SSSLD + K WDL SG++  TQ + + +TAI  HP EQ
Sbjct: 178 MEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQ 237

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKT 179
           +LF+G++DG+IF S L+F   ++   + E+Q    KGH G+ITALAFS  +LISASED T
Sbjct: 238 VLFSGTVDGQIFASRLEFGF-DNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCT 296

Query: 180 VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNS 239
           VC+ D++RR+            TNLV I +SSL+S  SN +R   +  M SL+KYPQ  +
Sbjct: 297 VCIRDISRRI------------TNLVAIPRSSLIS-TSNRKRVSNQSSMSSLDKYPQPAN 343

Query: 240 LSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWA 299
           L    + L  S     ++  SI    T SL Q + +++ EGT AA+QMK + ++ +R WA
Sbjct: 344 LMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWA 403

Query: 300 SQMTKHVMEINKHLQSRLLDLMQCRIL 326
           S+MTK VM++N HLQSRLLD+M+ R+ 
Sbjct: 404 SRMTKEVMDMNNHLQSRLLDMMRIRLF 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302785061|ref|XP_002974302.1| hypothetical protein SELMODRAFT_442453 [Selaginella moellendorffii] gi|300157900|gb|EFJ24524.1| hypothetical protein SELMODRAFT_442453 [Selaginella moellendorffii]

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 168/306 (54%), Gaps = 35/306 (11%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +VFSDD  LLISG++DG++ V+ + R L                 IE    +    +H  
Sbjct: 114 LVFSDDDSLLISGAEDGLVNVYPLVRALDS---------------IEEAGETQVPYMHKW 158

Query: 61  LEHKSSVTGLLTISGGTT-FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
            +H   VTGLL  SGG++   VS SLD TCK+W L  G L+++ ++P  + A+A  PGE 
Sbjct: 159 SDHTLPVTGLLAGSGGSSAIIVSCSLDHTCKIWSLALGALLRSILFPTPINAVALDPGEY 218

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ--HSVLKGHNGSITALAFS--ASHLISAS 175
            L+AG +DGRIF++ L F +     +   D    +   GH+ +ITALAFS     L+S S
Sbjct: 219 ALYAGGVDGRIFITALNFGVPSGSGLHSADGLLGADGIGHSRAITALAFSMDGVSLVSGS 278

Query: 176 EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSLLSEVSNCQRKLKKDRMPSLE-- 232
           ED TV LWD   R  +R F+H KG V++L+VI R SSLLS      R++ + R+P+L   
Sbjct: 279 EDCTVRLWDTVSRQVLRTFSHSKGPVSSLLVIPRPSSLLSSTDQQGRQINR-RLPTLPVV 337

Query: 233 ---KYPQLNSLSMEM-------VILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTP 282
              KY  + S++ +        V+L  +C  + +D    +     ++ + + EL+Q+G+ 
Sbjct: 338 PLSKYVTVESVAQDFKPWEGPPVVLPLTCPADDEDAEGYS-HSMVAMGRQIRELEQQGST 396

Query: 283 AAMQMK 288
           AAMQM+
Sbjct: 397 AAMQME 402

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302807963|ref|XP_002985676.1| hypothetical protein SELMODRAFT_122696 [Selaginella moellendorffii] gi|300146585|gb|EFJ13254.1| hypothetical protein SELMODRAFT_122696 [Selaginella moellendorffii]

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 162/312 (51%), Gaps = 45/312 (14%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +VFSDD  LLISG++DG++ V+ + R L                 IE    +    +H  
Sbjct: 124 LVFSDDDSLLISGAEDGLVNVYPLVRALDS---------------IEEAGETQVPYMHKW 168

Query: 61  LEHKSSVTGLLTISGGTT-FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
            +H   VTGLL  SGG++   VS SLD TCK+W L  G L+++ ++P  + A+A  PGE 
Sbjct: 169 SDHTLPVTGLLAGSGGSSAIIVSCSLDHTCKIWSLALGALLRSILFPTPINAVALDPGEY 228

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV--LKGHNG------SITALAFS--AS 169
            L+AG +DGRIF++ L F +       G   HS   L G +G      +ITALAFS    
Sbjct: 229 ALYAGGVDGRIFITALNFGVPS-----GSGLHSADGLLGADGIGHRFRAITALAFSMDGV 283

Query: 170 HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN--LVVIRQSSLLSEVSNCQRKLKKDR 227
            L+S SED TV LWD   R  +R F+H KG   N  LV+ R SSLLS      R++ + R
Sbjct: 284 SLVSGSEDCTVRLWDTVSRQVLRTFSHSKGDRPNSLLVIPRPSSLLSSTDQQGRQINR-R 342

Query: 228 MPSLEKYPQLNSLSMEMV-----------ILLQSCFFNKDDQCSINIRRTKSLFQHMSEL 276
           +P+L   P    +++E V           ++L   +   D+          ++ + + EL
Sbjct: 343 LPTLPVVPLSKYVTVESVAQDFKPWEGPPVVLPLTYPADDEDAEGYSHSMVAMGRQIREL 402

Query: 277 QQEGTPAAMQMK 288
           +Q+G+ AAMQM+
Sbjct: 403 EQQGSTAAMQME 414

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438791|ref|XP_003589672.1| Pre-rRNA-processing protein IPI3 [Medicago truncatula] gi|355478720|gb|AES59923.1| Pre-rRNA-processing protein IPI3 [Medicago truncatula]

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 151/302 (50%), Gaps = 40/302 (13%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +VFSDD  LLISGS+DG + VWS+  L                   ++  R  ++L  YS
Sbjct: 79  LVFSDDDSLLISGSEDGYVRVWSLFSLFD-----------------DLRSREEKNLYEYS 121

Query: 61  L-EHKSSVTGLLTISGG-TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE 118
             EH   VT ++  +GG     VS+S D TCKVW L  G L+++ V+P  + AI   P E
Sbjct: 122 FSEHTMRVTDVVIGNGGCNAIIVSASDDRTCKVWSLSRGTLLRSIVFPSVINAIVLDPAE 181

Query: 119 QLLFAGSIDGRIFVSPL---KFLLLEDH--FIVGEDQHSVLKGHNGSITALAFSASH--L 171
            + +AGS DG+IF++ L   +   ++++   I+G         H+ ++T LA+S     L
Sbjct: 182 HVFYAGSSDGKIFIAALNTERITTIDNYGMHIIGS-----FSNHSKAVTCLAYSKGRNLL 236

Query: 172 ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSE--VSNCQRKLKKDR-- 227
           IS SED  V +W+      +R F H KG +TN++V+RQ    S    SN Q   KK    
Sbjct: 237 ISGSEDGIVRVWNAKTHNIVRMFKHAKGPITNIIVVRQEIDPSNHTSSNLQAATKKHGSY 296

Query: 228 -MPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQ 286
            +P LEKY       ++  I L       D    ++   +  +  H+ ELQQ+G+  A +
Sbjct: 297 LLPPLEKYANSTDSDLKTAINLGGIRGCMD----VSYNSSNLISNHIKELQQQGSATASE 352

Query: 287 MK 288
           ++
Sbjct: 353 IE 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2082891	438	RID3 "AT3G49180" [Arabidopsis	0.614	0.490	0.302	5.5e-18
ZFIN|ZDB-GENE-040905-4	431	wdr18 "WD repeat domain 18" [D	0.357	0.290	0.361	3.3e-15
UNIPROTKB|Q9BV38	432	WDR18 "WD repeat-containing pr	0.457	0.370	0.353	1.5e-12
MGI|MGI:2158400	431	Wdr18 "WD repeat domain 18" [M	0.4	0.324	0.342	9.6e-12
UNIPROTKB|Q3SZD4	432	WDR18 "WD repeat-containing pr	0.42	0.340	0.331	1.6e-11
RGD|1310646	431	Wdr18 "WD repeat domain 18" [R	0.42	0.341	0.324	7.7e-11
DICTYBASE|DDB_G0288659	560	wdr18 "WD40 repeat-containing	0.197	0.123	0.328	1.6e-10
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.588	0.357	0.275	6.3e-08
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.488	0.125	0.328	1.5e-07
UNIPROTKB|Q6PBD6	305	wdr61 "WD repeat-containing pr	0.32	0.367	0.277	1.6e-07

TAIR|locus:2082891 RID3 "AT3G49180" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 71/235 (30%), Positives = 117/235 (49%)

Query:    66 SVTGLLTISGG-TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG 124
             SVT ++   GG     +SSS D TCKVW L  G L++  ++P  + A+A  PG  + +AG
Sbjct:   175 SVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAG 234

Query:   125 SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCL 182
             + D +I++  +         ++G       KG   +IT LA+ A    LIS SED  VC+
Sbjct:   235 ARDSKIYIGAINATSEYGTQVLGSVSE---KGK--AITCLAYCADGNLLISGSEDGVVCV 289

Query:   183 WDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR----MPSLEKY 234
             WD      +R   H    +KG V N+ ++R++ + +  SN  +   K R     P LEKY
Sbjct:   290 WDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVAN--SNKTQVSWKSRGALIPPPLEKY 347

Query:   235 PQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAA-MQMK 288
              +    +M+ ++ +    F+ D     +      + + + ELQQ+G+ A  M+M+
Sbjct:   348 ERPVEDTMDGIVTVDPPPFS-DVPVYSSFLSADLIDEQVKELQQQGSAATEMEME 401

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040905-4 wdr18 "WD repeat domain 18" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 47/130 (36%), Positives = 71/130 (54%)

Query:    82 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIF-VSPLKFLLL 140
             ++SLD T KVW++ SG ++ + ++   + ++ F P E  LF G  DG IF VS     L 
Sbjct:   191 TASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDGNIFQVSLCSTSLS 250

Query:   141 EDHFIVGEDQ-HSVLKGHNGSITALAFS--ASHLISASEDKTVCLWDVTRRVSIRRFNHK 197
              D     + + + V KGH   +T L+ S   + L+S S D+TV +WDV  +  I   NH+
Sbjct:   251 RDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTINHR 310

Query:   198 KGVVTNLVVI 207
              G VTN  +I
Sbjct:   311 -GPVTNAAII 319

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q9BV38 WDR18 "WD repeat-containing protein 18" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 63/178 (35%), Positives = 85/178 (47%)

Query:    67 VTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
             +T L    GG    V+ SSLD T K+W++ SG L+ + ++  ++ A+     E  +F G 
Sbjct:   175 ITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGG 234

Query:   126 IDGRIFVSPLKFLL---LEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTV 180
              +G IF   L F      E  F   +D   V KGH   +T L+ S   S L+S S D+TV
Sbjct:   235 SEGSIFQVDL-FTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 293

Query:   181 CLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLN 238
              LWDV  +  IR     KG VTN  +     LL+ VS     L  D  PSL   P  N
Sbjct:   294 RLWDVQSKQCIRTVA-LKGPVTNAAI-----LLAPVS----MLSSDFRPSLP-LPHFN 340

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2158400 Wdr18 "WD repeat domain 18" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 50/146 (34%), Positives = 75/146 (51%)

Query:    67 VTGLLTISGGTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
             +T L    GG    V++ SLD T K+W + SG L+ + ++   +T++     E  +F G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGG 234

Query:   126 IDGRIF-VSPLKFLLLEDH-FIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVC 181
              DG IF V    +  L +H F   ++   V KGH   +T L+ S   S L+S S D++V 
Sbjct:   235 SDGSIFQVDLCSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESVR 294

Query:   182 LWDVTRRVSIRRFNHKKGVVTNLVVI 207
             LWDV  +  +R     KG VTN  +I
Sbjct:   295 LWDVKSKQCLRTVT-LKGPVTNAAII 319

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3SZD4 WDR18 "WD repeat-containing protein 18" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 51/154 (33%), Positives = 78/154 (50%)

Query:    67 VTGLLTISGGTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
             +T L    GG    V++ SLD T K+W++ SG L+ + ++   + A+     E  +F G 
Sbjct:   175 ITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGG 234

Query:   126 IDGRIF-VSPLKFLLLEDHFIVGEDQHS-VLKGHNGSITALAFSA--SHLISASEDKTVC 181
              DG IF V    +    +     E +H  V +GH   +T L+ S   S L+S S D+TV 
Sbjct:   235 SDGSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVR 294

Query:   182 LWDVTRRVSIRRFNHKKGVVTNL-VVIRQSSLLS 214
             LWDV  +  +R     KG VTN  +++   S+LS
Sbjct:   295 LWDVQSQQCLRTVT-LKGPVTNACIMLAPVSMLS 327

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

RGD|1310646 Wdr18 "WD repeat domain 18" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
 Identities = 50/154 (32%), Positives = 77/154 (50%)

Query:    67 VTGLLTISGGTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
             +T L    GG    V++ SLD T K+W + SG L+ + ++   +T++     E  +F G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGG 234

Query:   126 IDGRIFVSPL--KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVC 181
              DG IF   L  +    E  F   ++   V KGH   +T L+ S   S L+S S D++V 
Sbjct:   235 SDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVR 294

Query:   182 LWDVTRRVSIRRFNHKKGVVTNLVV-IRQSSLLS 214
             LWDV  +  +R     KG VTN  + +   S+L+
Sbjct:   295 LWDVKSKQCVRTVP-LKGPVTNAAITLAPPSMLN 327

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

DICTYBASE|DDB_G0288659 wdr18 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 107 (42.7 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query:    67 VTGLLTISGG-TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS 125
             +T ++   GG  +   S SLD TCK+WDL +G  I + ++P  +T++     E   + G 
Sbjct:   207 ITSIVCSFGGCNSRLFSVSLDRTCKIWDLVTGRCINSIIFPTYLTSVCLDSTETTCYVGG 266

Query:   126 IDGRIFVSPL 135
              DG I+ + L
Sbjct:   267 GDGIIYQTDL 276

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 153 (58.9 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 65/236 (27%), Positives = 99/236 (41%)

Query:     3 FSDDGFLLISGSDDGMICVWSM-TRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXXX 61
             +S D  LL S SDD  + +W   T  L+ T E   HSD +   +                
Sbjct:   304 YSHDSRLLASASDDRTVKIWDTETGSLQHTLE--GHSDLVRSVIFSHDSRLLASASDSTV 361

Query:    62 XXKSSVTGLL--TISG------------GTTFFVSSSLDATCKVWDLGSGILIQT-QVYP 106
                 + TG L  T+ G             +    S+S D+T K+WD G+G L  T + + 
Sbjct:   362 KIWDTGTGSLQHTLEGHRDWVRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHR 421

Query:   107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF 166
               V ++ F    QLL + S D  + +              G  QH+ L+GH   + ++ F
Sbjct:   422 DWVRSVIFSHDSQLLASASDDSTVKIWDTG---------TGSLQHT-LEGHRDWVRSVIF 471

Query:   167 SA-SHLI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ 220
             S  S L+ SAS+D+TV +WD  +            +VT++     S LL+  SN Q
Sbjct:   472 SHDSRLLASASDDRTVRIWDTEKGSHKHTLEGHSSLVTSVSFSHDSRLLASASNDQ 527

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 154 (59.3 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 67/204 (32%), Positives = 91/204 (44%)

Query:     1 MVFSDDGFLLISGSDDGMICVWS-MTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXX 59
             +VFS DG  L+SGS D  + +W   T  L QT  L  HS  ++                 
Sbjct:   756 VVFSPDGKQLVSGSYDDTVKIWDPATGELLQT--LDGHSGTVESLAFSPDGKLLASGSYD 813

Query:    60 XXXXK-SSVTG--LLTISG------GTTF------FVSSSLDATCKVWDLGSGILIQT-Q 103
                    S TG  L T  G         F        S+S D+T K+WDL +G L QT  
Sbjct:   814 NTIDLWDSATGELLQTFEGHPHSIWSVAFAPDGKELASASDDSTIKIWDLATGELQQTLD 873

Query:   104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFV-SPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
              + Q+V ++AF P  +LL + S+D  I V +P            GE Q S L+G +G + 
Sbjct:   874 SHSQSVRSVAFSPDGKLLASSSLDSTIKVWNPA----------TGELQQS-LEGRSGWVK 922

Query:   163 ALAFS--ASHLISASEDKTVCLWD 184
             ++AFS     L S SE  TV LW+
Sbjct:   923 SVAFSPDGKKLASGSEKNTVKLWN 946

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q6PBD6 wdr61 "WD repeat-containing protein 61" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 134 (52.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 35/126 (27%), Positives = 63/126 (50%)

Query:    79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
             +  S ++D    ++D+ +G L+ T + +   + ++ F P  QLL   S DG I +  ++ 
Sbjct:   162 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYEVQH 221

Query:   138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRF- 194
               L           + L GH   +  +AFS   +H +S+S DK+V +WDV+ R  +  F 
Sbjct:   222 ASLA----------ATLSGHGSWVLNVAFSPDDTHFVSSSSDKSVKVWDVSARTCVHTFL 271

Query:   195 NHKKGV 200
             +H+  V
Sbjct:   272 DHQDQV 277

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-07
smart00320	40	smart00320, WD40, WD40 repeats	8e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 94.3 bits (235), Expect = 4e-22
 Identities = 60/204 (29%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQ-----------------LDQ-- 43
           FS DG +L S S D  I VW      K  + L  H+D                   D   
Sbjct: 101 FSPDGRILSSSSRDKTIKVWD-VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159

Query: 44  RLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ 103
           +L ++      + L     H   V  +   S      +SSS D T K+WDL +G  + T 
Sbjct: 160 KLWDLRTGKCVATLT---GHTGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Query: 104 VY-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
                 V ++AF P   LL +GS DG I V  L+            +    L GH  S+T
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR----------TGECVQTLSGHTNSVT 265

Query: 163 ALAFSAS--HLISASEDKTVCLWD 184
           +LA+S     L S S D T+ +WD
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 5e-22
 Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 38/222 (17%)

Query: 2   VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL-------DQRLI-------- 46
             S DG  L SGS D  I +W      +    L  H+  +       D R++        
Sbjct: 58  AASADGTYLASGSSDKTIRLWD-LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 47  ----EMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
               ++E     + L     H   V  +   S   TF  SSS D T K+WDL +G  + T
Sbjct: 117 IKVWDVETGKCLTTLRG---HTDWVNSV-AFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 103 -QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161
              +   V ++AF P  + L + S DG I +  L                  L+GH   +
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS----------TGKCLGTLRGHENGV 222

Query: 162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGV 200
            ++AFS     L S SED T+ +WD+     ++    H   V
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 42/202 (20%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           FS DG LL +GS DG I VW +             + +L + L                 
Sbjct: 17  FSPDGKLLATGSGDGTIKVWDLE------------TGELLRTLK---------------G 49

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLL 121
           H   V  +   + G T+  S S D T ++WDL +G  ++T   +   V+++AF P  ++L
Sbjct: 50  HTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108

Query: 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKT 179
            + S D  I V              G+     L+GH   + ++AFS     + S+S+D T
Sbjct: 109 SSSSRDKTIKV---------WDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 180 VCLWDVTRRVSIRRFN-HKKGV 200
           + LWD+     +     H   V
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEV 180

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 56  LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAF 114
           L      H   VT +   S       + S D T KVWDL +G L++T + +   V  +A 
Sbjct: 1   LRRTLKGHTGGVTCV-AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 115 HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LI 172
                 L +GS D  I +  L+            +    L GH   ++++AFS     L 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLE----------TGECVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 173 SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS 214
           S+S DKT+ +WDV     +         V ++      + ++
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.8 bits (177), Expect = 4e-14
 Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 30/223 (13%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL-----------------DQ 43
             FS DG LL SGS DG I +W +         L  HS  +                 D 
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 44  RLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT 102
            +   +L + + L   +L+ H+  V+ L     G+      S D T ++WDL +G  ++T
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
                 V +++F P  +++ +GS DG + +  L    L             L GH   +T
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL----------LRNLDGHTSRVT 416

Query: 163 ALAFSAS--HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN 203
           +L FS     L S S D T+ LWD+   +    F+    V+ +
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 3e-12
 Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 34/243 (13%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD--------------------- 39
           + FS DG LL+SGS DG I +W +    K    L    D                     
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 40  QLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL 99
            LD  +   +L +   L+     H  SVT L     G      SSLD T K+WDL +G  
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 100 IQT-QVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH 157
           + T   +   V+++AF P   LL A  S DG I +  L           G+   S L GH
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGH 241

Query: 158 -NGSITALAFSASHLISASEDKTVCLWDV-TRRVSIRRFNHKKGVVTNLVVIRQSSLLSE 215
            +  +++ +   S L S S D T+ LWD+ +    +R  +     V ++       LL+ 
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 216 VSN 218
            S+
Sbjct: 302 GSS 304

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 29/131 (22%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + FS DG  L+S S DG I +W ++                        L +LR      
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLS--------------------TGKCLGTLRG----- 217

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
             H++ V  +     G     S S D T +VWDL +G  +QT   +  +VT++A+ P  +
Sbjct: 218 --HENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274

Query: 120 LLFAGSIDGRI 130
            L +GS DG I
Sbjct: 275 RLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 31/222 (13%)

Query: 1   MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQL-------DQRLIEMELRS 52
           + FS DG LL SGS  DG I +W + R  K  S L  H+D +       D  L+     S
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 53  LRSLLHYSLEHKSSVTGLL---------TISGGTTFFVSSSLDATCKVWDLGSG--ILIQ 101
             ++  + L     +   L         + S   +   S S D T ++WDL S   +L  
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 102 TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI 161
              +  +V ++AF P  +LL +GS DG + +  L+   L             LKGH G +
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--------LKGHEGPV 331

Query: 162 TALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGV 200
           ++L+FS      +   S+D T+ LWD+     ++       V
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 153 VLKGHNGSITALAFSAS--HLISASEDKTVCLWD 184
            LKGH G +T++AFS     L S S+D TV +WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 8e-07
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 150 QHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWD 184
               LKGH G +T++AFS    +L S S+D T+ LWD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 52  SLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTA 111
            L           S     L  S      ++   D+   + DL S +L   + +  ++T+
Sbjct: 14  KLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLL---RGHEDSITS 70

Query: 112 IAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHL 171
           IAF P  +LL +GS DG I +  L         + G    SV K    S    +   +  
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA-- 128

Query: 172 ISASEDKTVCLWDV-TRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK 224
            S+S D TV LWD+ T    IR        VT+L       LL+  S+    +K
Sbjct: 129 -SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 28/93 (30%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + FS DG+LL SGS+DG I VW +             + +  Q L               
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDL------------RTGECVQTLS-------------- 258

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWD 93
             H +SVT  L  S       S S D T ++WD
Sbjct: 259 -GHTNSVTS-LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 62  EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAF--HPGEQ 119
           EH+  V  +   S   T   S S D + K+W +  G+ I T      +  + F    G  
Sbjct: 573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRS 632

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF-SASHLISASEDK 178
           L F GS D +++   L+   L             + GH+ +++ + F  +S L+S+S D 
Sbjct: 633 LAF-GSADHKVYYYDLRNPKLP---------LCTMIGHSKTVSYVRFVDSSTLVSSSTDN 682

Query: 179 TVCLWDVTRRVS 190
           T+ LWD++  +S
Sbjct: 683 TLKLWDLSMSIS 694

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 1  MVFSDDGFLLISGSDDGMICVWS 23
          + FS DG  L SGSDDG I +W 
Sbjct: 18 VAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 1  MVFSDDGFLLISGSDDGMICVWS 23
          + FS DG LL SGSDDG + VW 
Sbjct: 17 VAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
PTZ00421	493	coronin; Provisional	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.85
KOG0641	350	consensus WD40 repeat protein [General function pr	99.85
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG0646	476	consensus WD40 repeat protein [General function pr	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.82
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG1274	933	consensus WD40 repeat protein [General function pr	99.78
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.76
KOG2055	514	consensus WD40 repeat protein [General function pr	99.76
KOG2055	514	consensus WD40 repeat protein [General function pr	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.75
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.74
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.74
KOG4328	498	consensus WD40 protein [Function unknown]	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.72
KOG2048	691	consensus WD40 repeat protein [General function pr	99.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.66
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
KOG1539	910	consensus WD repeat protein [General function pred	99.61
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.6
KOG1273	405	consensus WD40 repeat protein [General function pr	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.59
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.59
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.59
KOG1188	376	consensus WD40 repeat protein [General function pr	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.56
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.56
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.56
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.55
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG0649	325	consensus WD40 repeat protein [General function pr	99.53
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.47
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
PRK01742	429	tolB translocation protein TolB; Provisional	99.4
KOG1334	559	consensus WD40 repeat protein [General function pr	99.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.37
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.34
KOG1963	792	consensus WD40 repeat protein [General function pr	99.34
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.32
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.3
PRK02889	427	tolB translocation protein TolB; Provisional	99.3
PRK03629	429	tolB translocation protein TolB; Provisional	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.26
PRK04792	448	tolB translocation protein TolB; Provisional	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.25
KOG4227	609	consensus WD40 repeat protein [General function pr	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.19
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.13
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.12
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.09
PRK00178	430	tolB translocation protein TolB; Provisional	99.09
PRK04792	448	tolB translocation protein TolB; Provisional	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.05
KOG4547	541	consensus WD40 repeat-containing protein [General	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
PRK01029	428	tolB translocation protein TolB; Provisional	98.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.97
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.93
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.91
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.89
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.85
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
KOG2695	425	consensus WD40 repeat protein [General function pr	98.83
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.83
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.82
KOG1334	559	consensus WD40 repeat protein [General function pr	98.82
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.8
KOG2315	566	consensus Predicted translation initiation factor	98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.72
COG4946	668	Uncharacterized protein related to the periplasmic	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.63
KOG2315	566	consensus Predicted translation initiation factor	98.6
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.59
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
KOG2314	698	consensus Translation initiation factor 3, subunit	98.52
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.46
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.43
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.42
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.39
PRK04043	419	tolB translocation protein TolB; Provisional	98.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.36
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG2314	698	consensus Translation initiation factor 3, subunit	98.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.26
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.23
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.22
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.2
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.11
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.1
PRK02888	635	nitrous-oxide reductase; Validated	98.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.07
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.97
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.92
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.92
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.84
KOG2395	644	consensus Protein involved in vacuole import and d	97.81
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.8
COG3391	381	Uncharacterized conserved protein [Function unknow	97.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.56
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.52
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.38
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.37
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.36
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.35
COG3391	381	Uncharacterized conserved protein [Function unknow	97.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.24
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.96
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.9
KOG2444	238	consensus WD40 repeat protein [General function pr	96.88
PRK13616	591	lipoprotein LpqB; Provisional	96.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.78
PRK02888	635	nitrous-oxide reductase; Validated	96.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.65
KOG2395	644	consensus Protein involved in vacuole import and d	96.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.42
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.35
PHA02713	557	hypothetical protein; Provisional	96.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.08
KOG2444	238	consensus WD40 repeat protein [General function pr	95.95
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.91
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.88
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.82
PHA02713	557	hypothetical protein; Provisional	95.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.73
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.64
PRK13616	591	lipoprotein LpqB; Provisional	95.6
COG5167	776	VID27 Protein involved in vacuole import and degra	95.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.55
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.5
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.26
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.21
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.04
PHA03098	534	kelch-like protein; Provisional	94.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.9
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.82
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.7
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.61
KOG2247	615	consensus WD40 repeat-containing protein [General	94.54
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.38
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.07
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.85
PHA02790	480	Kelch-like protein; Provisional	93.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.63
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.35
KOG2247	615	consensus WD40 repeat-containing protein [General	93.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.86
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.69
PHA02790	480	Kelch-like protein; Provisional	92.63
PHA03098	534	kelch-like protein; Provisional	92.58
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.25
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.25
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.85
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.67
COG5167	776	VID27 Protein involved in vacuole import and degra	90.5
PRK13684	334	Ycf48-like protein; Provisional	90.47
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.11
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.59
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.84
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.67
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.17
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.21
PRK13684	334	Ycf48-like protein; Provisional	87.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.08
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	86.84
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.44
COG5276	370	Uncharacterized conserved protein [Function unknow	86.42
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.28
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.05
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.63
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.58
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.49
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.07
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.75
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.73
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.39
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	84.02
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.51
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.45
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.35
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.02
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.45
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.11
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.98
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.43
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.41

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=240.23  Aligned_cols=188  Identities=22%  Similarity=0.264  Sum_probs=171.5

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l   80 (350)
                      .||+|+..|||||.+|.++||+..                           ....+..+.+|...|.++.|+|. ++..+
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~---------------------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~l  234 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVP---------------------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNL  234 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecC---------------------------CcceeEEEeccccceeeEEEccCCCccce
Confidence            689999999999999999999998                           46788899999999999999997 46689


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +||+.||++++|++.+..++..+ .|...|..++|+|+|++|.+++.|.+-++||+++.          .......||..
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~  304 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----------SELLLQEGHSK  304 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc----------hhhHhhccccc
Confidence            99999999999999998888775 48889999999999999999999999999999953          34446789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD  226 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~  226 (350)
                      .|.+++|+|+|  +++|+.|..-+|||+++|+++..+.+|..+|.+|+|+|+|..|++|++|.  ++|++.
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            99999999999  88999999999999999999999999999999999999999999888874  566554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-35  Score=234.96  Aligned_cols=232  Identities=22%  Similarity=0.275  Sum_probs=190.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|.+|+||+.|.++++||+.                           +..+..+..+|...|.|++|+| ++..|
T Consensus       121 ~~fsp~g~~l~tGsGD~TvR~WD~~---------------------------TeTp~~t~KgH~~WVlcvawsP-Dgk~i  172 (480)
T KOG0271|consen  121 VQFSPTGSRLVTGSGDTTVRLWDLD---------------------------TETPLFTCKGHKNWVLCVAWSP-DGKKI  172 (480)
T ss_pred             EEecCCCceEEecCCCceEEeeccC---------------------------CCCcceeecCCccEEEEEEECC-Ccchh
Confidence            4799999999999999999999999                           5788889999999999999966 88999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           81 VSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++|+.||+|++||..+|+.+-.  -.|...|++++|.|     ..++|++++.||.|+|||+.          ....+..
T Consensus       173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~----------~~~~~~~  242 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK----------LGTCVRT  242 (480)
T ss_pred             hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc----------CceEEEE
Confidence            9999999999999999987765  45999999999987     56799999999999999998          4555668


Q ss_pred             eeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE-----------ccCCe---------
Q 045370          154 LKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-----------RQSSL---------  212 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~~---------  212 (350)
                      +.+|+.+|+|+.|-.++ +++|+.|++|++|+...|.++..+.+|...|..++.+           |.++.         
T Consensus       243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            89999999999999888 9999999999999999999999999999999998876           33444         


Q ss_pred             ----------------EEeeecCccccccc---------cCCccccCCCCccccccceEEeeccccCCCCcccccccccc
Q 045370          213 ----------------LSEVSNCQRKLKKD---------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTK  267 (350)
Q Consensus       213 ----------------l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (350)
                                      |++|+.|..++-+.         .+......+....++++++.+....|   |..+.+|.-.+|
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF---DkSVkLW~g~tG  399 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF---DKSVKLWDGRTG  399 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec---ccceeeeeCCCc
Confidence                            77666664433222         12223345566677777776664442   566777777777


Q ss_pred             hhhHhh
Q 045370          268 SLFQHM  273 (350)
Q Consensus       268 ~~~~~~  273 (350)
                      .|+...
T Consensus       400 k~lasf  405 (480)
T KOG0271|consen  400 KFLASF  405 (480)
T ss_pred             chhhhh
Confidence            766544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.8e-35  Score=237.26  Aligned_cols=215  Identities=22%  Similarity=0.303  Sum_probs=183.1

Q ss_pred             CeecCC--CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDD--GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~d--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +.|+|.  +..||||+.||++++|+++                           ...++..+.+|...|..++|+| +|.
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~---------------------------~e~~l~~l~gH~~RVs~VafHP-sG~  274 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLS---------------------------QETPLQDLEGHLARVSRVAFHP-SGK  274 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccC---------------------------CCcchhhhhcchhhheeeeecC-CCc
Confidence            478997  5689999999999999999                           4678888999999999999966 789


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +|+|++.|.+-++||+.++..+.. -+|...|.+++|+|||..+++|+.|..-+|||+++          ...+..+.+|
T Consensus       275 ~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt----------gr~im~L~gH  344 (459)
T KOG0272|consen  275 FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT----------GRCIMFLAGH  344 (459)
T ss_pred             eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc----------CcEEEEeccc
Confidence            999999999999999999876655 46999999999999999999999999999999994          5566689999


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeeecCc--cccccccCCccc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVSNCQ--RKLKKDRMPSLE  232 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~~--~~~~~~~~~~~~  232 (350)
                      ..+|.+++|+|+|  ++||+.|++++|||++..+.++++.+|.+-|+.|.|+| .|.+|++++.|.  ++|....+.+  
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~--  422 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP--  422 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc--
Confidence            9999999999999  99999999999999999999999999999999999999 577888777663  3443323322  


Q ss_pred             cCCCCccccccceEEeeccccCCCCcccccccccchhh
Q 045370          233 KYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLF  270 (350)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (350)
                                     +....||.+.++++..++++.++
T Consensus       423 ---------------~ksLaGHe~kV~s~Dis~d~~~i  445 (459)
T KOG0272|consen  423 ---------------LKSLAGHEGKVISLDISPDSQAI  445 (459)
T ss_pred             ---------------chhhcCCccceEEEEeccCCceE
Confidence                           33345666677777766666544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=227.41  Aligned_cols=228  Identities=25%  Similarity=0.265  Sum_probs=182.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee----CC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS----GG   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~   76 (350)
                      |+|||||+.||+|+.||.|++||..+                          .......+.+|...|++++|-|    +.
T Consensus       163 vawsPDgk~iASG~~dg~I~lwdpkt--------------------------g~~~g~~l~gH~K~It~Lawep~hl~p~  216 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDGSIRLWDPKT--------------------------GQQIGRALRGHKKWITALAWEPLHLVPP  216 (480)
T ss_pred             EEECCCcchhhccccCCeEEEecCCC--------------------------CCcccccccCcccceeEEeecccccCCC
Confidence            58999999999999999999999874                          2445567899999999999976    34


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc------------
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH------------  143 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------  143 (350)
                      ..+|++++.||.|+|||+..++++..+ .|..+|+|++|-- ..+|++|+.|++|++|+...+.+...            
T Consensus       217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             ccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence            568999999999999999999988875 6999999999953 45999999999999999866431100            


Q ss_pred             -----------------------------------------------------c----ccccccceeeeccCCceEEEEe
Q 045370          144 -----------------------------------------------------F----IVGEDQHSVLKGHNGSITALAF  166 (350)
Q Consensus       144 -----------------------------------------------------~----~~~~~~~~~~~~~~~~i~~~~~  166 (350)
                                                                           +    ....+++....+|..-|+.+.|
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f  375 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF  375 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence                                                                 0    0011244467889999999999


Q ss_pred             cCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccccCCCCccccccc
Q 045370          167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEM  244 (350)
Q Consensus       167 ~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (350)
                      +|++  +++++.|..|++||.++|+.+.+|.+|.++|..++|+.|.++|++++.|. .+++|++..              
T Consensus       376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-TLKvw~V~t--------------  440 (480)
T KOG0271|consen  376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-TLKVWDVRT--------------  440 (480)
T ss_pred             CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc-eEEEEEeee--------------
Confidence            9999  99999999999999999999999999999999999999999999777663 334443322              


Q ss_pred             eEEeeccccCCCCcccccccccchhh
Q 045370          245 VILLQSCFFNKDDQCSINIRRTKSLF  270 (350)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (350)
                      +.+.....||.|.+..+.++++|...
T Consensus       441 kKl~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  441 KKLKQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             eeecccCCCCCceEEEEEecCCCcee
Confidence            22334445677777777777776643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-32  Score=212.02  Aligned_cols=187  Identities=20%  Similarity=0.304  Sum_probs=161.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++.++||++.++++.|+++++||+.                           .+...+.+.+|...|.++++++ +...+
T Consensus        69 v~~s~dg~~alS~swD~~lrlWDl~---------------------------~g~~t~~f~GH~~dVlsva~s~-dn~qi  120 (315)
T KOG0279|consen   69 VVLSSDGNFALSASWDGTLRLWDLA---------------------------TGESTRRFVGHTKDVLSVAFST-DNRQI  120 (315)
T ss_pred             eEEccCCceEEeccccceEEEEEec---------------------------CCcEEEEEEecCCceEEEEecC-CCcee
Confidence            4678999999999999999999999                           5677888999999999999976 66789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++|+.|++|++|++..+........  .+.|.|++|+|+  ..+|++++.|++|++||+++.+..          ..+.+
T Consensus       121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----------~~~~g  190 (315)
T KOG0279|consen  121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----------TTFIG  190 (315)
T ss_pred             ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----------hcccc
Confidence            9999999999999885544433333  678999999997  679999999999999999965443          37789


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC-ccccccc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC-QRKLKKD  226 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~-~~~~~~~  226 (350)
                      |.+.++.++++|||  .++|+.||.+.+||++.++.++.+. |...|.+++|+|+.-.|+.+... .++|...
T Consensus       191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence            99999999999999  8999999999999999999999887 78899999999999888766554 5566554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-33  Score=245.62  Aligned_cols=187  Identities=24%  Similarity=0.388  Sum_probs=172.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ..|+|+.++|+++|.|++||+|.+.                           +...+..+.+|..+|+++.|+| .|.+|
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~---------------------------t~s~~V~y~GH~~PVwdV~F~P-~GyYF  508 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLD---------------------------TWSCLVIYKGHLAPVWDVQFAP-RGYYF  508 (707)
T ss_pred             eeecccccceeeccCCcceeeeecc---------------------------cceeEEEecCCCcceeeEEecC-CceEE
Confidence            3699999999999999999999999                           5778888899999999999975 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ||++.|++-++|......+++.+ .|-..|.|+.|||+.+|+++|+.|.+|++||+.          ++..++.+.||.+
T Consensus       509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~----------~G~~VRiF~GH~~  578 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS----------TGNSVRIFTGHKG  578 (707)
T ss_pred             EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC----------CCcEEEEecCCCC
Confidence            99999999999999998888874 588999999999999999999999999999999          4556779999999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--ccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKK  225 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~  225 (350)
                      +|.+++|+|+|  |++|+.||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++++.|.  ++|.+
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            99999999999  99999999999999999999999999999999999999999999887763  44433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.8e-32  Score=215.68  Aligned_cols=242  Identities=21%  Similarity=0.294  Sum_probs=198.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |++.|.+.+|+||+.|++|+|||+.                           ++.+..++.+|...|..+++++ ...++
T Consensus       157 vavdP~n~wf~tgs~DrtikIwDla---------------------------tg~LkltltGhi~~vr~vavS~-rHpYl  208 (460)
T KOG0285|consen  157 VAVDPGNEWFATGSADRTIKIWDLA---------------------------TGQLKLTLTGHIETVRGVAVSK-RHPYL  208 (460)
T ss_pred             EeeCCCceeEEecCCCceeEEEEcc---------------------------cCeEEEeecchhheeeeeeecc-cCceE
Confidence            5788999999999999999999999                           6888889999999999999966 56789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|+.|+.||+..++.++. .+|-..|.|++.+|.-..|++|+.|..+++||++          ....+..+.+|..
T Consensus       209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR----------tr~~V~~l~GH~~  278 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR----------TRASVHVLSGHTN  278 (460)
T ss_pred             EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec----------ccceEEEecCCCC
Confidence            9999999999999999998887 5799999999999999999999999999999999          4566779999999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc-cccccccCCcccc---
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ-RKLKKDRMPSLEK---  233 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~---  233 (350)
                      +|..+.+.|..  +++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.|. +.|.+....-+..   
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg  358 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG  358 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence            99999999866  99999999999999999999999999999999999999999999888774 4444432111111   


Q ss_pred             ---CCCCccccccceEEeeccccCCCCcccccccccchhhHhhhhhhccCCHHH
Q 045370          234 ---YPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAA  284 (350)
Q Consensus       234 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  284 (350)
                         ++...+...++. +   +.|...|.+.+|.+.++..++......++|+...
T Consensus       359 h~~iintl~~nsD~v-~---~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s  408 (460)
T KOG0285|consen  359 HNAIINTLSVNSDGV-L---VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES  408 (460)
T ss_pred             ccceeeeeeeccCce-E---EEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence               111111112221 1   1344566778888888888887777777777543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.6e-31  Score=233.43  Aligned_cols=243  Identities=23%  Similarity=0.265  Sum_probs=187.5

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCcccc----ccccccc---cccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLL----KQTSELM---HHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      .||+|+..||.|-.|-.|++|.+....    +......   ..+....   ..............+.+|.++|.++.|+|
T Consensus       385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~---~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD---VDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchh---hhhccccCCceeEEeecCCCceeeeeecc
Confidence            689999999999999999999998421    0000000   0011111   22222223445566899999999999976


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                       +.++|++++.|++|++|.+.+..++..+ +|..||..+.|+|.|.+|++++.|++-++|...          ...+.+.
T Consensus       462 -d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d----------~~~PlRi  530 (707)
T KOG0263|consen  462 -DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD----------HNKPLRI  530 (707)
T ss_pred             -cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------cCCchhh
Confidence             7789999999999999999999888775 588999999999999999999999999999988          4667779


Q ss_pred             eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370          154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL  231 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  231 (350)
                      +.+|-+.|.|+.|+|+.  +++||.|.+||+||..+|..++.|.+|.++|.+|+|||+|++|++|+.++. +.+|++..-
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~  609 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANG  609 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCC
Confidence            99999999999999998  999999999999999999999999999999999999999999997777654 344544332


Q ss_pred             ---------ccCCCCccccccceEEeeccccCCCCccccc
Q 045370          232 ---------EKYPQLNSLSMEMVILLQSCFFNKDDQCSIN  262 (350)
Q Consensus       232 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  262 (350)
                               ...+.+.+++.++..++   .++.+..+.+|
T Consensus       610 ~~v~~l~~Ht~ti~SlsFS~dg~vLa---sgg~DnsV~lW  646 (707)
T KOG0263|consen  610 SLVKQLKGHTGTIYSLSFSRDGNVLA---SGGADNSVRLW  646 (707)
T ss_pred             cchhhhhcccCceeEEEEecCCCEEE---ecCCCCeEEEE
Confidence                     22333444455554444   33344555555

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=2.1e-30  Score=201.90  Aligned_cols=208  Identities=18%  Similarity=0.257  Sum_probs=170.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc----------------cc--cccccEEEeecc---ccccceee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH----------------SD--QLDQRLIEMELR---SLRSLLHY   59 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~---~~~~~~~~   59 (350)
                      |.|++|.++|+++|.||.+.|||.-+..+..-...+.                .+  .....++.+..+   ......+.
T Consensus        61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~  140 (343)
T KOG0286|consen   61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE  140 (343)
T ss_pred             eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence            5799999999999999999999987644432211111                01  123355555433   12245567


Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCc
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      +.+|++.+.|+.|.. + ..|+|++.|.++.+||+++++.+..+ .|.+.|.++.+.| +++.+++|+.|+..++||++.
T Consensus       141 l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             ecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            899999999999965 4 45899999999999999999998886 5999999999999 999999999999999999994


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeE
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l  213 (350)
                                ...+..|.+|...|+++.|.|+|  +++|+.|++.++||+|..+.+..+..  -..+|++++||..|++|
T Consensus       219 ----------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  219 ----------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             ----------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence                      45556999999999999999999  99999999999999999988888863  24589999999999999


Q ss_pred             EeeecCc
Q 045370          214 SEVSNCQ  220 (350)
Q Consensus       214 ~~~~~~~  220 (350)
                      ++|..|.
T Consensus       289 fagy~d~  295 (343)
T KOG0286|consen  289 FAGYDDF  295 (343)
T ss_pred             EeeecCC
Confidence            9775553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=8.2e-30  Score=194.39  Aligned_cols=222  Identities=19%  Similarity=0.187  Sum_probs=177.9

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccc-----------------cccccccEEEeeccccccceeeeccccCCceEE
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHH-----------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGL   70 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   70 (350)
                      -+|+|+|.|.+|++|...++.+.....-..                 .....-++++++..+. .++..+.+|+..|..+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np-~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP-NPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC-CceeEEeccCCceEEE
Confidence            489999999999999998765433222111                 1122335566554443 3788999999999999


Q ss_pred             EEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-------
Q 045370           71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-------  143 (350)
Q Consensus        71 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------  143 (350)
                      .|. .++.+++||++||+++|||++...+.+.+.+..+|+++..+|+...|++|..+|.|++||+....+...       
T Consensus        90 gF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            985 488999999999999999999988888899999999999999999999999999999999987531110       


Q ss_pred             --------------------------------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-
Q 045370          144 --------------------------------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR-  188 (350)
Q Consensus       144 --------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-  188 (350)
                                                      ......++..++.|.+.+..+.+||++  |++++.|.+++||+..+. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence                                            111223555788999999999999999  999999999999999987 


Q ss_pred             eEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccc
Q 045370          189 VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLE  232 (350)
Q Consensus       189 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~  232 (350)
                      +.-..+.+|...+..++||.+|+||++++.| ...++|+++.-.
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd-~~~rlW~~~~~k  291 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSD-HTARLWDLSAGK  291 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCC-CceeecccccCc
Confidence            5566778899999999999999999988888 666666665433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.3e-29  Score=209.32  Aligned_cols=183  Identities=27%  Similarity=0.363  Sum_probs=162.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+.+|.+||+|+.||.++||+..                            +.++..+..|.++|.++.|+. .+.++
T Consensus       241 L~Wn~~G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk-~G~yi  291 (524)
T KOG0273|consen  241 LDWNNDGTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNK-KGTYI  291 (524)
T ss_pred             EEecCCCCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcC-CCCEE
Confidence            5899999999999999999999987                            778888999999999999965 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE------------------------------------------EecCCceeEEEEcCCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT------------------------------------------QVYPQAVTAIAFHPGE  118 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~  118 (350)
                      ++++.|+++.+||..++...+.                                          ..|.++|.++.|+|.+
T Consensus       292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg  371 (524)
T KOG0273|consen  292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG  371 (524)
T ss_pred             EeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence            9999999999999865532211                                          2356789999999999


Q ss_pred             cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----------EEEEeCCCcEEEEECCC
Q 045370          119 QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----------LISASEDKTVCLWDVTR  187 (350)
Q Consensus       119 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------l~s~~~dg~v~iwd~~~  187 (350)
                      .+|++++.|+++++|....          ......+.+|...|+.+.|+|.+           +++++.|++|++||+..
T Consensus       372 ~LLaS~SdD~TlkiWs~~~----------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  372 SLLASCSDDGTLKIWSMGQ----------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             ceEEEecCCCeeEeeecCC----------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            9999999999999999873          44445788999999999999875           89999999999999999


Q ss_pred             ceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          188 RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       188 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      +.+++.+..|..+|.+|+|+|+|+++++|+-++.+
T Consensus       442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V  476 (524)
T KOG0273|consen  442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV  476 (524)
T ss_pred             CceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence            99999999999999999999999999988877544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.8e-30  Score=208.89  Aligned_cols=182  Identities=21%  Similarity=0.333  Sum_probs=161.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|.|+|+.|++|+..|.+.+|+..                           ........++|..+|.++.|++ ++.++
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~---------------------------~fnFEtilQaHDs~Vr~m~ws~-~g~wm  153 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGT---------------------------SFNFETILQAHDSPVRTMKWSH-NGTWM  153 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCc---------------------------eeeHHHHhhhhcccceeEEEcc-CCCEE
Confidence            5799999999999999999999876                           2333345689999999999976 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.+|.|++|+..-..+.....|. ..|++++|+|+...|++++.||.|+|||...          .+..+.+.+|.-
T Consensus       154 iSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~----------~kee~vL~GHgw  223 (464)
T KOG0284|consen  154 ISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM----------PKEERVLRGHGW  223 (464)
T ss_pred             EEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC----------CchhheeccCCC
Confidence            99999999999999876665555544 8999999999999999999999999999984          344447789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .|.+++|+|..  +++|+.|..|++||.++++++.++.+|...|..+.|+|++.+|+++|.|.
T Consensus       224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            99999999987  99999999999999999999999999999999999999999999998873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-28  Score=191.01  Aligned_cols=182  Identities=24%  Similarity=0.297  Sum_probs=157.5

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      -..+++++.|.++.+|++...                      ....+.+.+.+.+|...|..++.++ ++++.++++.|
T Consensus        28 ~~~l~sasrDk~ii~W~L~~d----------------------d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD   84 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSD----------------------DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWD   84 (315)
T ss_pred             CceEEEcccceEEEEEEeccC----------------------ccccCceeeeeeccceEecceEEcc-CCceEEecccc
Confidence            468999999999999999731                      1224667888999999999998855 88999999999


Q ss_pred             CcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec--cCCceEE
Q 045370           87 ATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG--HNGSITA  163 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~  163 (350)
                      +++++||+.+++..+.+ .|...|.+++|++|.+.|++|+.|.+|++|+....           +..+...  +.+.|+|
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHREWVSC  153 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----------EEEEEecCCCcCcEEE
Confidence            99999999998877764 69999999999999999999999999999998732           1112222  3789999


Q ss_pred             EEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          164 LAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       164 ~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      +.|+|+.    |++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.++..
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~  216 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA  216 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE
Confidence            9999984    9999999999999999999999999999999999999999999988877644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=1.8e-29  Score=205.02  Aligned_cols=184  Identities=23%  Similarity=0.310  Sum_probs=164.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|||+...|+|++.||+|+|||..                           .......+.+|.-.|.++.|+| ...++
T Consensus       186 lafSpnDskF~t~SdDg~ikiWdf~---------------------------~~kee~vL~GHgwdVksvdWHP-~kgLi  237 (464)
T KOG0284|consen  186 LAFSPNDSKFLTCSDDGTIKIWDFR---------------------------MPKEERVLRGHGWDVKSVDWHP-TKGLI  237 (464)
T ss_pred             eccCCCCceeEEecCCCeEEEEecc---------------------------CCchhheeccCCCCcceeccCC-cccee
Confidence            6899999999999999999999998                           4555667799999999999977 55689


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++||.|..|++||.++++++.++ .|+..|..+.|+|++++|++++.|..++++|+++          .+.+..+.+|..
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~----------mkEl~~~r~Hkk  307 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT----------MKELFTYRGHKK  307 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH----------hHHHHHhhcchh
Confidence            99999999999999999999884 6999999999999999999999999999999993          445558889999


Q ss_pred             ceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccc
Q 045370          160 SITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      .++++.|+|-.   |.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|.+|++|+.|..+
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~  374 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV  374 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence            99999999976   9999999999999998777777664 799999999999999999987776433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9e-28  Score=213.83  Aligned_cols=187  Identities=31%  Similarity=0.448  Sum_probs=160.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc--ceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS--LLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +.|+++|++|++++.|+.+++|+...                           ..  ....+.+|...|.+++|++ ++.
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~---------------------------~~~~~~~~l~~h~~~v~~~~fs~-d~~  216 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEG---------------------------IKSNLLRELSGHTRGVSDVAFSP-DGS  216 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeeccc---------------------------ccchhhccccccccceeeeEECC-CCc
Confidence            47999999999999999999999962                           22  4555589999999999966 778


Q ss_pred             EEEEEeCCCcEEEEeC-CCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           79 FFVSSSLDATCKVWDL-GSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++++++.|++|++||+ ..+..+..+ .|...|++++|+|+++++++|+.|+.|++||+++          .+....+.+
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----------~~~~~~l~~  286 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----------GECVRKLKG  286 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----------CeEEEeeec
Confidence            9999999999999999 455777775 6999999999999999999999999999999994          455568999


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCce--EEEEeccCCCc--eeEEEEEccCCeEEeeecCccccccc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRV--SIRRFNHKKGV--VTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      |...|++++|++++  |++++.|+.|+|||+.++.  ++..+..+..+  +++++|+|++.++++++.+ +.+.+|
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-~~~~~w  361 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-RTLKLW  361 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC-CeEEEE
Confidence            99999999999999  9999999999999999999  56777655554  9999999999999966655 344444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=6.8e-28  Score=188.01  Aligned_cols=182  Identities=23%  Similarity=0.257  Sum_probs=161.4

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      |-+ ...|+|+|.|.+..+||++                           .+.....+.+|.+.|.++.+.|.+++.+++
T Consensus       153 f~d-D~~ilT~SGD~TCalWDie---------------------------~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  153 FLD-DNHILTGSGDMTCALWDIE---------------------------TGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             EcC-CCceEecCCCceEEEEEcc---------------------------cceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence            444 5578999999999999999                           678888899999999999997778899999


Q ss_pred             EeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370           83 SSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI  161 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (350)
                      |+.|++.++||++.+.+.+.+ .|...|++++|.|+|.-|++|+.|++.++||++.......        ..-..-..+|
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--------ys~~~~~~gi  276 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--------YSHDSIICGI  276 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------eccCcccCCc
Confidence            999999999999999999986 5999999999999999999999999999999996432211        1222334689


Q ss_pred             EEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       162 ~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ++++|+..|  |++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||.-+++|+.|.
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence            999999999  88889999999999999999999999999999999999999999999873

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=180.67  Aligned_cols=181  Identities=15%  Similarity=0.227  Sum_probs=162.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+-||+|.++++.|.+|++|+..                           .+.++.++.+|...|..++... ++..|
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~---------------------------rg~liktYsghG~EVlD~~~s~-Dnskf   74 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPL---------------------------RGALIKTYSGHGHEVLDAALSS-DNSKF   74 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeeccc---------------------------ccceeeeecCCCceeeeccccc-ccccc
Confidence            4688999999999999999999988                           5788999999999999998866 55679


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|..|.+||+.+|+..+.+. |.+.|+.+.|+.+...+++|+.|..+++||.++.        ..+++..+.....
T Consensus        75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--------s~ePiQildea~D  146 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--------SFEPIQILDEAKD  146 (307)
T ss_pred             ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC--------CCCccchhhhhcC
Confidence            999999999999999999999875 8999999999999999999999999999999975        4556667778889


Q ss_pred             ceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .|.++..+...+++|+.||+++.||++.|+....+.+  .||++++|+++++..++++-+
T Consensus       147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             ceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeecc
Confidence            9999999988899999999999999999998877664  589999999999998877665

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=5.1e-27  Score=204.35  Aligned_cols=182  Identities=29%  Similarity=0.443  Sum_probs=159.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +++||||+++|||+.||.|+|||..                           .+.++.++..|+..|+.+.|.. .++.+
T Consensus       356 l~YSpDgq~iaTG~eDgKVKvWn~~---------------------------SgfC~vTFteHts~Vt~v~f~~-~g~~l  407 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAEDGKVKVWNTQ---------------------------SGFCFVTFTEHTSGVTAVQFTA-RGNVL  407 (893)
T ss_pred             EEECCCCcEEEeccCCCcEEEEecc---------------------------CceEEEEeccCCCceEEEEEEe-cCCEE
Confidence            5799999999999999999999998                           6889999999999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEccCC-eEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++.+-||+|+.||+......+++..+.+  ..|++.+|.|..+++|+.|. .|++|++.+++..          ..+.||
T Consensus       408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll----------DiLsGH  477 (893)
T KOG0291|consen  408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL----------DILSGH  477 (893)
T ss_pred             EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee----------ehhcCC
Confidence            9999999999999999999888765554  67888999999999999884 7999999966544          388999


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .++|.+++|+|.+  |++++.|.+|++||+-.. ..+.++. +...+..++|.|+|+-|+++.-++.
T Consensus       478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence            9999999999999  999999999999998754 3455555 6678999999999999998877743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3e-27  Score=189.51  Aligned_cols=194  Identities=18%  Similarity=0.265  Sum_probs=169.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+..|++|++++.|-.+++||.++                          ...+.....+|...|.++.|.|. +.++
T Consensus       156 i~~~a~Gk~l~tcSsDl~~~LWd~~~--------------------------~~~c~ks~~gh~h~vS~V~f~P~-gd~i  208 (406)
T KOG0295|consen  156 ISFDASGKYLATCSSDLSAKLWDFDT--------------------------FFRCIKSLIGHEHGVSSVFFLPL-GDHI  208 (406)
T ss_pred             EEEecCccEEEecCCccchhheeHHH--------------------------HHHHHHHhcCcccceeeEEEEec-CCee
Confidence            57899999999999999999999983                          24566777899999999999884 6899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|.+|+.|++.+|-++..+. |+..|..++.+.||..+++++.|.++++|-+.+..          ....+..|.-
T Consensus       209 lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----------~k~~lR~hEh  278 (406)
T KOG0295|consen  209 LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----------CKAELREHEH  278 (406)
T ss_pred             eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----------hhhhhhcccc
Confidence            999999999999999999999864 88899999999999999999999999999988543          3337778999


Q ss_pred             ceEEEEecCC--------------e---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          160 SITALAFSAS--------------H---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       160 ~i~~~~~~~~--------------~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      +|-|++|.|.              +   +.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||++ ..|++.
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S-caDDkt  357 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS-CADDKT  357 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE-EecCCc
Confidence            9999998653              1   889999999999999999999999999999999999999999995 456666


Q ss_pred             cccccCCccc
Q 045370          223 LKKDRMPSLE  232 (350)
Q Consensus       223 ~~~~~~~~~~  232 (350)
                      +++|++....
T Consensus       358 lrvwdl~~~~  367 (406)
T KOG0295|consen  358 LRVWDLKNLQ  367 (406)
T ss_pred             EEEEEeccce
Confidence            7777665544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.6e-27  Score=181.21  Aligned_cols=194  Identities=22%  Similarity=0.280  Sum_probs=168.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+.+|..|++|+.|+++.+|+++..                         ....-....+|.+.|-.++|.+.....|
T Consensus        26 v~wn~~g~~lasgs~dktv~v~n~e~~-------------------------r~~~~~~~~gh~~svdql~w~~~~~d~~   80 (313)
T KOG1407|consen   26 VAWNCDGTKLASGSFDKTVSVWNLERD-------------------------RFRKELVYRGHTDSVDQLCWDPKHPDLF   80 (313)
T ss_pred             EEEcccCceeeecccCCceEEEEecch-------------------------hhhhhhcccCCCcchhhheeCCCCCcce
Confidence            589999999999999999999999831                         1112234578999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-----------------  143 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------  143 (350)
                      ++++.|.+|++||++.+++.........-.-+.|+|+|.++++++.|..|.+.|.++.+....                 
T Consensus        81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND  160 (313)
T ss_pred             EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence            999999999999999999999988777777899999999999999999999999887542111                 


Q ss_pred             --------------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          144 --------------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       144 --------------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                                    .-...+++..++.|+..+.||.|+|+|  ||+|+.|..+.+||+...-+++.+..+.-||..+.|+
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence                          011345667889999999999999999  9999999999999999999999999999999999999


Q ss_pred             ccCCeEEeeecC
Q 045370          208 RQSSLLSEVSNC  219 (350)
Q Consensus       208 ~~~~~l~~~~~~  219 (350)
                      .+|++||++|.|
T Consensus       241 ~dg~~lASaSED  252 (313)
T KOG1407|consen  241 HDGRMLASASED  252 (313)
T ss_pred             cCcceeeccCcc
Confidence            999999998887

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-27  Score=181.15  Aligned_cols=183  Identities=23%  Similarity=0.284  Sum_probs=157.4

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+++. +.+++++.||++++||+..                          ...++..++.|...|.++.|+...+..
T Consensus        66 V~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~  119 (311)
T KOG0277|consen   66 VAWSENHENQVIAASGDGSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRI  119 (311)
T ss_pred             eeecCCCcceEEEEecCceEEEeccCC--------------------------CCcchhHHHhhhhheEEecccccccee
Confidence            5788865 6888999999999999762                          355788899999999999999988888


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +++++.|++|++|+..-++.+.++ +|...|....|+| .++.+++++.||.+++||++.         .++.+ .+..|
T Consensus       120 ~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~gk~~-~i~ah  189 (311)
T KOG0277|consen  120 FLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------PGKFM-SIEAH  189 (311)
T ss_pred             EEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------CCcee-EEEec
Confidence            999999999999999988888886 4888999999999 678999999999999999984         22222 48889


Q ss_pred             CCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCC-eEEeeecC
Q 045370          158 NGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNC  219 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~  219 (350)
                      ...|.|+.|+.-.   ++||+.|+.|+.||+++ ..++..+.+|.-+|..+.|||... +|++++.|
T Consensus       190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD  256 (311)
T KOG0277|consen  190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD  256 (311)
T ss_pred             cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence            9999999998654   99999999999999998 457888899999999999999864 66666655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=186.23  Aligned_cols=200  Identities=35%  Similarity=0.541  Sum_probs=168.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      |.|+-||.+|+|||.||.|.+|++.                  .++..+......+...+..|+-+|+++...+. -...
T Consensus       129 L~fs~dgs~iiTgskDg~V~vW~l~------------------~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  129 LKFSDDGSHIITGSKDGAVLVWLLT------------------DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR  190 (476)
T ss_pred             EEEeCCCcEEEecCCCccEEEEEEE------------------eecccccCCCccceeeeccCcceeEEEEecCCCccce
Confidence            4699999999999999999999987                  34444444456788889999999999977653 2367


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc------cccccccccee
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED------HFIVGEDQHSV  153 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~  153 (350)
                      ++|+|.|.++++||+..|.++..+..+..+.+++.+|.++.+++|+.+|.|.+.++.......      ........+..
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV  270 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence            999999999999999999999999999999999999999999999999999999887654221      12234455667


Q ss_pred             eeccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          154 LKGHNG--SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       154 ~~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      +.+|.+  .|+|++++-|+  |++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+-.+.+..
T Consensus       271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~  339 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEH  339 (476)
T ss_pred             eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccc
Confidence            889988  99999999999  999999999999999999999999867899999999887655554433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=204.46  Aligned_cols=187  Identities=28%  Similarity=0.416  Sum_probs=159.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||.++++|+.|++|+|||+..                          ....+..+.+|...|++++|++.+ +++
T Consensus       209 ~~fs~d~~~l~s~s~D~tiriwd~~~--------------------------~~~~~~~l~gH~~~v~~~~f~p~g-~~i  261 (456)
T KOG0266|consen  209 VAFSPDGSYLLSGSDDKTLRIWDLKD--------------------------DGRNLKTLKGHSTYVTSVAFSPDG-NLL  261 (456)
T ss_pred             eEECCCCcEEEEecCCceEEEeeccC--------------------------CCeEEEEecCCCCceEEEEecCCC-CEE
Confidence            58999999999999999999999941                          357788899999999999998755 999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|++|++||++++++...+. |.+.|.+++|++++++|++++.|+.|++||+.++...        ....+.++..
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--------~~~~~~~~~~  333 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--------CLKLLSGAEN  333 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--------eeecccCCCC
Confidence            999999999999999999998865 8899999999999999999999999999999976521        1224444444


Q ss_pred             --ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCc---eeEEEEEccCCeEEeeecCccc
Q 045370          160 --SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGV---VTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       160 --~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                        +++++.|+|++  +++++.|+.+++||++.+..+..+.+|...   +.+...++.+.++++++.+..+
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence              59999999999  999999999999999999999999888764   4445567789999977776533

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.1e-26  Score=176.29  Aligned_cols=188  Identities=19%  Similarity=0.235  Sum_probs=156.3

Q ss_pred             CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccce-eeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLL-HYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|- |..|||||.|+.|++|+...+                        ..-.+. ..-.+|+..|.+++|+| .++
T Consensus        20 ~awhp~~g~ilAscg~Dk~vriw~~~~~------------------------~s~~ck~vld~~hkrsVRsvAwsp-~g~   74 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDKAVRIWSTSSG------------------------DSWTCKTVLDDGHKRSVRSVAWSP-HGR   74 (312)
T ss_pred             EEeccCCceEEEeecCCceEEEEecCCC------------------------CcEEEEEeccccchheeeeeeecC-CCc
Confidence            578998 889999999999999998710                        001111 11257999999999966 678


Q ss_pred             EEEEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +|++++.|.++.||.-..+.  ++..+ +|...|.|++|+++|++|++++.|..|.+|.+....       .-+....++
T Consensus        75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-------Efec~aVL~  147 (312)
T KOG0645|consen   75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQ  147 (312)
T ss_pred             EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-------cEEEEeeec
Confidence            99999999999999877554  44444 599999999999999999999999999999988432       233445788


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECC---CceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVT---RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .|...|..+.|+|..  |++++.|.+|++|+-.   ...++.++.+|.+.|.+++|+|.|..|++++.|.
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence            999999999999966  9999999999999766   4678999999999999999999999999777764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=3.2e-26  Score=189.38  Aligned_cols=207  Identities=18%  Similarity=0.268  Sum_probs=169.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccc---------------cccccEEEeeccccccceeeeccccC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD---------------QLDQRLIEMELRSLRSLLHYSLEHKS   65 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~h~~   65 (350)
                      |.|+.+|+||++++.||++.+||..++........+...               ..++.+..+... ...+..++.+|.+
T Consensus       282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g  360 (524)
T KOG0273|consen  282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHG  360 (524)
T ss_pred             EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccC
Confidence            468999999999999999999999764433322222222               122333333332 3566778889999


Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCC---------cEEEEEccCCeEEEEeC
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGE---------QLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~  135 (350)
                      +|.++.|++ .+.+|++++.|+++++|.+........+ .|...|..+.|+|.|         ..+++++.|++|++||+
T Consensus       361 ~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  361 EVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            999999976 6789999999999999999888877764 588899999999854         47899999999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      .          ...++..+..|+.+|++++|+|++  +++|+.||.|++|+.++++.++.+.+ .+.|..|+|+.+|.+|
T Consensus       440 ~----------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  440 E----------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKL  508 (524)
T ss_pred             c----------CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEE
Confidence            9          455666888999999999999999  99999999999999999999999985 5679999999999998


Q ss_pred             EeeecCc
Q 045370          214 SEVSNCQ  220 (350)
Q Consensus       214 ~~~~~~~  220 (350)
                      ..+..++
T Consensus       509 ~~~~sd~  515 (524)
T KOG0273|consen  509 GACASDG  515 (524)
T ss_pred             EEEecCC
Confidence            8666554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=1.4e-27  Score=197.93  Aligned_cols=233  Identities=21%  Similarity=0.307  Sum_probs=187.4

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      +.|.| .+.+|++|+.|+.|+||++..                          .+.+++++.+|..+|.+++|+. .+..
T Consensus       220 i~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~~s~-~g~~  272 (503)
T KOG0282|consen  220 IQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDASFNN-CGTS  272 (503)
T ss_pred             hhhccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhhccc-cCCe
Confidence            34667 788999999999999999983                          4788999999999999999966 6677


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |++++.|+.|++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.          +..+..|-
T Consensus       273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----------vqeYd~hL  342 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----------VQEYDRHL  342 (503)
T ss_pred             eeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------HHHHHhhh
Confidence            999999999999999999999999999999999999988 8899999999999999996553          33667788


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccccCCc-----
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS-----  230 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~-----  230 (350)
                      +.|..+.|-+++  +++++.|++++||+.+.+..+..+. .+.....++..+|++.++++-+-+..+.......+     
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            999999999999  9999999999999999887766553 23345677888888888887776655443332111     


Q ss_pred             --------cccCCCCccccccceEEeeccccCCCCcccccccccchhhHhh
Q 045370          231 --------LEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHM  273 (350)
Q Consensus       231 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (350)
                              ...+.....+++++.+++   .|+.+|.+.+|.+.+...+...
T Consensus       423 kK~feGh~vaGys~~v~fSpDG~~l~---SGdsdG~v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFSPDGRTLC---SGDSDGKVNFWDWKTTKLVSKL  470 (503)
T ss_pred             hhhhcceeccCceeeEEEcCCCCeEE---eecCCccEEEeechhhhhhhcc
Confidence                    123444556777777777   6667788777777666555443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2.2e-26  Score=199.90  Aligned_cols=189  Identities=26%  Similarity=0.386  Sum_probs=160.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      .+|-+|+|||.|.++++|.+++                       ......++....+|+..|.+++++.....+|+++|
T Consensus       375 ~~g~llat~sKD~svilWr~~~-----------------------~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS  431 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNN-----------------------NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS  431 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecC-----------------------CcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence            4677999999999999998842                       11134456667899999999999877779999999


Q ss_pred             CCCcEEEEeCCCCce----EEE------EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           85 LDATCKVWDLGSGIL----IQT------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~----~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .|+++++|++...+.    ...      ..|...|++++++|+..+|++||.|.+.++|++...          .....+
T Consensus       432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----------~l~~vL  501 (775)
T KOG0319|consen  432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----------RLLGVL  501 (775)
T ss_pred             CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------eEEEEe
Confidence            999999999986211    111      238889999999999999999999999999999943          333489


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370          155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD  226 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~  226 (350)
                      .+|...|.|+.|+|..  ++|+|.|++|+||.+.+..+++++.+|...|..+.|-.+++.|++++.++  ++|.+.
T Consensus       502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            9999999999999986  99999999999999999999999999999999999999999999887775  444443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.5e-26  Score=181.11  Aligned_cols=188  Identities=21%  Similarity=0.291  Sum_probs=155.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+|+|.+||||+.|..|.+|++..                          .......+.+|.+.|..+.|.+ +++.+
T Consensus        53 ~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------------------dceN~~~lkgHsgAVM~l~~~~-d~s~i  105 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDRAIVLWNVYG--------------------------DCENFWVLKGHSGAVMELHGMR-DGSHI  105 (338)
T ss_pred             EEECCCCCeEeecCCcceEEEEeccc--------------------------cccceeeeccccceeEeeeecc-CCCEE
Confidence            47999999999999999999999762                          2344566779999999999976 77889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++++.|.+|+.||+++|+..+.+. |..-++++.-+.-| .++.+++.||++++||++......          .+ ...
T Consensus       106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----------t~-~~k  174 (338)
T KOG0265|consen  106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----------TF-ENK  174 (338)
T ss_pred             EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----------cc-ccc
Confidence            999999999999999999998865 77778888754444 467788999999999999543322          11 224


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccc
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKD  226 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~  226 (350)
                      -.++++.|...+  +.+|+-|+.|++||++.+..++.+.+|..+|+.+..+|+|.++.+-+=+  .++|.+.
T Consensus       175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence            578999999877  9999999999999999999999999999999999999999999865544  3444444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-26  Score=204.45  Aligned_cols=248  Identities=20%  Similarity=0.231  Sum_probs=173.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccc--------------------ccc---------cc---cccccEEEe
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSEL--------------------MHH---------SD---QLDQRLIEM   48 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~~~---------~~---~~~~~~~~~   48 (350)
                      |.||+||+|||+||.||.|+||.+..........                    ...         ..   ......+..
T Consensus       273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~  352 (712)
T KOG0283|consen  273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL  352 (712)
T ss_pred             EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence            5799999999999999999999987511100000                    000         00   000000000


Q ss_pred             -eccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEcc
Q 045370           49 -ELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSI  126 (350)
Q Consensus        49 -~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  126 (350)
                       ...-...++..+.+|.+.|.++.|+.  ..+|++++.|.+|++|++....++..+.|.+-|+||+|+| |.++|++|+-
T Consensus       353 ~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  353 KAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             ccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence             11112456678899999999999964  4689999999999999999999999999999999999999 8899999999


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--C-----
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--K-----  197 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~-----  197 (350)
                      ||.|++|++...+..           .+..-..-|++++|.|+|  .+.|+.+|.+++|+....+.......  |     
T Consensus       431 D~KvRiWsI~d~~Vv-----------~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVV-----------DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             ccceEEeecCcCeeE-----------eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            999999999854433           333334789999999999  89999999999999998877665532  1     


Q ss_pred             -CCceeEEEEEccCC-eEEeeecC--ccccccccCCccc--------cCCCCccccccceEEeeccccCCCCccccccc
Q 045370          198 -KGVVTNLVVIRQSS-LLSEVSNC--QRKLKKDRMPSLE--------KYPQLNSLSMEMVILLQSCFFNKDDQCSINIR  264 (350)
Q Consensus       198 -~~~v~~l~~~~~~~-~l~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  264 (350)
                       ...|+++.|.|... .++++++|  .+++...+.....        .-....+++.++..++..   ..|..+.+|-.
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~---seDs~VYiW~~  575 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA---SEDSWVYIWKN  575 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe---ecCceEEEEeC
Confidence             22799999998754 34446665  4555542111111        112334455566666633   35666666654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.3e-26  Score=186.78  Aligned_cols=208  Identities=25%  Similarity=0.297  Sum_probs=165.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+..++|..+++|+.|.+|+||+.++......+  ..+......-........+.++..+.+|.++|.++.|.+  ...+
T Consensus       199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E--~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~  274 (423)
T KOG0313|consen  199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE--SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI  274 (423)
T ss_pred             EEecCCCCeEEeecccceeeecccCCCcccccc--ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence            345789999999999999999994421111100  000000001111112234667888999999999999966  4679


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++++.|.+|+.||+.++.....+.....+.++.++|..++|++|+.|..+++||.+++.       ..-....+.+|.+.
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-------gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-------GSVVSQSLIGHKNW  347 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-------CceeEEeeecchhh
Confidence            99999999999999999999999999999999999999999999999999999999763       22233478899999


Q ss_pred             eEEEEecCCe---EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          161 ITALAFSASH---LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      |.++.|+|..   |++|+.|+++++||+|+.+ +++.+.+|...|.++.|+. +.++++|+.|.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence            9999999987   9999999999999999877 9999999999999999974 45677677764

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1e-25  Score=200.13  Aligned_cols=196  Identities=15%  Similarity=0.224  Sum_probs=150.6

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+| ++++|++|+.||+|++||+......                    ......+..+.+|...|.+++|+|....+
T Consensus        81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~i  140 (493)
T PTZ00421         81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHTKKVGIVSFHPSAMNV  140 (493)
T ss_pred             EEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence            57999 8899999999999999999731100                    00123456778999999999998866679


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |++|+.|++|++||+.+++.+..+. |...|.+++|+|++.+|++++.|+.|++||++++          ..+..+.+|.
T Consensus       141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----------~~v~tl~~H~  210 (493)
T PTZ00421        141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----------TIVSSVEAHA  210 (493)
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----------cEEEEEecCC
Confidence            9999999999999999998877765 8889999999999999999999999999999954          3334666776


Q ss_pred             Cc-eEEEEecCCe--EEEEe----CCCcEEEEECCCce-EEEEeccC-CCceeEEEEEccCCeEEeeecCccccccc
Q 045370          159 GS-ITALAFSASH--LISAS----EDKTVCLWDVTRRV-SIRRFNHK-KGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       159 ~~-i~~~~~~~~~--l~s~~----~dg~v~iwd~~~~~-~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +. +..+.|.+++  +++++    .|+.|++||+++.. ++.....+ ...+....|++++.+|++++..+..+++|
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw  287 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF  287 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence            54 4467788876  55543    47899999998754 44433323 34566677899999998887544444444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.2e-25  Score=214.42  Aligned_cols=187  Identities=21%  Similarity=0.324  Sum_probs=160.9

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+| ++.+|++++.||+|++||+.                           ....+..+.+|.+.|++++|++.++.+
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~---------------------------~~~~~~~~~~H~~~V~~l~~~p~~~~~  590 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVA---------------------------RSQLVTEMKEHEKRVWSIDYSSADPTL  590 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECC---------------------------CCeEEEEecCCCCCEEEEEEcCCCCCE
Confidence            35666 47899999999999999998                           456667778999999999998878889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEc-CCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFH-PGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |++|+.|++|++||+.++..+..+.+...+.++.|+ +++.+|++|+.||.|++||++...         .....+.+|.
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---------~~~~~~~~h~  661 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---------LPLCTMIGHS  661 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---------ccceEecCCC
Confidence            999999999999999999988888777889999995 478999999999999999998532         2334667899


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCC------ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTR------RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ..|.++.|.+.. +++++.|+.|++||++.      ..++..+.+|...+..++|+|++.+|++|+.|+.+.
T Consensus       662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~  733 (793)
T PLN00181        662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF  733 (793)
T ss_pred             CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEE
Confidence            999999998655 99999999999999974      357888889999999999999999999888776443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4e-26  Score=183.11  Aligned_cols=182  Identities=24%  Similarity=0.267  Sum_probs=164.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|-|.|.++++++.|.+|+.|++.                           ++.++..+.+|...|..+... .++.++
T Consensus       199 V~f~P~gd~ilS~srD~tik~We~~---------------------------tg~cv~t~~~h~ewvr~v~v~-~DGti~  250 (406)
T KOG0295|consen  199 VFFLPLGDHILSCSRDNTIKAWECD---------------------------TGYCVKTFPGHSEWVRMVRVN-QDGTII  250 (406)
T ss_pred             EEEEecCCeeeecccccceeEEecc---------------------------cceeEEeccCchHhEEEEEec-CCeeEE
Confidence            4678999999999999999999999                           688999999999999999874 488999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCC---------------CcEEEEEccCCeEEEEeCCcccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPG---------------EQLLFAGSIDGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~  144 (350)
                      ++|+.|.+|++|-+.++++...+ .|..+|.|++|.|.               +.++.+++.|++|++||+.+       
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-------  323 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-------  323 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-------
Confidence            99999999999999999887775 48889999999762               24899999999999999995       


Q ss_pred             ccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                         ...+.++.+|...|..++|+|.|  |+++..|+++++||++++++.+.+..|..-+++++|+.+..++++|+-+.
T Consensus       324 ---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  324 ---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             ---CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence               45556899999999999999999  99999999999999999999999999999999999999999999887663

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.2e-26  Score=198.10  Aligned_cols=226  Identities=19%  Similarity=0.233  Sum_probs=178.1

Q ss_pred             CeecCCCCEEEEEeCC-CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDD-GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+..|.+||.|+.. |.+-||++.                           ....+...++|...+.+++++| ++.+
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWq---------------------------sEsYVlKQQgH~~~i~~l~YSp-Dgq~  364 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQ---------------------------SESYVLKQQGHSDRITSLAYSP-DGQL  364 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEee---------------------------ccceeeeccccccceeeEEECC-CCcE
Confidence            4678889999988864 899999999                           5667778899999999999965 8899


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc-
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH-  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-  157 (350)
                      ++||+.||.|+|||..++-|..++. |...|+.+.|+..|+.+++.+-||+|+.||+....          ..+++... 
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr----------NfRTft~P~  434 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR----------NFRTFTSPE  434 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc----------eeeeecCCC
Confidence            9999999999999999999999975 89999999999999999999999999999998433          33344332 


Q ss_pred             CCceEEEEecCCe--EEEEeCCC-cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccccCCcc-
Q 045370          158 NGSITALAFSASH--LISASEDK-TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKDRMPSL-  231 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~~~~~~-  231 (350)
                      +....|++..|.|  +.+|+.|. .|.+|++.+|+.+..+.+|.+||.+++|+|.+..|+++|.|  .++|.+..-... 
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence            3456789999999  44555554 69999999999999999999999999999999999999988  456665532111 


Q ss_pred             -----ccCCCCccccccceEEeeccccCCCCcccccccccc
Q 045370          232 -----EKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTK  267 (350)
Q Consensus       232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (350)
                           ..-....++.+++..++...   -+|.+.++....+
T Consensus       515 Etl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~  552 (893)
T KOG0291|consen  515 ETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEA  552 (893)
T ss_pred             eeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhc
Confidence                 12233445666666665433   2566555544443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=4.2e-26  Score=178.64  Aligned_cols=196  Identities=21%  Similarity=0.263  Sum_probs=152.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|.+|++.++++|.|.+|+.||++                           ++...+...+|..-|+.+.-...+..++
T Consensus        96 l~~~~d~s~i~S~gtDk~v~~wD~~---------------------------tG~~~rk~k~h~~~vNs~~p~rrg~~lv  148 (338)
T KOG0265|consen   96 LHGMRDGSHILSCGTDKTVRGWDAE---------------------------TGKRIRKHKGHTSFVNSLDPSRRGPQLV  148 (338)
T ss_pred             eeeccCCCEEEEecCCceEEEEecc---------------------------cceeeehhccccceeeecCccccCCeEE
Confidence            4689999999999999999999999                           6888889999999999998555556788


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-----------------  143 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------  143 (350)
                      .+|+.|+++++||+++...++++..+.+++++.|...+..+++|+-|+.|++||++.......                 
T Consensus       149 ~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g  228 (338)
T KOG0265|consen  149 CSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG  228 (338)
T ss_pred             EecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence            999999999999999999999998899999999999999999999999999999975431110                 


Q ss_pred             -------------------cccccccceeeeccC----CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370          144 -------------------FIVGEDQHSVLKGHN----GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK  198 (350)
Q Consensus       144 -------------------~~~~~~~~~~~~~~~----~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~  198 (350)
                                         +......+..+.+|.    ......+|+|++  +.+|+.|..+++||......+..+.+|.
T Consensus       229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~  308 (338)
T KOG0265|consen  229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY  308 (338)
T ss_pred             CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence                               001111122233321    122334566665  5566667777777777777778888888


Q ss_pred             CceeEEEEEccCCeEEeeecCcccc
Q 045370          199 GVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       199 ~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      +.|.+++|+|...+|.+++.|.+++
T Consensus       309 gsvn~~~Fhp~e~iils~~sdk~i~  333 (338)
T KOG0265|consen  309 GSVNEVDFHPTEPIILSCSSDKTIY  333 (338)
T ss_pred             eeEEEeeecCCCcEEEEeccCceeE
Confidence            8999999999999888888776554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.1e-26  Score=182.81  Aligned_cols=209  Identities=22%  Similarity=0.325  Sum_probs=163.9

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|||||.++|||+.|..|+|.|++.......         ...+..-+.......++++..|.++|+++.|+| ...+|+
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~---------~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILi  188 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSK---------PKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILI  188 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcc---------hhhhccCCcccCCceEeehhhccCcccceeecc-hhheEE
Confidence            6999999999999999999999984221110         001111111122467889999999999999977 568999


Q ss_pred             EEeCCCcEEEEeCCCCceEE---EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           82 SSSLDATCKVWDLGSGILIQ---TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +|+.|++|+++|+......+   .+....+|.++.|+|.|.++++|..-..+++||+.+..+.....       --.+|.
T Consensus       189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-------Pd~qht  261 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-------PDDQHT  261 (430)
T ss_pred             eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-------cccccc
Confidence            99999999999998654333   35567789999999999999999999999999999766543211       224789


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCC-ceeEEEEEccCCeEEeeecCccccccccC
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKG-VVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~-~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +.|+++.+++.+  .++|+.||.|++||--+++++.++. +|.+ .|.+..|..+|+++++.+- +.++++|.+
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi  334 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEI  334 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeee
Confidence            999999999999  9999999999999999999999985 4544 7999999999999995554 445555544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=185.64  Aligned_cols=186  Identities=19%  Similarity=0.219  Sum_probs=161.1

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|+|++ ..|++|+.|+.+++||+.                           .......+.+|++.|.|.+|+|.+++.+
T Consensus       117 ~f~~~d~t~l~s~sDd~v~k~~d~s---------------------------~a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen  117 KFSPQDNTMLVSGSDDKVVKYWDLS---------------------------TAYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             EecccCCeEEEecCCCceEEEEEcC---------------------------CcEEEEEecCCcceeEeeccccCCCeEE
Confidence            478865 578899999999999998                           3344557899999999999999989999


Q ss_pred             EEEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +|||+||.|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+.++         .+.......|..
T Consensus       170 vtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G---------~qll~~~~~H~K  239 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTG---------GQLLTSMFNHNK  239 (487)
T ss_pred             EecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCC---------ceehhhhhcccc
Confidence            99999999999999987 7777899999999999999999999988 468999999854         223334555999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .|+|+++..++  |++|+-|+.|++||+.+.+.++.+. ..++|.+++.+|+++.++.|-.++.+...
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence            99999999977  9999999999999999999999988 67999999999999999988888655544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=5.5e-25  Score=169.79  Aligned_cols=195  Identities=18%  Similarity=0.200  Sum_probs=168.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|+.+|.+|++++.|.++.||-..                           .+..+.++.+|++.|+|+...- +...+
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~---------------------------nGerlGty~GHtGavW~~Did~-~s~~l   67 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSL---------------------------NGERLGTYDGHTGAVWCCDIDW-DSKHL   67 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEec---------------------------CCceeeeecCCCceEEEEEecC-Cccee
Confidence            4688999999999999999999775                           4788899999999999998754 66889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-----CCeEEEEeCCccccccccccccccceeee
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-----DGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +||+.|.++++||+.+|+++..++.+.+|..+.|+++|++++....     .+.|.++|++....   .....++...+.
T Consensus        68 iTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~---~~~s~ep~~kI~  144 (327)
T KOG0643|consen   68 ITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS---DIDSEEPYLKIP  144 (327)
T ss_pred             eeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh---hhcccCceEEec
Confidence            9999999999999999999999999999999999999998887754     47899999985432   123456677888


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD  226 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~  226 (350)
                      .+...++.+.|.|-+  |++|.+||.|.+||+++++ .+.....|...|+.++++|+..++++++.|.  ++|...
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence            899999999999988  9999999999999999975 5555678999999999999999999998873  444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3e-26  Score=186.71  Aligned_cols=204  Identities=17%  Similarity=0.212  Sum_probs=155.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.||++|+||||++.|.+..+|++..                        ...-....++.+|..+|..++|+| +.+++
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~------------------------d~~~kl~~tlvgh~~~V~yi~wSP-DdryL  284 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVY------------------------DVHFKLKKTLVGHSQPVSYIMWSP-DDRYL  284 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEec------------------------CcceeeeeeeecccCceEEEEECC-CCCeE
Confidence            46999999999999999999999872                        112345778899999999999977 56789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc-------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI-------------  145 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------  145 (350)
                      ++|+.|..+.+||+.+|.....+++.  ..+.+++|.|||..+++|+.|+.+..||+..........             
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence            99999999999999999998887755  789999999999999999999999999986432100000             


Q ss_pred             ------------------------------------------------------------cccccceeeeccCCceEEE-
Q 045370          146 ------------------------------------------------------------VGEDQHSVLKGHNGSITAL-  164 (350)
Q Consensus       146 ------------------------------------------------------------~~~~~~~~~~~~~~~i~~~-  164 (350)
                                                                                  .....++.+.||...-.-+ 
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence                                                                        0000111233443322222 


Q ss_pred             -EecC--Ce-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          165 -AFSA--SH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       165 -~~~~--~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                       +|-.  +. +++|++|+.|+||+..+++++..+.+|...|.+++|+|....+++..+|+..+++|...
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence             2221  12 89999999999999999999999999999999999999987655566666666666544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=9.4e-26  Score=185.94  Aligned_cols=200  Identities=21%  Similarity=0.296  Sum_probs=164.8

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|++.. .+|++|+.|++|++||+.......                    ....+...+.+|.+.|..++|++.+..+
T Consensus       183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~l  242 (422)
T KOG0264|consen  183 LSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDL  242 (422)
T ss_pred             cccccccceeEeeccCCCcEEEEeccccccCC--------------------ccccceEEeecCCcceehhhccccchhh
Confidence            4677754 479999999999999998422211                    1234566788999999999999988999


Q ss_pred             EEEEeCCCcEEEEeCCC--CceEEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           80 FVSSSLDATCKVWDLGS--GILIQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~--~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      |++++.|+.+.|||+++  .++... ..|.+++.|++|+| ++..||+|+.|++|.+||+|+.         ..+...+.
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---------~~~lh~~e  313 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---------NKPLHTFE  313 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---------ccCceecc
Confidence            99999999999999995  333333 45899999999999 5678899999999999999974         33667899


Q ss_pred             ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc--------------eEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRR--------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      +|...|.++.|+|..   |++++.|+.+.|||+..-              +++..-.+|...|..+.|+|+..++++...
T Consensus       314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            999999999999987   999999999999999641              234555689999999999999999888888


Q ss_pred             CccccccccCC
Q 045370          219 CQRKLKKDRMP  229 (350)
Q Consensus       219 ~~~~~~~~~~~  229 (350)
                      ++.++-+|.+.
T Consensus       394 eDN~LqIW~~s  404 (422)
T KOG0264|consen  394 EDNILQIWQMA  404 (422)
T ss_pred             CCceEEEeecc
Confidence            88888888664

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=7.8e-25  Score=183.58  Aligned_cols=215  Identities=19%  Similarity=0.229  Sum_probs=166.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccc-cccccccccccccccccEEEee------------------ccccccceeeecc
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRL-LKQTSELMHHSDQLDQRLIEME------------------LRSLRSLLHYSLE   62 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~   62 (350)
                      .|||.|.|+|+|...|+|+|||.... .....+.....+++...-|..+                  .-..+..+..+.+
T Consensus        66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G  145 (603)
T KOG0318|consen   66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG  145 (603)
T ss_pred             EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence            58999999999999999999998752 1222222222333222111111                  1112344556789


Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      |...|+++.|-|...-.++||+.|++|.+|+=.-.+...++ .|..-|.|+.|+|||..+++++.||.+.+||=.+++..
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence            99999999998877788999999999999996555555554 47889999999999999999999999999998865433


Q ss_pred             cccccccccceeee---ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE------------------------
Q 045370          142 DHFIVGEDQHSVLK---GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIR------------------------  192 (350)
Q Consensus       142 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~------------------------  192 (350)
                                ..+.   +|.+.|.++.|+||+  +++++.|.+++|||+.+++++.                        
T Consensus       226 ----------g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt  295 (603)
T KOG0318|consen  226 ----------GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT  295 (603)
T ss_pred             ----------EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence                      3444   899999999999999  9999999999999998764432                        


Q ss_pred             -------------------EeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          193 -------------------RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       193 -------------------~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                                         .+.+|...|+++..+|++++|++++.|+.+..+.
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence                               2345788999999999999999999998887665

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.9e-26  Score=197.28  Aligned_cols=198  Identities=18%  Similarity=0.226  Sum_probs=166.8

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +++..+ .+|+++|.|+++++|++........                  ............|...|++++..| +..++
T Consensus       418 a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------------------~~~~~~~~t~~aHdKdIN~Vaia~-ndkLi  478 (775)
T KOG0319|consen  418 AGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------------------PIVLTCRYTERAHDKDINCVAIAP-NDKLI  478 (775)
T ss_pred             eecccCccEEEEecCCceEEEecCCCcccccc------------------cceehhhHHHHhhcccccceEecC-CCceE
Confidence            444444 6899999999999999983100000                  001111223468999999999966 66899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +|||.|++.++|++........+ +|...|.|+.|+|..+.++++|.|++|+||.+.++.          +..++.||..
T Consensus       479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----------ClkT~eGH~~  548 (775)
T KOG0319|consen  479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----------CLKTFEGHTS  548 (775)
T ss_pred             EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----------eeeeecCccc
Confidence            99999999999999988888886 499999999999999999999999999999999654          4448999999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .|..+.|-.++  |++++.||-+++|++.++.++.++..|...|++++.+|...++++|++|+++..+.+.
T Consensus       549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            99999999888  9999999999999999999999999999999999999999999999999888766644

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=3.9e-26  Score=174.58  Aligned_cols=188  Identities=16%  Similarity=0.242  Sum_probs=160.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+.|.++|+||+.+..++|||+++                          ...+...+.+|.+.|..+.|+..+ +.+
T Consensus       106 ~af~~ds~~lltgg~ekllrvfdln~--------------------------p~App~E~~ghtg~Ir~v~wc~eD-~~i  158 (334)
T KOG0278|consen  106 VAFSQDSNYLLTGGQEKLLRVFDLNR--------------------------PKAPPKEISGHTGGIRTVLWCHED-KCI  158 (334)
T ss_pred             EEecccchhhhccchHHHhhhhhccC--------------------------CCCCchhhcCCCCcceeEEEeccC-ceE
Confidence            58999999999999999999999984                          344556678999999999999865 567


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++.+.|++|++||.+++..++++..+.+|+++.++++|++|.++. .+.|.+||..+.......           .-+..
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~-----------k~P~n  226 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY-----------KMPCN  226 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec-----------cCccc
Confidence            777999999999999999999999999999999999998877765 578999999976544322           23367


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      |.+..++|+.  +++|++|..++.||..++..+..+ .+|.++|.|+.|+|+|...++||.|+. +++|..
T Consensus       227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt  296 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQT  296 (334)
T ss_pred             cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEe
Confidence            8888999987  999999999999999999999886 799999999999999999998887753 334433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=191.95  Aligned_cols=186  Identities=22%  Similarity=0.228  Sum_probs=166.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+.+|.-.+++|+|.|-+|++||++.                          .-.+...+.+|...|.+++|+|.+.+.+
T Consensus       103 iavHPt~P~vLtsSDDm~iKlW~we~--------------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntF  156 (794)
T KOG0276|consen  103 IAVHPTLPYVLTSSDDMTIKLWDWEN--------------------------EWACEQTFEGHEHYVMQVAFNPKDPNTF  156 (794)
T ss_pred             eeecCCCCeEEecCCccEEEEeeccC--------------------------ceeeeeEEcCcceEEEEEEecCCCccce
Confidence            46789999999999999999999993                          3456778899999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCC--cEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGE--QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++++-|++|+||.+.+..+..++ .|...|+|++|-+.|  .+|++|+.|..|++||..+          ..++.++.+|
T Consensus       157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt----------k~CV~TLeGH  226 (794)
T KOG0276|consen  157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT----------KSCVQTLEGH  226 (794)
T ss_pred             eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------HHHHHHhhcc
Confidence            99999999999999998888876 499999999998844  6999999999999999994          4556689999


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      ...|.++.|+|.-  +++|++||+++||...+.+...++.-....+++++-.+.+..++.|...+.+
T Consensus       227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence            9999999999998  9999999999999999999888888777899999999998888877766543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-25  Score=198.03  Aligned_cols=199  Identities=23%  Similarity=0.334  Sum_probs=167.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|++.+++|||.|-.|+||+..                           ..+++.++.+|-+.|..+.|++ .-.++
T Consensus        57 v~FH~~qplFVSGGDDykIkVWnYk---------------------------~rrclftL~GHlDYVRt~~FHh-eyPWI  108 (1202)
T KOG0292|consen   57 VDFHPTQPLFVSGGDDYKIKVWNYK---------------------------TRRCLFTLLGHLDYVRTVFFHH-EYPWI  108 (1202)
T ss_pred             eeecCCCCeEEecCCccEEEEEecc---------------------------cceehhhhccccceeEEeeccC-CCceE
Confidence            5899999999999999999999999                           6888999999999999998866 66899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc---------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF---------------  144 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------  144 (350)
                      +++|.|.+|+||+..+++++..+ +|...|.|..|+|....++++|-|-+|++||+.........               
T Consensus       109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            99999999999999999999985 58899999999999999999999999999998643321110               


Q ss_pred             -cc---ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEee
Q 045370          145 -IV---GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       145 -~~---~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                       ..   ..-....+.||...|+-++|+|..  +++|+.|..|++|.++.-+  .+.++.+|.+.|+++-|+|...++++.
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn  268 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN  268 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence             01   111224678999999999999987  9999999999999997654  355678999999999999999999966


Q ss_pred             ecCccccccccC
Q 045370          217 SNCQRKLKKDRM  228 (350)
Q Consensus       217 ~~~~~~~~~~~~  228 (350)
                      +.| +.+++|++
T Consensus       269 sED-ksirVwDm  279 (1202)
T KOG0292|consen  269 SED-KSIRVWDM  279 (1202)
T ss_pred             CCC-ccEEEEec
Confidence            655 45555544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=170.14  Aligned_cols=169  Identities=23%  Similarity=0.358  Sum_probs=135.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|..||++++|||+||+++|||++.                            ........|..+|+++..+| +...|
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~----------------------------~~~qR~~~~~spVn~vvlhp-nQteL  139 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRS----------------------------LSCQRNYQHNSPVNTVVLHP-NQTEL  139 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccC----------------------------cccchhccCCCCcceEEecC-CcceE
Confidence            46899999999999999999999982                            22333456778888887755 45567


Q ss_pred             EEEeCCCcEEEEeCCCCceE-------------------------------------------------EEE-ecCCcee
Q 045370           81 VSSSLDATCKVWDLGSGILI-------------------------------------------------QTQ-VYPQAVT  110 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~-------------------------------------------------~~~-~~~~~v~  110 (350)
                      ++|..+|.|++||+....+.                                                 ..+ .|.+.+.
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence            78888888888887543111                                                 111 2456688


Q ss_pred             EEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc
Q 045370          111 AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR  188 (350)
Q Consensus       111 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~  188 (350)
                      .+.++|++++|++++.|.+++||+...+         .+....+++|...+...+||.++  |++|+.|+.+++||+..+
T Consensus       220 ~C~lSPd~k~lat~ssdktv~iwn~~~~---------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSSDKTVKIWNTDDF---------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             EEEECCCCcEEEeecCCceEEEEecCCc---------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence            8899999999999999999999998864         12223778999999999999999  999999999999999999


Q ss_pred             eEEEEeccCCCceeEEEEE
Q 045370          189 VSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       189 ~~~~~~~~~~~~v~~l~~~  207 (350)
                      +.+..+.+|..+..+++..
T Consensus       291 k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  291 KEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ceeeecCCcccccEEEEee
Confidence            9999999998888887764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.3e-26  Score=182.92  Aligned_cols=254  Identities=16%  Similarity=0.197  Sum_probs=182.2

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      ..++||+.||.|+|||+.                           ...+...+.+|.+.|.++++..   ..+++++.|.
T Consensus        80 s~~aSGs~DG~VkiWnls---------------------------qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK  129 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLS---------------------------QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDK  129 (433)
T ss_pred             hhhhccccCceEEEEehh---------------------------hhhhhheeecccCceeeEEecc---cceEEecCCc
Confidence            568999999999999999                           5788889999999999999854   5588999999


Q ss_pred             cEEEEeCCC---------------------------CceEEE-----------Ee-cCCceeEEEEcCCCc-EEEEEccC
Q 045370           88 TCKVWDLGS---------------------------GILIQT-----------QV-YPQAVTAIAFHPGEQ-LLFAGSID  127 (350)
Q Consensus        88 ~v~vwd~~~---------------------------~~~~~~-----------~~-~~~~v~~~~~~~~~~-~l~~~~~d  127 (350)
                      +|+.|.+..                           |+.+..           +. ..+.|.++.|+|... .|+++..|
T Consensus       130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            999997432                           111111           11 124578888999665 56667799


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEE
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNL  204 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l  204 (350)
                      +.|.+||++..........           ...-+.|+|+|+.  +++|++|..++.||++.. .++....+|.++|.++
T Consensus       210 rsIvLyD~R~~~Pl~KVi~-----------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV  278 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVIL-----------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV  278 (433)
T ss_pred             CceEEEecccCCccceeee-----------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence            9999999997654433222           1345779999977  999999999999999984 5677788999999999


Q ss_pred             EEEccCCeEEeeecC--ccccccccCCccc-------cCCCCccccccceEEeeccccCCCCcccccccccchhhHhhhh
Q 045370          205 VVIRQSSLLSEVSNC--QRKLKKDRMPSLE-------KYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSE  275 (350)
Q Consensus       205 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  275 (350)
                      +|||.|+-+++||.|  .+++......+-.       ..+.+..++.+.+.++   .|+.++.+.+|-..+.        
T Consensus       279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~---SGSdd~nvRlWka~As--------  347 (433)
T KOG0268|consen  279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII---SGSDDGNVRLWKAKAS--------  347 (433)
T ss_pred             ccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE---ecCCCcceeeeecchh--------
Confidence            999999999988887  4555544332221       1244566777777776   5667888888876663        


Q ss_pred             hhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045370          276 LQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQ  314 (350)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (350)
                       ++.|.....|...-...+.+++..+...++.++-++.+
T Consensus       348 -eklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~  385 (433)
T KOG0268|consen  348 -EKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRH  385 (433)
T ss_pred             -hhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhcc
Confidence             33333334444444455555555555566666666655

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.7e-25  Score=187.98  Aligned_cols=230  Identities=17%  Similarity=0.178  Sum_probs=191.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|+|...+++++-..|.|.|||.+                           +...+..+.-...+|.+..|.. ..+++
T Consensus        19 Vd~HPtePw~la~LynG~V~IWnye---------------------------tqtmVksfeV~~~PvRa~kfia-RknWi   70 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNGDVQIWNYE---------------------------TQTMVKSFEVSEVPVRAAKFIA-RKNWI   70 (794)
T ss_pred             eecCCCCceEEEeeecCeeEEEecc---------------------------cceeeeeeeecccchhhheeee-ccceE
Confidence            5789999999999999999999999                           5777888888889999999977 66899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|..|+||+++++..+..+. |++-|++++.||...++++++.|-.|++||...         .-.+...+.+|..
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---------~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---------EWACEQTFEGHEH  141 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---------ceeeeeEEcCcce
Confidence            999999999999999999998875 999999999999999999999999999999884         3445568999999


Q ss_pred             ceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC--CeEEeeecCccccccccCCcc---
Q 045370          160 SITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQRKLKKDRMPSL---  231 (350)
Q Consensus       160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~---  231 (350)
                      .|.+++|+|..   +++++-|++|+||.+.+..+..++.+|...|.+++|-+-|  .+|++ +.|+..+++|+...-   
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-gaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-GADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-cCCCceEEEeecchHHHH
Confidence            99999999976   9999999999999999999999999999999999998765  68884 456666677754332   


Q ss_pred             ------ccCCCCccccccceEEeeccccCCCCcccccccccchhhH
Q 045370          232 ------EKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQ  271 (350)
Q Consensus       232 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (350)
                            ...+....+.+....++   .|+.||.+.+|.+.+-....
T Consensus       221 ~TLeGHt~Nvs~v~fhp~lpiii---sgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  221 QTLEGHTNNVSFVFFHPELPIII---SGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             HHhhcccccceEEEecCCCcEEE---EecCCccEEEecCcceehhh
Confidence                  22333344444444444   56678888888777644433

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.5e-24  Score=192.31  Aligned_cols=169  Identities=12%  Similarity=0.113  Sum_probs=133.6

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--------eEEE-EecCCceeEEEEcCCCcE-EEE
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--------LIQT-QVYPQAVTAIAFHPGEQL-LFA  123 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~-~~~~~~v~~~~~~~~~~~-l~~  123 (350)
                      ...+..+.+|.+.|.+++|+|.++.+|++|+.|++|++||+.++.        .+.. ..|...|.+++|+|++.. +++
T Consensus        64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS  143 (568)
T PTZ00420         64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS  143 (568)
T ss_pred             CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence            345677889999999999988667899999999999999998642        1222 358889999999998875 468


Q ss_pred             EccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370          124 GSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV  201 (350)
Q Consensus       124 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  201 (350)
                      ++.|+.|++||++++..          ...+. |...|.+++|+|++  |++++.|+.|+|||+++++.+.++.+|.+.+
T Consensus       144 gS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~  212 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK  212 (568)
T ss_pred             EeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence            89999999999985432          22333 55789999999999  8888899999999999999999999898765


Q ss_pred             eEE-----EEEccCCeEEeeecCc---cccccccCCcccc
Q 045370          202 TNL-----VVIRQSSLLSEVSNCQ---RKLKKDRMPSLEK  233 (350)
Q Consensus       202 ~~l-----~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~  233 (350)
                      .+.     .|++++.+|++++.+.   +.+.+|++.....
T Consensus       213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            433     3458888888877664   4677776664443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=3e-26  Score=183.01  Aligned_cols=181  Identities=25%  Similarity=0.323  Sum_probs=155.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      .|...+++|..|++|+|||..                           ...+...+.+|++.|.|+.|   +...+++|+
T Consensus       205 YDD~kiVSGlrDnTikiWD~n---------------------------~~~c~~~L~GHtGSVLCLqy---d~rviisGS  254 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKN---------------------------SLECLKILTGHTGSVLCLQY---DERVIVSGS  254 (499)
T ss_pred             ecchhhhcccccCceEEeccc---------------------------cHHHHHhhhcCCCcEEeeec---cceEEEecC
Confidence            466789999999999999998                           57788889999999999998   446899999


Q ss_pred             CCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           85 LDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      .|.+|++||+++|+++.. +.|...|..+.|+  +.++++++.|.++.+||+....       .....+.+.+|...|+.
T Consensus       255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNV  325 (499)
T ss_pred             CCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheee
Confidence            999999999999999988 6788999999995  6799999999999999998643       22334477899999999


Q ss_pred             EEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccc
Q 045370          164 LAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKD  226 (350)
Q Consensus       164 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~  226 (350)
                      +.|+...+++++.|.+|++|++.+++++.++.+|.-.|.|+.+  .++++++|++|.  ++|...
T Consensus       326 Vdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  326 VDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             eccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc
Confidence            9999888999999999999999999999999999998888776  578888777763  444443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6.7e-25  Score=172.09  Aligned_cols=192  Identities=22%  Similarity=0.327  Sum_probs=153.8

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+||| ...+|+.||.||+||+|+++...                         ...-.....|.++|.+++|+. ++..
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g-------------------------~~~~ka~~~~~~PvL~v~Wsd-dgsk   86 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIWEVQNSG-------------------------QLVPKAQQSHDGPVLDVCWSD-DGSK   86 (347)
T ss_pred             eEeccccCceEEecccCCceEEEEEecCC-------------------------cccchhhhccCCCeEEEEEcc-CCce
Confidence            68999 55677799999999999998310                         111234567999999999955 7788


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccc--------------
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDH--------------  143 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~--------------  143 (350)
                      +++|+.|+.+++||+.+++....-.|.++|.++.|-+...  .|++|+.|.+|++||.+.......              
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY  166 (347)
T ss_pred             EEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence            9999999999999999998888888999999999988665  899999999999999986431000              


Q ss_pred             -----------------------------------------------------------cccc--cccceeeeccCC---
Q 045370          144 -----------------------------------------------------------FIVG--EDQHSVLKGHNG---  159 (350)
Q Consensus       144 -----------------------------------------------------------~~~~--~~~~~~~~~~~~---  159 (350)
                                                                                 ....  ......++.|..   
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS  246 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence                                                                       0000  012224556652   


Q ss_pred             ------ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          160 ------SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       160 ------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                            .|++|+|+|..  |++++.||+..+||-.....+++.+.|..+|++.+|+.+|.+++-+.+
T Consensus       247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence                  57788999976  999999999999999999999999999999999999999998886544

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=5.4e-24  Score=189.16  Aligned_cols=205  Identities=17%  Similarity=0.152  Sum_probs=156.3

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEe-eccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEM-ELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++|+..+++++.+..+..|+...+..               ++.. ...........+.+|.+.|.+++|+|.++.+|+
T Consensus        28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~---------------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La   92 (493)
T PTZ00421         28 ALWDCSNTIACNDRFIAVPWQQLGSTA---------------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF   92 (493)
T ss_pred             ccCCCCCcEeECCceEEEEEecCCceE---------------EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence            457877788888888889998653110               0000 001111112346799999999999876778999


Q ss_pred             EEeCCCcEEEEeCCCCc-------eEEE-EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           82 SSSLDATCKVWDLGSGI-------LIQT-QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~-------~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      +|+.|++|++||+.++.       .+.. ..|...|.+++|+|++ ++|++++.|+.|++||+..+          ....
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----------~~~~  162 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG----------KAVE  162 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC----------eEEE
Confidence            99999999999997653       2333 3588899999999975 69999999999999999853          3344


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCc-eeEEEEEccCCeEEeeec---Cccccccc
Q 045370          153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGV-VTNLVVIRQSSLLSEVSN---CQRKLKKD  226 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~---~~~~~~~~  226 (350)
                      .+.+|...|.+++|+|++  |++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++.   .++.+.+|
T Consensus       163 ~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW  242 (493)
T PTZ00421        163 VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW  242 (493)
T ss_pred             EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence            677899999999999998  999999999999999999999999888765 456789998887776553   25667777


Q ss_pred             cCCccc
Q 045370          227 RMPSLE  232 (350)
Q Consensus       227 ~~~~~~  232 (350)
                      +.....
T Consensus       243 Dlr~~~  248 (493)
T PTZ00421        243 DTRKMA  248 (493)
T ss_pred             eCCCCC
Confidence            665443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.8e-25  Score=187.01  Aligned_cols=212  Identities=18%  Similarity=0.220  Sum_probs=151.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccc----c--cc-----ccccc-ccEEEeec------------------
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSEL----M--HH-----SDQLD-QRLIEMEL------------------   50 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~----~--~~-----~~~~~-~~~~~~~~------------------   50 (350)
                      +++.|.|-+|+|||.|.+|++||+..........    +  .+     .-+.. ..++....                  
T Consensus       173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence            4788999999999999999999998522211111    0  00     00001 11111100                  


Q ss_pred             --cccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEec------CCceeEEEEcCCCcEE
Q 045370           51 --RSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVY------PQAVTAIAFHPGEQLL  121 (350)
Q Consensus        51 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~------~~~v~~~~~~~~~~~l  121 (350)
                        ...-.-+....+|...++|.+|+|.+...|+|++.||++++||+..-+ .+..+.+      .-+++.++|+|+++.|
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence              001112345579999999999999888999999999999999998643 3333432      2368999999999999


Q ss_pred             EEEccCCeEEEEeCCccccccccccccccceeeeccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCc-eEEEEecc
Q 045370          122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH--LISASEDKTVCLWDVTRR-VSIRRFNH  196 (350)
Q Consensus       122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-~~~~~~~~  196 (350)
                      ++|+.||.|.+|+.......       .....-.+|..  .|+|+.|+++|  |++-+.|+++++||++.. +++....+
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~-------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg  405 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVR-------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG  405 (641)
T ss_pred             hhcccCCceeeeecCCcccc-------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence            99999999999998654322       22223456766  89999999999  999999999999999974 45555443


Q ss_pred             --CCCceeEEEEEccCCeEEeeecC
Q 045370          197 --KKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       197 --~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                        ..-+-+.++|||+.+++++|..-
T Consensus       406 L~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  406 LPTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             CCccCCCCccccCCCceEEEecccc
Confidence              23356889999999999988763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.7e-25  Score=189.24  Aligned_cols=211  Identities=21%  Similarity=0.327  Sum_probs=169.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCcccccc-----ccccccccc-----------------ccc--ccEEEeeccccccceeee
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQ-----TSELMHHSD-----------------QLD--QRLIEMELRSLRSLLHYS   60 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~~~~   60 (350)
                      |.++||+|||.||.|++|++......     .....+|+.                 .-+  ..+|...... ..+..++
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence            56789999999999999998753332     111112211                 111  1233332222 3567788


Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--eEEEE----------ecCCceeEEEEcCCCcEEEEEccCC
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--LIQTQ----------VYPQAVTAIAFHPGEQLLFAGSIDG  128 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg  128 (350)
                      ..|.+.|.|+++...+..++|+||.|+.|.+||++++.  .+.++          ++..+|++++.++.|..|++|+..+
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            89999999999977788899999999999999999872  22221          3567899999999999999999999


Q ss_pred             eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      .+++||.++          ...+..+.+|...|.++..+++|  +++++.||+|++||+...+++.++..|...|+++..
T Consensus       194 ~lr~wDprt----------~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~  263 (735)
T KOG0308|consen  194 DLRLWDPRT----------CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS  263 (735)
T ss_pred             ceEEecccc----------ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence            999999994          55566888999999999999999  999999999999999999999999999999999999


Q ss_pred             EccCCeEEeeecCccccccc
Q 045370          207 IRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +|+-..+++|+.++.+.+..
T Consensus       264 ~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  264 SPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             CCCcceEEecCCCCcEEecc
Confidence            99999999999888776554

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=5e-24  Score=190.40  Aligned_cols=191  Identities=14%  Similarity=0.185  Sum_probs=141.7

Q ss_pred             CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+ +.+|+||+.||+|+|||+.+......                   ........+.+|...|.+++|+|....+
T Consensus        80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~i  140 (568)
T PTZ00420         80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISIIDWNPMNYYI  140 (568)
T ss_pred             EEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEEEEECCCCCeE
Confidence            579997 78999999999999999973211000                   0012344567899999999998865566


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +++++.|++|++||+.+++....+.+...|.+++|+|+|.+|++++.|+.|++||++++          ..+..+.+|.+
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----------~~i~tl~gH~g  210 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----------EIASSFHIHDG  210 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----------cEEEEEecccC
Confidence            78999999999999999988877778889999999999999999999999999999954          33346778887


Q ss_pred             ceEEEE-----ecCCe--EEEEeCCC----cEEEEECCC-ceEEEEecc--CCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALA-----FSASH--LISASEDK----TVCLWDVTR-RVSIRRFNH--KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~-----~~~~~--l~s~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+.+..     |++++  +++++.|+    .|+|||+++ .+++..+..  +.+.+......+++.++++|++|.
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            654433     44665  78877664    799999995 566665542  233333333345577787776653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4e-24  Score=165.35  Aligned_cols=182  Identities=21%  Similarity=0.291  Sum_probs=149.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|.|++||+||.|.++.||.-..                         ....++..+.+|...|.+++|+. ++.+|
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~-sG~~L  120 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKED-------------------------GEFECVATLEGHENEVKCVAWSA-SGNYL  120 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecCC-------------------------CceeEEeeeeccccceeEEEEcC-CCCEE
Confidence            68999999999999999999997551                         13456788999999999999965 78999


Q ss_pred             EEEeCCCcEEEEeCCCCc---eEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGI---LIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      |+|++|++|-||.+..+.   +... .+|...|..+.|||...+|++++.|.+|++|.-....       .-.....+.+
T Consensus       121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------dW~c~~tl~g  193 (312)
T KOG0645|consen  121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------DWECVQTLDG  193 (312)
T ss_pred             EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-------CeeEEEEecC
Confidence            999999999999998553   3333 3589999999999999999999999999999876211       2334558889


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      |...|.+++|+|.|  |++++.|++|+||-+.+     .+ ..|..++..+.|.  ...|+++++|+.+
T Consensus       194 ~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i  255 (312)
T KOG0645|consen  194 HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAI  255 (312)
T ss_pred             ccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEE
Confidence            99999999999988  99999999999998662     22 2367889999998  5567777776533

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=7.1e-26  Score=179.47  Aligned_cols=186  Identities=23%  Similarity=0.323  Sum_probs=153.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|||||+||++|+.||.|.|||..++......                   .......+.-+.++|.|+.|+. +...++
T Consensus       220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-------------------kYQAqd~fMMmd~aVlci~FSR-DsEMlA  279 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-------------------KYQAQDNFMMMDDAVLCISFSR-DSEMLA  279 (508)
T ss_pred             eeCCCCceEeeccccceeeeehhccchhhhhh-------------------hhhhhcceeecccceEEEeecc-cHHHhh
Confidence            59999999999999999999998742111100                   0111123455789999999955 778999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +|+.||.|++|.+.+|.+++.+.  |...|+|+.|+.|+..+++++.|-++++.-+.+++          ....+.+|..
T Consensus       280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK----------~LKEfrGHsS  349 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK----------CLKEFRGHSS  349 (508)
T ss_pred             ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----------hHHHhcCccc
Confidence            99999999999999999999875  89999999999999999999999999999998544          4448899999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCC-eEEeee
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSS-LLSEVS  217 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~-~l~~~~  217 (350)
                      .|+...|.++|  +++++.||+|++|+..+..++.++..  ...+|.++-..|.+. .++++.
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence            99999999999  99999999999999999999998863  445788888888653 444343

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=180.99  Aligned_cols=183  Identities=24%  Similarity=0.322  Sum_probs=154.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|-.||++||.|...|.|+|||+.                           ....++.+.+|+.+|..+.|++.++..+
T Consensus        74 ~~fR~DG~LlaaGD~sG~V~vfD~k---------------------------~r~iLR~~~ah~apv~~~~f~~~d~t~l  126 (487)
T KOG0310|consen   74 VDFRSDGRLLAAGDESGHVKVFDMK---------------------------SRVILRQLYAHQAPVHVTKFSPQDNTML  126 (487)
T ss_pred             EEeecCCeEEEccCCcCcEEEeccc---------------------------cHHHHHHHhhccCceeEEEecccCCeEE
Confidence            3688899999999999999999976                           5678888999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++|+.|+.+++||+.+...... ..|.+.|+|.+|+|. +..+++|+.||.|++||.+...         ..+ .--.|.
T Consensus       127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v-~elnhg  196 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---------SRV-VELNHG  196 (487)
T ss_pred             EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---------cee-EEecCC
Confidence            9999999999999999886433 469999999999995 5588999999999999999531         222 223688


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+|-.+.+-|.| +++......|+|||+.+ ++.+..+..|...|+|+.+..++..|++++-|+
T Consensus       197 ~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  197 CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence            999999999997 44444466899999995 566666666999999999999999999888774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=5.6e-24  Score=203.06  Aligned_cols=195  Identities=19%  Similarity=0.251  Sum_probs=151.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++||+|+.|+.|+|||.........                   ......... .+...+.+++|++..+.++
T Consensus       489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEEeccCCCCEE
Confidence            57999999999999999999999862100000                   000111122 3456889999988778899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++++.||+|++||+.+++.+..+ .|...|.+++|+| ++.+|++|+.||.|++||++.+..          ...+..+ 
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----------~~~~~~~-  617 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----------IGTIKTK-  617 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----------EEEEecC-
Confidence            99999999999999998877775 5889999999997 788999999999999999985432          2244433 


Q ss_pred             CceEEEEecC-Ce--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          159 GSITALAFSA-SH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       159 ~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ..+.++.|++ ++  |++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|+. +++|++
T Consensus       618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~  689 (793)
T PLN00181        618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDL  689 (793)
T ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeC
Confidence            5789999964 45  9999999999999998865 567778899999999997 6778887776643 444544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.8e-25  Score=194.15  Aligned_cols=196  Identities=17%  Similarity=0.262  Sum_probs=160.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.||.++ +|+++|.|.+|++|++.                           ...++.. ..|.+.|+|++|+|.+.++|
T Consensus       375 lSWSKn~-fLLSSSMDKTVRLWh~~---------------------------~~~CL~~-F~HndfVTcVaFnPvDDryF  425 (712)
T KOG0283|consen  375 LSWSKNN-FLLSSSMDKTVRLWHPG---------------------------RKECLKV-FSHNDFVTCVAFNPVDDRYF  425 (712)
T ss_pred             cccccCC-eeEeccccccEEeecCC---------------------------CcceeeE-EecCCeeEEEEecccCCCcE
Confidence            5688765 89999999999999998                           3444444 57999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++|+-||.|+||++...+++.......-|++++|.|+|++.++|+.+|.+++|+....++.....+.....+... |. .
T Consensus       426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~-~~-r  503 (712)
T KOG0283|consen  426 ISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ-GK-R  503 (712)
T ss_pred             eecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc-Cc-e
Confidence            999999999999999999888888889999999999999999999999999999987766544433333222222 23 8


Q ss_pred             eEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecCccccccccC
Q 045370          161 ITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      |+.+.|.|..   +++.+.|..|||||.+...++..+.++..  .-....|+.||++|++++.| .-+.+|..
T Consensus       504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD-s~VYiW~~  575 (712)
T KOG0283|consen  504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED-SWVYIWKN  575 (712)
T ss_pred             eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC-ceEEEEeC
Confidence            9999999765   88899999999999999999998886533  34567899999999999854 44445543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.1e-24  Score=178.06  Aligned_cols=237  Identities=17%  Similarity=0.175  Sum_probs=176.7

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ..++|+++..+.|.|||..+........                 ....+-..+.+|...-.+++|++...-.+++++.|
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCccccc-----------------ccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            4578888999999999988421111000                 01223346788988888999988777889999999


Q ss_pred             CcEEEEeCCCCce-------EEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           87 ATCKVWDLGSGIL-------IQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        87 ~~v~vwd~~~~~~-------~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|++||+.....       ... -.|...|..++|++ +...|++++.|+.+.|||.|++        ..++.....+|
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~~~ah  271 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHSVKAH  271 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccccccc
Confidence            9999999986432       111 35889999999999 5668889999999999999963        23344467799


Q ss_pred             CCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcccc
Q 045370          158 NGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEK  233 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (350)
                      .+.|+|++|+|-+   ||+|+.|++|++||+|+ .++++++.+|...|.+|.|+|...-+++.++.++.+.+|++...+.
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            9999999999977   99999999999999998 4578899999999999999999876665666777777887776665


Q ss_pred             CCCCccccccceEEeeccccCCCCcccccccccch
Q 045370          234 YPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKS  268 (350)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (350)
                      ..........-..++....||...+..+.+.+...
T Consensus       352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP  386 (422)
T KOG0264|consen  352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP  386 (422)
T ss_pred             ccChhhhccCCcceeEEecCcccccccccCCCCCC
Confidence            43211111112234555567777777777776643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-24  Score=192.80  Aligned_cols=189  Identities=23%  Similarity=0.293  Sum_probs=165.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|...+++++-..|.|.+||.+                           .+.++..+..|.++|.+++|+| ...+|
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYR---------------------------M~tli~rFdeHdGpVRgv~FH~-~qplF   66 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYR---------------------------MGTLIDRFDEHDGPVRGVDFHP-TQPLF   66 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhh---------------------------hhhHHhhhhccCCccceeeecC-CCCeE
Confidence            6899999999999999999999999                           6888889999999999999976 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|-.|+||++.+.+++.+ .+|-+.|+.+.||+.-.+|+++|.|-+|+||+..          ..+.+..++||..
T Consensus        67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq----------sr~~iavltGHnH  136 (1202)
T KOG0292|consen   67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ----------SRKCIAVLTGHNH  136 (1202)
T ss_pred             EecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc----------CCceEEEEecCce
Confidence            9999999999999999999888 5799999999999999999999999999999998          4566669999999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCce-----------------------------EEEEeccCCCceeEEEEEc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRV-----------------------------SIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~  208 (350)
                      .|.|..|+|..  ++++|-|.+|||||+...+                             .-+.+.+|.-.|.-++|+|
T Consensus       137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            99999999965  9999999999999985310                             1133568999999999999


Q ss_pred             cCCeEEeeecCccccccccC
Q 045370          209 QSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .-.++++| +|++.+++|.+
T Consensus       217 TlpliVSG-~DDRqVKlWrm  235 (1202)
T KOG0292|consen  217 TLPLIVSG-ADDRQVKLWRM  235 (1202)
T ss_pred             CcceEEec-CCcceeeEEEe
Confidence            99999955 55566666643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=2e-23  Score=175.88  Aligned_cols=182  Identities=29%  Similarity=0.399  Sum_probs=156.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+|++++|++++.||.|++||+.                           .......+..|...+.++.|.+. +.++
T Consensus        57 ~~~~~~~~~l~~~~~~~~i~i~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~~-~~~~  108 (289)
T cd00200          57 VAASADGTYLASGSSDKTIRLWDLE---------------------------TGECVRTLTGHTSYVSSVAFSPD-GRIL  108 (289)
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcC---------------------------cccceEEEeccCCcEEEEEEcCC-CCEE
Confidence            4689999999999999999999998                           34555666788889999999774 6788


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|+.|.+||+.+++....+. |...+.+++|+|++.++++++.||.|++||++..          .....+..|..
T Consensus       109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~  178 (289)
T cd00200         109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------KCVATLTGHTG  178 (289)
T ss_pred             EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc----------ccceeEecCcc
Confidence            888889999999999888777765 7788999999999999999888999999999843          33446668888


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+.++.|+|++  +++++.|+.|++||+++++.+..+..|..++.+++|+|++.++++++.++
T Consensus       179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            99999999997  88888899999999999999998877888999999999988888666343

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.9e-24  Score=173.35  Aligned_cols=182  Identities=19%  Similarity=0.293  Sum_probs=161.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++||+-..||++++.|+.|+-||++                           ....++.+.+|-..|.|+..+| .-..|
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe---------------------------~nkvIR~YhGHlS~V~~L~lhP-Tldvl  250 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLE---------------------------YNKVIRHYHGHLSGVYCLDLHP-TLDVL  250 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEech---------------------------hhhhHHHhccccceeEEEeccc-cceeE
Confidence            5789989999999999999999999                           6888899999999999999876 45789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++|+.|++|++||++.+          +....+..|..
T Consensus       251 ~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag----------kt~~tlt~hkk  320 (460)
T KOG0285|consen  251 VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG----------KTMITLTHHKK  320 (460)
T ss_pred             EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC----------ceeEeeecccc
Confidence            999999999999999998888865 9999999999999999999999999999999954          34447888999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      .+.+++.+|..  +++++.| .|+-|++..+..+..+.+|..-+.+++...|+-++. |+..+.+
T Consensus       321 svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~-G~dng~~  383 (460)
T KOG0285|consen  321 SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS-GGDNGSI  383 (460)
T ss_pred             eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEE-cCCceEE
Confidence            99999999987  8888777 689999999999999999999999999998887665 5544433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=1.7e-23  Score=175.61  Aligned_cols=195  Identities=22%  Similarity=0.310  Sum_probs=154.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec---cccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL---EHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~   77 (350)
                      +.|||||.+++|.+.||+|.+||=.                           .+..+..+.   +|.+.|.+++|+| ++
T Consensus       196 VRysPDG~~Fat~gsDgki~iyDGk---------------------------tge~vg~l~~~~aHkGsIfalsWsP-Ds  247 (603)
T KOG0318|consen  196 VRYSPDGSRFATAGSDGKIYIYDGK---------------------------TGEKVGELEDSDAHKGSIFALSWSP-DS  247 (603)
T ss_pred             EEECCCCCeEEEecCCccEEEEcCC---------------------------CccEEEEecCCCCccccEEEEEECC-CC
Confidence            5799999999999999999999977                           355555554   8999999999966 77


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe--------------------------------------------cCCceeEEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV--------------------------------------------YPQAVTAIA  113 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~--------------------------------------------~~~~v~~~~  113 (350)
                      ..++|++.|.++++||+.+++++.++.                                            |...|+++.
T Consensus       248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt  327 (603)
T KOG0318|consen  248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT  327 (603)
T ss_pred             ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence            889999999999999998765443321                                            345799999


Q ss_pred             EcCCCcEEEEEccCCeEEEEeCCccccccc--------------------------------------------------
Q 045370          114 FHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--------------------------------------------------  143 (350)
Q Consensus       114 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------------------------------------  143 (350)
                      .+|++.+|++|+.||.|.-|+...+.....                                                  
T Consensus       328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q  407 (603)
T KOG0318|consen  328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ  407 (603)
T ss_pred             EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence            999999999999999999999865430000                                                  


Q ss_pred             --------------------------------------------------------------cccc---cccceeeeccC
Q 045370          144 --------------------------------------------------------------FIVG---EDQHSVLKGHN  158 (350)
Q Consensus       144 --------------------------------------------------------------~~~~---~~~~~~~~~~~  158 (350)
                                                                                    +.+.   .........|.
T Consensus       408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~  487 (603)
T KOG0318|consen  408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR  487 (603)
T ss_pred             ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence                                                                          0000   00111345688


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE-EeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIR-RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ++|++++++|++  |++|...+.+.+||..+++... .+.-|...|.+++|+|+..++|+|+-|..++
T Consensus       488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence            999999999999  9999999999999999887632 3345899999999999999999988875544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=5e-24  Score=174.85  Aligned_cols=188  Identities=27%  Similarity=0.366  Sum_probs=163.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+|+...+++++.|-.|+||...                           ..........|..+|+.+..++ .+.||
T Consensus       267 v~~~~~~~~v~~aSad~~i~vws~~---------------------------~~s~~~~~~~h~~~V~~ls~h~-tgeYl  318 (506)
T KOG0289|consen  267 VKFHKDLDTVITASADEIIRVWSVP---------------------------LSSEPTSSRPHEEPVTGLSLHP-TGEYL  318 (506)
T ss_pred             EEeccchhheeecCCcceEEeeccc---------------------------cccCccccccccccceeeeecc-CCcEE
Confidence            3588999999999999999999987                           3344556678999999998865 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecC---CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++++.|++..+.|++++..+....+.   -.+++.+|||||..|.+|+.||.|++||+..          ......|.+|
T Consensus       319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks----------~~~~a~Fpgh  388 (506)
T KOG0289|consen  319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS----------QTNVAKFPGH  388 (506)
T ss_pred             EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC----------ccccccCCCC
Confidence            99999999999999999988877664   3599999999999999999999999999994          3455589999


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC-CCceeEEEEEccCCeEEeeecCccccccc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK-KGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      .++|..++|+.+|  |++++.|+.|++||+|..+...++... ..++.++.|.+.|.+|+.++.+..+..+.
T Consensus       389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999999999999  999999999999999998888887632 33799999999999999998887666554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=2.7e-23  Score=175.03  Aligned_cols=189  Identities=29%  Similarity=0.427  Sum_probs=157.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++++.||.|++|++.                           ..........|...+..+.|.+ ++.++
T Consensus        15 ~~~~~~~~~l~~~~~~g~i~i~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~l   66 (289)
T cd00200          15 VAFSPDGKLLATGSGDGTIKVWDLE---------------------------TGELLRTLKGHTGPVRDVAASA-DGTYL   66 (289)
T ss_pred             EEEcCCCCEEEEeecCcEEEEEEee---------------------------CCCcEEEEecCCcceeEEEECC-CCCEE
Confidence            5799999999999999999999998                           3445566778889999999976 55789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.||.|++||+.+++....+. +...+.++.|++++.++++++.||.+.+||++..          .....+..|..
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~  136 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTD  136 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------EEEEEeccCCC
Confidence            999999999999999876666654 6678999999999889998888999999999843          23335667888


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .+.++.|+|++  +++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++.++ .+.+|+.
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~  206 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG-TIKLWDL  206 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC-cEEEEEC
Confidence            99999999977  55566699999999999999999988888999999999998888777643 3444443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.5e-24  Score=166.24  Aligned_cols=184  Identities=22%  Similarity=0.289  Sum_probs=156.4

Q ss_pred             eecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|++ +++.++++|.|++|++|+..                           ....+.++.+|...|....|+|..++++
T Consensus       111 dwn~~~r~~~ltsSWD~TiKLW~~~---------------------------r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen  111 DWNTVRRRIFLTSSWDGTIKLWDPN---------------------------RPNSVQTFNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             ccccccceeEEeeccCCceEeecCC---------------------------CCcceEeecCCccEEEEEecCCCCCCeE
Confidence            3444 35678888999999999998                           4667788999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCC-CceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGS-GILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++++.|+++++||++. |+.+....|...+.|+.|+. +.+.+++|+.|+.|+.||+++.         ..++..+.+|.
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~---------r~pl~eL~gh~  234 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL---------RTPLFELNGHG  234 (311)
T ss_pred             EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc---------cccceeecCCc
Confidence            9999999999999986 44444445778999999998 6678899999999999999964         34566889999


Q ss_pred             CceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEcc-CCeEEeeecCcc
Q 045370          159 GSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNCQR  221 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~~~  221 (350)
                      -.|..+.|+|..   |++++.|-++||||... ...+.+...|..-+..+.|++. +.++++++.|..
T Consensus       235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~  302 (311)
T KOG0277|consen  235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL  302 (311)
T ss_pred             eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccc
Confidence            999999999987   99999999999999885 4566777889999999999986 568887877754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.6e-24  Score=183.54  Aligned_cols=190  Identities=19%  Similarity=0.292  Sum_probs=161.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~   79 (350)
                      +.|+++|.+|++|..+|.|.|||..                           .......+.+ |...|-+++|.   ...
T Consensus       223 v~ws~~G~~LavG~~~g~v~iwD~~---------------------------~~k~~~~~~~~h~~rvg~laW~---~~~  272 (484)
T KOG0305|consen  223 VKWSPDGSHLAVGTSDGTVQIWDVK---------------------------EQKKTRTLRGSHASRVGSLAWN---SSV  272 (484)
T ss_pred             EEECCCCCEEEEeecCCeEEEEehh---------------------------hccccccccCCcCceeEEEecc---Cce
Confidence            5799999999999999999999998                           4556666666 99999999995   567


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +.+|+.|+.|..+|++..+....  ..|...|..+.|++++.++++|+.|+.+.|||..          ...+...+..|
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~----------~~~p~~~~~~H  342 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL----------SPEPKFTFTEH  342 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC----------CccccEEEecc
Confidence            99999999999999998765544  4589999999999999999999999999999995          45666688999


Q ss_pred             CCceEEEEecCCe---EEEEe--CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec-CccccccccCCcc
Q 045370          158 NGSITALAFSASH---LISAS--EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN-CQRKLKKDRMPSL  231 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~  231 (350)
                      .+.|.+++|+|-.   ||+|+  .|+.|++||..++..+..+. ..+.|.+|.|++..+-|+++.+ ....+.+|.++.+
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~  421 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM  421 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence            9999999999976   77776  69999999999999999887 4678999999999876665544 3455666655553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.92  E-value=2.4e-25  Score=177.90  Aligned_cols=176  Identities=23%  Similarity=0.330  Sum_probs=152.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +..-|.+.+++|+.|.+|+|||++                           ++.++.++.+|.+.|..+.|+   +.+++
T Consensus       242 CLqyd~rviisGSSDsTvrvWDv~---------------------------tge~l~tlihHceaVLhlrf~---ng~mv  291 (499)
T KOG0281|consen  242 CLQYDERVIVSGSSDSTVRVWDVN---------------------------TGEPLNTLIHHCEAVLHLRFS---NGYMV  291 (499)
T ss_pred             eeeccceEEEecCCCceEEEEecc---------------------------CCchhhHHhhhcceeEEEEEe---CCEEE
Confidence            344577899999999999999999                           688999999999999999994   35799


Q ss_pred             EEeCCCcEEEEeCCCCceEEE----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           82 SSSLDATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +++.|.++.+||+....-+..    .+|...|+.+.|+  .++|++++.|.+|++|++.+          .+.++.+.+|
T Consensus       292 tcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st----------~efvRtl~gH  359 (499)
T KOG0281|consen  292 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST----------CEFVRTLNGH  359 (499)
T ss_pred             EecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc----------eeeehhhhcc
Confidence            999999999999987653222    4688999999994  66999999999999999995          4555688999


Q ss_pred             CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ...|.|+.+....+++|+.|.+|++||+..|.++..+++|..-|.++.|.  .+.+++|+.|++
T Consensus       360 kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk  421 (499)
T KOG0281|consen  360 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK  421 (499)
T ss_pred             cccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence            99999999987779999999999999999999999999999999999994  667777776653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=2.3e-23  Score=167.44  Aligned_cols=192  Identities=19%  Similarity=0.227  Sum_probs=159.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.||.||.+||||+.+|.|+||+..                           .+.....+..--..+.-+.|+| ...+|
T Consensus       112 ~~FshdgtlLATGdmsG~v~v~~~s---------------------------tg~~~~~~~~e~~dieWl~WHp-~a~il  163 (399)
T KOG0296|consen  112 CSFSHDGTLLATGDMSGKVLVFKVS---------------------------TGGEQWKLDQEVEDIEWLKWHP-RAHIL  163 (399)
T ss_pred             EEEccCceEEEecCCCccEEEEEcc---------------------------cCceEEEeecccCceEEEEecc-cccEE
Confidence            4799999999999999999999998                           4555555555667788888877 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc--------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI--------------  145 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------  145 (350)
                      +.|+.||.|-+|.+.++...+. .+|..++++=.|.|+|+.++++..||+|++|+..++.......              
T Consensus       164 lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~  243 (399)
T KOG0296|consen  164 LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL  243 (399)
T ss_pred             EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence            9999999999999999655554 4699999999999999999999999999999998765211100              


Q ss_pred             -----------------------------------------------------------------------cccccceee
Q 045370          146 -----------------------------------------------------------------------VGEDQHSVL  154 (350)
Q Consensus       146 -----------------------------------------------------------------------~~~~~~~~~  154 (350)
                                                                                             ......+..
T Consensus       244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~  323 (399)
T KOG0296|consen  244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI  323 (399)
T ss_pred             ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence                                                                                   000011123


Q ss_pred             eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      -.|..+|+.+.|-+.. |++++.||.|+.||.|+|+++.++.+|..+|.+++++|++++++++|.|.
T Consensus       324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            4578889999999954 99999999999999999999999999999999999999999999988875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2e-24  Score=188.82  Aligned_cols=188  Identities=22%  Similarity=0.277  Sum_probs=153.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      +.++|||++..|.|.+||+...                        .....+..+..|...+.++.|++...++|++|+.
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ  154 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ  154 (839)
T ss_pred             hhhhheeecCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence            4579999999999999999831                        0144556778999999999999999999999999


Q ss_pred             CCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      ||+|++||++......++ .....|+.|.|+| .+..|+++...|.+.+||++.         .......+.+|.++|.|
T Consensus       155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq---------p~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ---------PDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC---------chhHHHHhhcccCceEE
Confidence            999999999988776664 4677899999999 577899999999999999995         44555688899999999


Q ss_pred             EEecCCe--EEEEeCCCcEEEEECCCceE--EEEeccCCCceeEEEEEccCCeEEeeec--Ccccccccc
Q 045370          164 LAFSASH--LISASEDKTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQSSLLSEVSN--CQRKLKKDR  227 (350)
Q Consensus       164 ~~~~~~~--l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~--~~~~~~~~~  227 (350)
                      +.|+|++  ||||+.|+.|+|||+.+.+.  +.++. ...+|.+|.|=|..++.++.+.  .+.-+.+|+
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD  294 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD  294 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence            9999988  99999999999999986543  44444 4578999999999876554443  234444443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.92  E-value=3.3e-24  Score=178.10  Aligned_cols=193  Identities=17%  Similarity=0.201  Sum_probs=156.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+++|..|+|+|.|+.|++||+++                           +.+...+ .-...+.|+.|.|.+.+.|
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtET---------------------------G~~~~~f-~~~~~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTET---------------------------GQVLSRF-HLDKVPTCVKFHPDNQNIF  315 (503)
T ss_pred             hhccccCCeeeeeecceeeeeecccc---------------------------ceEEEEE-ecCCCceeeecCCCCCcEE
Confidence            57999999999999999999999993                           4444433 2345678888888777999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc----------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH----------------  143 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------  143 (350)
                      ++|+.|+.|+.||++++++++.+. |-+.|..+.|-++|+.+++.+.|+.+++|+.+.......                
T Consensus       316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP  395 (503)
T ss_pred             EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence            999999999999999999888864 778999999999999999999999999999876431110                


Q ss_pred             --------------------cccccccceeeeccC--CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC
Q 045370          144 --------------------FIVGEDQHSVLKGHN--GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG  199 (350)
Q Consensus       144 --------------------~~~~~~~~~~~~~~~--~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  199 (350)
                                          ..........+.+|.  +.-..+.|||+|  |++|+.||.+.+||.++-+.+..+.+|.+
T Consensus       396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~  475 (503)
T KOG0282|consen  396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ  475 (503)
T ss_pred             CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence                                000111223456664  456678899999  99999999999999999999999999999


Q ss_pred             ceeEEEEEccC-CeEEeeecCcc
Q 045370          200 VVTNLVVIRQS-SLLSEVSNCQR  221 (350)
Q Consensus       200 ~v~~l~~~~~~-~~l~~~~~~~~  221 (350)
                      ++..+.|+|.. ..+++++.++.
T Consensus       476 ~ci~v~wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  476 PCIGVDWHPVEPSKVATCGWDGL  498 (503)
T ss_pred             ceEEEEecCCCcceeEecccCce
Confidence            99999999986 46777776653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=4.5e-23  Score=166.57  Aligned_cols=190  Identities=17%  Similarity=0.257  Sum_probs=157.9

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cEEEEEe
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TFFVSSS   84 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~   84 (350)
                      +++++||++||.+++||..                            +.....+.+|.++|.+++|...+.  ..|++++
T Consensus       115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence            5799999999999999998                            788888999999999999987554  3699999


Q ss_pred             CCCcEEEEeCCCCceEEE-----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc---------------cccc
Q 045370           85 LDATCKVWDLGSGILIQT-----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL---------------EDHF  144 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~  144 (350)
                      .|.++++|.++.+.....     .+|...|.++...++|..+++|+.|.+|.+|+..+...               ....
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~  246 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE  246 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence            999999999987764433     37999999999999999999999999999999432211               0111


Q ss_pred             ccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .....++..+.+|..+|.++.|++.. +++++.|.+|+.||+.++..+.++.. ..++.++.++|...+|++|+.+ +.+
T Consensus       247 ~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd-r~i  324 (423)
T KOG0313|consen  247 GGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD-RHI  324 (423)
T ss_pred             ccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC-Cce
Confidence            22345666889999999999999988 99999999999999999999988874 5789999999999999977665 344


Q ss_pred             ccc
Q 045370          224 KKD  226 (350)
Q Consensus       224 ~~~  226 (350)
                      ++|
T Consensus       325 rl~  327 (423)
T KOG0313|consen  325 RLW  327 (423)
T ss_pred             eec
Confidence            444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=6.5e-23  Score=164.85  Aligned_cols=181  Identities=17%  Similarity=0.293  Sum_probs=156.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++.+|+.++++||+.|....+|++.                           .+.....+.+|.+.|+++.|+. ++.+|
T Consensus        70 vsl~P~~~l~aTGGgDD~AflW~~~---------------------------~ge~~~eltgHKDSVt~~~Fsh-dgtlL  121 (399)
T KOG0296|consen   70 VSLHPNNNLVATGGGDDLAFLWDIS---------------------------TGEFAGELTGHKDSVTCCSFSH-DGTLL  121 (399)
T ss_pred             EEeCCCCceEEecCCCceEEEEEcc---------------------------CCcceeEecCCCCceEEEEEcc-CceEE
Confidence            4678999999999999999999998                           5667888899999999999976 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      |||+-+|.|+||+..++.....+. .-..+.-+.|||.+..|++|+.||.+.+|.+.+.          .....+.+|..
T Consensus       122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~  191 (399)
T KOG0296|consen  122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNS  191 (399)
T ss_pred             EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc----------ceeeEecCCCC
Confidence            999999999999999998888765 5567899999999999999999999999999853          34447889999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc-CCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ++++=.|.|+|  ++++..||+|++||+.+++++..+.. ......++.++..+..++.|+.+
T Consensus       192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            99999999999  99999999999999999999998862 23456666776666666655544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.1e-22  Score=157.14  Aligned_cols=211  Identities=20%  Similarity=0.207  Sum_probs=160.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc------------------cccccccEEEeeccccccceeeecc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH------------------SDQLDQRLIEMELRSLRSLLHYSLE   62 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~   62 (350)
                      |.|+++|.+|++++.|.++++||..++..........                  +...+..+.-+. -...+.++.+.+
T Consensus        20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs-l~dNkylRYF~G   98 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS-LHDNKYLRYFPG   98 (311)
T ss_pred             EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE-eecCceEEEcCC
Confidence            5799999999999999999999998754433222111                  111122222222 224678899999


Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      |...|.++..+|.+ +.+++++.|++|++||++..++...+.... -..++|+|.|-++|++...+.|++||++....  
T Consensus        99 H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--  174 (311)
T KOG1446|consen   99 HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDK--  174 (311)
T ss_pred             CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCC--
Confidence            99999999998755 789999999999999999888777665433 34678999999999999888999999997532  


Q ss_pred             ccccccccceeee---ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce---eEEEEEccCCeEE
Q 045370          143 HFIVGEDQHSVLK---GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV---TNLVVIRQSSLLS  214 (350)
Q Consensus       143 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v---~~l~~~~~~~~l~  214 (350)
                            .+...+.   +.....+.|.|+|+|  ++.+...+.+++.|.-+|..+.++..+...-   .+.+|.||+++++
T Consensus       175 ------gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  175 ------GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL  248 (311)
T ss_pred             ------CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence                  2222222   346788999999999  7888888999999999999999887654432   5778999999999


Q ss_pred             eeecCccc
Q 045370          215 EVSNCQRK  222 (350)
Q Consensus       215 ~~~~~~~~  222 (350)
                      +|+.|+++
T Consensus       249 ~gs~dg~i  256 (311)
T KOG1446|consen  249 SGSDDGTI  256 (311)
T ss_pred             EecCCCcE
Confidence            77777543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.1e-24  Score=161.11  Aligned_cols=189  Identities=19%  Similarity=0.208  Sum_probs=153.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEEEEEe
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFFVSSS   84 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~   84 (350)
                      -|.+|||++.|++|+|+.+++.                        ....++..+.+|.++|+-++|.+| -|.+|++++
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n------------------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs   77 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNN------------------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS   77 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCC------------------------CCceeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence            5889999999999999999831                        123677889999999999999764 478999999


Q ss_pred             CCCcEEEEeCCCCceEEE---EecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           85 LDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +||.|.||...+++....   ..|...|++++|.|.  |-.|++++.||.|.+.+.+....       .........|.-
T Consensus        78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~  150 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEI  150 (299)
T ss_pred             cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhcccc
Confidence            999999999998855444   248889999999995  56889999999999999885411       112225668999


Q ss_pred             ceEEEEecCC---e-------------EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccC----CeEEeee
Q 045370          160 SITALAFSAS---H-------------LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQS----SLLSEVS  217 (350)
Q Consensus       160 ~i~~~~~~~~---~-------------l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~----~~l~~~~  217 (350)
                      .|+++.|.|.   |             |++|+.|..|+||+..+++  .-.++.+|...|+.++|.|.-    ..+++++
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            9999999886   2             9999999999999998753  344578999999999999974    5788888


Q ss_pred             cCcccccc
Q 045370          218 NCQRKLKK  225 (350)
Q Consensus       218 ~~~~~~~~  225 (350)
                      .|++++.+
T Consensus       231 qDg~viIw  238 (299)
T KOG1332|consen  231 QDGTVIIW  238 (299)
T ss_pred             CCCcEEEE
Confidence            88766544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.8e-23  Score=163.70  Aligned_cols=194  Identities=24%  Similarity=0.305  Sum_probs=153.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      .|+|+++|+.||.|.|||+++.......           -+.... ..........+|.-.|.++.|.|-+...|.+++.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s-----------~li~k~-~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF  122 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEAS-----------GLIAKH-KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF  122 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhc-----------cceehe-eeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence            5899999999999999999842210000           000000 0000112336788999999999999999999999


Q ss_pred             CCcEEEEeCCCCceEEEEecCCceeEEEEcCC---CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPG---EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      |.+++|||.++-+....+..++.|.+-+++|-   ..++++|..|-.|++.|+.++.+..          .+.+|.+.|.
T Consensus       123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH----------~LsGHr~~vl  192 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH----------TLSGHRDGVL  192 (397)
T ss_pred             cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee----------eeccccCceE
Confidence            99999999999999999999999999999994   3478888899999999999765543          8889999999


Q ss_pred             EEEecCCe---EEEEeCCCcEEEEECCCc-eEEEEe--------------ccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          163 ALAFSASH---LISASEDKTVCLWDVTRR-VSIRRF--------------NHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       163 ~~~~~~~~---l~s~~~dg~v~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ++.|+|..   |++|+.||.|++||++.- .+...+              ..|.+.|.+++|..++.++++++.+.+
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            99999987   999999999999999863 222222              347788999999999999998877753

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.2e-23  Score=170.63  Aligned_cols=210  Identities=17%  Similarity=0.214  Sum_probs=158.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCcccccccc-ccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTS-ELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      -|+|+|.|..|..|.|||+.=-....+ ...+       ....-.....+..-....+|++.|.+++|+....+.|++||
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG-------s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs  263 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG-------SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS  263 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeec-------hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC
Confidence            368999999999999999871000000 0000       00000000001111223579999999999887889999999


Q ss_pred             CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           85 LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      .|.+|++||+.++++..++. |...|.++.|+|. ...|++|+.|++|.+.|.+......          ..-...+.|-
T Consensus       264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----------~~wk~~g~VE  333 (463)
T KOG0270|consen  264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----------KEWKFDGEVE  333 (463)
T ss_pred             CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------ceEEeccceE
Confidence            99999999999999999987 7889999999995 5689999999999999999421111          1112346788


Q ss_pred             EEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccc
Q 045370          163 ALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLE  232 (350)
Q Consensus       163 ~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~  232 (350)
                      .++|.|..   ++++..||+|+-+|+|+ ++++.++.+|.++|+++++++....+++..+.++.+++|.+....
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            89998876   88999999999999998 489999999999999999999988777677777888888665443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=5.1e-23  Score=179.57  Aligned_cols=189  Identities=20%  Similarity=0.278  Sum_probs=159.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccc----eeeeccccCCceEEEEeeCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL----LHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~   76 (350)
                      |+.+||+..++|||.|.+|++||..-.                  .. .+....+.    ......-.+.|.|+.++| +
T Consensus       460 i~~~pD~~g~vT~saDktVkfWdf~l~------------------~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-d  519 (888)
T KOG0306|consen  460 ISLSPDNKGFVTGSADKTVKFWDFKLV------------------VS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSP-D  519 (888)
T ss_pred             eeecCCCCceEEecCCcEEEEEeEEEE------------------ec-cCcccceeeeeccceEEeccccEEEEEEcC-C
Confidence            467899999999999999999998721                  11 00001111    112234568899999855 8


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +.+++.+--|.+|+||-+++-+...+ ++|.-||.|+..+||++.+++|+.|.+|++|-+..+.+          ...+.
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC----------HKS~f  589 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC----------HKSFF  589 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----------hhhhh
Confidence            89999999999999999999876665 68999999999999999999999999999999995544          44888


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +|...|+++.|.|..  +++++.|+.|+-||-.....+..+.+|...|++++.+|+|.++++++.|
T Consensus       590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD  655 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD  655 (888)
T ss_pred             cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence            999999999999987  9999999999999999999999999999999999999999999987775

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.9e-23  Score=168.60  Aligned_cols=191  Identities=16%  Similarity=0.228  Sum_probs=160.8

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS   83 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~   83 (350)
                      .|....++||+.|.++.++|..                           ....+..+.+|...|+.+.+++ +...++++
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~---------------------------s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~a  279 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKP---------------------------SNQILATLKGHTKKITSVKFHK-DLDTVITA  279 (506)
T ss_pred             cCCCCcceecCCCCceEEEecc---------------------------hhhhhhhccCcceEEEEEEecc-chhheeec
Confidence            3444789999999999999998                           6788899999999999999966 56778999


Q ss_pred             eCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           84 SLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      +.|..|++|.......... ..|..+|+.+..+|.|.||++++.||...+.|++++......        .-....-.++
T Consensus       280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v--------s~~~s~v~~t  351 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV--------SDETSDVEYT  351 (506)
T ss_pred             CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE--------eeccccceeE
Confidence            9999999999887665444 569999999999999999999999999999999965433210        1112334689


Q ss_pred             EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370          163 ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL  231 (350)
Q Consensus       163 ~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  231 (350)
                      +.+|+|||  |.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|-+|+++++|+. +.+|+++.+
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl  421 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKL  421 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhh
Confidence            99999999  889999999999999999999999999999999999999999998888864 555555443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=3.2e-22  Score=174.65  Aligned_cols=213  Identities=22%  Similarity=0.282  Sum_probs=162.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc-----cccc---------cccEEEeeccccccceeeeccccCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH-----SDQL---------DQRLIEMELRSLRSLLHYSLEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~~   66 (350)
                      ++||.|...++||+ .+.|+||+..+..+.....+..     .-+.         .+.+-.++.. ....+....+|.+.
T Consensus       379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Eti~AHdga  456 (888)
T KOG0306|consen  379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVETIRAHDGA  456 (888)
T ss_pred             EEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhhhhccccc
Confidence            47888887787775 4789999988655433222211     0011         1222212111 23445566799999


Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCC-----Cce---E-----EEEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGS-----GIL---I-----QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS  133 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-----~~~---~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  133 (350)
                      |++++..| ++..+++||.|.+|++||..-     |..   +     ..+..+..|.|+.++|||++++++--|.+|++|
T Consensus       457 IWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  457 IWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             eeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            99999866 677899999999999999641     111   1     224567889999999999999999999999999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      -+.+.+.          ...+.||.-||.||..+|+.  ++|||.|.+|+||-+.-|.+-+.+.+|...|.++.|.|...
T Consensus       536 flDtlKF----------flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~  605 (888)
T KOG0306|consen  536 FLDTLKF----------FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH  605 (888)
T ss_pred             Eecceee----------eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence            9985443          33788999999999999999  99999999999999999999999999999999999999988


Q ss_pred             eEEeeecCcccccccc
Q 045370          212 LLSEVSNCQRKLKKDR  227 (350)
Q Consensus       212 ~l~~~~~~~~~~~~~~  227 (350)
                      ++.+++.|+ .++.|+
T Consensus       606 ~FFt~gKD~-kvKqWD  620 (888)
T KOG0306|consen  606 LFFTCGKDG-KVKQWD  620 (888)
T ss_pred             eEEEecCcc-eEEeec
Confidence            888777664 333443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=168.05  Aligned_cols=187  Identities=24%  Similarity=0.348  Sum_probs=160.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++.|+||+|||+|+.|..|.||+.+                           +...+..+.+|.+.|.+++|-. +.+.+
T Consensus       208 ~avS~Dgkylatgg~d~~v~Iw~~~---------------------------t~ehv~~~~ghr~~V~~L~fr~-gt~~l  259 (479)
T KOG0299|consen  208 LAVSSDGKYLATGGRDRHVQIWDCD---------------------------TLEHVKVFKGHRGAVSSLAFRK-GTSEL  259 (479)
T ss_pred             EEEcCCCcEEEecCCCceEEEecCc---------------------------ccchhhcccccccceeeeeeec-Cccce
Confidence            5789999999999999999999999                           5777788999999999999954 66779


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|++|++|+++....+.+ +.|++.|..+....-++.+.+|+.|+++++|++..           +....+.+|.+
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----------esqlifrg~~~  328 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----------ESQLIFRGGEG  328 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-----------cceeeeeCCCC
Confidence            9999999999999998777766 78999999999988899999999999999999852           22336778899


Q ss_pred             ceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec-cC-----------CCceeEEEEEccCCeEEeeecCc--cccc
Q 045370          160 SITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN-HK-----------KGVVTNLVVIRQSSLLSEVSNCQ--RKLK  224 (350)
Q Consensus       160 ~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-~~-----------~~~v~~l~~~~~~~~l~~~~~~~--~~~~  224 (350)
                      .+-|++|-.+. +++|+.||.|.+|++.+.+++.+.. +|           ...|++|+..|...++++|+.++  ++|.
T Consensus       329 sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  329 SIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             CeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            99999998887 9999999999999999988887763 22           12789999999999999888664  4554


Q ss_pred             cc
Q 045370          225 KD  226 (350)
Q Consensus       225 ~~  226 (350)
                      +.
T Consensus       409 i~  410 (479)
T KOG0299|consen  409 IE  410 (479)
T ss_pred             ec
Confidence            43

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2e-22  Score=158.79  Aligned_cols=189  Identities=19%  Similarity=0.271  Sum_probs=154.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|+|.++.|+.++.||.+++||+..                            ..+.....|..++.+++|..  ...+
T Consensus        19 v~f~~~~~~LLvssWDgslrlYdv~~----------------------------~~l~~~~~~~~plL~c~F~d--~~~~   68 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDGSLRLYDVPA----------------------------NSLKLKFKHGAPLLDCAFAD--ESTI   68 (323)
T ss_pred             EEEcCcCCcEEEEeccCcEEEEeccc----------------------------hhhhhheecCCceeeeeccC--CceE
Confidence            56899999999999999999999982                            23444567999999999965  3568


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-----------------  143 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------  143 (350)
                      ++|+.||.|+.+|+.++.......|..++.|+.+.+....+++|+.|+.|++||.+.......                 
T Consensus        69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~L  148 (323)
T KOG1036|consen   69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRL  148 (323)
T ss_pred             EEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEE
Confidence            999999999999999999888889999999999999888999999999999999883110000                 


Q ss_pred             ------------------------------------------------------------cccccccceeeeccC-----
Q 045370          144 ------------------------------------------------------------FIVGEDQHSVLKGHN-----  158 (350)
Q Consensus       144 ------------------------------------------------------------~~~~~~~~~~~~~~~-----  158 (350)
                                                                                  ..........++.|.     
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence                                                                        000001122455554     


Q ss_pred             ----CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          159 ----GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       159 ----~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                          -+|++|+|+|-.  |+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++..
T Consensus       229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence                379999999986  9999999999999999999999998777889999999999999988764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.90  E-value=1.1e-23  Score=161.18  Aligned_cols=178  Identities=25%  Similarity=0.343  Sum_probs=158.5

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS   83 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~   83 (350)
                      .|+|-+|++++.||.-.+-+-+                           ++..+.++.+|.+.|++..... +....+++
T Consensus        26 tp~g~flisa~kd~~pmlr~g~---------------------------tgdwigtfeghkgavw~~~l~~-na~~aasa   77 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLRNGD---------------------------TGDWIGTFEGHKGAVWSATLNK-NATRAASA   77 (334)
T ss_pred             CCCceEEEEeccCCCchhccCC---------------------------CCCcEEeeeccCcceeeeecCc-hhhhhhhh
Confidence            3689999999999988877666                           6788999999999999988754 55668899


Q ss_pred             eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           84 SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      +.|-+-++||.-+|..++++.|..-|.+++|+.|.++|++|+.+..+++||++..         ..+...+.+|.+.|..
T Consensus        78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---------~App~E~~ghtg~Ir~  148 (334)
T KOG0278|consen   78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---------KAPPKEISGHTGGIRT  148 (334)
T ss_pred             cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCC---------CCCchhhcCCCCccee
Confidence            9999999999999999999999999999999999999999999999999999853         3444578899999999


Q ss_pred             EEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          164 LAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       164 ~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +.|....  +++++.|++||+||.+++..+.++. ...+|+++.++++|++|..+.+.
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCc
Confidence            9998655  8888999999999999999999998 57889999999999999877655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=9.4e-24  Score=183.34  Aligned_cols=181  Identities=23%  Similarity=0.322  Sum_probs=163.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|+++..+|++|+.+|+|++||++                           ....++++.+|...+..+.|+| -+.++
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDle---------------------------eAk~vrtLtgh~~~~~sv~f~P-~~~~~  127 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLE---------------------------EAKIVRTLTGHLLNITSVDFHP-YGEFF  127 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehh---------------------------hhhhhhhhhccccCcceeeecc-ceEEe
Confidence            4688899999999999999999999                           5777889999999999999866 67888


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|+.+++||++...+.+.+. |...+.++.|+|+|++++.|+.|..+++||+..+++          ...|..|.+
T Consensus       128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~----------~~ef~~~e~  197 (825)
T KOG0267|consen  128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL----------SKEFKSHEG  197 (825)
T ss_pred             ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc----------ccccccccc
Confidence            999999999999999888888765 888899999999999999999999999999985543          347889999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+..+.|+|..  +++|+.|++|++||+++.+.+.........|.++.|+|++..+++|...
T Consensus       198 ~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  198 KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999999988  9999999999999999999999888788899999999999999877654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-21  Score=146.14  Aligned_cols=206  Identities=22%  Similarity=0.252  Sum_probs=158.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccc----cccccc----------------------cccccccEEEeeccccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT----SELMHH----------------------SDQLDQRLIEMELRSLR   54 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~----------------------~~~~~~~~~~~~~~~~~   54 (350)
                      .+|||+|+++++|+.|.+|++.-++...+..    .++.-+                      .+..+..++..+.. .+
T Consensus        95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g  173 (350)
T KOG0641|consen   95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RG  173 (350)
T ss_pred             EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CC
Confidence            3799999999999999999998665321110    011111                      11223445544433 24


Q ss_pred             cceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCceeEEEEcCCCcEEEEEcc
Q 045370           55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--------YPQAVTAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~  126 (350)
                      ..+..+.+|++.|.++--+  ++-.+++|+.|.+|++||++-..++..+.        ....|.+++++|.|++|++|-.
T Consensus       174 ~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  174 QGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             CcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence            5567788999999988433  56889999999999999999888887754        2357999999999999999999


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc----eEEEEeccCCCc
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR----VSIRRFNHKKGV  200 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~  200 (350)
                      |....+||++          ....+..+..|...|.|+.|+|..  +++++.|..|++-|+...    -++.....|...
T Consensus       252 dssc~lydir----------g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  252 DSSCMLYDIR----------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             CCceEEEEee----------CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            9999999999          556666899999999999999987  999999999999998641    223344568888


Q ss_pred             eeEEEEEccCCeEEeeecC
Q 045370          201 VTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       201 v~~l~~~~~~~~l~~~~~~  219 (350)
                      +..+.|+|..--+++.+.|
T Consensus       322 ~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             eEEEEecCccceeeeccCc
Confidence            8889999998777755554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2.1e-22  Score=162.65  Aligned_cols=206  Identities=19%  Similarity=0.236  Sum_probs=158.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      +..+.++-+..|.|.||++...........          +. .......++.++.+|...-.+++|+|.....+++|..
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~----------~~-~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc  232 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPG----------LE-VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC  232 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCcc----------cc-ccccccCceEEecccCccceeeecccccccccccCcc
Confidence            345677888899999999974211110000          00 0012456778889999999999998866566889988


Q ss_pred             CCcEEEEeCCCCceEEE----EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           86 DATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      -+.|++|...+|.....    ..|...|..++|+|.. ..|++|+.||+|+|||++.+.        .+.....+.|.+.
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--------~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--------KKAAVSTKAHNSD  304 (440)
T ss_pred             ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--------ccceeEeeccCCc
Confidence            89999999998765443    4589999999999965 588999999999999999752        2233345789999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCC---ceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTR---RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                      |+.|.|+...  |++|+.||+++|||++.   ++++..+..|..+|+++.|+|...-++.+++.+..+.+|+++-
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999877  99999999999999986   6789999999999999999998765555666666666665543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=178.13  Aligned_cols=189  Identities=25%  Similarity=0.269  Sum_probs=166.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee---ccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS---LEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~   77 (350)
                      ++.|+-|++.+.|...|+|-+|+++.                           +.....+   ..|..+|++++... -+
T Consensus       454 v~vs~CGNF~~IG~S~G~Id~fNmQS---------------------------Gi~r~sf~~~~ah~~~V~gla~D~-~n  505 (910)
T KOG1539|consen  454 VCVSFCGNFVFIGYSKGTIDRFNMQS---------------------------GIHRKSFGDSPAHKGEVTGLAVDG-TN  505 (910)
T ss_pred             EEEeccCceEEEeccCCeEEEEEccc---------------------------CeeecccccCccccCceeEEEecC-CC
Confidence            46788999999999999999999993                           3333333   68999999999855 45


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ..+++++.+|.+++||..+...+..+.....+.++.++.....++.+..|-.|.++|..          ....++.+.+|
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~----------t~kvvR~f~gh  575 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV----------TRKVVREFWGH  575 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch----------hhhhhHHhhcc
Confidence            77999999999999999999988889889999999999999999999999999999998          45566689999


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .+.|++++|||+|  |++++.|++|++||+.++.++-.+. -..+.+++.|+|+|.+||++..+..-+.+|.-
T Consensus       576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            9999999999999  9999999999999999999998876 56789999999999999999988766666643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=4.9e-22  Score=177.06  Aligned_cols=182  Identities=29%  Similarity=0.411  Sum_probs=157.1

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|..-+.+|++|+.|.+++|||..                           .+.+...+.+|...|.++..   .+..++
T Consensus       256 ~~~~~~~~lvsgS~D~t~rvWd~~---------------------------sg~C~~~l~gh~stv~~~~~---~~~~~~  305 (537)
T KOG0274|consen  256 AFPSGGDKLVSGSTDKTERVWDCS---------------------------TGECTHSLQGHTSSVRCLTI---DPFLLV  305 (537)
T ss_pred             EEecCCCEEEEEecCCcEEeEecC---------------------------CCcEEEEecCCCceEEEEEc---cCceEe
Confidence            344457899999999999999988                           68899999999999999976   446688


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +|+.|.+|++|++.++..+..+. |.++|+++..+  +.++++|+.||.|.+||+.+          .+.+..+.+|...
T Consensus       306 sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~----------~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  306 SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT----------GKCLKSLSGHTGR  373 (537)
T ss_pred             eccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh----------ceeeeeecCCcce
Confidence            89999999999999999999988 99999999996  89999999999999999994          5556689999999


Q ss_pred             eEEEEecC-CeEEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          161 ITALAFSA-SHLISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       161 i~~~~~~~-~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      |+++.+.+ +.+++|+.|+.|++||+++. +++..+.+|.+.+.++.+  .+++|++++.|+ .+++|+.
T Consensus       374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~-~Ik~WD~  440 (537)
T KOG0274|consen  374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG-TIKLWDA  440 (537)
T ss_pred             EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc-cEEEeec
Confidence            99999999 66999999999999999999 999999999888855444  577888777665 4444433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=9.7e-22  Score=178.33  Aligned_cols=216  Identities=17%  Similarity=0.201  Sum_probs=164.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|||||++||+||+|+.|.||.... . ......+.++.    .   .....-+.+..+.+|...|..++|.| ++.++
T Consensus        75 VR~S~dG~~lAsGSDD~~v~iW~~~~-~-~~~~~fgs~g~----~---~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~l  144 (942)
T KOG0973|consen   75 VRFSPDGSYLASGSDDRLVMIWERAE-I-GSGTVFGSTGG----A---KNVESWKVVSILRGHDSDVLDVNWSP-DDSLL  144 (942)
T ss_pred             EEECCCCCeEeeccCcceEEEeeecc-c-CCccccccccc----c---cccceeeEEEEEecCCCccceeccCC-CccEE
Confidence            46999999999999999999999873 1 11101100000    0   00112345667789999999999977 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc-------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV-------------  146 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------  146 (350)
                      ++++.|++|.+|+..+...+..+ .|...|..+.|+|-|++|++-+.|++|++|....+........             
T Consensus       145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR  224 (942)
T ss_pred             EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence            99999999999999999877775 5999999999999999999999999999999765442211000             


Q ss_pred             -----------------------------ccccceeeeccCCceEEEEecCC-------------------eEEEEeCCC
Q 045370          147 -----------------------------GEDQHSVLKGHNGSITALAFSAS-------------------HLISASEDK  178 (350)
Q Consensus       147 -----------------------------~~~~~~~~~~~~~~i~~~~~~~~-------------------~l~s~~~dg  178 (350)
                                                   .-+.-..+-||.+++.+++|+|.                   -+|+|+.|+
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence                                         00111256789999999999862                   178999999


Q ss_pred             cEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          179 TVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       179 ~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +|.||.....+++..+. -...+|..++|+|||..|+++|.|+.+..+.
T Consensus       305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             cEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            99999998888776654 3466899999999999999899987766554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=3.1e-22  Score=161.69  Aligned_cols=189  Identities=22%  Similarity=0.285  Sum_probs=146.8

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|||-- ..|+||.--+.|++|...++.                        -..-...+.+|+..|-.+.|+|.....
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~------------------------W~vd~~Pf~gH~~SVEDLqWSptE~~v  272 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGS------------------------WKVDQRPFTGHTKSVEDLQWSPTEDGV  272 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCc------------------------eeecCccccccccchhhhccCCccCce
Confidence            5788832 357888888899999877310                        011123356799999999999988999


Q ss_pred             EEEEeCCCcEEEEeCCCC---ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSG---ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      |++||.||+|+|||++.+   .++..-.|.+.|+.|.|+....+|++|+.||.+.|||++..+       ...++..++.
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-------~~~pVA~fk~  345 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-------SGQPVATFKY  345 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-------CCCcceeEEe
Confidence            999999999999999988   455556799999999999988899999999999999999765       3467789999


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE--------E--------EEeccCC--CceeEEEEEccCC-eEE
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRVS--------I--------RRFNHKK--GVVTNLVVIRQSS-LLS  214 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~--------~--------~~~~~~~--~~v~~l~~~~~~~-~l~  214 (350)
                      |..+|+++.|+|..   |++++.|..|.+||+..-.-        .        .-+..|.  ..+..|.|+++-. +++
T Consensus       346 Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv  425 (440)
T KOG0302|consen  346 HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV  425 (440)
T ss_pred             ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence            99999999999976   99999999999999853111        1        1112243  3578888998754 555


Q ss_pred             eeecCc
Q 045370          215 EVSNCQ  220 (350)
Q Consensus       215 ~~~~~~  220 (350)
                      +++.++
T Consensus       426 sTa~dG  431 (440)
T KOG0302|consen  426 STAIDG  431 (440)
T ss_pred             Eecccc
Confidence            555554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=4.4e-22  Score=180.55  Aligned_cols=244  Identities=17%  Similarity=0.243  Sum_probs=179.7

Q ss_pred             CeecCCCCEEEEEe--CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGS--DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      |+.+|||..++||+  .||.++||+.+.........               .......+.....|.+.|.|+.|++ ++.
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~---------------~~~l~k~l~~m~~h~~sv~CVR~S~-dG~   82 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK---------------NENLPKHLCTMDDHDGSVNCVRFSP-DGS   82 (942)
T ss_pred             EEecCCceeEecCCccccccceeeccccccchhhhh---------------hcccchhheeeccccCceeEEEECC-CCC
Confidence            46799999999999  89999999988322111100               0113556777889999999999955 889


Q ss_pred             EEEEEeCCCcEEEEeCCC-------C-----------ceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           79 FFVSSSLDATCKVWDLGS-------G-----------ILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~-------~-----------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      +||+|++|+.|.+|+...       |           ++... ..|+..|..++|+|++.++++++.|++|.+|+.+++ 
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-  161 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-  161 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-
Confidence            999999999999999872       1           12222 358999999999999999999999999999999964 


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC------CCceeEEEEEccCC
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK------KGVVTNLVVIRQSS  211 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~  211 (350)
                               +....+.+|.+.|..+.|.|-|  |++-+.|++|+||++.+....+.+..+      ...+..+.|||||+
T Consensus       162 ---------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  162 ---------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             ---------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence                     4455889999999999999999  999999999999999888888877543      23588999999999


Q ss_pred             eEEeeecC------c-----cccccc-cCCccccCCCCcccccc-------------c-eEEeeccccCCCCcccccccc
Q 045370          212 LLSEVSNC------Q-----RKLKKD-RMPSLEKYPQLNSLSME-------------M-VILLQSCFFNKDDQCSINIRR  265 (350)
Q Consensus       212 ~l~~~~~~------~-----~~~~~~-~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~v~~~~  265 (350)
                      +|++..+-      .     ..|... ++-.....+.+..+.+.             . ...+....++.|+.++||.+.
T Consensus       233 ~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~  312 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA  312 (942)
T ss_pred             eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence            99976542      1     122211 11111222222222111             1 233445568889999999887


Q ss_pred             cchhh
Q 045370          266 TKSLF  270 (350)
Q Consensus       266 ~~~~~  270 (350)
                      ....+
T Consensus       313 ~~RPl  317 (942)
T KOG0973|consen  313 LPRPL  317 (942)
T ss_pred             CCCch
Confidence            76643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1e-21  Score=149.27  Aligned_cols=180  Identities=22%  Similarity=0.287  Sum_probs=139.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +.+.|...|++|+.|..|.+||++                           +++..+.+.+|.+.|+.+.|+. +...++
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~---------------------------TGkv~Rr~rgH~aqVNtV~fNe-esSVv~  117 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVN---------------------------TGKVDRRFRGHLAQVNTVRFNE-ESSVVA  117 (307)
T ss_pred             cccccccccccCCCCceEEEEEcc---------------------------cCeeeeecccccceeeEEEecC-cceEEE
Confidence            456788899999999999999999                           6889999999999999999955 678899


Q ss_pred             EEeCCCcEEEEeCCCCc--eEEEEe---------------------------------------cCCceeEEEEcCCCcE
Q 045370           82 SSSLDATCKVWDLGSGI--LIQTQV---------------------------------------YPQAVTAIAFHPGEQL  120 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~--~~~~~~---------------------------------------~~~~v~~~~~~~~~~~  120 (350)
                      +|+.|.++++||.++..  +++.+.                                       ...+|++++|+++++.
T Consensus       118 SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc  197 (307)
T KOG0316|consen  118 SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC  197 (307)
T ss_pred             eccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence            99999999999987542  222211                                       1246777777777777


Q ss_pred             EEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE--ecCCe--EEEEeCCCcEEEEECCCceEEEEecc
Q 045370          121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA--FSASH--LISASEDKTVCLWDVTRRVSIRRFNH  196 (350)
Q Consensus       121 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~  196 (350)
                      .++++.|+++++.|-.+++.          +...++|...-..+.  ++...  +++|++||.|++||+.....+..+..
T Consensus       198 ~La~~l~stlrLlDk~tGkl----------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  198 SLASSLDSTLRLLDKETGKL----------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             EEEeeccceeeecccchhHH----------HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence            77777777777777765443          336677776554443  33333  99999999999999999999999998


Q ss_pred             CCCc-eeEEEEEccCCeEEeeecC
Q 045370          197 KKGV-VTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       197 ~~~~-v~~l~~~~~~~~l~~~~~~  219 (350)
                      +... +.+++++|.-..|+++...
T Consensus       268 ~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  268 VSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             CCceeEEeeecccCccceeEecCC
Confidence            8777 8999999997655555443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=4e-21  Score=171.29  Aligned_cols=183  Identities=26%  Similarity=0.337  Sum_probs=157.5

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCcEEEEEeC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      +.++++++.|++|++||..                           ....+.. +.+|.+.|+++++.. .+.++++|+.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~---------------------------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~  269 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLN---------------------------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGST  269 (537)
T ss_pred             cCeEEecCCCceeEEeecc---------------------------cceEEEeeccCCCCCceeEEEec-CCCEEEEEec
Confidence            5688999999999999998                           4555555 899999999999965 6788999999


Q ss_pred             CCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370           86 DATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      |.++++||+.+|.+...+. |...+.++..  ....+++|+.|.+|++|++.++          ..+..+.+|.++|+++
T Consensus       270 D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCV  337 (537)
T ss_pred             CCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc----------ceEEEeccccccEEEE
Confidence            9999999999999999976 8888988887  4568888999999999999954          4444777799999999


Q ss_pred             EecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370          165 AFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL  231 (350)
Q Consensus       165 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  231 (350)
                      ..+.+.+++|+.|++|++||+.++++++.+.+|.+.|.++.+.+. ..+++|+-| ..++.|++...
T Consensus       338 ~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~~IkvWdl~~~  402 (537)
T KOG0274|consen  338 QLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-TTIKVWDLRTK  402 (537)
T ss_pred             EecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-cceEeecCCch
Confidence            999666999999999999999999999999999999999988776 788878877 55556655544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.2e-21  Score=152.08  Aligned_cols=255  Identities=20%  Similarity=0.244  Sum_probs=166.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc----------cccccc-----------E--EEeecccccc--
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS----------DQLDQR-----------L--IEMELRSLRS--   55 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~~-----------~--~~~~~~~~~~--   55 (350)
                      |+||.||++|||++.|++|+||++..............          ...+.+           +  +.+.....+.  
T Consensus        92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~  171 (420)
T KOG2096|consen   92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS  171 (420)
T ss_pred             eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence            68999999999999999999999986333221111110          011111           1  1111110010  


Q ss_pred             -------ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccC
Q 045370           56 -------LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        56 -------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                             .......|.-.+..+-. ..++.++++++.|..|.+|++. |+.+..+. ....-+..+++|+|+++++++--
T Consensus       172 ~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  172 HHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             cccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence                   01122345555555543 4467899999999999999999 88888765 34456788999999999999999


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc-------eEEEEe----
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR-------VSIRRF----  194 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~-------~~~~~~----  194 (350)
                      -.|++|.+-..+-...  .....+..+.+|...|..++|+|+.  +++.+.||+++|||+.-.       +.+++.    
T Consensus       250 pDVkVwE~~f~kdG~f--qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl  327 (420)
T KOG2096|consen  250 PDVKVWEPIFTKDGTF--QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL  327 (420)
T ss_pred             CCceEEEEEeccCcch--hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcch
Confidence            9999999864332211  1234556889999999999999998  999999999999998532       222222    


Q ss_pred             ccCCCceeEEEEEccCCeEEeeecCc-cccccccC---Ccc----ccCCCCccccccceEEeeccccCCCCcccccc
Q 045370          195 NHKKGVVTNLVVIRQSSLLSEVSNCQ-RKLKKDRM---PSL----EKYPQLNSLSMEMVILLQSCFFNKDDQCSINI  263 (350)
Q Consensus       195 ~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  263 (350)
                      ....+....+.++|+|+.|+.+.+.. ..+...+.   +.+    ...+.+.+++.+++.+....    +..+.+..
T Consensus       328 ~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG----dr~vrv~~  400 (420)
T KOG2096|consen  328 HAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG----DRYVRVIR  400 (420)
T ss_pred             hhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec----ceeeeeec
Confidence            11223344899999999998776643 33333322   222    33466778888887655332    55555444

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.5e-20  Score=148.28  Aligned_cols=201  Identities=18%  Similarity=0.172  Sum_probs=149.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~   79 (350)
                      +.|++-|+++|||+.|++|+|||...                       ....-.+......|.+.|..+.|.+|+ |..
T Consensus        19 Vs~D~~GRRmAtCSsDq~vkI~d~~~-----------------------~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqv   75 (361)
T KOG2445|consen   19 VSFDFYGRRMATCSSDQTVKIWDSTS-----------------------DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQV   75 (361)
T ss_pred             eeecccCceeeeccCCCcEEEEeccC-----------------------CCCceEEeeeEEecCCcEEEEEecCccccce
Confidence            46889999999999999999999752                       112334566778999999999998765 688


Q ss_pred             EEEEeCCCcEEEEeCCCC-------ceEE--E-EecCCceeEEEEcC--CCcEEEEEccCCeEEEEeCCccccccc----
Q 045370           80 FVSSSLDATCKVWDLGSG-------ILIQ--T-QVYPQAVTAIAFHP--GEQLLFAGSIDGRIFVSPLKFLLLEDH----  143 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~-------~~~~--~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~----  143 (350)
                      +|+++.|+++.||.-...       +.+.  + ......|+.++|.|  -|-.+++++.||.++||+.........    
T Consensus        76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence            999999999999986321       1111  1 23567899999999  467899999999999998643210000    


Q ss_pred             -------------------------------ccc----------------------ccccceeeeccCCceEEEEecCCe
Q 045370          144 -------------------------------FIV----------------------GEDQHSVLKGHNGSITALAFSASH  170 (350)
Q Consensus       144 -------------------------------~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~  170 (350)
                                                     +..                      .-..+..+.+|+.+|++++|.|+-
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence                                           000                      001222566889999999999974


Q ss_pred             ------EEEEeCCCcEEEEECCCc--------------------eEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          171 ------LISASEDKTVCLWDVTRR--------------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       171 ------l~s~~~dg~v~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                            ||+++.|| |+||.+...                    +.+..+..|.+.|..+.|+-.|..|++++.|+ .++
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG-~VR  313 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG-CVR  313 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc-eee
Confidence                  99999999 999998731                    23556678999999999999999999666554 444


Q ss_pred             cc
Q 045370          225 KD  226 (350)
Q Consensus       225 ~~  226 (350)
                      +|
T Consensus       314 LW  315 (361)
T KOG2445|consen  314 LW  315 (361)
T ss_pred             eh
Confidence            44

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.88  E-value=9.4e-22  Score=160.60  Aligned_cols=182  Identities=21%  Similarity=0.232  Sum_probs=154.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|.+++.++++++.|+.+++|++.                           ......++.+|++.|+++.|.... ..+
T Consensus       225 ~d~d~~~~~~iAas~d~~~r~Wnvd---------------------------~~r~~~TLsGHtdkVt~ak~~~~~-~~v  276 (459)
T KOG0288|consen  225 IDFDSDNKHVIAASNDKNLRLWNVD---------------------------SLRLRHTLSGHTDKVTAAKFKLSH-SRV  276 (459)
T ss_pred             eeecCCCceEEeecCCCceeeeecc---------------------------chhhhhhhcccccceeeehhhccc-cce
Confidence            5789999999999999999999999                           577788899999999999986533 449


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++|+.|.+|++||+....+..+.-....+..|+..  ...+++|-.|+.|++||.+.          .........+. .
T Consensus       277 Vsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs----------~~~~~sv~~gg-~  343 (459)
T KOG0288|consen  277 VSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS----------ADKTRSVPLGG-R  343 (459)
T ss_pred             eeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccC----------CceeeEeecCc-c
Confidence            99999999999999999888887667777778775  66888999999999999994          34444555554 9


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEeeecCcccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      |+++..++++  +.+++.|.++.+.|+++......+.+    .....+.++|||++.|+++||.++.+.
T Consensus       344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~  412 (459)
T KOG0288|consen  344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY  412 (459)
T ss_pred             eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence            9999999999  88889999999999999988887753    223589999999999999888876554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.9e-21  Score=154.07  Aligned_cols=217  Identities=19%  Similarity=0.361  Sum_probs=167.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcc----cc--c-----cccccccccccc-cc-cEEEeeccccccceeeeccccCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTR----LL--K-----QTSELMHHSDQL-DQ-RLIEMELRSLRSLLHYSLEHKSSV   67 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~----~~--~-----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~h~~~v   67 (350)
                      |.|++.+.++++++.|++..||...-    +.  .     ...+..+..... +. .-...+......++..+.+|...|
T Consensus       196 ikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV  275 (481)
T KOG0300|consen  196 IKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV  275 (481)
T ss_pred             EEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence            57999999999999999999997431    11  0     000111110000 00 000111222345677789999999


Q ss_pred             eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .+..|.. ++..++++++|.+-.+||++++.++..+ +|....+.++-+|..+++++.+.|.+.++||++.         
T Consensus       276 ~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe---------  345 (481)
T KOG0300|consen  276 SACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE---------  345 (481)
T ss_pred             Eehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh---------
Confidence            9999977 6788999999999999999999999885 5889999999999999999999999999999993         


Q ss_pred             ccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCc-eEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                      ....+..|.+|...|+++.|..+. +++|+.|.+|++||+++. .++.++. ..+++..++.+..+++++ --.|.+.++
T Consensus       346 aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA-iPhDNRqvR  423 (481)
T KOG0300|consen  346 AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA-IPHDNRQVR  423 (481)
T ss_pred             hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE-eccCCceEE
Confidence            345556899999999999999888 999999999999999984 4677776 578899999998888887 555666666


Q ss_pred             cccCC
Q 045370          225 KDRMP  229 (350)
Q Consensus       225 ~~~~~  229 (350)
                      +.++.
T Consensus       424 lfDln  428 (481)
T KOG0300|consen  424 LFDLN  428 (481)
T ss_pred             EEecC
Confidence            65443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.5e-22  Score=173.27  Aligned_cols=187  Identities=19%  Similarity=0.244  Sum_probs=149.8

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|++-. .+|+|||.||+|++||++                           ...-..++.+..+.|.++.|+|..+..
T Consensus       139 ldfh~tep~iliSGSQDg~vK~~DlR---------------------------~~~S~~t~~~nSESiRDV~fsp~~~~~  191 (839)
T KOG0269|consen  139 LDFHSTEPNILISGSQDGTVKCWDLR---------------------------SKKSKSTFRSNSESIRDVKFSPGYGNK  191 (839)
T ss_pred             eeeccCCccEEEecCCCceEEEEeee---------------------------cccccccccccchhhhceeeccCCCce
Confidence            4566644 689999999999999999                           456666777789999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCce-EEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           80 FVSSSLDATCKVWDLGSGIL-IQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      |+++...|.+++||++.... ... ..|.++|.|+.|+|++.+|++|+.|+.|+|||.........        .++ ..
T Consensus       192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~--------~tI-nT  262 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK--------HTI-NT  262 (839)
T ss_pred             EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce--------eEE-ee
Confidence            99999999999999997542 222 46999999999999999999999999999999985432211        111 23


Q ss_pred             CCceEEEEecCCe---EEEEe--CCCcEEEEECCCce-EEEEeccCCCceeEEEEEcc-CCeEEeeecCcccc
Q 045370          158 NGSITALAFSASH---LISAS--EDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNCQRKL  223 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~--~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~~~~~  223 (350)
                      ..++.++.|-|..   |++++  .|-.|+|||++..- +..++..|...++.++|... ...+.+++.|+.+.
T Consensus       263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            4789999999987   88777  47899999998754 45677889999999999763 45666677765443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7e-23  Score=177.99  Aligned_cols=186  Identities=23%  Similarity=0.361  Sum_probs=154.9

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ++.+++|+.|..+-+|.+.                           .......+.+|..+|.++.|.. ...++++|+.+
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~---------------------------kp~~i~S~~~hespIeSl~f~~-~E~Llaagsas   91 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIG---------------------------KPNAITSLTGHESPIESLTFDT-SERLLAAGSAS   91 (825)
T ss_pred             ceeeccCCCceeecccccc---------------------------CCchhheeeccCCcceeeecCc-chhhhcccccC
Confidence            3556666666666666655                           2334445789999999999966 55789999999


Q ss_pred             CcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           87 ATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      |+|++||+..++.++. ..|...+.++.|+|-+.+++.|+.|+.+.+||.+.          ..+...+.+|...+.++.
T Consensus        92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------KGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------cCceeeecCCcceeEEEe
Confidence            9999999999988887 46889999999999999999999999999999994          344457788999999999


Q ss_pred             ecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcc
Q 045370          166 FSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL  231 (350)
Q Consensus       166 ~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  231 (350)
                      |+|+|  +++|++|..++|||+..|+.+..|..|.+.+.++.|+|..-+++.|+.+ +.+++|++..+
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d-~tv~f~dletf  228 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD-RTVRFWDLETF  228 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC-ceeeeecccee
Confidence            99999  8899999999999999999999999999999999999998888866554 55556655443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.9e-21  Score=152.72  Aligned_cols=191  Identities=20%  Similarity=0.212  Sum_probs=153.4

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cEEEEE
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TFFVSS   83 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~   83 (350)
                      -+|.|+||||.|-+|+|||+.                           .......+..|.+.|+++.|.++-. ..|++|
T Consensus        51 Vs~~~~aSGssDetI~IYDm~---------------------------k~~qlg~ll~HagsitaL~F~~~~S~shLlS~  103 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMR---------------------------KRKQLGILLSHAGSITALKFYPPLSKSHLLSG  103 (362)
T ss_pred             ecceeEeccCCCCcEEEEecc---------------------------chhhhcceeccccceEEEEecCCcchhheeee
Confidence            368999999999999999999                           5677778889999999999987643 479999


Q ss_pred             eCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-----------cccccc--
Q 045370           84 SLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-----------FIVGED--  149 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~--  149 (350)
                      +.||.|.+|+.....++..+. |.+.|+.++.||.+++.++.+.|+.++.||+-.+.....           +...+.  
T Consensus       104 sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  104 SDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF  183 (362)
T ss_pred             cCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence            999999999999998888865 888899999999999999999999999999976652211           000010  


Q ss_pred             ------cceee----------eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE--EccC
Q 045370          150 ------QHSVL----------KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV--IRQS  210 (350)
Q Consensus       150 ------~~~~~----------~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~  210 (350)
                            .+..+          -..+..+.|+.|-..+ |++|+.|+.|.+||..+..+...+.+|...|.++.+  .|++
T Consensus       184 ~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~  263 (362)
T KOG0294|consen  184 VVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH  263 (362)
T ss_pred             EEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence                  00000          1122447777777666 999999999999999999999999999999999985  3667


Q ss_pred             CeEEeeecCccc
Q 045370          211 SLLSEVSNCQRK  222 (350)
Q Consensus       211 ~~l~~~~~~~~~  222 (350)
                      .+|+++++|+.+
T Consensus       264 ~~lvTaSSDG~I  275 (362)
T KOG0294|consen  264 EYLVTASSDGFI  275 (362)
T ss_pred             eEEEEeccCceE
Confidence            899988888643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=1.2e-20  Score=145.57  Aligned_cols=179  Identities=17%  Similarity=0.163  Sum_probs=153.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+|+|++++.++.|..|...|..                            .............+..++|+. .++++
T Consensus       112 i~wsp~g~~~~~~~kdD~it~id~r----------------------------~~~~~~~~~~~~e~ne~~w~~-~nd~F  162 (313)
T KOG1407|consen  112 ITWSPDGEYIAVGNKDDRITFIDAR----------------------------TYKIVNEEQFKFEVNEISWNN-SNDLF  162 (313)
T ss_pred             EEEcCCCCEEEEecCcccEEEEEec----------------------------ccceeehhcccceeeeeeecC-CCCEE
Confidence            4799999999999999999999988                            222333344566778888875 45555


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +.....|+|.|.....-+++..+. |+..+.||.|+|+|++|++|+.|-.+-+||+..          .-..+.+.-+.-
T Consensus       163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----------LiC~R~isRldw  232 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----------LICERCISRLDW  232 (313)
T ss_pred             EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH----------hhhheeeccccC
Confidence            555557999999999888888864 999999999999999999999999999999983          445558888999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +|..+.|+.+|  ||+|++|..|-|=++.+|..+..++ +.++...++|+|...+||-++.+
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            99999999999  9999999999999999999999998 78999999999999999977765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=155.07  Aligned_cols=187  Identities=21%  Similarity=0.256  Sum_probs=157.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~   79 (350)
                      |.||.|...||+|+.||.|+||.++                           ++.+++.+ .+|+..|+|+.|+. ++..
T Consensus       269 i~FSRDsEMlAsGsqDGkIKvWri~---------------------------tG~ClRrFdrAHtkGvt~l~FSr-D~Sq  320 (508)
T KOG0275|consen  269 ISFSRDSEMLASGSQDGKIKVWRIE---------------------------TGQCLRRFDRAHTKGVTCLSFSR-DNSQ  320 (508)
T ss_pred             EeecccHHHhhccCcCCcEEEEEEe---------------------------cchHHHHhhhhhccCeeEEEEcc-Ccch
Confidence            5799999999999999999999999                           56666665 49999999999966 6677


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++++.|.++++.-+.+|+++..+ +|...|+.+.|.++|.++++++.||+|++|+..+.++...+...        +..
T Consensus       321 iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~--------~~d  392 (508)
T KOG0275|consen  321 ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL--------GTD  392 (508)
T ss_pred             hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC--------CCc
Confidence            999999999999999999999886 48899999999999999999999999999999977665433222        345


Q ss_pred             CceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec---cCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          159 GSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                      .+|+.+..-|..   ++++...++|+|.++. |+.++++.   ...+...+.+.+|.|.++.+.+.|...+.
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYC  463 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYC  463 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEE
Confidence            678888877765   9999999999999986 78888885   23556778889999999998887765543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.87  E-value=1.2e-20  Score=149.00  Aligned_cols=180  Identities=16%  Similarity=0.243  Sum_probs=140.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+|....|++|+.|++|++||+...                         .-+..........+|.++.|+| .|.++
T Consensus       178 l~FHPre~ILiS~srD~tvKlFDfsK~-------------------------saKrA~K~~qd~~~vrsiSfHP-sGefl  231 (430)
T KOG0640|consen  178 LDFHPRETILISGSRDNTVKLFDFSKT-------------------------SAKRAFKVFQDTEPVRSISFHP-SGEFL  231 (430)
T ss_pred             eeecchhheEEeccCCCeEEEEecccH-------------------------HHHHHHHHhhccceeeeEeecC-CCceE
Confidence            579999999999999999999999831                         1122223345678999999966 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee-e
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL-K  155 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~  155 (350)
                      +.|....++++||+++-++...-    .|.+.|+++.+++.+++.++|+.||.|++||=-+..+..          .+ .
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~----------t~~~  301 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR----------TIGN  301 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH----------HHHh
Confidence            99999999999999999887763    488899999999999999999999999999976443332          22 2


Q ss_pred             ccC-CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC--C---ceeEEEEEccCCeEEee
Q 045370          156 GHN-GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK--G---VVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       156 ~~~-~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~l~~~~~~~~l~~~  216 (350)
                      .|. ..|.+..|..++  +++.+.|..+++|.+.+++++.++.+..  +   .-+...|+....+++.-
T Consensus       302 AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p  370 (430)
T KOG0640|consen  302 AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP  370 (430)
T ss_pred             hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcc
Confidence            454 468888999998  9999999999999999999998886421  1   12333455555555533

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=1.4e-21  Score=157.17  Aligned_cols=202  Identities=14%  Similarity=0.156  Sum_probs=158.9

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccc-------------cccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHH-------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      ..+++++.|.+|+.|.++.+.  .....+.             .....+..+++....-..++..+.-..+.|.++.|+|
T Consensus       120 ~~~~tvgdDKtvK~wk~~~~p--~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDGPP--LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             cceEEecCCcceeeeeccCCc--ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence            678899999999999977421  1111111             0111233333333333455666677788999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .....|++|+.|++|.+||++++.++........-+.|+|+|.+-.|.+|+.|..++.||++..         ..++...
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l---------~~p~~v~  268 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL---------SRPLNVH  268 (433)
T ss_pred             CcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhh---------cccchhh
Confidence            8889999999999999999999999999887788889999998888999999999999999963         4555688


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+|...|.++.|+|.|  +++||.|.+|+||..+.+..-..+. .-...|.++.||.|.+++++||.+.
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            8999999999999999  9999999999999998776544332 2345799999999999999888774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.5e-20  Score=154.98  Aligned_cols=185  Identities=20%  Similarity=0.246  Sum_probs=150.2

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      +.|||||.|.+|++||+.                           .+.+...+..|.+.|.++.|++..+.++++|+.|+
T Consensus       257 nVLaSgsaD~TV~lWD~~---------------------------~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~  309 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVD---------------------------TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDG  309 (463)
T ss_pred             eeEEecCCCceEEEEEcC---------------------------CCCcceehhhcCCceeEEEecCCCceEEEeccccc
Confidence            579999999999999999                           67888888899999999999999999999999999


Q ss_pred             cEEEEeCCCC-ceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           88 TCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        88 ~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      +|.+.|.+.. ..-..+...+.|..++|+|.. ..+++++.||.|+-+|+|+         ..+++..+..|.++|.++.
T Consensus       310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~---------~~~~vwt~~AHd~~ISgl~  380 (463)
T KOG0270|consen  310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN---------PGKPVWTLKAHDDEISGLS  380 (463)
T ss_pred             eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC---------CCCceeEEEeccCCcceEE
Confidence            9999999953 333346788999999999955 5777888999999999996         4577889999999999999


Q ss_pred             ecCCe---EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          166 FSASH---LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       166 ~~~~~---l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +++..   +++++.|+.|++|++..-.  .++.-.-..+...|.++.|+-.++++.++...++++|+.
T Consensus       381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  381 VNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            98765   9999999999999986533  333222223457788888887766655555445555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=1.1e-20  Score=163.66  Aligned_cols=176  Identities=24%  Similarity=0.295  Sum_probs=149.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      |+.+|++|+.|++|.+|...                           ...++.++.+|...|.++.... ++. +++||+
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~---------------------------~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSW  120 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLS---------------------------QAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSW  120 (745)
T ss_pred             cCcceEeecccceEEEEecC---------------------------CCCchhhhhccccceeeeecCC-cCc-eEeccc
Confidence            44568999999999999998                           5788899999999999997644 333 899999


Q ss_pred             CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      |.++++|....-... ..+|+..|.++..-|.+ .+++|+.|..|++|.-            ....+.+.+|...|..++
T Consensus       121 D~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~------------~~~l~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  121 DSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG------------GTLLKTFSGHTDCVRGLA  186 (745)
T ss_pred             ccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC------------CchhhhhccchhheeeeE
Confidence            999999987643222 35799999999999877 8999999999999974            344558999999999999


Q ss_pred             ecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          166 FSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       166 ~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +-++. +++++.||.|++|++ ++.++.++.+|...+.++...+++..+++++.|. .+++|
T Consensus       187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr-tlriW  246 (745)
T KOG0301|consen  187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR-TLRIW  246 (745)
T ss_pred             EecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc-eEEEe
Confidence            99996 999999999999999 7899999999999999999888888888777664 33344

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=1.1e-21  Score=164.20  Aligned_cols=188  Identities=17%  Similarity=0.235  Sum_probs=146.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee--ccccCCceEEEEeeCCCcE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS--LEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~   79 (350)
                      .+|...++++||+. |.|+|||+....                        ...++..+  ......|.++..++ ++..
T Consensus       426 tIS~~trhVyTgGk-gcVKVWdis~pg------------------------~k~PvsqLdcl~rdnyiRSckL~p-dgrt  479 (705)
T KOG0639|consen  426 TISNPTRHVYTGGK-GCVKVWDISQPG------------------------NKSPVSQLDCLNRDNYIRSCKLLP-DGRT  479 (705)
T ss_pred             EecCCcceeEecCC-CeEEEeeccCCC------------------------CCCccccccccCcccceeeeEecC-CCce
Confidence            46777889999986 789999998321                        11122221  22456777877766 6778


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      |++|+.-.+|.|||+..........   ....+.+++.+||.+..++++.||.|.|||+.          ....++.+.+
T Consensus       480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh----------nq~~VrqfqG  549 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----------NQTLVRQFQG  549 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----------cceeeecccC
Confidence            9999999999999998766544322   22357889999999999999999999999999          4566779999


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      |+..+.||.++++|  |.+|+-|.+||-||+++++.+.... ..+.|.++..+|++.+|++|-....++...
T Consensus       550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEe
Confidence            99999999999999  9999999999999999987665544 456778888888888888777766666554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.4e-20  Score=160.82  Aligned_cols=185  Identities=21%  Similarity=0.280  Sum_probs=151.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+. .+.||.|. ...|.+|+..                           ..........+.+.|+++.|++ ++.+|
T Consensus       183 ldWss-~n~laVal-g~~vylW~~~---------------------------s~~v~~l~~~~~~~vtSv~ws~-~G~~L  232 (484)
T KOG0305|consen  183 LDWSS-ANVLAVAL-GQSVYLWSAS---------------------------SGSVTELCSFGEELVTSVKWSP-DGSHL  232 (484)
T ss_pred             hhccc-CCeEEEEe-cceEEEEecC---------------------------CCceEEeEecCCCceEEEEECC-CCCEE
Confidence            46773 44666664 4679999988                           2333333333489999999966 78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++|..+|.|.|||..+.+.+..+.  |...|.+++|.  +..+.+|+.|+.|..+|++....         ....+.+|.
T Consensus       233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~  301 (484)
T KOG0305|consen  233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH---------VVSTLQGHR  301 (484)
T ss_pred             EEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh---------hhhhhhccc
Confidence            999999999999999887777753  78899999996  78999999999999999996432         222478899


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC-CeEEeeecC-ccccccc
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNC-QRKLKKD  226 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~-~~~~~~~  226 (350)
                      ..|..+.|++++  +|+|+.|+.+.|||.....++..+..|.++|..++|+|-. .+||+|++. ++.++.|
T Consensus       302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            999999999999  9999999999999999889999999999999999999975 577776654 6777777

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=4.5e-20  Score=142.83  Aligned_cols=219  Identities=17%  Similarity=0.141  Sum_probs=167.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +.+.+.++|+||+.|.++++||++                           .++.+..+ ....+|..+.|+. ++++++
T Consensus        59 Did~~s~~liTGSAD~t~kLWDv~---------------------------tGk~la~~-k~~~~Vk~~~F~~-~gn~~l  109 (327)
T KOG0643|consen   59 DIDWDSKHLITGSADQTAKLWDVE---------------------------TGKQLATW-KTNSPVKRVDFSF-GGNLIL  109 (327)
T ss_pred             EecCCcceeeeccccceeEEEEcC---------------------------CCcEEEEe-ecCCeeEEEeecc-CCcEEE
Confidence            445678899999999999999999                           45555444 4567889999976 455554


Q ss_pred             EEe-----CCCcEEEEeCC-------CCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370           82 SSS-----LDATCKVWDLG-------SGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE  148 (350)
Q Consensus        82 s~~-----~d~~v~vwd~~-------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  148 (350)
                      .+.     ..+.|.++|++       ...+... ..+...++.+.|.|-+.+|++|..||.|.+||++++.         
T Consensus       110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------  180 (327)
T KOG0643|consen  110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------  180 (327)
T ss_pred             EEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------
Confidence            443     34679999998       3444444 3466889999999999999999999999999999753         


Q ss_pred             ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc-ccc--
Q 045370          149 DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ-RKL--  223 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~-~~~--  223 (350)
                      +.+.....|...|+.|+++|+.  +++++.|.+-++||.++.++++++. ...||.+.+++|...+++.+++.. +-+  
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTT  259 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTT  259 (327)
T ss_pred             eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeee
Confidence            2233556788899999999999  9999999999999999999999998 467999999999888777666531 100  


Q ss_pred             --------ccc-----------cCCccccCCCCccccccceEEeeccccCCCCccccc
Q 045370          224 --------KKD-----------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSIN  262 (350)
Q Consensus       224 --------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  262 (350)
                              ...           .+...-.++.+..+++++...+   .|..+|.+++-
T Consensus       260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs---SGGEDG~VR~h  314 (327)
T KOG0643|consen  260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS---SGGEDGYVRLH  314 (327)
T ss_pred             ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc---cCCCCceEEEE
Confidence                    000           3344455677888888887666   66678888665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.9e-20  Score=143.10  Aligned_cols=183  Identities=18%  Similarity=0.203  Sum_probs=141.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS   84 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~   84 (350)
                      -|.+||+++.||.|.||.-+++                         .-........|...|++++|-|.+ +-.|++++
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g-------------------------~w~k~~e~~~h~~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENG-------------------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCC-------------------------chhhhhhhhhhcccceeecccccccceEEEEee
Confidence            6899999999999999987731                         122344567899999999997754 35688999


Q ss_pred             CCCcEEEEeCCCC-ceE-E--EEecCCceeEEEEcCC---C-----------cEEEEEccCCeEEEEeCCcccccccccc
Q 045370           85 LDATCKVWDLGSG-ILI-Q--TQVYPQAVTAIAFHPG---E-----------QLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        85 ~d~~v~vwd~~~~-~~~-~--~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .||.|.|.+++.. ... .  ...|.-.|++++|.|.   |           +.|++|+.|..|++|+..+....     
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-----  198 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-----  198 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----
Confidence            9999999998865 221 1  1458889999999985   4           56999999999999999865211     


Q ss_pred             ccccceeeeccCCceEEEEecCCe------EEEEeCCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~------l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                         .-..+.+|.+.|+.++|.|..      ++++++||+|.||-.+...   ....+.....++.++.||+.|.+|++++
T Consensus       199 ---~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~  275 (299)
T KOG1332|consen  199 ---LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG  275 (299)
T ss_pred             ---hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence               112588999999999999975      9999999999999766321   1112233557899999999999999777


Q ss_pred             cCcc
Q 045370          218 NCQR  221 (350)
Q Consensus       218 ~~~~  221 (350)
                      ++.+
T Consensus       276 GdNk  279 (299)
T KOG1332|consen  276 GDNK  279 (299)
T ss_pred             CCcE
Confidence            6643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.7e-19  Score=134.17  Aligned_cols=203  Identities=18%  Similarity=0.182  Sum_probs=143.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|.|.+.+.|+...+.+|-..........   .+..+         .............|.+.|.|.+|++ .++++
T Consensus        38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~---~hea~---------~~pp~v~~kr~khhkgsiyc~~ws~-~geli  104 (350)
T KOG0641|consen   38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRH---AHEAA---------KQPPSVLCKRNKHHKGSIYCTAWSP-CGELI  104 (350)
T ss_pred             EEecCCCceEEeccCCceEEEEccccccCccc---ccccc---------cCCCeEEeeeccccCccEEEEEecC-ccCeE
Confidence            58999999999999999999876552111100   00000         0001122334577999999999966 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE------EecCCceeEEEE----------------------------------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQT------QVYPQAVTAIAF----------------------------------------  114 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~------~~~~~~v~~~~~----------------------------------------  114 (350)
                      ++|+.|.+|++..++...+...      --|.+.|..++|                                        
T Consensus       105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence            9999999999987654322111      113333333333                                        


Q ss_pred             ------cCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec---cCCceEEEEecCCe--EEEEeCCCcEEEE
Q 045370          115 ------HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG---HNGSITALAFSASH--LISASEDKTVCLW  183 (350)
Q Consensus       115 ------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~--l~s~~~dg~v~iw  183 (350)
                            +-++-+|++|+.|.+|++||++-.........      .+.+   ....|.+++..|.|  |++|..|....+|
T Consensus       185 hilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~------~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  185 HILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             cEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC------cccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence                  22455688899999999999985443321111      1111   23679999999999  9999999999999


Q ss_pred             ECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          184 DVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       184 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      |++.++.+..+..|...|.++.|+|...++++++.|..+
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence            999999999999999999999999999999988877543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=4e-20  Score=155.24  Aligned_cols=191  Identities=16%  Similarity=0.198  Sum_probs=142.0

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCCc
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~   78 (350)
                      +|+|+. ..|+|++.||+++|||+.+...+.                       ..+..  ..+..-+++.++|++ ++.
T Consensus       275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------------------qVik~k~~~g~Rv~~tsC~~nr-dg~  330 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------------------QVIKTKPAGGKRVPVTSCAWNR-DGK  330 (641)
T ss_pred             ccccCcccceEEecCCCcEEEEecCCchhhe-----------------------eEEeeccCCCcccCceeeecCC-Ccc
Confidence            688976 578999999999999998422111                       11111  124456788888866 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE----EecCC--ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQT----QVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~----~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      +||+|+.||+|.+|+.........    -.|..  .|+||.|+++|++|++-+.|+.+++||+++.+..         +.
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp---------L~  401 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP---------LN  401 (641)
T ss_pred             hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc---------hh
Confidence            899999999999999865432222    23555  8999999999999999999999999999975422         22


Q ss_pred             eeec--cCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          153 VLKG--HNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       153 ~~~~--~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      ...+  ..-+-+.++|+|+.  +++|..      .|.+++||..+...++.+......|..+.|+|--+.++++++++..
T Consensus       402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~  481 (641)
T KOG0772|consen  402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTA  481 (641)
T ss_pred             hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCce
Confidence            2222  22355778999998  666643      4789999999999999998778899999999997777768777654


Q ss_pred             ccc
Q 045370          223 LKK  225 (350)
Q Consensus       223 ~~~  225 (350)
                      -.+
T Consensus       482 ~vy  484 (641)
T KOG0772|consen  482 HVY  484 (641)
T ss_pred             EEE
Confidence            433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=1.6e-20  Score=157.22  Aligned_cols=180  Identities=19%  Similarity=0.292  Sum_probs=162.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++.|||.+..+++..||.|.|||+.                           ....++.+.+|++.+.||..++ ++..|
T Consensus       515 La~spDakvcFsccsdGnI~vwDLh---------------------------nq~~VrqfqGhtDGascIdis~-dGtkl  566 (705)
T KOG0639|consen  515 LAISPDAKVCFSCCSDGNIAVWDLH---------------------------NQTLVRQFQGHTDGASCIDISK-DGTKL  566 (705)
T ss_pred             hhcCCccceeeeeccCCcEEEEEcc---------------------------cceeeecccCCCCCceeEEecC-CCcee
Confidence            5789999999999999999999999                           5778899999999999998854 78889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      .||+-|++|+.||++++..+........|.++.++|++.++++|-.++.+.+....           ......+..|...
T Consensus       567 WTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-----------kp~kyqlhlheSc  635 (705)
T KOG0639|consen  567 WTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-----------KPEKYQLHLHESC  635 (705)
T ss_pred             ecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-----------CccceeecccccE
Confidence            99999999999999999988888888999999999999999999999999887665           2333466789999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      |.++.|.+.|  +++.+.|..+..|.+.-|..+.... ..++|.++..+.|.+++++|+++.
T Consensus       636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             EEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence            9999999999  9999999999999999999888877 578999999999999999999873

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=150.24  Aligned_cols=162  Identities=22%  Similarity=0.324  Sum_probs=135.1

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      .--.++|.+++.++ .|.+++.|+..|.|.+|.+.+|.++..+ .|-..|+|+.|+-||.+|++|+.||.|.+|.+...-
T Consensus        78 ~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   78 IVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             cccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            33467889998755 7888888889999999999999988875 588999999999999999999999999999986533


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                      ..... ....+...+..|.-+|+++...+.+    ++|+|.|.++++||+..+.++.++. ...++.+++.+|-++.+++
T Consensus       157 ~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  157 SADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI  234 (476)
T ss_pred             ccccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence            22211 1456778999999999999998775    9999999999999999998888876 4677888888888888888


Q ss_pred             eecCcccccc
Q 045370          216 VSNCQRKLKK  225 (350)
Q Consensus       216 ~~~~~~~~~~  225 (350)
                      |+.++.++-.
T Consensus       235 Gt~~G~I~~~  244 (476)
T KOG0646|consen  235 GTEEGKIFQN  244 (476)
T ss_pred             cCCcceEEee
Confidence            8887766544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=141.68  Aligned_cols=191  Identities=17%  Similarity=0.205  Sum_probs=143.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.||+.|.+||+|+.||.|.|||+.                           +....+.+.+|..+|.+++|++ ++..|
T Consensus        29 ~~Fs~~G~~lAvGc~nG~vvI~D~~---------------------------T~~iar~lsaH~~pi~sl~WS~-dgr~L   80 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCANGRVVIYDFD---------------------------TFRIARMLSAHVRPITSLCWSR-DGRKL   80 (405)
T ss_pred             EEeccCcceeeeeccCCcEEEEEcc---------------------------ccchhhhhhccccceeEEEecC-CCCEe
Confidence            3699999999999999999999999                           4667778899999999999966 78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcE-EEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL-LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +|++.|..|.+||+..|.+++.+....+|..+.|+|.... +++.-.+..-.+.++..+....-........      ..
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl------n~  154 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL------NS  154 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc------cc
Confidence            9999999999999999999999999999999999995543 3333233334444444211100000000000      01


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeEEeeecCccccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ...+..|.+.|  +++|...|.+.++|..+.+++..+.... ..|.++-|+..|++|+..+.| ++++..
T Consensus       155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD-RvIR~y  223 (405)
T KOG1273|consen  155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD-RVIRTY  223 (405)
T ss_pred             ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC-ceEEEE
Confidence            11223566666  9999999999999999999999987655 789999999999999965554 444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.2e-19  Score=157.56  Aligned_cols=217  Identities=12%  Similarity=0.124  Sum_probs=156.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc------cccEEEeeccc--------cccceeeeccccCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL------DQRLIEMELRS--------LRSLLHYSLEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~~~h~~~   66 (350)
                      |+|.|+|++|++++.||.|++|+..............+...      ...+......+        ....-..+...+-+
T Consensus        19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp   98 (933)
T KOG1274|consen   19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP   98 (933)
T ss_pred             EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc
Confidence            57999999999999999999999875422222222111100      11111110000        01111122334678


Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      +.+++++. +|++++.||.|-.|++-++.+...... .+|.++|.++.|+|.+++|++.+.||.|++||+..+.+.....
T Consensus        99 ~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   99 IRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             ceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            88998855 788999999999999999988766665 5699999999999999999999999999999999876654332


Q ss_pred             cccccceeeecc-CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCc
Q 045370          146 VGEDQHSVLKGH-NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       146 ~~~~~~~~~~~~-~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ....   ..... ...+..++|+|++  ++..+.|+.|.+|+..++.....+.  .+...+..++|+|+|+|||+++-++
T Consensus       178 ~v~k---~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  178 GVDK---DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             cCCc---cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence            2111   11111 4567889999996  9999999999999999999888875  3444599999999999999777664


Q ss_pred             c
Q 045370          221 R  221 (350)
Q Consensus       221 ~  221 (350)
                      .
T Consensus       255 ~  255 (933)
T KOG1274|consen  255 Q  255 (933)
T ss_pred             c
Confidence            3

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.83  E-value=8.2e-20  Score=149.38  Aligned_cols=178  Identities=18%  Similarity=0.204  Sum_probs=140.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      .....+++|+.|.+|++||+..                           ..+.... -....+..|+..   ...+++|-
T Consensus       271 ~~~~~vVsgs~DRtiK~WDl~k---------------------------~~C~kt~-l~~S~cnDI~~~---~~~~~SgH  319 (459)
T KOG0288|consen  271 LSHSRVVSGSADRTIKLWDLQK---------------------------AYCSKTV-LPGSQCNDIVCS---ISDVISGH  319 (459)
T ss_pred             ccccceeeccccchhhhhhhhh---------------------------hheeccc-cccccccceEec---ceeeeecc
Confidence            3344589999999999999983                           2222222 223445555542   35589999


Q ss_pred             CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370           85 LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      .|+.|++||+++..+....+..+.|+++..++++..+.+++.|..+.+.|+++......+....    ...+  ...+.+
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g----~k~a--sDwtrv  393 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG----FKCA--SDWTRV  393 (459)
T ss_pred             cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc----cccc--ccccee
Confidence            9999999999999999999988999999999999999999999999999999766554332221    1112  238889


Q ss_pred             EecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecC
Q 045370          165 AFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       165 ~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .|||++  +++|+.||.|+||++.++++...+.....  .|++++|+|.|..|++++.+
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence            999999  99999999999999999999888864333  59999999999999977765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=4.4e-19  Score=141.25  Aligned_cols=194  Identities=14%  Similarity=0.178  Sum_probs=149.9

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ..+||.||.-|.|+|.|+.                           .......+.+|...|+.+.+.|.+.++++++|.|
T Consensus       105 ~p~la~~G~~GvIrVid~~---------------------------~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVV---------------------------SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             CeeEEeecceeEEEEEecc---------------------------hhhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence            3488999999999999998                           5778888999999999999999888999999999


Q ss_pred             CcEEEEeCCCCceEEEEe----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc----------------
Q 045370           87 ATCKVWDLGSGILIQTQV----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV----------------  146 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------  146 (350)
                      .+|++|++++..++..++    |.+.|.++.|+++|.+|++++.|-.+++|++...........                
T Consensus       158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP  237 (385)
T ss_pred             ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence            999999999999999864    899999999999999999999999999999984321100000                


Q ss_pred             ----------------------------------------------------c----cccceeeeccCCceEEEEec--C
Q 045370          147 ----------------------------------------------------G----EDQHSVLKGHNGSITALAFS--A  168 (350)
Q Consensus       147 ----------------------------------------------------~----~~~~~~~~~~~~~i~~~~~~--~  168 (350)
                                                                          .    ......+.-....|.-+.|.  |
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~  317 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP  317 (385)
T ss_pred             ccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence                                                                0    00000111122334444443  3


Q ss_pred             Ce--EEEEeCCCcEEEEECCCceEE--EEec--cCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370          169 SH--LISASEDKTVCLWDVTRRVSI--RRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       169 ~~--l~s~~~dg~v~iwd~~~~~~~--~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      -+  ||.|...|.|++||++...+.  .++.  .....|...+|+.|+.+|+..+.++.+|++..
T Consensus       318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            33  899999999999999986552  2222  22457999999999999999999998887653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=2.2e-19  Score=141.35  Aligned_cols=195  Identities=17%  Similarity=0.230  Sum_probs=138.8

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC-CceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS-GILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      ....+.|.+++|+|....+++.+|+|++|++|++.. |.....  ..|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            456789999999886667788999999999999987 444333  56899999999999999999999999999999986


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      +           +...+..|.++|.++.|-+..    |++||.|.+|+.||++...++.++.- ...+.++..-  ..++
T Consensus       104 ~-----------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~  169 (347)
T KOG0647|consen  104 G-----------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMA  169 (347)
T ss_pred             C-----------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--Ccee
Confidence            4           333777899999999998765    89999999999999999999988873 3445554432  3344


Q ss_pred             EeeecCccccccccCCccccCCCCccccccceEEeeccccCCCCcc--cccccccchhh
Q 045370          214 SEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQC--SINIRRTKSLF  270 (350)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  270 (350)
                      +++..+. -+.+..+.+..............++.+..++...++..  ++.+.....+.
T Consensus       170 vVata~r-~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  170 VVATAER-HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             EEEecCC-cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            4333332 22222222222222233333566667777766666654  44444444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=9.8e-20  Score=156.88  Aligned_cols=270  Identities=15%  Similarity=0.148  Sum_probs=182.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEEEE
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      -++..++||||-|+.|.+||++.+.......             .    .......+. ++..+|.+++.++ .+..+++
T Consensus       127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-------------~----n~~t~~sl~sG~k~siYSLA~N~-t~t~ivs  188 (735)
T KOG0308|consen  127 AKNNELVASGGLDRKIFLWDINTGTATLVAS-------------F----NNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVS  188 (735)
T ss_pred             ccCceeEEecCCCccEEEEEccCcchhhhhh-------------c----cccccccCCCCCccceeeeecCC-cceEEEe
Confidence            4577899999999999999999532200000             0    011112222 8899999999865 6688999


Q ss_pred             EeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370           83 SSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI  161 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (350)
                      |+..+.+++||.++++.+.. .+|...|.++..+++|+.+++++.||+|++||+.          .+.++.++..|...|
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----------qQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----------QQRCLATYIVHKEGV  258 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc----------ccceeeeEEeccCce
Confidence            99999999999999876655 5699999999999999999999999999999999          455666788999999


Q ss_pred             EEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC--CeEEeeecCccccccccCCccccCCCC
Q 045370          162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQRKLKKDRMPSLEKYPQL  237 (350)
Q Consensus       162 ~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~  237 (350)
                      .++..+|+.  +++|+.||.|+.=|+++......+.....+|..+..+...  -++.+..++.+.|...   +.......
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~---~~~~l~~s  335 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE---PDIALSVS  335 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc---cccccccC
Confidence            999999988  9999999999999999854433333356788888887433  3555555555555443   21111111


Q ss_pred             ccccccceEEeeccccCCCCcccccccccchhhHhhhhhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045370          238 NSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRL  317 (350)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (350)
                      .  +.+.     .+.......+.....|+         ..-+|.....+.++          +...+|+.+-+...+..+
T Consensus       336 ~--~~~~-----~~T~~~~~~~~~~~tp~---------~vi~Gg~ai~k~~m----------L~dkRhVlTkDa~gnv~l  389 (735)
T KOG0308|consen  336 G--DLDF-----FSTDSNNHSCDLTNTPD---------SVIPGGAAIKKHAM----------LNDKRHVLTKDAKGNVAL  389 (735)
T ss_pred             C--CCCc-----ccccCCCccccccCCCc---------eeccCchhhhhhhh----------hcCcceEeeecCCCCEEE
Confidence            1  0000     00110111111111121         22334433333222          223378888888999999


Q ss_pred             HHhhhceeeeecc
Q 045370          318 LDLMQCRILWYKE  330 (350)
Q Consensus       318 ~d~~~~~~~~~~~  330 (350)
                      ||+..|+++..-.
T Consensus       390 wDIl~~~~~~d~g  402 (735)
T KOG0308|consen  390 WDILACVKVEDFG  402 (735)
T ss_pred             EEeeeeeehhhcc
Confidence            9999999988544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=6.6e-19  Score=143.44  Aligned_cols=197  Identities=17%  Similarity=0.253  Sum_probs=152.2

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+| +...+||||.|.+|.||.+.......                    ....++..+.+|...|--++|+|.-.+.
T Consensus        87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------------~ltepvv~L~gH~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------------DLTEPVVELYGHQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             cccCccCCceeecCCCCceEEEEECCCccccc--------------------CcccceEEEeecceeEEEEeecccchhh
Confidence            46888 45789999999999999987321111                    1245678889999999999999988899


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      |++++.|.+|.+|++.+|..+..+.|++-|.+++|+.+|.+|++++.|..|++||.+.+...          ..-.+|.+
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v----------~e~~~heG  216 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV----------SEGVAHEG  216 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEe----------eecccccC
Confidence            99999999999999999999999999999999999999999999999999999999965433          23345543


Q ss_pred             -ceEEEEecCCe-EEEEe----CCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          160 -SITALAFSASH-LISAS----EDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 -~i~~~~~~~~~-l~s~~----~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                       .-..+.|-.++ +++.+    .+..+-+||..+.+   ...++. ..+.|.---|.|+..+++.++..+..++...+
T Consensus       217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence             23445566666 66655    36789999977643   344454 34456656688999988888877666665543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=6.2e-19  Score=146.16  Aligned_cols=188  Identities=20%  Similarity=0.196  Sum_probs=146.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|-.....|++++.|++|++|+++                           ....+.++.+|.+.|.+|.... ....+.
T Consensus       251 ~fr~gt~~lys~s~Drsvkvw~~~---------------------------~~s~vetlyGHqd~v~~IdaL~-reR~vt  302 (479)
T KOG0299|consen  251 AFRKGTSELYSASADRSVKVWSID---------------------------QLSYVETLYGHQDGVLGIDALS-RERCVT  302 (479)
T ss_pred             eeecCccceeeeecCCceEEEehh---------------------------HhHHHHHHhCCccceeeechhc-ccceEE
Confidence            555566789999999999999999                           5777888999999999998865 345555


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee--eccCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL--KGHNG  159 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~  159 (350)
                      .|+.|+++++|++.....+...++.+.+.|++|- +..+|++|+.+|.|.+|++...+...............  -.+..
T Consensus       303 VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~  381 (479)
T KOG0299|consen  303 VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF  381 (479)
T ss_pred             eccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence            6679999999999777766667788899999996 56789999999999999998655433221111111111  12335


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCc----eEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRR----VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +|++++..|..  +++|+.+|.|++|-+..+    .++..+. -.+.|++++|+++|+.+++|.+.
T Consensus       382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence            89999999877  999999999999998776    4566666 57899999999999977766554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=6.4e-19  Score=139.16  Aligned_cols=198  Identities=20%  Similarity=0.217  Sum_probs=160.6

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      ...+.|.++.|.+ .+..|+.+++||++++||+........+.|..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus        11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence            3468899999985 55667777899999999999998888899999999999986 678999999999999999865432


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                                 .+..|..+|.|+.+++..  +++|+.|++|++||.+.......+.. ...|.++..  .+..|++|+.+
T Consensus        89 -----------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~  154 (323)
T KOG1036|consen   89 -----------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSD  154 (323)
T ss_pred             -----------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecC
Confidence                       566799999999999654  99999999999999998666666653 346766655  46666655544


Q ss_pred             ccccccccCCccccCCCCccccccceEEeeccccCCCCcc--cccccccchhhHhhhhh
Q 045370          220 QRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQC--SINIRRTKSLFQHMSEL  276 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~  276 (350)
                       +.+.+++++.+..+.+....+.+.++.+..++++..|++  ++.++...++++..++.
T Consensus       155 -r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~  212 (323)
T KOG1036|consen  155 -RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA  212 (323)
T ss_pred             -ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence             444567788888888888888999999999988888887  88899998888766443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1.1e-19  Score=158.29  Aligned_cols=189  Identities=20%  Similarity=0.234  Sum_probs=155.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--Cc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--TT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~   78 (350)
                      |+.||||++||+|..-|+++||++.                           ......+..+|...|.|+.|+.+.  ..
T Consensus       465 ~~vSp~gqhLAsGDr~GnlrVy~Lq---------------------------~l~~~~~~eAHesEilcLeyS~p~~~~k  517 (1080)
T KOG1408|consen  465 LAVSPDGQHLASGDRGGNLRVYDLQ---------------------------ELEYTCFMEAHESEILCLEYSFPVLTNK  517 (1080)
T ss_pred             EEECCCcceecccCccCceEEEEeh---------------------------hhhhhhheecccceeEEEeecCchhhhH
Confidence            5789999999999999999999998                           456667788999999999997654  37


Q ss_pred             EEEEEeCCCcEEEEeCCCCce-EEEE-ec-------------------------------------------------CC
Q 045370           79 FFVSSSLDATCKVWDLGSGIL-IQTQ-VY-------------------------------------------------PQ  107 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~-~~~~-~~-------------------------------------------------~~  107 (350)
                      +|++++.|..|+|+|+...-. +.++ .|                                                 ..
T Consensus       518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt  597 (1080)
T KOG1408|consen  518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT  597 (1080)
T ss_pred             hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence            899999999999999853210 0000 01                                                 13


Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      .+..+++.|..+++++++.|..|+|||+.+++....+.       --.+|.+....+...|.|  +++.+.|.++.++|.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-------gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-------GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-------ccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            57788889999999999999999999999665433211       223577888899999999  999999999999999


Q ss_pred             CCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          186 TRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       186 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .+++++.++.+|...|+.+.|.+|-+.|++.++|+-++
T Consensus       671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF  708 (1080)
T KOG1408|consen  671 VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF  708 (1080)
T ss_pred             ccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence            99999999999999999999999999999888886544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.3e-18  Score=136.56  Aligned_cols=183  Identities=14%  Similarity=0.131  Sum_probs=141.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+.+|-+..+++++.|++|++||++                           ...+...+.....+  .++|. |.|-++
T Consensus       106 L~~sP~~d~FlS~S~D~tvrLWDlR---------------------------~~~cqg~l~~~~~p--i~AfD-p~GLif  155 (311)
T KOG1446|consen  106 LSVSPKDDTFLSSSLDKTVRLWDLR---------------------------VKKCQGLLNLSGRP--IAAFD-PEGLIF  155 (311)
T ss_pred             EEecCCCCeEEecccCCeEEeeEec---------------------------CCCCceEEecCCCc--ceeEC-CCCcEE
Confidence            4678988999999999999999998                           33443333322233  34554 478888


Q ss_pred             EEEeCCCcEEEEeCCCC--ceEEEEe----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           81 VSSSLDATCKVWDLGSG--ILIQTQV----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      |++.....|++||++.-  .+...+.    .....+.+.|+|+|++++.++..+.+++.|.-.+....          .+
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~----------tf  225 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS----------TF  225 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee----------eE
Confidence            99888889999999863  3444433    34578899999999999999999999999988654332          44


Q ss_pred             eccCCc---eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc-CCCceeEEEEEccCCeEEeeecCcccc
Q 045370          155 KGHNGS---ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       155 ~~~~~~---i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .++...   -....|+|++  +++|+.||+|++|+++++..+..+.+ +.+++.++.|+|.-..+++++.....|
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw  300 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW  300 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence            444322   2567899999  88899999999999999999999987 688999999999999998777665555

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.81  E-value=6.6e-19  Score=152.87  Aligned_cols=166  Identities=23%  Similarity=0.338  Sum_probs=137.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      ++. |+|||.|.++++|-..                             .+...+.+|+..|++++..|.+  .++||+.
T Consensus       112 ~~~-~iSgSWD~TakvW~~~-----------------------------~l~~~l~gH~asVWAv~~l~e~--~~vTgsa  159 (745)
T KOG0301|consen  112 DGT-LISGSWDSTAKVWRIG-----------------------------ELVYSLQGHTASVWAVASLPEN--TYVTGSA  159 (745)
T ss_pred             cCc-eEecccccceEEecch-----------------------------hhhcccCCcchheeeeeecCCC--cEEeccC
Confidence            444 8999999999999764                             4445589999999999998854  6899999


Q ss_pred             CCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370           86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      |.+|++|.-  ++.+.++ .|.+.|+.+++-++ ..|++++.||.|+.|++.           .+.+....+|+..|+++
T Consensus       160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-----------ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-----------GEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             cceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-----------CceeeeeeccceEEEEE
Confidence            999999986  5566664 59999999999864 467889999999999985           45566888999999999


Q ss_pred             Ee-cCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          165 AF-SASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       165 ~~-~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .. .+++ ++++++|++++||+..  .+...+......++++.+-++|.+++ |++|+
T Consensus       226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv-g~SDG  280 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV-GGSDG  280 (745)
T ss_pred             EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE-eccCc
Confidence            94 4555 9999999999999987  77777775566899999999999888 55554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.9e-20  Score=168.88  Aligned_cols=193  Identities=20%  Similarity=0.292  Sum_probs=149.1

Q ss_pred             CeecCCCCE----EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            1 MVFSDDGFL----LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      ++|.+.|..    ||.|..||.|.+||.....                     .......+.....|++.|.++.|++..
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~---------------------~~~~~~~la~~~~h~G~V~gLDfN~~q  128 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASII---------------------ANASEEVLATKSKHTGPVLGLDFNPFQ  128 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhhc---------------------cCcchHHHhhhcccCCceeeeeccccC
Confidence            467776654    8999999999999988310                     011244566778999999999999988


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++++++|+.||.|.|||+.+-+.-...   ...+.|.+++|+.. .+.|++++.+|.+.|||++..          +++.
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------~pii  198 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------KPII  198 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC----------Cccc
Confidence            889999999999999999975443333   35678999999874 567888999999999999943          3333


Q ss_pred             eeeccC--CceEEEEecCCe---EEEEeCCC---cEEEEECCC-ceEEEEeccCCCceeEEEEEccC-CeEEeeecCccc
Q 045370          153 VLKGHN--GSITALAFSASH---LISASEDK---TVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNCQRK  222 (350)
Q Consensus       153 ~~~~~~--~~i~~~~~~~~~---l~s~~~dg---~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~~~~  222 (350)
                      .+..+.  ..+..++|+|+.   +++++.|.   .|.+||+|. ..+++.+.+|...|.++.|++.+ .+|++++.|+++
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            444443  357889999998   77777654   699999986 55778888999999999999987 677766666655


Q ss_pred             cc
Q 045370          223 LK  224 (350)
Q Consensus       223 ~~  224 (350)
                      +.
T Consensus       279 i~  280 (1049)
T KOG0307|consen  279 IC  280 (1049)
T ss_pred             eE
Confidence            43

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=4.3e-19  Score=148.56  Aligned_cols=181  Identities=17%  Similarity=0.252  Sum_probs=153.4

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ..|+++|+..+.|+|||+.                           ...+.+.+.+|...|+++.|+. ...+|++++..
T Consensus        91 S~y~~sgG~~~~Vkiwdl~---------------------------~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~g  142 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLR---------------------------AKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDG  142 (673)
T ss_pred             ceeeeccCcCceeeehhhH---------------------------HHHHhhhccCCcceeEEEEecC-CcceeEEeccC
Confidence            4689999999999999998                           5677788999999999999966 45789999999


Q ss_pred             CcEEEEeCCCCceEEEEecC--CceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           87 ATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      |-|.|..+.++.....+.++  ..|+-+.|+|..+ +|.+++.+|.|.+||+....         ....-...|..+...
T Consensus       143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~g  213 (673)
T KOG4378|consen  143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRG  213 (673)
T ss_pred             CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCc
Confidence            99999999999877777765  4577999999776 45678889999999998432         222244579999999


Q ss_pred             EEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          164 LAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       164 ~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ++|+|..   |++.+.|..|.+||.+..+....+. ...|.+.++|+++|.+|++|...++++..
T Consensus       214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~Y  277 (673)
T KOG4378|consen  214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAY  277 (673)
T ss_pred             ceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEE
Confidence            9999988   9999999999999999888887776 46799999999999999988888877654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=6.9e-19  Score=139.65  Aligned_cols=195  Identities=19%  Similarity=0.256  Sum_probs=161.3

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      ..+.+++.|.+.+||.++                           .+.++..+.+|.+.|+++.|++ .+.++++++.|+
T Consensus       161 pi~gtASADhTA~iWs~E---------------------------sg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~  212 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLE---------------------------SGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDE  212 (481)
T ss_pred             cceeecccccceeEEeec---------------------------cccceeeecccccceeeEEecc-ccceEEEccCCc
Confidence            477889999999999999                           6899999999999999999966 678999999999


Q ss_pred             cEEEEeCC------C------------------------------Cc----eEEE-EecCCceeEEEEcCCCcEEEEEcc
Q 045370           88 TCKVWDLG------S------------------------------GI----LIQT-QVYPQAVTAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        88 ~v~vwd~~------~------------------------------~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  126 (350)
                      +-.||...      .                              +.    ++.. ..|...|.+..|-..|..+++++.
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW  292 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW  292 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence            99999721      0                              00    1111 236778888899999999999999


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeE
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTN  203 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~  203 (350)
                      |.+..+||+++          .+.+..+.+|....+.+.-+|..  +++++.|.+.++||++. -..+..|.+|...|++
T Consensus       293 DRTAnlwDVEt----------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  293 DRTANLWDVET----------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             cccceeeeecc----------CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            99999999995          44555889999999999999988  88889999999999985 3457778999999999


Q ss_pred             EEEEccCCeEEeeecCccccccccCCccccCCCCccccc
Q 045370          204 LVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSM  242 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (350)
                      +.|..+.+.+  .++|++.+++|++.++..++.....+.
T Consensus       363 ~vF~~dd~vV--SgSDDrTvKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  363 VVFNTDDRVV--SGSDDRTVKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             EEEecCCcee--ecCCCceEEEeeeccccCcceeeecCC
Confidence            9999887655  566788889998888887776655443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=9.5e-19  Score=139.11  Aligned_cols=193  Identities=18%  Similarity=0.239  Sum_probs=148.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||.+|+.| ..+.|+|||+.++.+.+.....                   ....-.+..+-+.+++|+|.+...+
T Consensus       164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t-------------------~~~~k~gq~giisc~a~sP~~~~~~  223 (406)
T KOG2919|consen  164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT-------------------VTKGKFGQKGIISCFAFSPMDSKTL  223 (406)
T ss_pred             EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhh-------------------hhcccccccceeeeeeccCCCCcce
Confidence            5899999999876 5689999999754433322111                   1111234467788999999888899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +.|+...++-|+.-..+.++..+ .|.+.|+.++|+++|+.|++|+. |-.|..||++.         ...++..+..|.
T Consensus       224 a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~---------~~~pv~~L~rhv  294 (406)
T KOG2919|consen  224 AVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY---------SRDPVYALERHV  294 (406)
T ss_pred             eeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh---------ccchhhhhhhhc
Confidence            99999999999998888888774 69999999999999999999985 68999999995         344444555565


Q ss_pred             C-ceEEEE--ecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          159 G-SITALA--FSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       159 ~-~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      . .-..|.  ..|.+  |++|+.||.|++||+.. +..+..+..+...+..++++|--.+++++++ .+++
T Consensus       295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG-qr~f  364 (406)
T KOG2919|consen  295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG-QRIF  364 (406)
T ss_pred             cCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC-ceee
Confidence            4 333344  45666  99999999999999998 7767778888899999999999888885554 3444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=148.12  Aligned_cols=196  Identities=15%  Similarity=0.157  Sum_probs=159.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|++ |..|++.+.+|.|.-||+.                           ............+.|++++.++ .+..+
T Consensus        75 L~W~e-~~RLFS~g~sg~i~EwDl~---------------------------~lk~~~~~d~~gg~IWsiai~p-~~~~l  125 (691)
T KOG2048|consen   75 LAWAE-GGRLFSSGLSGSITEWDLH---------------------------TLKQKYNIDSNGGAIWSIAINP-ENTIL  125 (691)
T ss_pred             EEEcc-CCeEEeecCCceEEEEecc---------------------------cCceeEEecCCCcceeEEEeCC-ccceE
Confidence            57884 5577888899999999999                           5677777788899999999976 55789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +.|+.||.+..++...+......   ...+.+.++.|+|++..+++|+.||.|++||...+.......+.  ..+.-+..
T Consensus       126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~--~d~l~k~~  203 (691)
T KOG2048|consen  126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ--LDRLSKRE  203 (691)
T ss_pred             EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec--ccccccCC
Confidence            99999998888888888776652   35688999999999999999999999999999976543311110  11111123


Q ss_pred             CCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370          158 NGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       158 ~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      ..-|.++.+-.++ +++|..-|+|.+||...+..+..+..|.+.|.+++..+++..+++++-|.+++....
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            4457778777777 999999999999999999999999999999999999999999999999988776653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=4.3e-18  Score=134.92  Aligned_cols=182  Identities=21%  Similarity=0.256  Sum_probs=139.2

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT   88 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   88 (350)
                      .|+.|++...|.=+++.........               .......+...+..|.++|++++.   ++.++++||.|-+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~---------------s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDet   64 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTD---------------SVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDET   64 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCcccccc---------------ccceeeeccccccccccceeEEEe---cceeEeccCCCCc
Confidence            4678888888888877621100000               000012334566889999999998   5678999999999


Q ss_pred             EEEEeCCCCceEEE-EecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           89 CKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        89 v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      |+|||+.....+.. +.|.+.|+++.|.+.-.  +|++|+.||.|.+|+...+.          .+..+++|.+.|+.++
T Consensus        65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~----------~~~slK~H~~~Vt~ls  134 (362)
T KOG0294|consen   65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE----------LLKSLKAHKGQVTDLS  134 (362)
T ss_pred             EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE----------EeeeecccccccceeE
Confidence            99999998877766 56899999999998665  99999999999999999653          3448889999999999


Q ss_pred             ecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          166 FSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       166 ~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+|.+  .++.+.|+.+++||+-+|+.-..+.- ....+.+.|+|.|.+++.++.+
T Consensus       135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             ecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence            99999  56778899999999998887666552 2223448899999866655544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.8e-18  Score=142.13  Aligned_cols=185  Identities=21%  Similarity=0.312  Sum_probs=144.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|++||..|++|+.||++|||++.                           ....+.....|...|.++.|++ ++.+|
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~P---------------------------s~~t~l~e~~~~~eV~DL~FS~-dgk~l  201 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWP---------------------------SMLTILEEIAHHAEVKDLDFSP-DGKFL  201 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecC---------------------------cchhhhhhHhhcCccccceeCC-CCcEE
Confidence            5899999999999999999999987                           3556667789999999999965 88899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCC---cE--EEEEccCCeEEEEeCCccccccccccccccce
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGE---QL--LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++-+.| ..+||+.+++..+....   .+.....+.|..++   .+  ++....-+.|..||+..+.-.. ..    +.+
T Consensus       202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~-~l----~~~  275 (398)
T KOG0771|consen  202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN-FL----RLR  275 (398)
T ss_pred             EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc-cc----chh
Confidence            999999 89999999997766643   33346778888776   33  3333345778888877543321 00    111


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ........|++++.+++|  ++.|+.||.|-|++..+.+.++-++ .|...|+.+.|+|+.+++++.+.+
T Consensus       276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence            222234589999999999  9999999999999999988887765 789999999999999999876655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.5e-17  Score=132.34  Aligned_cols=214  Identities=22%  Similarity=0.235  Sum_probs=154.5

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee------C
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS------G   75 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~   75 (350)
                      .|||||..|++-+.|..+.+|++....-....        ++.+      ...............|...+|.+      |
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~--------~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--------DGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccCC--------CCcc------ccccceeEEeccCCEEEEEEeeeccccCCC
Confidence            69999999999999999999998731111110        0000      00111112223345666767763      4


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCC---ceeEEEEcCCCcEEEEEccCCeEEEEeC-Ccccccccccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPL-KFLLLEDHFIVGE  148 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~  148 (350)
                      +..++++.+.+..|++||.-+|+...++.   |.+   ...+++|+|||..|++|. ...|++||+ +.+......... 
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~-  199 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV-  199 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh-
Confidence            66889999999999999999999887753   333   467899999999999886 689999999 433211110000 


Q ss_pred             ccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          149 DQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                        ..--.+..+.|.|++|+|..   ++.|+....+-||.-..+.++..+.+|.+.|+.++|.++|..|++|+...-.+..
T Consensus       200 --~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  200 --TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC  277 (406)
T ss_pred             --hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence              00122346789999999976   9999999999999988999999999999999999999999999999887666666


Q ss_pred             ccCCcccc
Q 045370          226 DRMPSLEK  233 (350)
Q Consensus       226 ~~~~~~~~  233 (350)
                      |+++....
T Consensus       278 WDiR~~~~  285 (406)
T KOG2919|consen  278 WDIRYSRD  285 (406)
T ss_pred             Eeehhccc
Confidence            76555443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.2e-19  Score=162.25  Aligned_cols=186  Identities=20%  Similarity=0.301  Sum_probs=150.6

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~   78 (350)
                      +.|++... +||+|+.||.|.|||+.+..                          ..... .....+.|.+++|+....+
T Consensus       122 LDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------------tP~~~~~~~~~~eI~~lsWNrkvqh  175 (1049)
T KOG0307|consen  122 LDFNPFQGNLLASGADDGEILIWDLNKPE--------------------------TPFTPGSQAPPSEIKCLSWNRKVSH  175 (1049)
T ss_pred             eeccccCCceeeccCCCCcEEEeccCCcC--------------------------CCCCCCCCCCcccceEeccchhhhH
Confidence            57888765 99999999999999998421                          11111 2345688999999887788


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecC---CceeEEEEcCCCc-EEEEEccC---CeEEEEeCCccccccccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQ-LLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      .|++++.+|.+.|||++..+.+..+...   ..+..+.|||+.. .+++++.|   -.|.+||+|.         ...+.
T Consensus       176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---------assP~  246 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---------ASSPL  246 (1049)
T ss_pred             HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc---------cCCch
Confidence            9999999999999999988776665433   3488999999764 66666655   4899999995         45566


Q ss_pred             eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCcc
Q 045370          152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQR  221 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~~  221 (350)
                      +.+++|...|.++.|++..   +++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+++
T Consensus       247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            6889999999999999876   99999999999999999999999998788999999999887 5555555543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=2.3e-18  Score=142.71  Aligned_cols=192  Identities=19%  Similarity=0.239  Sum_probs=149.4

Q ss_pred             CeecCCC--CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDG--FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|..  +++|+|..-|.|-+||+.+.                       .....-+..+..|..+|.++.|+|.+..
T Consensus       192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~-----------------------~~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQ-----------------------EKDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             EEecccCcceEEEEccCCCcEEEEecCCC-----------------------CCccCceEEeccCCccccceEecCCChh
Confidence            5788865  48899999999999999510                       0123345667889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      .+++.+.||+|++-|++.+.....+.   ....+.++.|+.+...++.+..=|...+||+++..         .....+.
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~---------s~~~~~~  319 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG---------SEYENLR  319 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC---------ccchhhh
Confidence            99999999999999999765433332   23457778888888888888777899999999643         3333566


Q ss_pred             ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE-----EEEeccCCCceeEEEEEccCCeEEeeecCc--ccccc
Q 045370          156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRRVS-----IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKK  225 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~  225 (350)
                      -|...|+.++++|-.   |+|++.|++++|||++....     +..+ .|..+|.+..|||.+--|++.+.|.  ++|..
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            788899999999987   99999999999999986322     3333 5899999999999987788777763  44444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.7e-18  Score=150.05  Aligned_cols=178  Identities=21%  Similarity=0.280  Sum_probs=145.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+.+|+++|.||.|-.|++-++.                           .......+.+|.++|.++.|+| .+.+|
T Consensus       102 ~~v~g~g~~iaagsdD~~vK~~~~~---------------------------D~s~~~~lrgh~apVl~l~~~p-~~~fL  153 (933)
T KOG1274|consen  102 LAVSGSGKMIAAGSDDTAVKLLNLD---------------------------DSSQEKVLRGHDAPVLQLSYDP-KGNFL  153 (933)
T ss_pred             EEEecCCcEEEeecCceeEEEEecc---------------------------ccchheeecccCCceeeeeEcC-CCCEE
Confidence            4789999999999999999999988                           4667778899999999999977 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      |+.+.||.|++||+.++.+...+.         ....+..++|+|++..+++.+.|+.|.+|+...+......       
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-------  226 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-------  226 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-------
Confidence            999999999999999988766643         1345788999999999999999999999999876544322       


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                       ....+...+.++.|+|+|  ||+++.||.|.|||..+-..    ......|.+++|.|+..-+.....
T Consensus       227 -r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  227 -RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             -cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence             122344559999999999  99999999999999998221    223568999999999876654433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=8.9e-17  Score=136.93  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=125.9

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|+.+ ++++.++.|++||..+                           ......+..+.. +..++|++.+..+
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~-~~~~~~~~~g~~l   87 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLAT---------------------------GEVIGTLPSGPD-PELFALHPNGKIL   87 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCC---------------------------CcEEEeccCCCC-ccEEEECCCCCEE
Confidence            4799999876 5677899999999882                           333333333333 4567776644444


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-eEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++++.|+.|++||+.+++.+..+.....+.+++|+|++.++++++.++ .+.+||..+.....          .. ...
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----------~~-~~~  156 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----------NV-LVD  156 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----------EE-EcC
Confidence            4566678999999999988877777666678999999999999988765 56778887543221          11 122


Q ss_pred             CceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCC-----C--ceeEEEEEccCCeEEeeec
Q 045370          159 GSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKK-----G--VVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       159 ~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~--~v~~l~~~~~~~~l~~~~~  218 (350)
                      ..+.++.|+|++  + +++..++.|++||+.+++.+..+..+.     .  ....++|+|++++++++..
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence            345778999998  5 444569999999999998877664221     1  2356889999998665543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=7e-18  Score=138.27  Aligned_cols=147  Identities=18%  Similarity=0.385  Sum_probs=102.5

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l   80 (350)
                      +|.|||..+++|+.|++|..||++                            +.......+-. ..|.+++..+ ++.++
T Consensus       319 ~W~pDg~~~V~Gs~dr~i~~wdlD----------------------------gn~~~~W~gvr~~~v~dlait~-Dgk~v  369 (519)
T KOG0293|consen  319 AWCPDGFRFVTGSPDRTIIMWDLD----------------------------GNILGNWEGVRDPKVHDLAITY-DGKYV  369 (519)
T ss_pred             EEccCCceeEecCCCCcEEEecCC----------------------------cchhhcccccccceeEEEEEcC-CCcEE
Confidence            789999999999999999999998                            22233332222 4466666543 55666


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC--------------------------------------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP--------------------------------------------  116 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------------  116 (350)
                      ++.+.|..|++++..+......+....+|++++.+.                                            
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            666667777666655433322222233333333333                                            


Q ss_pred             -CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC
Q 045370          117 -GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR  187 (350)
Q Consensus       117 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~  187 (350)
                       +..++++|+.|+.|+||+..          .++++..+.||...|+|++|+|..   +|+++.||+|+||....
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~----------sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRI----------SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCcceEEecCCCceEEEEEcc----------CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence             33567778888888888877          456666999999999999999987   99999999999997653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=6.6e-18  Score=137.68  Aligned_cols=170  Identities=15%  Similarity=0.171  Sum_probs=137.2

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce--------EEEEecCCceeEEEEcCC-CcEEEEEcc
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL--------IQTQVYPQAVTAIAFHPG-EQLLFAGSI  126 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~-~~~l~~~~~  126 (350)
                      ......+|+++|..+.|+|-+...+|+||.|.+|.||++..+..        +....|...|..++|||. .+.|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            34456899999999999999989999999999999999876432        223468899999999995 568889999


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeE
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTN  203 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~  203 (350)
                      |..|.+|++.++.          .+..+. |...|+++.|+.+|  |++++.|..|||||.++++.+..-.+|.+ .-..
T Consensus       153 Dn~v~iWnv~tge----------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  153 DNTVSIWNVGTGE----------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             CceEEEEeccCCc----------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence            9999999999653          233444 99999999999999  99999999999999999999998877766 3566


Q ss_pred             EEEEccCCeEEeeecC--ccccccccCCccccCCC
Q 045370          204 LVVIRQSSLLSEVSNC--QRKLKKDRMPSLEKYPQ  236 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~  236 (350)
                      +.|-.+|.++.+|.+.  .+.+-+|+-..+...+.
T Consensus       222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~  256 (472)
T KOG0303|consen  222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA  256 (472)
T ss_pred             eEEeccCceeeeccccccccceeccCcccccCcce
Confidence            7798999965555443  67777776655555433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.1e-17  Score=124.49  Aligned_cols=194  Identities=18%  Similarity=0.158  Sum_probs=139.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|+|.+++|+.|..+|.|.+..+.........                 ......+...++|.++|..++|.   ..+|+
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------~~gk~~iv~eqahdgpiy~~~f~---d~~Ll   76 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------PPGKLKIVPEQAHDGPIYYLAFH---DDFLL   76 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------CCCCcceeeccccCCCeeeeeee---hhhee
Confidence            58999999999999999999998843222111                 11234455568999999999995   35677


Q ss_pred             EEeCCCcEEEEeCCCCce------EEEE--e------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc
Q 045370           82 SSSLDATCKVWDLGSGIL------IQTQ--V------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~------~~~~--~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      +|+ ||.|+-|..+....      +...  +      .-..|+++-..|..+-++.++.|+.++.||++++.        
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------  147 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------  147 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--------
Confidence            776 59999988654221      1110  1      12368999999988888888899999999999654        


Q ss_pred             cccceeeeccCCceEEEEe-cCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCc--------eeEEEEEccCCeEEeee
Q 045370          148 EDQHSVLKGHNGSITALAF-SASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGV--------VTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~-~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~l~~~~  217 (350)
                        ..+.+++|++.|.++.- +.++ +++|++||++|+||.++++.+..+.....+        -+-.+..-+..+|++|+
T Consensus       148 --i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg  225 (325)
T KOG0649|consen  148 --IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG  225 (325)
T ss_pred             --EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence              44488999999999998 5555 999999999999999999998887532211        11134455677888766


Q ss_pred             cC-ccccccc
Q 045370          218 NC-QRKLKKD  226 (350)
Q Consensus       218 ~~-~~~~~~~  226 (350)
                      +- ..+|.+.
T Consensus       226 Gp~lslwhLr  235 (325)
T KOG0649|consen  226 GPKLSLWHLR  235 (325)
T ss_pred             CCceeEEecc
Confidence            54 3444444

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.5e-17  Score=141.48  Aligned_cols=203  Identities=17%  Similarity=0.194  Sum_probs=153.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|.|-...|++++.||++++|+++....                   .......++.++.+|.++|.|+++ +.++..+
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~  359 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHEGPVLCVVV-PSNGEHC  359 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEecccCceEEEEe-cCCceEE
Confidence            35778888999999999999999952000                   011134567788999999999998 5588999


Q ss_pred             EEEeCCCcEEEEeCCCC---------ceE--EEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc--ccccc--
Q 045370           81 VSSSLDATCKVWDLGSG---------ILI--QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL--EDHFI--  145 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~---------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~--  145 (350)
                      ++|+-||+|+.|++...         ..+  ...+|.+.++.+++++....|++++.||+++.|+......  .....  
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~  439 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH  439 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcccc
Confidence            99999999999965421         111  1256899999999999999999999999999999765443  00000  


Q ss_pred             -----c---c----------------------cccceeeec-------cCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370          146 -----V---G----------------------EDQHSVLKG-------HNGSITALAFSASH--LISASEDKTVCLWDVT  186 (350)
Q Consensus       146 -----~---~----------------------~~~~~~~~~-------~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~  186 (350)
                           +   .                      ...+..+..       -...++.+.++|..  .+++.+|+.|+++|..
T Consensus       440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence                 0   0                      000001110       11356778888887  8889999999999999


Q ss_pred             CceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          187 RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       187 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ++.++.....|...++++++.|+|.+|++++.++++.
T Consensus       520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR  556 (577)
T ss_pred             ccccchheeeccceecceeecCCCceEEeecCCceee
Confidence            9999999999999999999999999999988886543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.76  E-value=1.6e-17  Score=143.10  Aligned_cols=158  Identities=17%  Similarity=0.246  Sum_probs=110.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~   78 (350)
                      +.|-|....|++++.|.++++||+.                           ...+...  +.+|...|.+++|.+.+..
T Consensus       106 l~wapge~~lVsasGDsT~r~Wdvk---------------------------~s~l~G~~~~~GH~~SvkS~cf~~~n~~  158 (720)
T KOG0321|consen  106 LKWAPGESLLVSASGDSTIRPWDVK---------------------------TSRLVGGRLNLGHTGSVKSECFMPTNPA  158 (720)
T ss_pred             eccCCCceeEEEccCCceeeeeeec---------------------------cceeecceeecccccccchhhhccCCCc
Confidence            3567855789999999999999999                           3444444  7899999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceE-----------------------EE-----EecCCceeE---EEEcCCCcEEEEEcc-
Q 045370           79 FFVSSSLDATCKVWDLGSGILI-----------------------QT-----QVYPQAVTA---IAFHPGEQLLFAGSI-  126 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~-----------------------~~-----~~~~~~v~~---~~~~~~~~~l~~~~~-  126 (350)
                      .|++|+.||.|.|||++....-                       ..     ..+...|.+   +.+..|...|++++. 
T Consensus       159 vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~  238 (720)
T KOG0321|consen  159 VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAA  238 (720)
T ss_pred             ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCC
Confidence            9999999999999998743200                       00     012233444   555578889998887 


Q ss_pred             CCeEEEEeCCccccccccccccccceeeecc---CCceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH---NGSITALAFSASH--LISASEDKTVCLWDVTR  187 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~  187 (350)
                      |+.|++||++........  .......+..|   .-.+.++.....|  |++.+.|+.|++|++.+
T Consensus       239 D~~iKVWDLRk~~~~~r~--ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  239 DSTIKVWDLRKNYTAYRQ--EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             CcceEEEeeccccccccc--CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            999999999975433211  11111122233   3356666666655  55555688888888865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.7e-17  Score=135.82  Aligned_cols=188  Identities=16%  Similarity=0.240  Sum_probs=148.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.|+|....|++|+.||+++||.++.                         .....+..+.--..+|.+.+|.+.+...+
T Consensus       219 v~FHp~~plllvaG~d~~lrifqvDG-------------------------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i  273 (514)
T KOG2055|consen  219 VQFHPTAPLLLVAGLDGTLRIFQVDG-------------------------KVNPKLQSIHLEKFPIQKAEFAPNGHSVI  273 (514)
T ss_pred             EEecCCCceEEEecCCCcEEEEEecC-------------------------ccChhheeeeeccCccceeeecCCCceEE
Confidence            57999999999999999999999882                         13345555566678999999977555589


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---c-CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---Y-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++++....+..||+.+.+....-.   + ...+....++|++++|+..+..|.|++....++......           .
T Consensus       274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-----------K  342 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-----------K  342 (514)
T ss_pred             EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-----------e
Confidence            999999999999999887665422   2 345778889999999999999999999988866554432           2


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecCccccccc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      -.+.|..++|+.++  |++++.+|.|++||++...+++.+.. .+  .-+++|.++++.+||+|+..+ +++++
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~G-iVNIY  414 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSG-IVNIY  414 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcc-eEEEe
Confidence            34789999999988  88888899999999999999999863 23  346778889999999777664 33443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.9e-17  Score=135.68  Aligned_cols=188  Identities=18%  Similarity=0.208  Sum_probs=148.1

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ..||++++|+..|..|.|.+....                           ++..+. ...-.+.|..++|++ ++..|+
T Consensus       310 eVShd~~fia~~G~~G~I~lLhak---------------------------T~eli~-s~KieG~v~~~~fsS-dsk~l~  360 (514)
T KOG2055|consen  310 EVSHDSNFIAIAGNNGHIHLLHAK---------------------------TKELIT-SFKIEGVVSDFTFSS-DSKELL  360 (514)
T ss_pred             EecCCCCeEEEcccCceEEeehhh---------------------------hhhhhh-eeeeccEEeeEEEec-CCcEEE
Confidence            468999999999999999998876                           233333 334578899999986 557777


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEecCCcee--EEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVYPQAVT--AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +++.+|.|.+||++...+++.+...+.|.  ++|.++++.+|++|+..|.|.|||..+.....    ..+++..+..-..
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~----~PkPik~~dNLtt  436 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST----NPKPIKTVDNLTT  436 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC----CCCchhhhhhhhe
Confidence            77889999999999999999987666654  56667899999999999999999977543322    3555566666678


Q ss_pred             ceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEecc---CCCceeEEEEEccCCeEEeeecCccc
Q 045370          160 SITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNH---KKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       160 ~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      .|++|.|+|+.    +++...+..+++-.+.+......++.   ..+.|+||+|+|.+.+|+.|...+++
T Consensus       437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            89999999998    44444678899999998887777753   34579999999999999977776543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=4.3e-17  Score=127.85  Aligned_cols=191  Identities=21%  Similarity=0.229  Sum_probs=144.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-CCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-GGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~   79 (350)
                      |.|.|++..+++-. |..|.+|+++........                     -.......|....++-+|+| .+++.
T Consensus       129 vew~Pns~klasm~-dn~i~l~~l~ess~~vae---------------------v~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE---------------------VLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             EEEcCCCCeeEEec-cCceEEEEcccCcchhee---------------------ecccccccccceecccccCCCCccce
Confidence            46899999998775 899999999842211100                     00111123666777888987 45666


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +++. .|+++..||+++......+.  |...+..+.|+|+.. +|++|+.||.|++||.+.         ...++..+.+
T Consensus       187 v~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---------tk~pv~el~~  256 (370)
T KOG1007|consen  187 VATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---------TKFPVQELPG  256 (370)
T ss_pred             EEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---------CCccccccCC
Confidence            6665 48999999999887777654  788899999999765 678889999999999995         5566778999


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCc-----------------------------eEEEEeccCCCceeEE
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRR-----------------------------VSIRRFNHKKGVVTNL  204 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l  204 (350)
                      |...|.++.|+|..   +++|+.|..|.+|...+-                             ..+.++..|...|.++
T Consensus       257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~  336 (370)
T KOG1007|consen  257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL  336 (370)
T ss_pred             CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence            99999999999976   999999999999965321                             1234566788999999


Q ss_pred             EEEccCCeE-EeeecCcccc
Q 045370          205 VVIRQSSLL-SEVSNCQRKL  223 (350)
Q Consensus       205 ~~~~~~~~l-~~~~~~~~~~  223 (350)
                      +|+.-..++ ++-+.|++++
T Consensus       337 aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  337 AWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             eeccCCCeeEEEeccCceEE
Confidence            999887755 4556666655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.75  E-value=4.6e-16  Score=130.84  Aligned_cols=205  Identities=20%  Similarity=0.261  Sum_probs=146.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccc------cccEEEe-------eccccccceeeeccccCCceEEE
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL------DQRLIEM-------ELRSLRSLLHYSLEHKSSVTGLL   71 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~~~~h~~~v~~~~   71 (350)
                      .+|. |+||+.|+.|..||-.-......+.+...+++      .+.++.-       ...-.........+|.+..+.++
T Consensus       297 r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla  375 (626)
T KOG2106|consen  297 RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA  375 (626)
T ss_pred             cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence            4565 55699999999999332222222222221111      1112111       11111223345578999999999


Q ss_pred             EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ..| ..+.++|++.|+++++|+  ..++..+.....++.|+.|+|.| .++.|+..|...+.|.++..+.          
T Consensus       376 ~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv----------  441 (626)
T KOG2106|consen  376 THP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV----------  441 (626)
T ss_pred             cCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE----------
Confidence            866 567899999999999999  66777777788999999999999 9999999999999999853221          


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEec-cCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                       .+.....++++++|+|+|  ||.|+.|+.|+||-+.. +....... .+..+|+.+.|++|+++|.+.+.|-.++.+
T Consensus       442 -~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  442 -TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             -EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence             233337899999999999  99999999999998865 33333332 344899999999999999988887555544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.75  E-value=2.1e-16  Score=132.82  Aligned_cols=179  Identities=17%  Similarity=0.211  Sum_probs=139.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|.++|. ++||..+|.|.||+..                           .........+|.+.|.+++... ++. |
T Consensus       252 v~F~engd-viTgDS~G~i~Iw~~~---------------------------~~~~~k~~~aH~ggv~~L~~lr-~Gt-l  301 (626)
T KOG2106|consen  252 VTFLENGD-VITGDSGGNILIWSKG---------------------------TNRISKQVHAHDGGVFSLCMLR-DGT-L  301 (626)
T ss_pred             EEEcCCCC-EEeecCCceEEEEeCC---------------------------CceEEeEeeecCCceEEEEEec-Ccc-E
Confidence            57888886 6799999999999987                           3445555559999999998865 554 6


Q ss_pred             EEEeCCCcEEEEeCCC-----------------------------------------CceEEEEecCCceeEEEEcCCCc
Q 045370           81 VSSSLDATCKVWDLGS-----------------------------------------GILIQTQVYPQAVTAIAFHPGEQ  119 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~  119 (350)
                      ++|+.|+.|..||-.-                                         +..+..+.|.+....++.+|+.+
T Consensus       302 lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~  381 (626)
T KOG2106|consen  302 LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN  381 (626)
T ss_pred             eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence            6799999999998320                                         01112234667788899999999


Q ss_pred             EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370          120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKK  198 (350)
Q Consensus       120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~  198 (350)
                      .+++++.|+.+++|+-.  ++.           --..-..++.|+.|+|.+ ++.|...|...+.|.++...+..-.. .
T Consensus       382 q~~T~gqdk~v~lW~~~--k~~-----------wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~  447 (626)
T KOG2106|consen  382 QLLTCGQDKHVRLWNDH--KLE-----------WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-N  447 (626)
T ss_pred             heeeccCcceEEEccCC--cee-----------EEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-C
Confidence            99999999999999922  111           111234688999999999 99999999999999999666554443 8


Q ss_pred             CceeEEEEEccCCeEEeeecCcccc
Q 045370          199 GVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       199 ~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .+++.+.|+|+|.+||.|+.|..+.
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSHDNHIY  472 (626)
T ss_pred             CceEEEEEcCCCCEEEEecCCCeEE
Confidence            8999999999999999999886544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=7.8e-17  Score=140.83  Aligned_cols=186  Identities=20%  Similarity=0.274  Sum_probs=140.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC----
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG----   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----   76 (350)
                      +.|+|....|.+.-.|..++|||++...+                        ........-|...|+++...|.+    
T Consensus       330 ~~Fdet~~klscVYndhSlYvWDvrD~~k------------------------vgk~~s~lyHS~ciW~Ve~~p~nv~~~  385 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDHSLYVWDVRDVNK------------------------VGKCSSMLYHSACIWDVENLPCNVHSP  385 (1080)
T ss_pred             EEecCCCceEEEEEcCceEEEEecccccc------------------------ccceeeeeeccceeeeeccccccccCc
Confidence            35888888999999999999999983211                        11223334566666666544411    


Q ss_pred             ------CcEEEEEeCCCcEEEEeCCCCc---eEEE-----------------------------------EecCCceeEE
Q 045370           77 ------TTFFVSSSLDATCKVWDLGSGI---LIQT-----------------------------------QVYPQAVTAI  112 (350)
Q Consensus        77 ------~~~l~s~~~d~~v~vwd~~~~~---~~~~-----------------------------------~~~~~~v~~~  112 (350)
                            ...|+||+.|++|++||+..+.   ..+.                                   ......++++
T Consensus       386 ~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~  465 (1080)
T KOG1408|consen  386 TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRAL  465 (1080)
T ss_pred             ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEE
Confidence                  1348999999999999987521   1100                                   0011369999


Q ss_pred             EEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCC
Q 045370          113 AFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTR  187 (350)
Q Consensus       113 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~  187 (350)
                      +++|+|.+|++|..-|.+++|++...          +....+..|...|.|+.++...     |++++.|..|+|||...
T Consensus       466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l----------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  466 AVSPDGQHLASGDRGGNLRVYDLQEL----------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             EECCCcceecccCccCceEEEEehhh----------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            99999999999999999999999843          3334778999999999998543     99999999999999864


Q ss_pred             -ceEEEEeccCCCceeEEEEEccC--CeEEeeecCc
Q 045370          188 -RVSIRRFNHKKGVVTNLVVIRQS--SLLSEVSNCQ  220 (350)
Q Consensus       188 -~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~~~  220 (350)
                       ..++.++.+|...|+++.|.-.|  ..+++++.|.
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence             55778889999999999999887  5666666653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.74  E-value=7.3e-17  Score=139.13  Aligned_cols=196  Identities=20%  Similarity=0.261  Sum_probs=140.4

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      ..|+.+.+||.|.++|.......                     .....+.....|...|..+.|.+ ....|++++.|.
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDs  122 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDS  122 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEccCCc
Confidence            47899999999999998831111                     01233566789999999999988 668899999999


Q ss_pred             cEEEEeCCCCceEEE---EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccc-----------------ccc
Q 045370           88 TCKVWDLGSGILIQT---QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDH-----------------FIV  146 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------~~~  146 (350)
                      ++++||+.+..+...   ++|.+.+.++||+|. ...|++|+.||.|.|||++-......                 ...
T Consensus       123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            999999999887665   679999999999995 56889999999999999985441110                 000


Q ss_pred             ccccceeeeccCCc----eEEEEecCCe-EEEEeC-CCcEEEEECCCceEEEEe--------ccC---CCceeEEEEEcc
Q 045370          147 GEDQHSVLKGHNGS----ITALAFSASH-LISASE-DKTVCLWDVTRRVSIRRF--------NHK---KGVVTNLVVIRQ  209 (350)
Q Consensus       147 ~~~~~~~~~~~~~~----i~~~~~~~~~-l~s~~~-dg~v~iwd~~~~~~~~~~--------~~~---~~~v~~l~~~~~  209 (350)
                      ....+.....|...    |+.+.|-.+. ||+++. |+.|+|||++........        ..|   .-.+.++.....
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence            11122233344444    4445555555 898887 999999999986554332        122   225777888888


Q ss_pred             CCeEEeeecCcccccc
Q 045370          210 SSLLSEVSNCQRKLKK  225 (350)
Q Consensus       210 ~~~l~~~~~~~~~~~~  225 (350)
                      |.+|++.+.|+.++.+
T Consensus       283 Gt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFY  298 (720)
T ss_pred             CCeEEEEecCCcEEEE
Confidence            8888877777665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.74  E-value=1.3e-15  Score=129.83  Aligned_cols=196  Identities=11%  Similarity=0.110  Sum_probs=133.2

Q ss_pred             CeecCCCCEEEE-EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLIS-GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|+.+++ ++.|+.|++||+.+                           ...+..+. +...+.+++|++ ++.+
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~---------------------------~~~~~~~~-~~~~~~~~~~~~-dg~~  128 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIET---------------------------RKVLAEIP-VGVEPEGMAVSP-DGKI  128 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCC---------------------------CeEEeEee-CCCCcceEEECC-CCCE
Confidence            468999987755 45689999999982                           22222222 223457788865 6777


Q ss_pred             EEEEeCCC-cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           80 FVSSSLDA-TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        80 l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +++++.++ .+.+||..++...........+.+++|+|++.+++++ ..++.|.+||+.++...........   .....
T Consensus       129 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~  205 (300)
T TIGR03866       129 VVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP---GVHPE  205 (300)
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc---ccccc
Confidence            88877765 5677899988777665555667889999999988655 4689999999987643321110000   00001


Q ss_pred             CCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          158 NGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      ......++|+|++   +++.+.++.+.+||+.+++.+..+. +...+.+++|+|+|++|++++.....+.+|+..
T Consensus       206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            1124568899998   3444567789999999988876664 445789999999999998776544445555443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.73  E-value=1.5e-16  Score=132.19  Aligned_cols=219  Identities=16%  Similarity=0.163  Sum_probs=152.1

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccc--------cccccc----------cccEEEeeccccccceeeec
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELM--------HHSDQL----------DQRLIEMELRSLRSLLHYSL   61 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~~~~~~~~~~~   61 (350)
                      |.|+|.. ..+++.|.||+|+.-|+++...+.....        ......          -+.+-.++.+..+.....+.
T Consensus       240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~  319 (498)
T KOG4328|consen  240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR  319 (498)
T ss_pred             eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence            4688855 6889999999999999987443322221        111111          12112223333444455667


Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      -|...|.+++++|....+++|+|.|++.+|||++.-.     .+..+.|...|.++.|+|.+..|++.+.|..|++||..
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            7888999999999999999999999999999998632     25557899999999999998889999999999999985


Q ss_pred             ccccccccccccccceeee---ccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEE-EEE
Q 045370          137 FLLLEDHFIVGEDQHSVLK---GHNG--SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNL-VVI  207 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~---~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l-~~~  207 (350)
                      -...      ...+...+.   .+..  ......|.|+.  +++|..-..|-|+|-..++.+..+..... .|.++ .|+
T Consensus       400 ~~sa------~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  400 CISA------KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             cccc------cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence            1100      111111111   1112  23456799988  88888889999999999998888653333 55554 899


Q ss_pred             ccCCeEEeeecCcccccc
Q 045370          208 RQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       208 ~~~~~l~~~~~~~~~~~~  225 (350)
                      |-+..+++|++....+.+
T Consensus       474 P~~~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYV  491 (498)
T ss_pred             ccccceeccCCccceEEE
Confidence            999866667766544443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.8e-16  Score=127.16  Aligned_cols=167  Identities=17%  Similarity=0.222  Sum_probs=131.9

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcEEEEEeCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTFFVSSSLD   86 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d   86 (350)
                      ..+|++...|.|++||..                           +...+..+.++...+..+.|... .++.+.+|+.|
T Consensus        41 ~~vav~lSngsv~lyd~~---------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD   93 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG---------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD   93 (376)
T ss_pred             eeEEEEecCCeEEEEecc---------------------------chhhhheecCCCCcccceEEecCCCCCeeEEeccC
Confidence            468899999999999998                           57778888999999999999875 45779999999


Q ss_pred             CcEEEEeCCCCceEEEEe---cC-CceeEEEEcCCCcEEEEEcc----CCeEEEEeCCccccccccccccccceeeeccC
Q 045370           87 ATCKVWDLGSGILIQTQV---YP-QAVTAIAFHPGEQLLFAGSI----DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |+|++||++.......+.   ++ .+..+++.+-.++.+++|+.    +-.|.+||+|.....        .......|.
T Consensus        94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~  165 (376)
T KOG1188|consen   94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHN  165 (376)
T ss_pred             CeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--------hhhhhhhcc
Confidence            999999999866554432   22 45667776667788888864    678999999964321        122456799


Q ss_pred             CceEEEEecCCe---EEEEeCCCcEEEEECCCce----EEEEeccCCCceeEEEEEccC
Q 045370          159 GSITALAFSASH---LISASEDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      ..|+++.|+|..   |++||.||.|.|||+....    ++..+. |...|.++.|+..+
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKK  223 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCC
Confidence            999999999987   9999999999999997542    233333 67789999999887

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.72  E-value=1.4e-16  Score=125.49  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=128.8

Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc------------eEEE----EecCCceeEEEEcC-CCcEE
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI------------LIQT----QVYPQAVTAIAFHP-GEQLL  121 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~------------~~~~----~~~~~~v~~~~~~~-~~~~l  121 (350)
                      ....|.+.|+++...+..+.++++|+.||.|.+||+++..            ++..    -.|.-.|.++.|-| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3457999999999999899999999999999999997532            1101    12566799999999 66688


Q ss_pred             EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCCceEEEEecc
Q 045370          122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTRRVSIRRFNH  196 (350)
Q Consensus       122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~  196 (350)
                      .+++-|.++++||..+......+           ..++.|++-+++|-.     +|+|..|-.|++-|+.+|..-+.+.+
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F-----------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDF-----------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             ecccccceEEEeecccceeeEEe-----------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            88999999999999865433222           234677777888754     78888889999999999999999999


Q ss_pred             CCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370          197 KKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       197 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                      |.+.|.++.|+|...+++..++.+..+++|+++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            9999999999999998776666666666665543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.2e-15  Score=129.95  Aligned_cols=183  Identities=19%  Similarity=0.254  Sum_probs=141.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~   79 (350)
                      ||||.+.+.||.+-.||.|-||++..                          ...+...+. +-...|-+++|.  ++..
T Consensus        31 lA~s~kS~~lAvsRt~g~IEiwN~~~--------------------------~w~~~~vi~g~~drsIE~L~W~--e~~R   82 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSRTDGNIEIWNLSN--------------------------NWFLEPVIHGPEDRSIESLAWA--EGGR   82 (691)
T ss_pred             EEEeccCCceeeeccCCcEEEEccCC--------------------------CceeeEEEecCCCCceeeEEEc--cCCe
Confidence            58999999999999999999999982                          111222233 345789999997  3445


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |.+.+.+|.|.-||+.+++....+. ..+.|.+++.+|.+..++.|+.||.++.++...+......        .+.-..
T Consensus        83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r--------~l~rq~  154 (691)
T KOG2048|consen   83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR--------SLMRQK  154 (691)
T ss_pred             EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe--------eccccc
Confidence            8888999999999999999888865 6678999999999999999999998888887755433221        333446


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--------cCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--------HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +.|.++.|+|++  +++|+.||.|++||..++..++...        ....-|+++.|-.++.++. |.+.+
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s-gDS~G  225 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS-GDSAG  225 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE-ecCCc
Confidence            899999999999  8999999999999999988777321        1223578888886665544 55443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.71  E-value=6e-16  Score=129.98  Aligned_cols=171  Identities=17%  Similarity=0.198  Sum_probs=136.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l   80 (350)
                      .++....|||+++..|.|.|..+.+                           +.....+. +....|.-+.|++....+|
T Consensus       128 ~YN~~DeyiAsvs~gGdiiih~~~t---------------------------~~~tt~f~~~sgqsvRll~ys~skr~lL  180 (673)
T KOG4378|consen  128 DYNNTDEYIASVSDGGDIIIHGTKT---------------------------KQKTTTFTIDSGQSVRLLRYSPSKRFLL  180 (673)
T ss_pred             EecCCcceeEEeccCCcEEEEeccc---------------------------CccccceecCCCCeEEEeecccccceee
Confidence            4566778999999999999999883                           22222222 2245566788888777889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      .+++++|.|.+||+....+...+  .|..+...|||+| +..+|++.+.|..|++||.+......          .+ ..
T Consensus       181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l-~y  249 (673)
T KOG4378|consen  181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RL-TY  249 (673)
T ss_pred             EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------ee-ee
Confidence            99999999999999987777664  4899999999999 45678889999999999998543322          11 23


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccC
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      ..+...++|.++|  |+.|+..|.|..||++. ..++..+..|...|++++|-|..
T Consensus       250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            4578899999999  99999999999999996 56788888999999999998764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=5.7e-16  Score=121.75  Aligned_cols=180  Identities=14%  Similarity=0.250  Sum_probs=140.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      |-+++.++|-|-+..|||++++                        ..+.....+.+|..+|..++|...+...|++.|.
T Consensus       162 dp~~igtSSiDTTCTiWdie~~------------------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga  217 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETG------------------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA  217 (364)
T ss_pred             CcceeEeecccCeEEEEEEeec------------------------cccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence            4578999999999999999931                        0123445678999999999998866789999999


Q ss_pred             CCcEEEEeCCCCceEEEE---ec-CCceeEEEEcCC-CcEEEEEccC-CeEEEEeCCccccccccccccccceeeeccCC
Q 045370           86 DATCKVWDLGSGILIQTQ---VY-PQAVTAIAFHPG-EQLLFAGSID-GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~---~~-~~~v~~~~~~~~-~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ||+|++||++.......+   +. ..+...++|++. -+++++-..| ..|.+.|++.         ...++..+.+|.+
T Consensus       218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~---------P~tpva~L~~H~a  288 (364)
T KOG0290|consen  218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV---------PCTPVARLRNHQA  288 (364)
T ss_pred             CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC---------CCcceehhhcCcc
Confidence            999999999976543332   22 457889999984 4677776555 6899999994         5677779999999


Q ss_pred             ceEEEEecCCe---EEEEeCCCcEEEEECCCce------EEEEeccCCCceeEEEEEcc-CCeEEeeecC
Q 045370          160 SITALAFSASH---LISASEDKTVCLWDVTRRV------SIRRFNHKKGVVTNLVVIRQ-SSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~~  219 (350)
                      .|+.++|.|..   +.+++.|..+-+||+...-      ++..+. ..+.|..+.|++. +.+++.+.+.
T Consensus       289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            99999999976   9999999999999997521      222233 4568999999965 5688866654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=2.6e-16  Score=131.05  Aligned_cols=212  Identities=14%  Similarity=0.192  Sum_probs=162.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc------------cccccccEEEeeccccccceeeeccccCCce
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSVT   68 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~   68 (350)
                      +.|+.+|++|+.|+.-|.|-.+|+.+...........            ...+.+..|.+-..+.+..+.++..| ..|.
T Consensus       135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~~v~  213 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-IRVA  213 (545)
T ss_pred             eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-Cchh
Confidence            4678899999999999999999998755443322211            11223344444444455666666554 5677


Q ss_pred             EEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc
Q 045370           69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        69 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      .+.|.| ..-+|++++..|.++.-|+.+|+.+..+. ..+.+..++-+|.+..+-+|..+|+|.+|...          .
T Consensus       214 rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~----------s  282 (545)
T KOG1272|consen  214 RLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN----------S  282 (545)
T ss_pred             hhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC----------C
Confidence            888877 55678899999999999999999988865 45678889999999999999999999999988          3


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .+++..+-.|.++|.++++.++|  ++|++.|..++|||++....+.++.. ..+...+++|..|-+.++-+....+|..
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence            45555777999999999999999  99999999999999998877766654 4567888898777665544444555544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.1e-15  Score=127.15  Aligned_cols=221  Identities=16%  Similarity=0.133  Sum_probs=140.8

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccc--------cccccccccEEEeeccccccceeeeccc----cCCc
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELM--------HHSDQLDQRLIEMELRSLRSLLHYSLEH----KSSV   67 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v   67 (350)
                      |..||||+|+ |||-.--.|++||+.+.........        ..+......++.-..+........-..+    ...-
T Consensus        57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G  136 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG  136 (703)
T ss_pred             eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC
Confidence            4679999975 6777889999999986443221111        1111111111111110000000000111    1233


Q ss_pred             eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .+++++.++..+++ ++....|.-+++..|..+..+... +.+++|..++-..+|++|+.+|.|..||.+..........
T Consensus       137 RDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            55667666666554 445667888999999988887644 7899999999999999999999999999986543322111


Q ss_pred             ccccceeeeccCC-----ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeec
Q 045370          147 GEDQHSVLKGHNG-----SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       147 ~~~~~~~~~~~~~-----~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                          ...+..|.+     .|+++.|+.+|  +++|..+|.|.|||+++.+++..-. ...-+|..+.|.+.+..=...+-
T Consensus       216 ----~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  216 ----ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             ----ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence                112333444     49999999988  9999999999999999988876554 23447888888777433333445


Q ss_pred             Cccccccc
Q 045370          219 CQRKLKKD  226 (350)
Q Consensus       219 ~~~~~~~~  226 (350)
                      |.+++++|
T Consensus       292 Dk~~~kiW  299 (703)
T KOG2321|consen  292 DKRILKIW  299 (703)
T ss_pred             chHHhhhc
Confidence            55566655

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=1.5e-15  Score=119.48  Aligned_cols=163  Identities=17%  Similarity=0.204  Sum_probs=125.3

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce----EEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeC
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL----IQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~  135 (350)
                      ..+..++++..|+.-+.+++.+++-|.+..|||+.++..    .+.+.|..+|..++|...+ ..|++.+.||.+++||+
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            457789999999998999999999999999999999733    3347899999999999865 47889999999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCC-CcEEEEECCC-ceEEEEeccCCCceeEEEEEccC
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED-KTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~d-g~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      +.......       +..-.....+...++|++..   +|+-..| ..|.|.|+|. ..++.++.+|.+.|..++|.|..
T Consensus       227 R~leHSTI-------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  227 RSLEHSTI-------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             cccccceE-------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence            96543221       11112224577888888765   6666555 4699999997 56788999999999999999997


Q ss_pred             CeEEeeecCccccccccCCc
Q 045370          211 SLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~~~  230 (350)
                      ..-+++++|+....+|++..
T Consensus       300 ~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  300 SSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CceeeecCCcceEEEEeccc
Confidence            65555666655555555443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=3.6e-15  Score=118.83  Aligned_cols=199  Identities=18%  Similarity=0.171  Sum_probs=152.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .+|++|+..+|.+.....|.||.....                        ..-....++..|...|+++.|.+ ..+.|
T Consensus        16 hAwn~drt~iAv~~~~~evhiy~~~~~------------------------~~w~~~htls~Hd~~vtgvdWap-~snrI   70 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNNHEVHIYSMLGA------------------------DLWEPAHTLSEHDKIVTGVDWAP-KSNRI   70 (361)
T ss_pred             eeecCCCceEEeccCCceEEEEEecCC------------------------CCceeceehhhhCcceeEEeecC-CCCce
Confidence            379999999999999999999988721                        12356678899999999999977 55679


Q ss_pred             EEEeCCCcEEEEeC-CCCce---EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDL-GSGIL---IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~-~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++|+.|..-.||.. ..++.   +..+.+....+++.|+|.++.|++|+....|.+|-++...--  ++..    ..-+.
T Consensus        71 vtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsK----hikkP  144 (361)
T KOG1523|consen   71 VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSK----HIKKP  144 (361)
T ss_pred             eEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhh----hhCCc
Confidence            99999999999998 44443   333678999999999999999999999999999887642211  1100    12234


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECC-----C-------------ceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVT-----R-------------RVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      +...|+++.|+|++  |++|+.|+..|||...     .             |+++.++....+.+..+.|+|+|..|+-.
T Consensus       145 irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  145 IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            66889999999999  8999999999999642     1             23344444456789999999999999988


Q ss_pred             ecCccccccccCCc
Q 045370          217 SNCQRKLKKDRMPS  230 (350)
Q Consensus       217 ~~~~~~~~~~~~~~  230 (350)
                      +.|..+-......+
T Consensus       225 ~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGP  238 (361)
T ss_pred             cCCCceEEeecCCC
Confidence            88765554443333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.67  E-value=1.7e-15  Score=119.04  Aligned_cols=149  Identities=15%  Similarity=0.229  Sum_probs=116.0

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce-EEEE------ecCCceeEEEEcC--CCcEEEEEccCCeEEE
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL-IQTQ------VYPQAVTAIAFHP--GEQLLFAGSIDGRIFV  132 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i  132 (350)
                      .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. ...+      .+....++-+|+|  +++.+++.+ |+++..
T Consensus       121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~  197 (370)
T KOG1007|consen  121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF  197 (370)
T ss_pred             HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEE
Confidence            5567999999987 666666654 89999999987655 2222      2455678889998  677777665 899999


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEc
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      ||+++.....         ..-..|...|..+.|+|+.   |++|+.||.|+|||.|. ..++.++.+|...|+++.|+|
T Consensus       198 ~D~RT~~~~~---------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  198 WDLRTMKKNN---------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             EEccchhhhc---------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence            9999644322         1334788899999999997   99999999999999986 557889999999999999999


Q ss_pred             cC-CeEEeeecCccc
Q 045370          209 QS-SLLSEVSNCQRK  222 (350)
Q Consensus       209 ~~-~~l~~~~~~~~~  222 (350)
                      .. +++++++.|.++
T Consensus       269 ~hdqLiLs~~SDs~V  283 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAV  283 (370)
T ss_pred             ccceEEEecCCCcee
Confidence            86 566666666443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=7.6e-16  Score=130.54  Aligned_cols=194  Identities=15%  Similarity=0.182  Sum_probs=142.5

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      ..|+.++.||.+.|.+-.                            ........+|.+.+.+-.|++ +|.-|++++.||
T Consensus        76 d~~~i~s~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG  126 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSP-DGAGLLTAGEDG  126 (737)
T ss_pred             ceEEEEcCCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCC-CCceeeeecCCc
Confidence            467788889999888754                            556667789999999999976 677799999999


Q ss_pred             cEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEe
Q 045370           88 TCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF  166 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (350)
                      .|++|.-. |-+... .....+|.|++|.|+.+.++-+. .+.+.+=.+.          ....+..++.|.+-|.++.|
T Consensus       127 ~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W  194 (737)
T KOG1524|consen  127 VIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLA----------ANSKIIRWRAHDGLVLSLSW  194 (737)
T ss_pred             eEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecc----------cccceeEEeccCcEEEEeec
Confidence            99999944 433333 34567899999999877655543 3556665554          33344578899999999999


Q ss_pred             cCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccccCCCCccccccc
Q 045370          167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEM  244 (350)
Q Consensus       167 ~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (350)
                      ++..  +++|++|-..+|||.. |+.+..-..|..+|++++|.|+ ..++.++.....+.    .+...-+...+++.++
T Consensus       195 ~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~----~p~~GSifnlsWS~DG  268 (737)
T KOG1524|consen  195 STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS----SPRVGSIFNLSWSADG  268 (737)
T ss_pred             CccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeeeeeeec----CCCccceEEEEEcCCC
Confidence            9977  9999999999999986 6777777789999999999999 55555665533321    1112223344556665


Q ss_pred             eEEe
Q 045370          245 VILL  248 (350)
Q Consensus       245 ~~~~  248 (350)
                      ....
T Consensus       269 TQ~a  272 (737)
T KOG1524|consen  269 TQAT  272 (737)
T ss_pred             ceee
Confidence            5444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=3.5e-16  Score=135.16  Aligned_cols=197  Identities=17%  Similarity=0.124  Sum_probs=139.1

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      +.|+| |...||.++.||.|++|.+..+.....                    ...+...+..|.+.|.++.|+|--.+.
T Consensus       633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------------~~tPe~~lt~h~eKI~slRfHPLAadv  692 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------------EMTPEKILTIHGEKITSLRFHPLAADV  692 (1012)
T ss_pred             cccCCCChHHeeecccCceEEEEEeccCCCCcc--------------------cCCcceeeecccceEEEEEecchhhhH
Confidence            35677 667899999999999999985433322                    244556678999999999999988889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc-
Q 045370           80 FVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH-  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-  157 (350)
                      |+++++|-+|++||+.+++.... ..|.+.|..++|+|+|+.+++.+.||.|++|+.+....         +++.-.+. 
T Consensus       693 La~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------pv~Eg~gpv  763 (1012)
T KOG1445|consen  693 LAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------PVYEGKGPV  763 (1012)
T ss_pred             hhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------ccccCCCCc
Confidence            99999999999999999877665 56999999999999999999999999999999986432         22222221 


Q ss_pred             CCceEEEEecCCe--EEEEeCC----CcEEEEECCCc--eEEEEeccCC-CceeEEEEEccCCeEEeeecCccccccc
Q 045370          158 NGSITALAFSASH--LISASED----KTVCLWDVTRR--VSIRRFNHKK-GVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~d----g~v~iwd~~~~--~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ...--.+.|.-++  +++.+.|    ..|.+||..+.  ..+.+..... ..+.--.+.+|...|+..+..++.++.+
T Consensus       764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY  841 (1012)
T ss_pred             cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEE
Confidence            1223345666666  5554444    56888887653  3343332111 1122224667777666666666655555

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=128.23  Aligned_cols=172  Identities=15%  Similarity=0.182  Sum_probs=134.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|+|||.-|+|++.||.|++|.-.                            +.+..++.....+|.|++|.|...+.++
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWSrs----------------------------GMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWSRS----------------------------GMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEecc----------------------------chHHHHHhhcCceeEEEEECCCCCceEE
Confidence            589999999999999999999865                            5555566778899999999887777666


Q ss_pred             EEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +.+  +.+.+=-+.-. ++++--.|.+-|.++.|++..+.+++|+.|-..++||-.           +.....-..|.-+
T Consensus       163 c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-----------G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  163 CQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-----------GANLFTSAAEEYA  229 (737)
T ss_pred             ecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-----------CcccccCChhccc
Confidence            655  55555555433 445556799999999999999999999999999999976           3333455678899


Q ss_pred             eEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          161 ITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      |++++|+|+. ++.++.+ ++|+           -....+.|..++||+||..+++|.+.+.++..+
T Consensus       230 ITSva~npd~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  230 ITSVAFNPEKDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeeeeccccceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            9999999998 6666543 4441           123467899999999999999888877666544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.66  E-value=1e-15  Score=125.45  Aligned_cols=189  Identities=16%  Similarity=0.249  Sum_probs=141.5

Q ss_pred             eecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|.+++. .|+||+.|..|++|-+++.......                  ..-.....+..|...|+++.|++ +++++
T Consensus        20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------------~~V~y~s~Ls~H~~aVN~vRf~p-~gelL   80 (434)
T KOG1009|consen   20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------------MKVEYLSSLSRHTRAVNVVRFSP-DGELL   80 (434)
T ss_pred             EeccCcccceecccCccceeeeeeeecCCCCCc------------------eeEEEeecccCCcceeEEEEEcC-CcCee
Confidence            4666665 9999999999999998842221110                  01234556788999999999966 78999


Q ss_pred             EEEeCCCcEEEEeCC--------C-----C-ceE--EE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           81 VSSSLDATCKVWDLG--------S-----G-ILI--QT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~--------~-----~-~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      ++|+.+|.|.+|-..        +     . ..+  .. ..|...+..++|+|+++++++++.|..+++||+..+..   
T Consensus        81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l---  157 (434)
T KOG1009|consen   81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL---  157 (434)
T ss_pred             eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee---
Confidence            999999999999876        2     1 111  11 24788999999999999999999999999999996543   


Q ss_pred             cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec---------c----------CC----
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN---------H----------KK----  198 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~---------~----------~~----  198 (350)
                             ...+..|...+..++|.|-.  +++-+.|...+.+++...+.+..+.         .          |.    
T Consensus       158 -------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk  230 (434)
T KOG1009|consen  158 -------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK  230 (434)
T ss_pred             -------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence                   33677899999999999987  8888888878888776544332221         0          11    


Q ss_pred             CceeEEEEEccCCeEEeeecC
Q 045370          199 GVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       199 ~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .-...++|+|+|.+|++.+..
T Consensus       231 sFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  231 SFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             hhhhhcccCCCCcEEEcccce
Confidence            135678899999999977653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=5.8e-15  Score=126.78  Aligned_cols=187  Identities=14%  Similarity=0.206  Sum_probs=137.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |..+|.|.+|++|+.||+|+||.+.                           ++.++.... ..+.|.|++|+|.....+
T Consensus       406 iSvdp~G~wlasGsdDGtvriWEi~---------------------------TgRcvr~~~-~d~~I~~vaw~P~~~~~v  457 (733)
T KOG0650|consen  406 ISVDPSGEWLASGSDDGTVRIWEIA---------------------------TGRCVRTVQ-FDSEIRSVAWNPLSDLCV  457 (733)
T ss_pred             EEecCCcceeeecCCCCcEEEEEee---------------------------cceEEEEEe-ecceeEEEEecCCCCcee
Confidence            3567899999999999999999999                           456655543 445889999987554434


Q ss_pred             EEEeCCCcEEEEeCCCC--------------------------------------ceEEEEecCCceeEEEEcCCCcEEE
Q 045370           81 VSSSLDATCKVWDLGSG--------------------------------------ILIQTQVYPQAVTAIAFHPGEQLLF  122 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~  122 (350)
                      +....+..+.+-+..-|                                      .+-..+.|...|..+.||..|.||+
T Consensus       458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            44333443444332111                                      1112356888999999999999999


Q ss_pred             EEccC---CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370          123 AGSID---GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK  197 (350)
Q Consensus       123 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~  197 (350)
                      +...+   ..|.|+++......          .-|....+.|.++.|+|..  |++++ ...|+|||+..+.+++.+...
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ----------~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg  606 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQ----------SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG  606 (733)
T ss_pred             EeccCCCcceEEEEeccccccc----------CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC
Confidence            97654   57888888754322          1333455789999999988  55555 558999999998888888767


Q ss_pred             CCceeEEEEEccCCeEEeeecCccccccc
Q 045370          198 KGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       198 ~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ...|.+++.+|.|.-|++++.+.++++..
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfD  635 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFD  635 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence            77899999999999999899888776554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=8.8e-16  Score=125.83  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=127.1

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce------EEE---E-ecCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL------IQT---Q-VYPQAVTAIAFHPGEQLLFAGSIDGRIFV  132 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------~~~---~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  132 (350)
                      ...+|..+.|.......++||+.|..|++|.+..+..      +..   + .|...|+++.|+|+|..+++|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            4577888888776556899999999999999865321      111   2 38899999999999999999999999999


Q ss_pred             EeCCccccccc------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEE
Q 045370          133 SPLKFLLLEDH------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNL  204 (350)
Q Consensus       133 ~d~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  204 (350)
                      |-...-.....      ........+.+.+|...|..++|+|++  +++++.|..+++||+..|+.+..+..|...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            98763111000      000112234677899999999999999  9999999999999999999999999999999999


Q ss_pred             EEEccCCeEEeeecCc
Q 045370          205 VVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       205 ~~~~~~~~l~~~~~~~  220 (350)
                      +|.|-++++++-+.+.
T Consensus       172 awDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDR  187 (434)
T ss_pred             ecchhhhhhhhhccCc
Confidence            9999999999877764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=115.93  Aligned_cols=167  Identities=17%  Similarity=0.214  Sum_probs=116.8

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcCCCcEEEEEc-cCCeE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRI  130 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  130 (350)
                      +..+.+|.+.|++++|++ +|..|+|++.|++|++|+++...     +++.--.-+..+.+.|.||.+-+++.. ....+
T Consensus        79 ~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            456789999999999976 78899999999999999998642     222211223678999999988665544 45689


Q ss_pred             EEEeCCccccccc-c-ccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          131 FVSPLKFLLLEDH-F-IVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       131 ~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      ++|-+........ . .........-..|...+..+-...++  +++++.|..|.+||++ |+.+..+......-+..+.
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            9997754322110 0 00111111223456667777666666  9999999999999999 8888888766666777888


Q ss_pred             EccCCeEEeeec--Ccccccc
Q 045370          207 IRQSSLLSEVSN--CQRKLKK  225 (350)
Q Consensus       207 ~~~~~~l~~~~~--~~~~~~~  225 (350)
                      ||+|+++++++-  |..+|..
T Consensus       237 SP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEE
Confidence            899998887664  3455543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.64  E-value=2.9e-14  Score=124.18  Aligned_cols=180  Identities=17%  Similarity=0.211  Sum_probs=135.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|-|||..|+.+. +..+.+||..                           .+..+..+.+|.+.|.+++|+. +|..+
T Consensus        18 ~afkPDGsqL~lAA-g~rlliyD~n---------------------------dG~llqtLKgHKDtVycVAys~-dGkrF   68 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAA-GSRLLVYDTS---------------------------DGTLLQPLKGHKDTVYCVAYAK-DGKRF   68 (1081)
T ss_pred             eEECCCCceEEEec-CCEEEEEeCC---------------------------CcccccccccccceEEEEEEcc-CCcee
Confidence            58999999887774 4569999998                           5888999999999999999966 78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec---------------------------------------CCceeEEEEcCCCcEE
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY---------------------------------------PQAVTAIAFHPGEQLL  121 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~~~~~l  121 (350)
                      ++|+.|..|.+|...-...+. +.|                                       ...+.+++|..||.++
T Consensus        69 ASG~aDK~VI~W~~klEG~Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyl  147 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKLEGILK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYL  147 (1081)
T ss_pred             ccCCCceeEEEecccccceee-eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEE
Confidence            999999999999865321111 111                                       1357788888899999


Q ss_pred             EEEccCCeEEEEeCCccccccccccccccce--eeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCCceEEE
Q 045370          122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS--VLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTRRVSIR  192 (350)
Q Consensus       122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~~~~~~  192 (350)
                      +.|-.||+|.+-+-.          ..+.+.  .-.+...+|.+++|+|+.       +++.....++.+|.+. |+.+.
T Consensus       148 alG~~nGTIsiRNk~----------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Ig  216 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKN----------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIG  216 (1081)
T ss_pred             EEeccCceEEeecCC----------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeec
Confidence            999999999886433          111111  222467899999999864       8888888899999886 55554


Q ss_pred             EeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          193 RFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       193 ~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .-..-.-...|+.+.|+|.+++.|+.+..
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCCc
Confidence            33333345678999999999998877743

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.63  E-value=2.9e-15  Score=129.59  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=136.6

Q ss_pred             ecCCCCEEEE--EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            3 FSDDGFLLIS--GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         3 ~s~dg~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |..+..++|.  .+.-|.|-||++..+.+...                      . +.-.......|+.+.|.|-+.+.|
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD----------------------g-v~p~l~Ngt~vtDl~WdPFD~~rL  643 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD----------------------G-VMPGLFNGTLVTDLHWDPFDDERL  643 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc----------------------c-cccccccCceeeecccCCCChHHe
Confidence            3444455543  34568899999884322111                      1 111123557789999999898999


Q ss_pred             EEEeCCCcEEEEeCCCCce-------EEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGIL-------IQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~-------~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +.++.||.|++|.+..+..       ... ..|...|+++.||| ....|++++.|-+|++||+.+..          ..
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~----------~~  713 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK----------LY  713 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh----------hh
Confidence            9999999999999876532       222 24788999999999 55789999999999999999543          33


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCC-CceeEEEEEccCCeEEeeecC
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKK-GVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ..+.+|.+.|..++|+|+|  +++.+.||+|++|..+++. ++++-.+.. ..-..+.|.-+|+++++.+-+
T Consensus       714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            4788999999999999999  9999999999999998754 444433222 234567888999998877765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=7e-15  Score=120.28  Aligned_cols=185  Identities=15%  Similarity=0.104  Sum_probs=135.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |.||.++++|++|+.|..+++|+++...                     .....+++.. -..|...|.|++|.. ++.+
T Consensus        62 lqFS~N~~~L~SGGDD~~~~~W~~de~~---------------------~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~  119 (609)
T KOG4227|consen   62 LQFSHNDRFLASGGDDMHGRVWNVDELM---------------------VRKTPKPIGVMEHPHRSNIFSLEFDL-ENRF  119 (609)
T ss_pred             eeeccCCeEEeecCCcceeeeechHHHH---------------------hhcCCCCceeccCccccceEEEEEcc-CCee
Confidence            5799999999999999999999998311                     1112223322 345668999999976 5678


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCC---ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +++|+.+++|.+.|+.+.+.+..+.|..   .|..+..+|..+.|++.+.+|.|.+||.+......       .......
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~-------~~~~~AN  192 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI-------SLVLPAN  192 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC-------ceeeecC
Confidence            9999999999999999999998887665   89999999999999999999999999998533111       1112223


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCce-EEEEecc------CCCceeEEEEEccCCeEE
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRV-SIRRFNH------KKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~-~~~~~~~------~~~~v~~l~~~~~~~~l~  214 (350)
                      .......+.|+|..   |++.+..+-+-+||.+..+ .+....+      ....-.++.|+|+|..|+
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence            44567788899877   8888899999999998643 2222211      111234556777766554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.5e-14  Score=120.35  Aligned_cols=160  Identities=22%  Similarity=0.225  Sum_probs=118.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~   79 (350)
                      ++|+.||.+|++||.|-.+.|||.-.                          .+.....-.+|...|.++.|.|..+ .+
T Consensus        56 LeWn~dG~lL~SGSDD~r~ivWd~~~--------------------------~KllhsI~TgHtaNIFsvKFvP~tnnri  109 (758)
T KOG1310|consen   56 LEWNADGELLASGSDDTRLIVWDPFE--------------------------YKLLHSISTGHTANIFSVKFVPYTNNRI  109 (758)
T ss_pred             eeecCCCCEEeecCCcceEEeecchh--------------------------cceeeeeecccccceeEEeeeccCCCeE
Confidence            57999999999999999999999862                          1233344579999999999998654 67


Q ss_pred             EEEEeCCCcEEEEeCCCCc----------eEEE-EecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGI----------LIQT-QVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~----------~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      +++|..|..|+++|+...+          .... .-|...|..++..|++ +.+++++.||+|+.||++...........
T Consensus       110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~  189 (758)
T KOG1310|consen  110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC  189 (758)
T ss_pred             EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence            8899999999999998521          1111 2377789999999988 79999999999999999964332211101


Q ss_pred             cccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC
Q 045370          148 EDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT  186 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~  186 (350)
                      ......+...--...|+.++|..   |++|+.|-..++||.+
T Consensus       190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            11111222222456788999876   9999999999999953

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=1e-15  Score=136.09  Aligned_cols=184  Identities=24%  Similarity=0.359  Sum_probs=146.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|+..|.++++|+.|..|+||.++                           ...++....+|.+.|+.++.+. ++.+++
T Consensus       197 ~fDrtg~~Iitgsdd~lvKiwS~e---------------------------t~~~lAs~rGhs~ditdlavs~-~n~~ia  248 (1113)
T KOG0644|consen  197 IFDRTGRYIITGSDDRLVKIWSME---------------------------TARCLASCRGHSGDITDLAVSS-NNTMIA  248 (1113)
T ss_pred             eeccccceEeecCccceeeeeecc---------------------------chhhhccCCCCccccchhccch-hhhhhh
Confidence            578899999999999999999988                           5778888999999999999855 667899


Q ss_pred             EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc--------------------
Q 045370           82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL--------------------  140 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------------  140 (350)
                      +++.|..|++|.+.++.++.. .+|.+.|++++|+|-.    +.+.||++++||.+-...                    
T Consensus       249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             hcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence            999999999999999998877 5799999999999965    667799999999871000                    


Q ss_pred             ---------------------------------ccc--------------------cccccccceeeeccCCceEEEEec
Q 045370          141 ---------------------------------EDH--------------------FIVGEDQHSVLKGHNGSITALAFS  167 (350)
Q Consensus       141 ---------------------------------~~~--------------------~~~~~~~~~~~~~~~~~i~~~~~~  167 (350)
                                                       ...                    ..........+.+|...+..+.++
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence                                             000                    000111222445677888889999


Q ss_pred             CCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          168 ASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       168 ~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      |-.   ..+++.||...|||+-.|.+++.+....+.+....||++|..++...
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence            876   77889999999999999998887764456777788999988777443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.61  E-value=1.6e-13  Score=122.29  Aligned_cols=187  Identities=21%  Similarity=0.311  Sum_probs=144.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS   84 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~   84 (350)
                      =|.+++++..++.+.||+......+                      ............+.|+++.- |+. =+.++.|+
T Consensus       123 fGe~lia~d~~~~l~vw~~s~~~~e----------------------~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs  179 (910)
T KOG1539|consen  123 FGEHLIAVDISNILFVWKTSSIQEE----------------------LYLQSTFLKVEGDFITALLH-PSTYLNKIVVGS  179 (910)
T ss_pred             ecceEEEEEccCcEEEEEecccccc----------------------ccccceeeeccCCceeeEec-chhheeeEEEee
Confidence            3667777778888888877631000                      00011222223333777743 422 25589999


Q ss_pred             CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           85 LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      .+|.+.+|++++++.+..+. +...|+++.=+|-=..++.|..+|.|.+++++.          .+.+..++...+.|+.
T Consensus       180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~----------dkil~sFk~d~g~Vts  249 (910)
T KOG1539|consen  180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF----------DKILMSFKQDWGRVTS  249 (910)
T ss_pred             cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc----------CcEEEEEEccccceeE
Confidence            99999999999999999975 678899999999889999999999999999994          4445566655799999


Q ss_pred             EEecCCe---EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          164 LAFSASH---LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       164 ~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +.|..||   +++|+..|.+-+||+...+.+..+. .|.+.|....|.|....+++++.| ..+..|
T Consensus       250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~  315 (910)
T KOG1539|consen  250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVW  315 (910)
T ss_pred             EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEE
Confidence            9999998   8999999999999999988888776 788999999999999999988877 444444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.60  E-value=1.8e-13  Score=121.86  Aligned_cols=203  Identities=19%  Similarity=0.267  Sum_probs=141.4

Q ss_pred             eecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC-cE
Q 045370            2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT-TF   79 (350)
Q Consensus         2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~   79 (350)
                      .|+| +..+||.|..+|.|.+||+.......                     ....-.....|..+++.+.|..... .-
T Consensus       249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~~~v~~vvW~~~~~~~~  307 (555)
T KOG1587|consen  249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHSEPVTAVVWLQNEHNTE  307 (555)
T ss_pred             EeccCCcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCCcCeEEEEEeccCCCCc
Confidence            5677 45688999999999999998422111                     0112223457899999999976322 34


Q ss_pred             EEEEeCCCcEEEEeCCCCceE------EEEe-------cCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGILI------QTQV-------YPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~------~~~~-------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      |++++.||.|..|+++.-...      ....       ....++++.|.+ +...|++|+.+|.|..-+.........  
T Consensus       308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--  385 (555)
T KOG1587|consen  308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--  385 (555)
T ss_pred             eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--
Confidence            888899999999998753321      1111       234688999998 556899999999998743332111110  


Q ss_pred             cccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC-CceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT-RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ...+....+..|.++|+++.++|-+   +++++ |.+|+||... ...++..+..+...|++++|||...-++++.....
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence            1112233556788999999999987   55555 9999999988 67778888777888999999999987776666666


Q ss_pred             ccccccC
Q 045370          222 KLKKDRM  228 (350)
Q Consensus       222 ~~~~~~~  228 (350)
                      .+.+|++
T Consensus       465 ~l~iWDL  471 (555)
T KOG1587|consen  465 NLDIWDL  471 (555)
T ss_pred             ceehhhh
Confidence            6677755

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.3e-13  Score=110.60  Aligned_cols=152  Identities=19%  Similarity=0.248  Sum_probs=117.6

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cCCceeEEEEcCCCcEEEEEc--cCCeEEEEe
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YPQAVTAIAFHPGEQLLFAGS--IDGRIFVSP  134 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d  134 (350)
                      .....+|.++..+   .+.|+.+-.+. |.|||+++.++++++.    ++..+.++.+++.+.+++--+  ..|.|.+||
T Consensus        84 ~~fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   84 IFFPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EecCCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            3456678888773   45577766554 9999999999998864    344455666666666777533  359999999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCc-EEEEECCCceEEEEeccC--CCceeEEEEEcc
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKT-VCLWDVTRRVSIRRFNHK--KGVVTNLVVIRQ  209 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~-v~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~  209 (350)
                      ..          ...++..+..|.+.+.+++|+++|  ||++++.|+ ||||.+.+|+.+.+|...  ...|.+++|+|+
T Consensus       160 ~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  160 TI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             cc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            98          455666888999999999999999  999999886 799999999999999732  336899999999


Q ss_pred             CCeEEeeecCc--cccccc
Q 045370          210 SSLLSEVSNCQ--RKLKKD  226 (350)
Q Consensus       210 ~~~l~~~~~~~--~~~~~~  226 (350)
                      +++|++.++.+  .++++.
T Consensus       230 s~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCeEEEecCCCeEEEEEec
Confidence            99999777653  455554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5.3e-14  Score=112.04  Aligned_cols=215  Identities=13%  Similarity=0.135  Sum_probs=139.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc------ccccc------------cEEEeeccccccceee-ec
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS------DQLDQ------------RLIEMELRSLRSLLHY-SL   61 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~------------~~~~~~~~~~~~~~~~-~~   61 (350)
                      ++||+||+.|+|+|.|..|.+||+..+...........      .+...            .+..+..+ ....+.. -.
T Consensus        71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d  149 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDD  149 (405)
T ss_pred             EEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCc
Confidence            58999999999999999999999987653322221110      01111            11111110 0000000 01


Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      +....+.+..++...|+++++|...|.+.++|..+.+++..+..  ...|..+.++..|..|+.-+.|..|+.|+++.-.
T Consensus       150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence            11111111123455789999999999999999999999988763  3689999999999999999999999999987432


Q ss_pred             cccccccccccceeeec--cCCceEEEEecCCe-EEEE--eCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeE
Q 045370          140 LEDHFIVGEDQHSVLKG--HNGSITALAFSASH-LISA--SEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLL  213 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~-l~s~--~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l  213 (350)
                      ...... ..++...+..  ....=.+++|+.+| ++++  ..-..++||....|.+++.+.+.. .....+.|+|-..++
T Consensus       230 ~~~r~~-e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i  308 (405)
T KOG1273|consen  230 DEGRDG-EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII  308 (405)
T ss_pred             ccCccC-CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence            221100 0011111111  12334567888888 3333  345679999999999999998877 468889999999988


Q ss_pred             Eeee
Q 045370          214 SEVS  217 (350)
Q Consensus       214 ~~~~  217 (350)
                      ++-.
T Consensus       309 ~si~  312 (405)
T KOG1273|consen  309 ASIA  312 (405)
T ss_pred             eecc
Confidence            8653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=3.1e-13  Score=109.90  Aligned_cols=191  Identities=19%  Similarity=0.227  Sum_probs=141.2

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|..|...|..|+.|| .++|..+.                           .............|....|++   .++|
T Consensus        12 ~~Nqd~~~lsvGs~~G-yk~~~~~~---------------------------~~k~~~~~~~~~~IvEmLFSS---SLva   60 (391)
T KOG2110|consen   12 GFNQDSTLLSVGSKDG-YKIFSCSP---------------------------FEKCFSKDTEGVSIVEMLFSS---SLVA   60 (391)
T ss_pred             eeccceeEEEccCCCc-eeEEecCc---------------------------hHHhhcccCCCeEEEEeeccc---ceeE
Confidence            4778888899999988 67787762                           111222223334555666643   5666


Q ss_pred             EEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           82 SSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ..+.+..  +++.++..+..+..+..+.+|.++.++.  +.|+++-. ..|+|||++..++.+...       ....+..
T Consensus        61 iV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~-------t~~~n~~  130 (391)
T KOG2110|consen   61 IVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIE-------TTPPNPK  130 (391)
T ss_pred             EEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhh-------ccCCCcc
Confidence            6665544  9999999999999999999999999964  45555543 449999999776554321       2334566


Q ss_pred             ceEEEEecCCe--EEE--EeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCcccc
Q 045370          160 SITALAFSASH--LIS--ASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEK  233 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (350)
                      .+.++.+++.+  ++-  ....|.|.|||+.+.+.+..+..|.+++.+++|+++|.+||++|..+.++++...+.-.+
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            67777777765  332  234689999999999999999999999999999999999999999999999987755443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.59  E-value=6.2e-14  Score=122.44  Aligned_cols=184  Identities=17%  Similarity=0.146  Sum_probs=128.4

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cEEEEEeCC
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TFFVSSSLD   86 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d   86 (350)
                      .++.| ....|.+||..                           .......+.+|..+|+|+.|.|...  .++++|+.|
T Consensus        27 ~vafG-a~~~Iav~dp~---------------------------k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD   78 (764)
T KOG1063|consen   27 LVAFG-AGPAIAVADPE---------------------------KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSD   78 (764)
T ss_pred             eEEec-CCceEEEeCcc---------------------------cceeEEeccCCccceEEEEEcccccccceEEEccCC
Confidence            34444 55789999877                           3445677899999999999986432  379999999


Q ss_pred             CcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc-----------------------c
Q 045370           87 ATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE-----------------------D  142 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------~  142 (350)
                      +.|.+|.++..........+ ....+++++.......+.+.|+.+.+||....+..                       .
T Consensus        79 ~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~  158 (764)
T KOG1063|consen   79 GRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNK  158 (764)
T ss_pred             CcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCC
Confidence            99999999965544443322 35666666654444444478999999998443300                       0


Q ss_pred             c-----------------cccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCCce-----------
Q 045370          143 H-----------------FIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTRRV-----------  189 (350)
Q Consensus       143 ~-----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~-----------  189 (350)
                      .                 ....-..+..+.+|.+.|.+++|..-+     |+++|.|..||||.+.-+.           
T Consensus       159 ~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~  238 (764)
T KOG1063|consen  159 TFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL  238 (764)
T ss_pred             cEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc
Confidence            0                 000113445788999999999997533     9999999999999764221           


Q ss_pred             ----------EEEE----------eccCCCceeEEEEEccCCeEEeeecCc
Q 045370          190 ----------SIRR----------FNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       190 ----------~~~~----------~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                                ....          +.+|...|.++.|+|.+..|++++.|.
T Consensus       239 t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk  289 (764)
T KOG1063|consen  239 TTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK  289 (764)
T ss_pred             ccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc
Confidence                      1111          237999999999999998777787774

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=7.7e-14  Score=110.73  Aligned_cols=157  Identities=16%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc--e--EEE-EecCCceeEEEEcC--CCcEEEEEccCCeEEEE
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI--L--IQT-QVYPQAVTAIAFHP--GEQLLFAGSIDGRIFVS  133 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~--~--~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~  133 (350)
                      .+|.+-|.++.|.. .|..+++|+.|++|+|||.+...  .  ... -.|.+.|..+.|.+  -|+.+++++.|+++.||
T Consensus        10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            57889999999966 67889999999999999975433  2  222 34889999999976  58899999999999999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCC------ceEEEEec-------c
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTR------RVSIRRFN-------H  196 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~------~~~~~~~~-------~  196 (350)
                      .-....... ....-.....+......|+++.|.|..    |++++.||.||||+.-.      ..+..++.       .
T Consensus        89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            864221111 001112333566778899999999976    99999999999998654      33344443       3


Q ss_pred             CCCceeEEEEEcc---CCeEEeeecC
Q 045370          197 KKGVVTNLVVIRQ---SSLLSEVSNC  219 (350)
Q Consensus       197 ~~~~v~~l~~~~~---~~~l~~~~~~  219 (350)
                      +..+-.|+.|+|.   .++|++|+.+
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e  193 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDE  193 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEccc
Confidence            5667889999985   4678877765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=6.9e-14  Score=118.84  Aligned_cols=135  Identities=21%  Similarity=0.305  Sum_probs=112.9

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC--------------CceEEE---------------EecCCceeEEEE
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS--------------GILIQT---------------QVYPQAVTAIAF  114 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--------------~~~~~~---------------~~~~~~v~~~~~  114 (350)
                      ...|+++.|.+.+...++.+-.+|.+.++|...              +.....               .-..+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            478999999998888899999999999997531              111110               012347889999


Q ss_pred             cCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEE
Q 045370          115 HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIR  192 (350)
Q Consensus       115 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~  192 (350)
                      +|||++|++.+.||.++|||..+.++.          ..++..-+...|++|+|||  +++|++|.-|.||.+..++++.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLl----------g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELL----------GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHH----------HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            999999999999999999999865433          2455566889999999999  9999999999999999999999


Q ss_pred             EeccCCCceeEEEEEc
Q 045370          193 RFNHKKGVVTNLVVIR  208 (350)
Q Consensus       193 ~~~~~~~~v~~l~~~~  208 (350)
                      .-.+|...|+.|+|.|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            9999999999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.59  E-value=3.2e-14  Score=124.16  Aligned_cols=175  Identities=18%  Similarity=0.187  Sum_probs=132.0

Q ss_pred             CeecCCCCEEEEEeCC-----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDD-----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++.||+|+++||++..     -.|++|+..                           .-.....+.+|.-.|+.++|+| 
T Consensus       531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~---------------------------~W~~~~~L~~HsLTVT~l~FSp-  582 (764)
T KOG1063|consen  531 LAISPTGNLIASACKSSLKEHAVIRLWNTA---------------------------NWLQVQELEGHSLTVTRLAFSP-  582 (764)
T ss_pred             EEecCCCCEEeehhhhCCccceEEEEEecc---------------------------chhhhheecccceEEEEEEECC-
Confidence            4678999999999864     468999987                           3455567899999999999966 


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEE-----EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQ-----TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      ++.+|++.+.|+++.+|.........     .-.|..-|.++.|+|++.+|+++|.|..|++|.........     ...
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~-----i~~  657 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY-----ISR  657 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh-----hhh
Confidence            78999999999999999986432211     23488889999999999999999999999999987542110     000


Q ss_pred             ceeeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCC-------ce--EEEE---eccCCCceeEEEEEcc
Q 045370          151 HSVLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTR-------RV--SIRR---FNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~-------~~--~~~~---~~~~~~~v~~l~~~~~  209 (350)
                      . ....+...|+++++.|-.       ++.|-+.|.|.+|....       +.  ....   ...|...|..+.|.|.
T Consensus       658 ~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  658 F-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             h-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            0 234577899999988632       68888999999998541       11  1111   1246778999999976

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.9e-14  Score=114.63  Aligned_cols=155  Identities=20%  Similarity=0.281  Sum_probs=111.5

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcEEEEEe-
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTFFVSSS-   84 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~-   84 (350)
                      ...+.+|+.||+|++||++...                         ......+.++. .+..+++- ......+++|. 
T Consensus        84 ~h~v~s~ssDG~Vr~wD~Rs~~-------------------------e~a~~~~~~~~~~~f~~ld~-nck~~ii~~GtE  137 (376)
T KOG1188|consen   84 PHGVISCSSDGTVRLWDIRSQA-------------------------ESARISWTQQSGTPFICLDL-NCKKNIIACGTE  137 (376)
T ss_pred             CCeeEEeccCCeEEEEEeecch-------------------------hhhheeccCCCCCcceEeec-cCcCCeEEeccc
Confidence            4568899999999999998311                         12222334444 34444443 22456666664 


Q ss_pred             ---CCCcEEEEeCCCCce-EEEE--ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           85 ---LDATCKVWDLGSGIL-IQTQ--VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        85 ---~d~~v~vwd~~~~~~-~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                         .|-.|.+||++..+. +..+  .|.+.|++++|+| +.++|++|+.||.|.+||+.....       ...+...-.|
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-------eDaL~~viN~  210 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-------EDALLHVINH  210 (376)
T ss_pred             cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-------hhhHHHhhcc
Confidence               366799999998766 4443  4899999999999 567999999999999999986532       2222233457


Q ss_pred             CCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEe
Q 045370          158 NGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                      ...|.++.|..++   +.+-+..+...+|+++.+.....+
T Consensus       211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            7889999999877   888899999999999887654443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1.1e-13  Score=126.34  Aligned_cols=190  Identities=20%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      |..++++|+.||.|+||+-....-...           ++.....    .+-....+-.+.-.-+.|-...|.++ ++|.
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~-----------eLVTaw~----~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd 1185 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKP-----------ELVTAWS----SLSDQLPGARGTGLVVDWQQQSGHLL-VTGD 1185 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCc-----------eeEEeec----cccccCccCCCCCeeeehhhhCCeEE-ecCC
Confidence            446899999999999997542110000           0000000    00000011111113345655555544 4555


Q ss_pred             CCcEEEEeCCCCceEEEEec--CCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc--
Q 045370           86 DATCKVWDLGSGILIQTQVY--PQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS--  160 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  160 (350)
                      -..|+|||.....+...+..  ...++++.-+. .|+.|++|..||.|++||.+...       ....+...+.|...  
T Consensus      1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------PDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------ccccceeecccCCccc
Confidence            88999999999988888653  34566665543 46899999999999999999543       22345567778777  


Q ss_pred             eEEEEecCCe---EEEEeCCCcEEEEECCCceEEE--EeccCC--C-ceeEEEEEccCCeEEeeec
Q 045370          161 ITALAFSASH---LISASEDKTVCLWDVTRRVSIR--RFNHKK--G-VVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~--~~~~~~--~-~v~~l~~~~~~~~l~~~~~  218 (350)
                      |..+.+.+.|   |++|+.||.|++||++......  ++..|-  + .++++..+++...+|+|+.
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            9999999877   9999999999999999742222  222222  3 5999999999999998886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.56  E-value=1.5e-12  Score=115.83  Aligned_cols=191  Identities=31%  Similarity=0.439  Sum_probs=143.8

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc-
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT-   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-   78 (350)
                      ++|+|++.++++++. |+.+++|+..                           .......+.+|...|.++.|.+ ++. 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~  212 (466)
T COG2319         161 LAFSPDGKLLASGSSLDGTIKLWDLR---------------------------TGKPLSTLAGHTDPVSSLAFSP-DGGL  212 (466)
T ss_pred             EEECCCCCEEEecCCCCCceEEEEcC---------------------------CCceEEeeccCCCceEEEEEcC-Ccce
Confidence            479999999999886 9999999998                           3456666777999999999984 555 


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEE-EE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQ-TQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      .+++++.|+.|++||...+.... .+ .|.... ...|+|++..+++++.|+.+++|+.+....         ......+
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~  282 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---------LLRTLSG  282 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---------EEEEEec
Confidence            56666999999999998777776 33 355554 338999998889999999999999985432         1222357


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      |...+.++.|+|++  +++++.|+.+.+||..+........  .|...+..+.|.+++..++.+...+..+..|...
T Consensus       283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence            88999999999965  7778888899999999888777665  7777899999933324555553222433335443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=3.1e-12  Score=110.53  Aligned_cols=198  Identities=15%  Similarity=0.098  Sum_probs=121.4

Q ss_pred             CeecCCCCEEEEEe-CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+||+++|++++ .++.|.+|++....                        ....... ....+....+++++ ++++
T Consensus        40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g------------------------~l~~~~~-~~~~~~p~~i~~~~-~g~~   93 (330)
T PRK11028         40 MVISPDKRHLYVGVRPEFRVLSYRIADDG------------------------ALTFAAE-SPLPGSPTHISTDH-QGRF   93 (330)
T ss_pred             EEECCCCCEEEEEECCCCcEEEEEECCCC------------------------ceEEeee-ecCCCCceEEEECC-CCCE
Confidence            57899999887664 58899999886100                        0001111 11223456788866 5555


Q ss_pred             EEEEe-CCCcEEEEeCCC-Cc---eEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccccccccccee
Q 045370           80 FVSSS-LDATCKVWDLGS-GI---LIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        80 l~s~~-~d~~v~vwd~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +++++ .++.|.+|++.+ +.   .+..+.....+..++++|+++++++++ .++.|.+||+.........   ......
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~---~~~~~~  170 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ---EPAEVT  170 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc---CCCcee
Confidence            55554 588999999974 32   223233444578889999999886655 5699999999752211100   000001


Q ss_pred             eeccCCceEEEEecCCe--EEEEeC-CCcEEEEECCC--c--eEEEEeccC------CCceeEEEEEccCCeEEeeecCc
Q 045370          154 LKGHNGSITALAFSASH--LISASE-DKTVCLWDVTR--R--VSIRRFNHK------KGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~-dg~v~iwd~~~--~--~~~~~~~~~------~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      . ........+.|+|++  +++++. ++.|.+||+..  +  +.+..+..+      ......+.++|++++++++....
T Consensus       171 ~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~  249 (330)
T PRK11028        171 T-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA  249 (330)
T ss_pred             c-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence            1 112346789999998  656655 89999999973  3  334444321      11234688999999999876655


Q ss_pred             cccccccC
Q 045370          221 RKLKKDRM  228 (350)
Q Consensus       221 ~~~~~~~~  228 (350)
                      ..+.++++
T Consensus       250 ~~I~v~~i  257 (330)
T PRK11028        250 SLISVFSV  257 (330)
T ss_pred             CeEEEEEE
Confidence            55555533

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=4.3e-13  Score=120.32  Aligned_cols=187  Identities=25%  Similarity=0.375  Sum_probs=148.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC--cE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT--TF   79 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~   79 (350)
                      .||+|+++++... +..|.||...                           ++.++..+.+|..++..+.+.+...  .+
T Consensus        23 vfSnD~k~l~~~~-~~~V~VyS~~---------------------------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~   74 (792)
T KOG1963|consen   23 VFSNDAKFLFLCT-GNFVKVYSTA---------------------------TGECITSLEDHTAPLTSVIVLPSSENANY   74 (792)
T ss_pred             ccccCCcEEEEee-CCEEEEEecc---------------------------hHhhhhhcccccCccceeeecCCCccceE
Confidence            5899999888665 5789999998                           5777788899999999999987665  56


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-------------------------------------------------------
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-------------------------------------------------------  104 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-------------------------------------------------------  104 (350)
                      +++++.||.|++||...+..+..+.                                                       
T Consensus        75 ~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~  154 (792)
T KOG1963|consen   75 LIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG  154 (792)
T ss_pred             EEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch
Confidence            7799999999999986554433321                                                       


Q ss_pred             -------------------------------------------------cCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370          105 -------------------------------------------------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus       105 -------------------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                                                                       |.-.+++.+++|+++++++|..||.|.+|.-
T Consensus       155 d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d  234 (792)
T KOG1963|consen  155 DFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD  234 (792)
T ss_pred             hhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence                                                             0024688999999999999999999999964


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      -...      ........++-|...|+++.|+++|  |++|+..|.+-+|.+.+++ -.-++.-.++|..+.++||+.+.
T Consensus       235 ~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~  307 (792)
T KOG1963|consen  235 FGSS------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLY  307 (792)
T ss_pred             cccc------cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeE
Confidence            3210      1233344788899999999999999  9999999999999999988 33345567899999999999988


Q ss_pred             EeeecCcccc
Q 045370          214 SEVSNCQRKL  223 (350)
Q Consensus       214 ~~~~~~~~~~  223 (350)
                      +....|..+.
T Consensus       308 sl~~~DNqI~  317 (792)
T KOG1963|consen  308 SLVLEDNQIH  317 (792)
T ss_pred             EEEecCceEE
Confidence            8777775433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.4e-13  Score=119.49  Aligned_cols=177  Identities=16%  Similarity=0.062  Sum_probs=114.7

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .+|||||++|+.++.+   ..|++||+.++                         ....+....+|   ...++|+| ++
T Consensus       209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-------------------------~~~~l~~~~g~---~~~~~wSP-DG  259 (429)
T PRK01742        209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSG-------------------------ARKVVASFRGH---NGAPAFSP-DG  259 (429)
T ss_pred             ceEcCCCCEEEEEEecCCCcEEEEEeCCCC-------------------------ceEEEecCCCc---cCceeECC-CC
Confidence            4799999999988754   36999998731                         01122222333   33567866 66


Q ss_pred             cEEEEE-eCCCcEEEE--eCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccccccccccee
Q 045370           78 TFFVSS-SLDATCKVW--DLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        78 ~~l~s~-~~d~~v~vw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +.|+.+ +.+|.+.||  |+.++.......+...+....|+|+|+.|+.++ .+|...+|++.....         ....
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---------~~~~  330 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---------GASL  330 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------CeEE
Confidence            666654 568876655  666676655555666788999999999776554 578888887653211         1111


Q ss_pred             eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      + .+..  ....|+|++  ++.++.+ .+.+||+.+++.......+  ...++.|+|+|++|+.++.++.
T Consensus       331 l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        331 V-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             e-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence            2 2332  457899998  6666655 4667999988754322222  3456789999999998876643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=4.6e-14  Score=120.48  Aligned_cols=169  Identities=22%  Similarity=0.257  Sum_probs=129.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +++++++..+++|+.||+|+.|++.....+.                 +..........+.+|++.|+.+++++ ....|
T Consensus       350 v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~L  411 (577)
T KOG0642|consen  350 VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD-----------------DSYDPSVLSGTLLGHTDAVWLLALSS-TKDRL  411 (577)
T ss_pred             EEecCCceEEEeeccCceeeeeccCCCCCcc-----------------cccCcchhccceeccccceeeeeecc-cccce
Confidence            3567899999999999999999876211000                 01112345567899999999999976 55679


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-------------------c----------------------------------CC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-------------------Y----------------------------------PQ  107 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-------------------~----------------------------------~~  107 (350)
                      ++++.||+|+.|+...... ..+.                   |                                  ..
T Consensus       412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence            9999999999999765433 0000                   0                                  02


Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      .+.-+.++|.+...+++..|+.|+++|..++          ..+.....|...++++++.|+|  |++++.|+.+++|.+
T Consensus       491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  491 QINKVVSHPTADITFTAHEDRSIRFFDNKTG----------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ccceEEecCCCCeeEecccCCceeccccccc----------ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            4667888999999999999999999999854          4444777899999999999999  999999999999999


Q ss_pred             CCceEEEEeccCC
Q 045370          186 TRRVSIRRFNHKK  198 (350)
Q Consensus       186 ~~~~~~~~~~~~~  198 (350)
                      ....++.....|.
T Consensus       561 d~k~~~~es~~~r  573 (577)
T KOG0642|consen  561 DVKTCVLESTAHR  573 (577)
T ss_pred             cchheeecccccc
Confidence            8777776665553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=3.9e-14  Score=121.80  Aligned_cols=182  Identities=16%  Similarity=0.249  Sum_probs=143.2

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      |.|+..|.||++...+   ..|.|.++..                           .....-+....+.|.++.|+|.. 
T Consensus       527 vtWHrkGDYlatV~~~~~~~~VliHQLSK---------------------------~~sQ~PF~kskG~vq~v~FHPs~-  578 (733)
T KOG0650|consen  527 VTWHRKGDYLATVMPDSGNKSVLIHQLSK---------------------------RKSQSPFRKSKGLVQRVKFHPSK-  578 (733)
T ss_pred             eeeecCCceEEEeccCCCcceEEEEeccc---------------------------ccccCchhhcCCceeEEEecCCC-
Confidence            5799999999987764   4678888772                           22233344566788899997754 


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      .+|+.++ ...|++||+....++.. +.....|..++.+|.|..|+.|+.|+.+..||+.-         ..++...+..
T Consensus       579 p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl---------sskPyk~lr~  648 (733)
T KOG0650|consen  579 PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL---------SSKPYKTLRL  648 (733)
T ss_pred             ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc---------CcchhHHhhh
Confidence            4555555 47899999998766665 44567899999999999999999999999999983         5566778889


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECC------C---ceEEEEeccCCCc----eeEEEEEccCCeEEeeecCc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVT------R---RVSIRRFNHKKGV----VTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~------~---~~~~~~~~~~~~~----v~~l~~~~~~~~l~~~~~~~  220 (350)
                      |...+++++|++..  +++|+.||++.||--.      .   --+++.+.+|...    |..+.|+|...+|++++.++
T Consensus       649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence            99999999999998  8889999999998422      2   1346667777654    88899999999999888875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.3e-14  Score=122.03  Aligned_cols=162  Identities=18%  Similarity=0.134  Sum_probs=128.4

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC--CCcEEEEEccCCeEEE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP--GEQLLFAGSIDGRIFV  132 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i  132 (350)
                      ...+.+|++-|.++.|+. +|.+|++|+.|-.+.|||.-..+.++.+  +|...|.++.|-|  +...+++|+.|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            346789999999999966 7899999999999999999988888875  5889999999999  5678899999999999


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEE----------EeccCCC
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIR----------RFNHKKG  199 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~  199 (350)
                      +|+...+..............+..|...|..++..|++   +.++++||+|+-+|++......          .+....-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99986544333333445566778899999999999888   9999999999999998733211          1111223


Q ss_pred             ceeEEEEEccCC-eEEeeecC
Q 045370          200 VVTNLVVIRQSS-LLSEVSNC  219 (350)
Q Consensus       200 ~v~~l~~~~~~~-~l~~~~~~  219 (350)
                      ...++..+|... +|++|+.+
T Consensus       202 elk~ltisp~rp~~laVGgsd  222 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSD  222 (758)
T ss_pred             eeeeeeecCCCCceEEecCCC
Confidence            578899999875 56656655

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=8.8e-14  Score=118.21  Aligned_cols=153  Identities=12%  Similarity=0.189  Sum_probs=106.4

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEe---eccccccceeeeccccCCceEEEEeeCCC
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEM---ELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .|-|.+ ..++.+-.+|.+.+||.+..... . .+.......+..+..   .......++..+.-..+.|...+|++ ++
T Consensus       226 kWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-t-~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG  302 (636)
T KOG2394|consen  226 KWVPGSDSLFLVAHASGNLYLYDKEIVCGA-T-APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DG  302 (636)
T ss_pred             EEEeCCCceEEEEEecCceEEeeccccccC-C-CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CC
Confidence            455533 46667778999999987421100 0 000111111111111   11222244445555566999999977 89


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      .+||+.+.||.++|+|..+..++..++ .-+...|++|+|||++|++|++|..|.||.+..          .+.+..-++
T Consensus       303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----------rRVVARGqG  372 (636)
T KOG2394|consen  303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----------RRVVARGQG  372 (636)
T ss_pred             ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----------ceEEEeccc
Confidence            999999999999999999887766643 457899999999999999999999999999883          344446678


Q ss_pred             cCCceEEEEec
Q 045370          157 HNGSITALAFS  167 (350)
Q Consensus       157 ~~~~i~~~~~~  167 (350)
                      |..+|..++|.
T Consensus       373 HkSWVs~VaFD  383 (636)
T KOG2394|consen  373 HKSWVSVVAFD  383 (636)
T ss_pred             cccceeeEeec
Confidence            99999999987

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=107.50  Aligned_cols=190  Identities=16%  Similarity=0.178  Sum_probs=129.0

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~   81 (350)
                      |..++ +|.+|..-|.|++|++.                           +......+. .|...|+.+...+.  ..+.
T Consensus        22 fqa~~-rL~sg~~~G~V~~w~lq---------------------------t~r~~~~~r~~g~~~it~lq~~p~--d~l~   71 (323)
T KOG0322|consen   22 FQANE-RLMSGLSVGIVKMWVLQ---------------------------TERDLPLIRLFGRLFITNLQSIPN--DSLD   71 (323)
T ss_pred             hccch-hhhcccccceEEEEEee---------------------------cCccchhhhhhccceeeceeecCC--cchh
Confidence            44444 58899999999999998                           344444444 66777887776553  3477


Q ss_pred             EEeCCCcEEEEeCCCCceEEE--------------Ee----------------------------------------cCC
Q 045370           82 SSSLDATCKVWDLGSGILIQT--------------QV----------------------------------------YPQ  107 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~--------------~~----------------------------------------~~~  107 (350)
                      +-+.|+.+.+|++.-+..+..              +.                                        ..+
T Consensus        72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg  151 (323)
T KOG0322|consen   72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG  151 (323)
T ss_pred             hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence            888888888888764221110              00                                        002


Q ss_pred             ceeEEEEcC-CCc--EEEEEccCCeEEEEeCCccc----------cccccccccccc-----------------------
Q 045370          108 AVTAIAFHP-GEQ--LLFAGSIDGRIFVSPLKFLL----------LEDHFIVGEDQH-----------------------  151 (350)
Q Consensus       108 ~v~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~~-----------------------  151 (350)
                      .+.|..+.. .+.  ++++|-++|.+.+||+..+.          .........+++                       
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~  231 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM  231 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence            344444332 222  46678889999999998852          000000000000                       


Q ss_pred             -------------eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          152 -------------SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       152 -------------~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                                   ....-....|..+..-||+  +|+++.|+.||||..++.+++..+.-|.+.|.+++|+|+..+++++
T Consensus       232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa  311 (323)
T KOG0322|consen  232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA  311 (323)
T ss_pred             eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence                         0111223457778888888  9999999999999999999999999999999999999999999988


Q ss_pred             ecCccc
Q 045370          217 SNCQRK  222 (350)
Q Consensus       217 ~~~~~~  222 (350)
                      +.|.++
T Consensus       312 skD~rI  317 (323)
T KOG0322|consen  312 SKDARI  317 (323)
T ss_pred             cCCceE
Confidence            887653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=5e-13  Score=115.04  Aligned_cols=201  Identities=12%  Similarity=0.074  Sum_probs=146.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccc--cEEEeeccccccceeeeccccCCceEEEE---eeCCCc
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQ--RLIEMELRSLRSLLHYSLEHKSSVTGLLT---ISGGTT   78 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~   78 (350)
                      +|-+.|+|....||.+++||...+.......+.......+  ..|.+......          -...++.+   -+.+..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~----------~k~~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSP----------MKWLSLEKAKKASLDTS   71 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccch----------HHHHhHHHHhhccCCce
Confidence            4566899999999999999998655444333322211111  11111000000          00000000   123456


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      .++-|...|.|.+|++..|+....+.   |.+.|.++.++.+-..|.+++.|+.+..|+...          ...++.+.
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~----------~~~~~~~~  141 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE----------KVIIRIWK  141 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc----------ceeeeeec
Confidence            78889999999999999999888764   889999999999999999999999999999984          33444667


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc-----CCeEEeeecCccccccc
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ-----SSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~~~~~~~~~~~~  226 (350)
                      .....+.+++++|++  +++++  +.|.+||+.+++.+..|.+|.++|+++.|..+     |.+++++..-.+.+..|
T Consensus       142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            777889999999998  66664  58999999999999999999999999999987     78888666655555555

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=6.3e-13  Score=114.81  Aligned_cols=198  Identities=11%  Similarity=0.090  Sum_probs=123.6

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|+|++|++++. ++.|.+|+++....                       ........ .+.....+++++|.+..+
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----------------------~~~~~~~~-~~~~~~~~~~~~p~g~~l  140 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGI-----------------------PVAPIQII-EGLEGCHSANIDPDNRTL  140 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCC-----------------------CCCceeec-cCCCcccEeEeCCCCCEE
Confidence            578999998888775 88999999862100                       00111111 222345667776644444


Q ss_pred             EEEEeCCCcEEEEeCCCCceEE-------EEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCcc--ccccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQ-------TQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFL--LLEDHFIVGED  149 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~~~~~  149 (350)
                      +++...++.|.+||+.+...+.       ..........+.|+|++++++++.. ++.|.+|++...  ........   
T Consensus       141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~---  217 (330)
T PRK11028        141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL---  217 (330)
T ss_pred             EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE---
Confidence            4566677999999998633221       1223445778999999999988876 899999999732  11100000   


Q ss_pred             cceeee---ccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCce----EEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          150 QHSVLK---GHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       150 ~~~~~~---~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                        ....   .+......+.++|++  ++++. .++.|.+|++....    .+..+.. ......+.|+|+|++|++++..
T Consensus       218 --~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        218 --DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             --ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEcc
Confidence              0111   112234568899998  66654 47899999985432    2333332 2345688999999999988765


Q ss_pred             ccccccccC
Q 045370          220 QRKLKKDRM  228 (350)
Q Consensus       220 ~~~~~~~~~  228 (350)
                      ...+.++.+
T Consensus       295 ~~~v~v~~~  303 (330)
T PRK11028        295 SHHISVYEI  303 (330)
T ss_pred             CCcEEEEEE
Confidence            555555543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1e-13  Score=126.47  Aligned_cols=187  Identities=16%  Similarity=0.201  Sum_probs=130.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +|.....+|+++|.-..|+|||...                           ......+ .+....|+++.....+++.+
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~---------------------------E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHK---------------------------EQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEeccc---------------------------ceeEeecccCCCccceeecccccCCceE
Confidence            5666666777777789999999983                           2222222 33456677777777778999


Q ss_pred             EEEeCCCcEEEEeCCCCce---EEE-EecCCc--eeEEEEcCCCc-EEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           81 VSSSLDATCKVWDLGSGIL---IQT-QVYPQA--VTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~---~~~-~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +.|..||.|++||.+....   +.. -.|...  |..+.+.+.|- .|++|+.||.|++||++......        ...
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--------~~~ 1296 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--------FLT 1296 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc--------cce
Confidence            9999999999999886432   222 235555  99999998765 59999999999999999632111        112


Q ss_pred             eecc---CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-------cCCCceeEEEEEccCCeEEeeecCcc
Q 045370          154 LKGH---NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-------HKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       154 ~~~~---~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      +..|   .+..+++..++..  +|+|+. +.|.||++.. +.+..+.       ...+.+.|++|+|..-++++|+ .+.
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~-~Ds 1373 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS-ADS 1373 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc-CCc
Confidence            2222   2358999999988  777777 9999999874 3333222       1345789999999999999774 444


Q ss_pred             ccccc
Q 045370          222 KLKKD  226 (350)
Q Consensus       222 ~~~~~  226 (350)
                      .+.++
T Consensus      1374 ~V~iY 1378 (1387)
T KOG1517|consen 1374 TVSIY 1378 (1387)
T ss_pred             eEEEe
Confidence            44443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=4.2e-13  Score=108.93  Aligned_cols=186  Identities=13%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|++.-..+|++..|-+|++||-.                           ..............|.+++|-|.....|
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ks---------------------------st~pt~Lks~sQrnvtclawRPlsasel  156 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKS---------------------------STCPTKLKSVSQRNVTCLAWRPLSASEL  156 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccC---------------------------CCCCceecchhhcceeEEEeccCCccee
Confidence            4677766678899999999999876                           2122222233457899999988888888


Q ss_pred             EEEeCCCcEEEEeCCCC----ce--------EEEEe--cCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccc
Q 045370           81 VSSSLDATCKVWDLGSG----IL--------IQTQV--YPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~----~~--------~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~  145 (350)
                      +.|+..| |.+|.....    ..        ...+.  ...+|+++.|++||..+++++. |..|.+||..++...    
T Consensus       157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~----  231 (445)
T KOG2139|consen  157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI----  231 (445)
T ss_pred             eeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc----
Confidence            8888765 999986531    11        11122  2357999999999999999875 589999999865322    


Q ss_pred             cccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC-CceEEEEeccCCCceeEEEEEccCCeEEeee-cCcc
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT-RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS-NCQR  221 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~~~~  221 (350)
                            .......+.++-+.|+|++  |+++.-|+..++|... +....+-.. ..+.|...+|+|+|++|+-++ ...+
T Consensus       232 ------pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  232 ------PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             ------cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCce
Confidence                  1222344678899999999  8899999999999544 444433333 345899999999998665444 4444


Q ss_pred             cccc
Q 045370          222 KLKK  225 (350)
Q Consensus       222 ~~~~  225 (350)
                      +..+
T Consensus       305 lysl  308 (445)
T KOG2139|consen  305 LYSL  308 (445)
T ss_pred             EEEE
Confidence            4444

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=1.8e-12  Score=103.55  Aligned_cols=188  Identities=13%  Similarity=0.214  Sum_probs=119.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+.|...++.|..+| .+||+.+........                         ......-.+..+.|-   .+++
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r-------------------------~~~~~G~~~veMLfR---~N~l   61 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-------------------------QFIDGGFKIVEMLFR---SNYL   61 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhh-------------------------ccccCchhhhhHhhh---hceE
Confidence            47899999999887666 899998831111100                         000111222222231   1222


Q ss_pred             E-EEeCC------CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc-ccccc---------
Q 045370           81 V-SSSLD------ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL-LLEDH---------  143 (350)
Q Consensus        81 ~-s~~~d------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~---------  143 (350)
                      + .||.+      ..|.|||=....++..+....+|.++.+.++  .|++.- .+.|++|..... +....         
T Consensus        62 aLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG  138 (346)
T KOG2111|consen   62 ALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG  138 (346)
T ss_pred             EEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc
Confidence            2 33322      3577888666667777777777777777543  333332 456666665421 10000         


Q ss_pred             --------------------------cccccc--cceeeeccCCceEEEEecCCe--EEEEeCCCc-EEEEECCCceEEE
Q 045370          144 --------------------------FIVGED--QHSVLKGHNGSITALAFSASH--LISASEDKT-VCLWDVTRRVSIR  192 (350)
Q Consensus       144 --------------------------~~~~~~--~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~-v~iwd~~~~~~~~  192 (350)
                                                ......  ....+.+|...|.|++.+-+|  +||+|..|+ |||||..+|..+.
T Consensus       139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~  218 (346)
T KOG2111|consen  139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ  218 (346)
T ss_pred             eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence                                      000001  224678899999999999999  999999987 7999999999999


Q ss_pred             Eecc--CCCceeEEEEEccCCeEEeeecCc
Q 045370          193 RFNH--KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       193 ~~~~--~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ++..  ....|.+++|||+..+|+++|..+
T Consensus       219 E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  219 ELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             eeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            9863  345799999999999999777654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1.5e-12  Score=102.54  Aligned_cols=117  Identities=17%  Similarity=0.265  Sum_probs=84.4

Q ss_pred             ccCCceEEEEeeCCCcEEE-EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCCcc
Q 045370           63 HKSSVTGLLTISGGTTFFV-SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFL  138 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  138 (350)
                      ..++|.+++|+|.+..+++ .|..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.   .|.|.+||.+..
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4557999999875444433 34467899999997 55565554 467889999999999999864   467999999843


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEe
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~  194 (350)
                      +..          ...  +...++.++|+|+|  ++++..      |..++||+.. |+.+...
T Consensus       136 ~~i----------~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  136 KKI----------STF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEe----------ecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            322          122  22357899999999  666553      7889999985 6666554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.6e-12  Score=100.19  Aligned_cols=165  Identities=14%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ...|..+-++.++.|+.++-||++                           .+...+.+.+|++.|.+++--.. ...++
T Consensus       121 ~ldP~enSi~~AgGD~~~y~~dlE---------------------------~G~i~r~~rGHtDYvH~vv~R~~-~~qil  172 (325)
T KOG0649|consen  121 WLDPSENSILFAGGDGVIYQVDLE---------------------------DGRIQREYRGHTDYVHSVVGRNA-NGQIL  172 (325)
T ss_pred             EeccCCCcEEEecCCeEEEEEEec---------------------------CCEEEEEEcCCcceeeeeeeccc-Cccee
Confidence            356766667777799999999999                           68889999999999999987443 34589


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe---cC--------CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV---YP--------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~---~~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      +|+.||++++||.++++.+..+.   ++        ..|.+++.  +..++++|+ ...+.+|.++..+...        
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~--------  241 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTC--------  241 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceE--------
Confidence            99999999999999999888754   22        22444444  566887776 5679999999644322        


Q ss_pred             ceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          151 HSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                        .+ ..+.++..+.|..+.++++++.+.|.-|.+. |..-..+.......++..|+..
T Consensus       242 --vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~  296 (325)
T KOG0649|consen  242 --VF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTS  296 (325)
T ss_pred             --EE-ecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCC
Confidence              22 3446788889998888888988899999875 4444444433344555555544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=2.6e-12  Score=114.34  Aligned_cols=186  Identities=30%  Similarity=0.428  Sum_probs=142.1

Q ss_pred             cCCCC-EEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            4 SDDGF-LLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         4 s~dg~-~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ++++. +++..+. |+.+.+|+...                          .......+..|...|..+.|.+ ++..++
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  171 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST--------------------------PGKLIRTLEGHSESVTSLAFSP-DGKLLA  171 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC--------------------------CCeEEEEEecCcccEEEEEECC-CCCEEE
Confidence            56776 5555444 99999999881                          1466677889999999999977 455777


Q ss_pred             EEeC-CCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccce-eeecc
Q 045370           82 SSSL-DATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS-VLKGH  157 (350)
Q Consensus        82 s~~~-d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~  157 (350)
                      +++. |+.+++|++..+..+..+. |...+.+++|+|++. .+++++.|+.|.+||...+.          ... .+.+|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----------~~~~~~~~~  241 (466)
T COG2319         172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----------LLRSTLSGH  241 (466)
T ss_pred             ecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----------EEeeecCCC
Confidence            7775 9999999999877777655 788999999999998 55555899999999777322          222 45667


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceE-EEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVS-IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .... ...|+|++  +++++.|+.+++||+..... +..+..|...+.++.|+|++..+++++.+ ..+..|+.
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~~~~~~~  313 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLWDL  313 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-CcEEEEEc
Confidence            6664 33888887  77899999999999987654 44446678899999999988888887777 44555533

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.52  E-value=1.4e-12  Score=113.97  Aligned_cols=207  Identities=11%  Similarity=0.136  Sum_probs=137.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc-------cccccccEEEeecccc---ccceeeec--cccCCce
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH-------SDQLDQRLIEMELRSL---RSLLHYSL--EHKSSVT   68 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~--~h~~~v~   68 (350)
                      ++||.||+++|+|+.|..|.+|+-.-.+..  ...+.       ..+....+........   ...-....  .....+.
T Consensus        59 VAys~dGkrFASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~  136 (1081)
T KOG1538|consen   59 VAYAKDGKRFASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII  136 (1081)
T ss_pred             EEEccCCceeccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence            589999999999999999999986521110  00000       0011111111000000   00000111  2345677


Q ss_pred             EEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCC-----cEEEEEccCCeEEEEeCCcccc
Q 045370           69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGE-----QLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        69 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      +++|.. +|.+++.|-.+|+|.+-+-........-.   ...+|.+++|+|..     ..+++.....++.+|.+.....
T Consensus       137 ~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I  215 (1081)
T KOG1538|consen  137 CCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI  215 (1081)
T ss_pred             EeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence            888854 88999999999999998754333333322   45689999999953     4678888888888887763221


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .           .-..-.-...|+.+.++|  ++.|+.|+.+++| .+.|-.+.++......|+.++..|+++.++.|+.
T Consensus       216 g-----------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  216 G-----------KDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             c-----------ccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence            1           111222345689999999  8889999999999 5668888888777889999999999999999998


Q ss_pred             Cccc
Q 045370          219 CQRK  222 (350)
Q Consensus       219 ~~~~  222 (350)
                      |+.+
T Consensus       284 DGTi  287 (1081)
T KOG1538|consen  284 DGTI  287 (1081)
T ss_pred             cCee
Confidence            8754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=107.15  Aligned_cols=149  Identities=25%  Similarity=0.362  Sum_probs=112.6

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT   88 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   88 (350)
                      +|+.|-++|.|.+||+......               +  +.....+.......|..+|.++.|.+. ...=++|+.+..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~---------------~--~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dk  228 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKI---------------I--QLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDK  228 (323)
T ss_pred             EEEEeccCCeEEEEEccCCcee---------------e--ccccccccccchhhccCcceeeeechh-hcCCcCCCcccc
Confidence            4667888999999999842111               0  111122444556789999999999753 333467888888


Q ss_pred             EEEEeCCCC--ceEEE--Ee-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEE
Q 045370           89 CKVWDLGSG--ILIQT--QV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA  163 (350)
Q Consensus        89 v~vwd~~~~--~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  163 (350)
                      +..|.++..  .+...  +. ....+..+..-||++.+++++.|+.|++|..+          ...+...++.|.+.|++
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr----------tl~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR----------TLNPLAVLKYHSAGVNA  298 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec----------cCCchhhhhhhhcceeE
Confidence            999988743  22211  22 23458889999999999999999999999999          45566688999999999


Q ss_pred             EEecCCe--EEEEeCCCcEEEEEC
Q 045370          164 LAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       164 ~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      ++|+|+.  +|+++.|++|.+|++
T Consensus       299 vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchhhhccCCceEEeeec
Confidence            9999995  999999999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.50  E-value=6.8e-13  Score=106.03  Aligned_cols=195  Identities=17%  Similarity=0.150  Sum_probs=146.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|..+.|++|+.|..-+||....                        ...-.+...+..++..++++.|.| ..+.|
T Consensus        61 vdWap~snrIvtcs~drnayVw~~~~------------------------~~~WkptlvLlRiNrAAt~V~WsP-~enkF  115 (361)
T KOG1523|consen   61 VDWAPKSNRIVTCSHDRNAYVWTQPS------------------------GGTWKPTLVLLRINRAATCVKWSP-KENKF  115 (361)
T ss_pred             EeecCCCCceeEccCCCCccccccCC------------------------CCeeccceeEEEeccceeeEeecC-cCceE
Confidence            57999999999999999999998731                        112344556678999999999977 56779


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-----EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc--------cccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-----QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--------FIVG  147 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~  147 (350)
                      ++|+..+.|.||-++...--..     .++...|.++.|+|++-++++|+.|+..++|..--......        ...-
T Consensus       116 AVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PF  195 (361)
T KOG1523|consen  116 AVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPF  195 (361)
T ss_pred             EeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence            9999999999999886553322     34667899999999999999999999999987543222211        1111


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +..+..+....+.+..+.|+|+|  |+-.+.|+.+.+-|..... .+..+....-|..++.|..+...+++|.++.
T Consensus       196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~  271 (361)
T KOG1523|consen  196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG  271 (361)
T ss_pred             HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence            22333444567899999999999  9999999999999988764 3444443347889999988888877665544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=2.7e-12  Score=105.28  Aligned_cols=189  Identities=12%  Similarity=0.108  Sum_probs=145.7

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC-
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD-   86 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-   86 (350)
                      ..|++|-.+|.+.+|....+...                       ...+..+.. ...+..+.-.+....++++|+.. 
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~  171 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKEN  171 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc-----------------------cccceeeec-CCceeeeccCCCCCceEecCchhc
Confidence            36778888999999988732111                       111122222 24455555556666788889999 


Q ss_pred             -CcEEEEeCCCCceEEEEe----------cCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           87 -ATCKVWDLGSGILIQTQV----------YPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        87 -~~v~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                       ..+++||+.+.+.+..-+          .+-.++++.|-+.  ...|++++.-+.+++||.+.         ...++..
T Consensus       172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---------qRRPV~~  242 (412)
T KOG3881|consen  172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH---------QRRPVAQ  242 (412)
T ss_pred             ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc---------cCcceeE
Confidence             889999999886665522          2335788999887  88999999999999999984         5667778


Q ss_pred             eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370          154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                      +..-..+++++...|++  +++|..-|.+..||++.+..+.. +.+..+.++++..+|.++++++++- ++.+++++...
T Consensus       243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt  321 (412)
T KOG3881|consen  243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT  321 (412)
T ss_pred             eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence            88888999999999998  99999999999999999998887 7888999999999999999996554 45666665544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=4.4e-12  Score=113.33  Aligned_cols=178  Identities=15%  Similarity=0.064  Sum_probs=114.9

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .+|||||+.|+..+.+   ..|.+||+.+                           +.. ..+..+.+...+..|+|.+.
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~---------------------------g~~-~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLAT---------------------------GQR-ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCC---------------------------CCE-EEeccCCCCccCceECCCCC
Confidence            3699999999987743   4699999872                           211 12222333445677866444


Q ss_pred             cEEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CCe--EEEEeCCccccccccccccccce
Q 045370           78 TFFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGR--IFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        78 ~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .++++.+.+|  .|.+||+.++.......+.......+|+|+|+.|+.++. +|.  |+++|+..+..           .
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-----------~  329 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-----------E  329 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-----------E
Confidence            4445666666  599999998876554455555678899999998877653 444  66666653321           1


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCC-C--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISASED-K--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+..+......++|+|++  ++..+.+ +  .|.+||+.+++.. .+. +........|+|+|++++..+..
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence            222233344568999999  5544333 2  6999999887754 343 22345677999999988866654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.49  E-value=8.8e-13  Score=117.51  Aligned_cols=192  Identities=14%  Similarity=0.078  Sum_probs=135.7

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      .-+++++.||.|+.|+++....+.......               ..............++++.|.+.+...|+.|+.+|
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~---------------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLE---------------SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccc---------------cccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            458899999999999887322211111000               00001111233457888999888889999999999


Q ss_pred             cEEEEeCC---CCc------eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           88 TCKVWDLG---SGI------LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        88 ~v~vwd~~---~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      .|..-+-.   ...      ......|.++|+++.++|=+..++..+.|..+++|.-..         ...++..+..+.
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---------~~~Pl~~~~~~~  441 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---------IASPLLSLDSSP  441 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---------CCCcchhhhhcc
Confidence            98773332   222      111234889999999999776666555599999998762         344455666777


Q ss_pred             CceEEEEecCCe---EEEEeCCCcEEEEECCC--ceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          159 GSITALAFSASH---LISASEDKTVCLWDVTR--RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ..+++++|||..   |+++..||.|.+||+..  ..++.+...+....+.+.|+++|++|++|...+.+.
T Consensus       442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence            889999999987   99999999999999975  345555555567788888999999999888777554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=6.6e-12  Score=111.74  Aligned_cols=178  Identities=13%  Similarity=0.026  Sum_probs=113.7

Q ss_pred             CeecCCCCEEEEEeC---CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD---DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .+|||||+.|+..+.   +..|.+|++.+                           +. ...+....+.+....|+| ++
T Consensus       204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~---------------------------G~-~~~l~~~~~~~~~~~~SP-DG  254 (429)
T PRK03629        204 PAWSPDGSKLAYVTFESGRSALVIQTLAN---------------------------GA-VRQVASFPRHNGAPAFSP-DG  254 (429)
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCC---------------------------CC-eEEccCCCCCcCCeEECC-CC
Confidence            379999999886543   45788888872                           21 111112223344577866 55


Q ss_pred             cEEE-EEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-CeEEEE--eCCccccccccccccccc
Q 045370           78 TFFV-SSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-GRIFVS--PLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        78 ~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~~  151 (350)
                      ..|+ +.+.+|  .|.+||+.++.......+...+....|+|+|+.|+..+.+ +...+|  |+..+.           .
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----------~  323 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----------P  323 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----------e
Confidence            5555 445555  4889999988776665555678899999999988766643 444444  554321           1


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeC-C--CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          152 SVLKGHNGSITALAFSASH--LISASE-D--KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+..+........|+|++  ++..+. +  ..|++||+.++... .+.. ........|+|||++|+.++.++
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCC
Confidence            1233334455678999998  554443 3  35889999887643 3332 12345678999999999887664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=3.6e-12  Score=100.31  Aligned_cols=117  Identities=14%  Similarity=0.245  Sum_probs=84.6

Q ss_pred             cEEEEeCCC-CceEEE--EecCCceeEEEEcCCCcEEEEE--ccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           88 TCKVWDLGS-GILIQT--QVYPQAVTAIAFHPGEQLLFAG--SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        88 ~v~vwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      ...+|.++. +.....  +...++|.+++|+|+|+.|++.  ..++.|.+||++.           ..  ...-+...++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----------~~--i~~~~~~~~n  104 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----------KK--IFSFGTQPRN  104 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----------cE--eEeecCCCce
Confidence            355555532 223333  3345679999999999987655  3567999999962           11  1222356788


Q ss_pred             EEEecCCe--EEEEeC---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          163 ALAFSASH--LISASE---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       163 ~~~~~~~~--l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+.|+|+|  +++++.   .|.|.+||.++.+.+.... | ..++.++|+|+|++|+++...
T Consensus       105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence            99999999  666653   4679999999999998876 3 347899999999999987754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=9e-12  Score=111.45  Aligned_cols=178  Identities=11%  Similarity=0.027  Sum_probs=117.9

Q ss_pred             CeecCCCCEEEEEeC---CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD---DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .+|||||+.|+..+.   +..|.+||+.+                           +. ...+..+.+.+....|+|.+.
T Consensus       207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------------g~-~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        207 PRFSPNRQEITYMSYANGRPRVYLLDLET---------------------------GQ-RELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEECCCCCEEEEEEecCCCCEEEEEECCC---------------------------Cc-EEEeecCCCcccCcEECCCCC
Confidence            369999999888764   46899999872                           22 222334555667778876444


Q ss_pred             cEEEEEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370           78 TFFVSSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        78 ~~l~s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .++++.+.++.  |.+||+.++.......+........|+|+|+.|+..+. +|  .|+++|+..+..           .
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----------~  327 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----------R  327 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----------E
Confidence            44556666665  77779888876655555566778999999998887663 33  677778663221           1


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCC---CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISASED---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+..+...+....|+|++  ++..+.+   ..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence            333334556778899999  5554432   3688899865543 3333 22356788999999988766543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.47  E-value=3.6e-12  Score=102.28  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=117.6

Q ss_pred             eccccCCceEEEEeeC----CCcEEEEEeCCCcEEEEeCCCCc---eEEEEe---cCCceeEEEEcCC----CcEEEEEc
Q 045370           60 SLEHKSSVTGLLTISG----GTTFFVSSSLDATCKVWDLGSGI---LIQTQV---YPQAVTAIAFHPG----EQLLFAGS  125 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~----~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~---~~~~v~~~~~~~~----~~~l~~~~  125 (350)
                      ...|+.+|.+++|++-    ....+++.+ ...+.+|......   .++...   ++.....++|+-+    ..++++|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            3578899999999742    235566666 4568888866432   333322   5566778888753    34788888


Q ss_pred             cCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec---cCCC
Q 045370          126 IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN---HKKG  199 (350)
Q Consensus       126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~  199 (350)
                      .-|.|++.|+.+..          ....+.+|...|+.+.++|..   ++++|.|..|++|++++..++..+.   +|..
T Consensus       113 ~~GvIrVid~~~~~----------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ----------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             ceeEEEEEecchhh----------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence            99999999998543          334788999999999999987   9999999999999999999998874   6889


Q ss_pred             ceeEEEEEccCCeEEeeecC
Q 045370          200 VVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       200 ~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .|.++.|+++|.++++++-|
T Consensus       183 eVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCc
Confidence            99999999999999977766

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=3e-12  Score=109.91  Aligned_cols=159  Identities=12%  Similarity=0.184  Sum_probs=122.7

Q ss_pred             cccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------cCC-----ceeEEEEcCCCcE
Q 045370           53 LRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-------YPQ-----AVTAIAFHPGEQL  120 (350)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------~~~-----~v~~~~~~~~~~~  120 (350)
                      .+..+..+....+.+++|..++. ..+|++|+.+|.|.+||.++......+.       +++     .|+++.|+.+|-.
T Consensus       164 qGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~  242 (703)
T KOG2321|consen  164 QGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH  242 (703)
T ss_pred             ccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee
Confidence            45566666667789999988764 4678899999999999999877666543       222     3999999999999


Q ss_pred             EEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370          121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHK  197 (350)
Q Consensus       121 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~  197 (350)
                      +++|+.+|.+.+||++....         .+..-++..-+|..+.|.+.+   -+.......++|||-.+|+....+.. 
T Consensus       243 ~aVGts~G~v~iyDLRa~~p---------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-  312 (703)
T KOG2321|consen  243 VAVGTSTGSVLIYDLRASKP---------LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-  312 (703)
T ss_pred             EEeeccCCcEEEEEcccCCc---------eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-
Confidence            99999999999999996432         222333456789999998764   33344456899999999999998874 


Q ss_pred             CCceeEEEEEccCCeEEeeecCccc
Q 045370          198 KGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       198 ~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      ...+..+|+-|++-+++++-.+..+
T Consensus       313 t~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  313 TSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             cCCcCceeeecCCceEEEecCCCcc
Confidence            5569999999999988877766433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.2e-11  Score=110.24  Aligned_cols=181  Identities=13%  Similarity=0.041  Sum_probs=111.6

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .+|||||+.|+..+.+   ..|.+||+.+                           +.. ..+....+.+....|+|.+.
T Consensus       201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------------g~~-~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        201 PAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------------GRR-RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             ceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------------CCE-EEeecCCCCccceEECCCCC
Confidence            3799999999887643   3599999872                           222 12222334456778876444


Q ss_pred             cEEEEEeCCCcEEEEeC--CCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceee
Q 045370           78 TFFVSSSLDATCKVWDL--GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .++++.+.+|...+|.+  ..+.......+........|+|||+.|+..+. +|...+|.+....         .....+
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------g~~~~l  323 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------GAAQRV  323 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------CceEEE
Confidence            44456778888776654  44443333334445667889999998876553 4666666553210         011122


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCC---cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH--LISASEDK---TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+........|+|++  ++..+.++   .|++||+.+++... +.. ........|+|+|+.|+.++.+.
T Consensus       324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecC
Confidence            2222334467899999  55555443   69999998876543 332 23346789999999988777653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3e-12  Score=104.10  Aligned_cols=196  Identities=17%  Similarity=0.123  Sum_probs=134.2

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCcccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      .-.+..++|++ .-..++++..|-.|++||-.. +....++  ....|+|++|-|.+. .|++|+ .+.|.+|.......
T Consensus        98 ~~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccc
Confidence            34567788866 445578899999999999776 4444444  456799999999654 566666 45688998764332


Q ss_pred             cccc----ccccccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          141 EDHF----IVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       141 ~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      ....    ......+....+| .+|++|+|++++  +++++ .|..|.|||..++..+.-.....+.++-+.||||+.+|
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence            2211    0111222334455 789999999999  77777 46789999999988776654456788999999999998


Q ss_pred             EeeecCccccccc---------cCCccccCCCCccccccceEEeeccccCCCCcccccccc
Q 045370          214 SEVSNCQRKLKKD---------RMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRR  265 (350)
Q Consensus       214 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  265 (350)
                      +++.-| .++++|         .+......++...+++.+.+++..+.++ ....++.|..
T Consensus       254 faAt~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~  312 (445)
T KOG2139|consen  254 FAATCD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDG  312 (445)
T ss_pred             EEeccc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecC
Confidence            866554 333333         3444445788888999999988887663 2333455443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.42  E-value=3.2e-11  Score=107.79  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=116.8

Q ss_pred             eecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +|||||++|+.++.+   ..|++||+.+                           +. ...+..+...+.++.|++.+..
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------------g~-~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------------GQ-REKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------------CC-EEEeecCCCCccceEECCCCCE
Confidence            689999999887654   4799999872                           21 1222334455667788664444


Q ss_pred             EEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCcccccccccccccccee
Q 045370           79 FFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        79 ~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++++.+.++  .|.+||+.++.......+........|+|+++.|+..+. ++  .|+++|+..+.           ...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----------~~~  316 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----------VRR  316 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------EEE
Confidence            445555554  588899988766554445555567789999998876554 33  57777776432           113


Q ss_pred             eeccCCceEEEEecCCe--EEEEeCCC---cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          154 LKGHNGSITALAFSASH--LISASEDK---TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +..+...+..+.|+|++  ++.++.++   .|.+||+.++... .+... .......|+|+++.|+.++.++
T Consensus       317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            33345567788999998  66666655   7899999876543 23222 2345668999999888776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=6.2e-13  Score=111.25  Aligned_cols=179  Identities=15%  Similarity=0.168  Sum_probs=133.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|-|.--+|++++..|.++--|+.                           .+..+..+....+.+..+.-+| -+..+-
T Consensus       216 eFLPyHfLL~~~~~~G~L~Y~DVS---------------------------~GklVa~~~t~~G~~~vm~qNP-~NaVih  267 (545)
T KOG1272|consen  216 EFLPYHFLLVAASEAGFLKYQDVS---------------------------TGKLVASIRTGAGRTDVMKQNP-YNAVIH  267 (545)
T ss_pred             cccchhheeeecccCCceEEEeec---------------------------hhhhhHHHHccCCccchhhcCC-ccceEE
Confidence            456666677777777777777777                           5777777777778888887766 456788


Q ss_pred             EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +|...|+|.+|......++.. +.|.++|.+++++++|+++++.+.|..++|||++.....          .++.. .-+
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql----------~t~~t-p~~  336 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL----------HTYRT-PHP  336 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc----------ceeec-CCC
Confidence            999999999999998887665 679999999999999999999999999999999965322          12222 346


Q ss_pred             eEEEEecCCeEEEEeCCCcEEEEE-CCCce--EEEEec--cCCCceeEEEEEccCCeEEeeecC
Q 045370          161 ITALAFSASHLISASEDKTVCLWD-VTRRV--SIRRFN--HKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       161 i~~~~~~~~~l~s~~~dg~v~iwd-~~~~~--~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ...+++|..++++.+....|.||- .-.+.  .-..+-  ...++|..+.|.|-...|..|-..
T Consensus       337 a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~  400 (545)
T KOG1272|consen  337 ASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG  400 (545)
T ss_pred             ccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence            678899999977777777899994 32221  111111  224589999999988877755444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=7.1e-12  Score=111.77  Aligned_cols=148  Identities=14%  Similarity=0.081  Sum_probs=99.7

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFV  132 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i  132 (350)
                      ...+..|...+.+..|+| +++.++.++.+   ..|.+||+.+++........+....++|+|||+.|+.++ .+|.+.+
T Consensus       196 ~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence            445567788899999977 66667766543   369999999886544433444556789999999888764 6776655


Q ss_pred             E--eCCccccccccccccccceeeeccCCceEEEEecCCe--EEE-EeCCCcEEEEECCCc-eEEEEeccCCCceeEEEE
Q 045370          133 S--PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS-ASEDKTVCLWDVTRR-VSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       133 ~--d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s-~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~  206 (350)
                      |  |+..+           ....+..+...+....|+|++  |+. +..+|...||++... .....+ .+.+  ....|
T Consensus       275 y~~d~~~~-----------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~  340 (429)
T PRK01742        275 YVMGANGG-----------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQI  340 (429)
T ss_pred             EEEECCCC-----------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccC
Confidence            5  54422           123455666778899999998  454 446788888876432 222223 2333  45789


Q ss_pred             EccCCeEEeeecC
Q 045370          207 IRQSSLLSEVSNC  219 (350)
Q Consensus       207 ~~~~~~l~~~~~~  219 (350)
                      +|+|+.|+.++.+
T Consensus       341 SpDG~~ia~~~~~  353 (429)
T PRK01742        341 SADGKTLVMINGD  353 (429)
T ss_pred             CCCCCEEEEEcCC
Confidence            9999998877654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=4.6e-12  Score=106.74  Aligned_cols=223  Identities=20%  Similarity=0.202  Sum_probs=142.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc-------------------cccEE--Eeeccccccceee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL-------------------DQRLI--EMELRSLRSLLHY   59 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~~~~   59 (350)
                      |.|...|..|++||.|..|.+||+...........++....                   ++++-  .............
T Consensus       148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r  227 (559)
T KOG1334|consen  148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR  227 (559)
T ss_pred             eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence            46888999999999999999999987554443333332211                   11111  1111111222445


Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cC-----------------------------
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YP-----------------------------  106 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~-----------------------------  106 (350)
                      +..|.++|.-++.-|....-|.+++.|+.+.-.|++++.....+.    ..                             
T Consensus       228 l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R  307 (559)
T KOG1334|consen  228 LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR  307 (559)
T ss_pred             cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence            677889999888888777788899999998888887653222211    11                             


Q ss_pred             -----------------------------CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc--cccc-eee
Q 045370          107 -----------------------------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG--EDQH-SVL  154 (350)
Q Consensus       107 -----------------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~-~~~  154 (350)
                                                   -.|++++|+.++.-+++.-.|-.|+++.-..+.........  ...+ +.+
T Consensus       308 vYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY  387 (559)
T KOG1334|consen  308 VYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY  387 (559)
T ss_pred             hhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence                                         13556666655555555555556666633322211111111  1111 236


Q ss_pred             eccCC--ceEEEEec-CCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--cccc
Q 045370          155 KGHNG--SITALAFS-ASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKL  223 (350)
Q Consensus       155 ~~~~~--~i~~~~~~-~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~  223 (350)
                      ++|..  .|.++-|- |..  +++|+.-|.|.||+-.+++.+.-+.+-...|.||.-+|.-.+||+++-+  .++|
T Consensus       388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence            77754  57777765 443  8888888999999999999999888777799999999999999966644  4444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.38  E-value=5e-11  Score=110.95  Aligned_cols=186  Identities=17%  Similarity=0.208  Sum_probs=125.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS   83 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~   83 (350)
                      ++++.+|+|||.||+|++||........                    .......++..-...+.++..+. +++.+|.+
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------GSARSELTYSPEGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCc--------------------ceeeeeEEEeccCCceEEEEecc-CCCeEEEE
Confidence            4556999999999999999988321110                    01112222233456777777766 56778999


Q ss_pred             eCCCcEEEEeCCCCce-------EEEE--ecCCcee-EEEEcC-CCc-EEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           84 SLDATCKVWDLGSGIL-------IQTQ--VYPQAVT-AIAFHP-GEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~-------~~~~--~~~~~v~-~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +.||.|++.+++....       ....  ...+.+. .-+|.. .+. .++.+...+.|..||.+........       
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------- 1189 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------- 1189 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-------
Confidence            9999999999886211       1111  1223333 333433 233 6777888899999999965432211       


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCC---eEEeeec
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSS---LLSEVSN  218 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~---~l~~~~~  218 (350)
                       ......+.|++++.+|.+  ++.|+..|.+-+||+|-+.++..+. ++..++..+..+|..+   ..++++.
T Consensus      1190 -k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 -KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             -hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence             222345789999999998  9999999999999999999888875 3457888888887643   4444444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.37  E-value=1.1e-11  Score=115.33  Aligned_cols=165  Identities=24%  Similarity=0.270  Sum_probs=120.9

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEEe-cCCceeEEEEcCCCcEEEEEc
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-------ILIQTQV-YPQAVTAIAFHPGEQLLFAGS  125 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  125 (350)
                      +..+..+..|...+..++.+++++.+|+|||.||+|++|+.+.-       +...++. ....+.++...+.++.+++++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            56777888999999999999988899999999999999998641       1122233 567899999999999999999


Q ss_pred             cCCeEEEEeCCccccccccccccccceeeecc-CCceEEE-EecCC----eEEEEeCCCcEEEEECCCceEEEEec--cC
Q 045370          126 IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH-NGSITAL-AFSAS----HLISASEDKTVCLWDVTRRVSIRRFN--HK  197 (350)
Q Consensus       126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~-~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~--~~  197 (350)
                      .||.|.+.++........   .....+....+ .+.+..| ++...    .++.+...+.|..||++....+.+++  ..
T Consensus      1118 ~DG~v~~~~id~~~~~~~---~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKR---VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             CCCeEEEEEccccccccc---eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            999999999885321111   11111111111 2233333 34322    27778888999999999887776664  34


Q ss_pred             CCceeEEEEEccCCeEEeeecCcc
Q 045370          198 KGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       198 ~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .|.|++++.+|.+.+++.|...|.
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCce
Confidence            578999999999999998887765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.36  E-value=2e-11  Score=100.67  Aligned_cols=161  Identities=20%  Similarity=0.225  Sum_probs=115.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ..++++++||.+..+....++++.....                        .........-...-+++.+...+...++
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~------------------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v  124 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPK------------------------GAKLLDVSCVPKRPTAISFIREDTSVLV  124 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCC------------------------cceeeeEeecccCcceeeeeeccceEEE
Confidence            4678899999998888887888763111                        0111111112223344444443433332


Q ss_pred             --EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           82 --SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 --s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                        ..+....+.+|....+.+...++|-.-++.++|+||+.+|++++.|+.|++-..........         -.-||..
T Consensus       125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies---------fclGH~e  195 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES---------FCLGHKE  195 (390)
T ss_pred             EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh---------hccccHh
Confidence              34555667777777788888889999999999999999999999999999977664322221         2347999


Q ss_pred             ceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370          160 SITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       160 ~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      -|..++.-++. |++|+.|++|++||+++|+.+.++.
T Consensus       196 FVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 FVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             heeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            99999999999 8999999999999999999887664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.4e-10  Score=101.32  Aligned_cols=152  Identities=15%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             cceeeeccccCCceEEEEeeCCCcEEEEEeC---CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCe-
Q 045370           55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSL---DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGR-  129 (350)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~-  129 (350)
                      .....+..|...+.+..|+| +++.|+..+.   +..|.+||+.++.......+.+.+....|+|+|+.|+ +.+.++. 
T Consensus       192 ~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            33445567788999999977 5666666543   4689999999887765555667788899999998775 5555554 


Q ss_pred             -EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeE
Q 045370          130 -IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTN  203 (350)
Q Consensus       130 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~  203 (350)
                       |++||+..+..           ..+..+........|+|++  ++..+ .+|  .|++||+.++... .+..+.+.+..
T Consensus       271 ~Iy~~d~~~~~~-----------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~  338 (435)
T PRK05137        271 DIYTMDLRSGTT-----------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST  338 (435)
T ss_pred             eEEEEECCCCce-----------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence             77778774322           2344555566778999998  55554 333  6888898766543 34334455677


Q ss_pred             EEEEccCCeEEeeecC
Q 045370          204 LVVIRQSSLLSEVSNC  219 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~  219 (350)
                      ..|+|+|+.|+..+.+
T Consensus       339 ~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        339 PVWSPRGDLIAFTKQG  354 (435)
T ss_pred             eEECCCCCEEEEEEcC
Confidence            8999999998876543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=2.7e-11  Score=99.45  Aligned_cols=174  Identities=16%  Similarity=0.276  Sum_probs=125.4

Q ss_pred             CEEEEEeCC--CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcEEEEEe
Q 045370            8 FLLISGSDD--GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTFFVSSS   84 (350)
Q Consensus         8 ~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~   84 (350)
                      .++|+||..  ..+.|||+++.               .++|.........+-   ..-.-.++++.|.++. ...|++++
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~---------------~qiw~aKNvpnD~L~---LrVPvW~tdi~Fl~g~~~~~fat~T  223 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQS---------------KQIWSAKNVPNDRLG---LRVPVWITDIRFLEGSPNYKFATIT  223 (412)
T ss_pred             ceEecCchhcccceeeeecccc---------------eeeeeccCCCCcccc---ceeeeeeccceecCCCCCceEEEEe
Confidence            467779988  89999999842               122211100000000   0112234566776642 46799999


Q ss_pred             CCCcEEEEeCCCCc-eEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           85 LDATCKVWDLGSGI-LIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        85 ~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      .-+.|++||.+.++ ++..+. ...+++++...|.++.+++|..-|.+..||++.+....         ..+.+..+.|+
T Consensus       224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g---------~~~kg~tGsir  294 (412)
T KOG3881|consen  224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG---------CGLKGITGSIR  294 (412)
T ss_pred             cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec---------cccCCccCCcc
Confidence            99999999999764 444554 46789999999999999999999999999999755432         13677889999


Q ss_pred             EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          163 ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       163 ~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                      ++..+|..  +++++-|..|||+|+.+.++++..- -...++++.+.++
T Consensus       295 sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             eEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            99999997  9999999999999999987776654 2455666666554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=8.2e-11  Score=105.97  Aligned_cols=194  Identities=15%  Similarity=0.165  Sum_probs=141.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .++||+++++|+|..||.|.+|.--..                       .........+.-|.+.|.+++|++ +|.+|
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~-~G~~L  266 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSS-DGAYL  266 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEecccc-----------------------ccccccceEEEecccccceeEEec-CCceE
Confidence            368999999999999999999964310                       011233445667999999999976 77889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce-eeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS-VLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (350)
                      ++||..+.+-+|.+.+++........++|..+.++||+.+.+....|+.|.+..............-..+.. .-+...+
T Consensus       267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             eecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            999999999999999998544456788999999999999999999999999988754432211100000000 0122345


Q ss_pred             ceEEEEecCC-e-EEEEeCCCcEEEEECCCceEEEEec-----cCC------CceeEEEEEccCCeEEeeec
Q 045370          160 SITALAFSAS-H-LISASEDKTVCLWDVTRRVSIRRFN-----HKK------GVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       160 ~i~~~~~~~~-~-l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~------~~v~~l~~~~~~~~l~~~~~  218 (350)
                      -.+.++++|. + ++-.+..|.|.+||+.+.+.+..+.     .+.      -.+++++.+-.|.++++.-.
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~  418 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA  418 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence            5677888883 3 8888889999999998877666553     122      25778888888999987643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.32  E-value=1.5e-12  Score=116.41  Aligned_cols=117  Identities=27%  Similarity=0.407  Sum_probs=105.2

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                      +..+.+|...|.|+.|.. .+.++++|+.|..|+||.+.++.++... +|.+.|+.++.+.+..++++++.|..|++|-+
T Consensus       183 ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            345678999999999865 6789999999999999999999998885 59999999999999999999999999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECC
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVT  186 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~  186 (350)
                      .          ...++..+.+|++.|++++|+|-.  +.+.||++++||.+
T Consensus       262 ~----------~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  262 P----------DGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR  300 (1113)
T ss_pred             C----------CCchHHHHhccccceeeeccCccc--cCCCCCceEecccc
Confidence            8          456666899999999999999965  77889999999988

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.31  E-value=3.7e-11  Score=96.69  Aligned_cols=195  Identities=15%  Similarity=0.136  Sum_probs=127.3

Q ss_pred             eecCCCCEEEE-EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLIS-GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|+.|..++++ ...|+.|.+|++.                           .......+.....++..+.|+|.+.+++
T Consensus        55 eW~ads~~ilC~~yk~~~vqvwsl~---------------------------Qpew~ckIdeg~agls~~~WSPdgrhiL  107 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKDPKVQVWSLV---------------------------QPEWYCKIDEGQAGLSSISWSPDGRHIL  107 (447)
T ss_pred             eeeccceeeeeeeeccceEEEEEee---------------------------cceeEEEeccCCCcceeeeECCCcceEe
Confidence            34445544333 3356677777777                           4555666777889999999988666888


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      .+...|-.|.+|.+.+.+.....-....+..++|+|+|++.+.++.-.....+.+...+       .-.....+...+-.
T Consensus       108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-------~W~ll~~f~~dT~D  180 (447)
T KOG4497|consen  108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-------AWILLKEFKLDTID  180 (447)
T ss_pred             eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-------HHHHHHhcCCCccc
Confidence            89999999999999988776654455567999999999999888754322222221100       11112244445566


Q ss_pred             eEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc--cccccccCCccccCCCCc
Q 045370          161 ITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ--RKLKKDRMPSLEKYPQLN  238 (350)
Q Consensus       161 i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~  238 (350)
                      .+.+.|+|+|       ..+.+||.--...+..+. ..-.+..+.|+|.+++|+.|+.|+  ++++-..+.+++++....
T Consensus       181 ltgieWsPdg-------~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~  252 (447)
T KOG4497|consen  181 LTGIEWSPDG-------NWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC  252 (447)
T ss_pred             ccCceECCCC-------cEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence            7889999997       123456543222222232 234688899999999999999984  555555555555554433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.30  E-value=1.1e-10  Score=92.49  Aligned_cols=187  Identities=14%  Similarity=0.092  Sum_probs=130.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|++.|.-++++..+|.+.+-+...                         ..-.....++.|.-+.+...|+..+.+++
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~-------------------------~~le~vq~wk~He~E~Wta~f~~~~pnlv  181 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETE-------------------------MVLEKVQTWKVHEFEAWTAKFSDKEPNLV  181 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecce-------------------------eeeeecccccccceeeeeeecccCCCceE
Confidence            46778888888888888887444330                         01223447789999999999998888999


Q ss_pred             EEEeCCCcEEEEeCC-CCceEEE--EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLG-SGILIQT--QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++|+.|+.+..||++ .++.+..  ..|...|.+|.-+| .+.+|++|+.|..|++||.++...+         +.. ..
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---------l~~-~~  251 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---------LFK-AK  251 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---------ccc-Cc
Confidence            999999999999999 3444443  45888899998876 6789999999999999999953221         111 12


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCc--e---EEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRR--V---SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~--~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      -.+.|..+.++|..   ++.++.-.-.+|-+...+  +   .......|.+-...-.|.....+|++++.-++.
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence            23789999999976   444554444677776543  2   233445666666666665445678877655444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=3.8e-10  Score=100.62  Aligned_cols=152  Identities=17%  Similarity=0.120  Sum_probs=97.9

Q ss_pred             eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEE
Q 045370           58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVS  133 (350)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~  133 (350)
                      ..+..+...+.+.+|+| +++.++..+.+   ..|.+||+.+++........+...+..|+|||+.|+ +.+.+|...+|
T Consensus       189 ~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence            34456778888999977 56666665532   359999999987765544556677899999998876 56777776666


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEE--CCCceEEEEeccCCCceeEEEEEc
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWD--VTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd--~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      .+...         ......+..+........|+|++  ++..+ .+|...||.  +.++... .+..+.......+|+|
T Consensus       268 ~~d~~---------~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~Sp  337 (427)
T PRK02889        268 TVNAD---------GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISP  337 (427)
T ss_pred             EEECC---------CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECC
Confidence            54321         11122444455556778899999  55444 345555664  4444432 2222223345678999


Q ss_pred             cCCeEEeeecCc
Q 045370          209 QSSLLSEVSNCQ  220 (350)
Q Consensus       209 ~~~~l~~~~~~~  220 (350)
                      +|++|+..+..+
T Consensus       338 DG~~Ia~~s~~~  349 (427)
T PRK02889        338 DGKLLAYISRVG  349 (427)
T ss_pred             CCCEEEEEEccC
Confidence            999998766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2e-10  Score=102.39  Aligned_cols=167  Identities=14%  Similarity=0.048  Sum_probs=106.6

Q ss_pred             CeecCCCCEEEEE-eCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISG-SDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      ++|||||+.|+.. +.+|  .|.+||+.+                           +. ...+..+...+....|+| ++
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------------g~-~~~lt~~~~~~~~~~wSP-DG  298 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------------GQ-IRQVTDGRSNNTEPTWFP-DS  298 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------------CC-EEEccCCCCCcCceEECC-CC
Confidence            3799999988754 4455  488888872                           22 222333445567788866 56


Q ss_pred             cEEEEEeC-CCcEEE--EeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCccccccccccccccc
Q 045370           78 TFFVSSSL-DATCKV--WDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        78 ~~l~s~~~-d~~v~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +.|+..+. ++...+  +|+.++................|+|+|++|+..+.+   ..|.+||+.++...          
T Consensus       299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~----------  368 (429)
T PRK03629        299 QNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----------  368 (429)
T ss_pred             CEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE----------
Confidence            66655554 444444  467666554433344456678999999998776543   35888888754321          


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCc---EEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKT---VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~---v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                       .+... .......|+|++  ++.++.++.   ++++++. +.....+..|.+.+...+|+|-
T Consensus       369 -~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        369 -VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             -EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence             12111 123457899999  666666653   6777874 5566677778888899999873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.2e-11  Score=110.42  Aligned_cols=144  Identities=22%  Similarity=0.243  Sum_probs=118.7

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      ++++.-++++|+.-+.|.+|+..                           .......+.+|.+.|..+.++. ++.++++
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~---------------------------~dn~p~~l~GHeG~iF~i~~s~-dg~~i~s  192 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPH---------------------------EDNKPIRLKGHEGSIFSIVTSL-DGRYIAS  192 (967)
T ss_pred             ccCcEEEEEeccccccEEEEecc---------------------------ccCCcceecccCCceEEEEEcc-CCcEEEE
Confidence            46667789999999999999876                           1222226789999999999955 7899999


Q ss_pred             EeCCCcEEEEeCCCCceEE--EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC-C
Q 045370           83 SSLDATCKVWDLGSGILIQ--TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN-G  159 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~  159 (350)
                      .|.|.++++|++.+.+...  .+.|+..+..++|.|+  .+++++.|.+.++|+..-           .....+.+|. .
T Consensus       193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-----------~~l~~y~~h~g~  259 (967)
T KOG0974|consen  193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-----------TQLEVYDEHSGK  259 (967)
T ss_pred             EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-----------ceehhhhhhhhc
Confidence            9999999999999987765  3789999999999988  999999999999996552           2222555664 5


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTR  187 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~  187 (350)
                      .|..++..++.  .+|++.||.+++||+..
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            68888988887  99999999999999865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.3e-09  Score=97.77  Aligned_cols=176  Identities=16%  Similarity=0.047  Sum_probs=108.4

Q ss_pred             eecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +|||||+.|+..+.+   ..|.+||+.+                           +.. ..+....+.+....|+| +++
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~---------------------------g~~-~~l~~~~g~~~~~~~Sp-DG~  255 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDT---------------------------GRR-EQITNFEGLNGAPAWSP-DGS  255 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCC---------------------------CCE-EEccCCCCCcCCeEECC-CCC
Confidence            699999998876643   3688888872                           111 11222233344577866 555


Q ss_pred             EE-EEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370           79 FF-VSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        79 ~l-~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .+ ++...+|  .|.+||+.++.......+........|+|+|+.|+..+. +|  .|+++|+..+...           
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----------  324 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----------  324 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence            44 4555555  588889998876554445555677899999998766553 33  5777777644321           


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeC-CC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISASE-DK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+...........|+|++  ++..+. ++  .|.+||+.+++.. .+. +........|+|+|+.++.++..
T Consensus       325 ~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        325 RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEec
Confidence            111111233457899998  444443 33  5889999887643 332 12223356899999988876654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=3.2e-11  Score=99.97  Aligned_cols=146  Identities=14%  Similarity=0.120  Sum_probs=98.5

Q ss_pred             eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .+++|+. ++..+++|+.||++|+|+..+.. .+....|...|.++.|+|||+.|++.+.| ..++|+..++........
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            5667755 67889999999999999965544 44446799999999999999999999999 999999997733221110


Q ss_pred             ccccceeeeccCCceEEEEecCCe-------EEEEeCCCcEEEEECCCceE-----EEEeccCCCceeEEEEEccCCeEE
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH-------LISASEDKTVCLWDVTRRVS-----IRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~-------l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                              .........+.|+.+.       ++....-+.|+.||+....-     ..+...-...|++++.+++|++++
T Consensus       226 --------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  226 --------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             --------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence                    1122233344554332       22223345677766653221     111112245799999999999999


Q ss_pred             eeecCcccc
Q 045370          215 EVSNCQRKL  223 (350)
Q Consensus       215 ~~~~~~~~~  223 (350)
                      .|+.++-+.
T Consensus       298 lGT~dGsVa  306 (398)
T KOG0771|consen  298 LGTMDGSVA  306 (398)
T ss_pred             EeccCCcEE
Confidence            998876443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.2e-09  Score=97.70  Aligned_cols=177  Identities=14%  Similarity=0.065  Sum_probs=105.2

Q ss_pred             eecCCCCEEEEEeCC-C--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSDD-G--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      .|||||+.|+..+.+ +  .|.+||+.+                           +.. ..+....+......|+|.+..
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~t---------------------------g~~-~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYT---------------------------QVR-EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCC---------------------------CCe-EEecCCCCCcCCeeECCCCCE
Confidence            699999988876543 3  577788762                           111 111111223345678664434


Q ss_pred             EEEEEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCcccccccccccccccee
Q 045370           79 FFVSSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        79 ~l~s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++++.+.++.  |.++|+.+++......+.......+|+|+|+.|+..+. ++  .|+++|+..+...           .
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-----------~  344 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-----------R  344 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------E
Confidence            4455666775  77788888876554445556678899999998776543 34  4666676543211           1


Q ss_pred             eeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          154 LKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +...........|+|++  ++..+ .++  .|.++|+.+++.. .+... .......|+|+|+.|+..+..
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence            21122223456899998  44433 344  4666788877643 23221 122345799999988766654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.1e-09  Score=98.10  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCC--eEE
Q 045370           58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDG--RIF  131 (350)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~  131 (350)
                      ..+..+...+.+..|+| +++.++..+.+   ..|.+||+.+++........+...+..|+|+|+.|+ +.+.+|  .|+
T Consensus       197 ~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            34456677888999976 66667766533   469999999887655544555566889999998775 445555  699


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCCc--EEEEECCCceEEEEeccCCCceeEEEE
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      +||+.++..           ..+..+.......+|+|++  |+.++ .+|.  |+++|+.+++... +..+......++|
T Consensus       276 ~~d~~~g~~-----------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~  343 (433)
T PRK04922        276 VMDLGSRQL-----------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASV  343 (433)
T ss_pred             EEECCCCCe-----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEE
Confidence            999875432           1334444455678999998  55554 3444  7777877765432 2223334557899


Q ss_pred             EccCCeEEeeecC
Q 045370          207 IRQSSLLSEVSNC  219 (350)
Q Consensus       207 ~~~~~~l~~~~~~  219 (350)
                      +|+|++++..+.+
T Consensus       344 SpDG~~Ia~~~~~  356 (433)
T PRK04922        344 SPDGKKIAMVHGS  356 (433)
T ss_pred             CCCCCEEEEEECC
Confidence            9999998876544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=2.6e-10  Score=93.91  Aligned_cols=152  Identities=14%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             eeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC------CceEEEE--ecCCceeEEEEcCCCcEEEEEccCCe
Q 045370           58 HYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS------GILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGR  129 (350)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~  129 (350)
                      .-+.+|.+.|.++.|+. ++.+|++|+.|..+++|.+..      .+++...  .|...|.|++|+...+.+++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            44678999999999976 589999999999999999863      3455554  36678999999999999999999999


Q ss_pred             EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEE--eccCCCceeEE
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRR--FNHKKGVVTNL  204 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~--~~~~~~~v~~l  204 (350)
                      |...|+.+......        ..-....+.|+.+..+|..  |++.+.++.|.+||.+... .+..  ..........+
T Consensus       129 VI~HDiEt~qsi~V--------~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~  200 (609)
T KOG4227|consen  129 VIKHDIETKQSIYV--------ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA  200 (609)
T ss_pred             eEeeecccceeeee--------ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence            99999985432210        0112234589999999966  9999999999999998755 2222  22234567888


Q ss_pred             EEEccCCe-EEeeec
Q 045370          205 VVIRQSSL-LSEVSN  218 (350)
Q Consensus       205 ~~~~~~~~-l~~~~~  218 (350)
                      -|+|...- |++.+.
T Consensus       201 ~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  201 EFHPETPALILVNSE  215 (609)
T ss_pred             eecCCCceeEEeccc
Confidence            99998764 444443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.20  E-value=6.6e-11  Score=95.27  Aligned_cols=177  Identities=15%  Similarity=0.111  Sum_probs=122.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|||+|+++|+++.- .+.|-|.++                           -... .+..--+.|.-+.|.......+.
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~t---------------------------lq~~-qlf~cldki~yieW~ads~~ilC   65 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSET---------------------------LQLH-QLFLCLDKIVYIEWKADSCHILC   65 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccch---------------------------hhHH-HHHHHHHHhhheeeeccceeeee
Confidence            699999999999865 788888773                           1111 11122466777788665556677


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ....|+.|.+|++...+.-..+. .+.++.+++|+|+|+.|+. ..-+-.|.+|.+.+....           .++-...
T Consensus        66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-----------~~~~pK~  134 (447)
T KOG4497|consen   66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-----------LLPHPKT  134 (447)
T ss_pred             eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-----------Eeccccc
Confidence            77889999999999887777665 5678999999999976654 556889999999854321           2223334


Q ss_pred             ceEEEEecCCe-EEEE-e-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          160 SITALAFSASH-LISA-S-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       160 ~i~~~~~~~~~-l~s~-~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .+..++|+|+| +++- + .|.  .+.|..-.....++.+....-..+.+.|+|||..|++-.+
T Consensus       135 ~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  135 NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence            56889999999 3332 2 232  2333333344556666655667899999999999986544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.19  E-value=6.2e-09  Score=93.13  Aligned_cols=150  Identities=19%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             eeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCC--eEE
Q 045370           58 HYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDG--RIF  131 (350)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~  131 (350)
                      ..+..+...+.+..|++ ++++++.++.+   ..|.+||+.++.......+...+.+++|+|+++.|+. .+.++  .|+
T Consensus       183 ~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            44445666788888866 66666665543   4799999998876665556667778999999987764 44444  588


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-CC--cEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-DK--TVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      +||+.++...           .+..+........|+|++  |+..+. ++  .|+++|+.+++.. .+..+......+.|
T Consensus       262 ~~d~~~~~~~-----------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~  329 (417)
T TIGR02800       262 VMDLDGKQLT-----------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW  329 (417)
T ss_pred             EEECCCCCEE-----------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE
Confidence            8888754221           223344445567899988  554443 33  6888898876643 34334556778899


Q ss_pred             EccCCeEEeeecCc
Q 045370          207 IRQSSLLSEVSNCQ  220 (350)
Q Consensus       207 ~~~~~~l~~~~~~~  220 (350)
                      +|+|++++.++.+.
T Consensus       330 spdg~~i~~~~~~~  343 (417)
T TIGR02800       330 SPDGDLIAFVHREG  343 (417)
T ss_pred             CCCCCEEEEEEccC
Confidence            99999988777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.7e-09  Score=99.47  Aligned_cols=178  Identities=15%  Similarity=0.151  Sum_probs=132.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCc----eEEEEeeCCCcEE
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSV----TGLLTISGGTTFF   80 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l   80 (350)
                      .+...++.+..+..+-+||...                           ...+... .+....    ..+.-.+.+.-++
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~---------------------------~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKN---------------------------SSVLSKI-QSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             hhcceEEEEEcCceEEEEeccc---------------------------Cceehhc-CCCceEEEEeEEEEeccCcEEEE
Confidence            3456777888888888888872                           2222211 122111    1112224455678


Q ss_pred             EEEeCCCcEEEEeCCCC-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSG-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.-+.|.+|+.... .......|.+.|.++.|+-+|+++++.|.|..+++|++.+.+...         ...-+|..
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------~~~fgHsa  219 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------CTGFGHSA  219 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------cccccccc
Confidence            99999999999998733 334457899999999999999999999999999999999754432         25568999


Q ss_pred             ceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+..+.+.|+.++++++|.+.++|+.. +..+..+..|.+ .+..++..++...+++++.|+
T Consensus       220 Rvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  220 RVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             eeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence            999999999999999999999999765 444447766654 789999998888888777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.19  E-value=8e-09  Score=89.59  Aligned_cols=180  Identities=13%  Similarity=0.139  Sum_probs=115.9

Q ss_pred             CEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            8 FLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         8 ~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      +++ ++-..+|.|.|.|..                           +...+..+...... .....+++++.++++++.|
T Consensus         6 ~l~~V~~~~~~~v~viD~~---------------------------t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rd   57 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGA---------------------------TNKVVARIPTGGAP-HAGLKFSPDGRYLYVANRD   57 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETT---------------------------T-SEEEEEE-STTE-EEEEE-TT-SSEEEEEETT
T ss_pred             cEEEEEecCCCEEEEEECC---------------------------CCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCC
Confidence            344 556678999999988                           45556665544333 4433446688888888999


Q ss_pred             CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      |.|.++|+.+++.+..+........++++++|++++++. .++.+.++|.++.+..........   ........+..+.
T Consensus        58 g~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~---~~~~~~~Rv~aIv  134 (369)
T PF02239_consen   58 GTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM---PVDGPESRVAAIV  134 (369)
T ss_dssp             SEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE----TTTS---EEEEE
T ss_pred             CeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc---cccccCCCceeEE
Confidence            999999999999999999888899999999999998876 579999999986554332111100   0001345677787


Q ss_pred             ecCCe--EEEEe-CCCcEEEEECCCceEE--EEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          166 FSASH--LISAS-EDKTVCLWDVTRRVSI--RRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       166 ~~~~~--l~s~~-~dg~v~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+|..  ++..- +-+.|.+.|......+  ..+. .........|+|++++++++...
T Consensus       135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  135 ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGG
T ss_pred             ecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccc
Confidence            77776  54444 4488888897765433  3333 34567789999999988876543

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=9.3e-09  Score=91.44  Aligned_cols=146  Identities=12%  Similarity=0.056  Sum_probs=85.5

Q ss_pred             cCCceEEEEeeCCCcEEEEEe-CCC----cEEEEeCCCC---ceEEEEecC-CceeEEEEcCCCcEEEEEc-cCCeEEEE
Q 045370           64 KSSVTGLLTISGGTTFFVSSS-LDA----TCKVWDLGSG---ILIQTQVYP-QAVTAIAFHPGEQLLFAGS-IDGRIFVS  133 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~-~d~----~v~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~i~  133 (350)
                      .+......|+| +++.|+..+ .+|    .+..|++..+   ......... ......+|+|||+.|+..+ .+|...+|
T Consensus       230 ~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        230 QGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            33444567866 555555433 333    3455777653   333333222 3446789999999777655 46655555


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-C--CcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-D--KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      .+....       .......+..+...+....|+|++  |+..+. +  ..|++||+.+++... +......+....|+|
T Consensus       309 ~~~~~~-------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp  380 (428)
T PRK01029        309 IMQIDP-------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI  380 (428)
T ss_pred             EEECcc-------cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC
Confidence            432100       011122344444567788999999  554443 2  469999999887643 332334567899999


Q ss_pred             cCCeEEeeec
Q 045370          209 QSSLLSEVSN  218 (350)
Q Consensus       209 ~~~~l~~~~~  218 (350)
                      ||+.|+....
T Consensus       381 DG~~L~f~~~  390 (428)
T PRK01029        381 DSLHLVYSAG  390 (428)
T ss_pred             CCCEEEEEEC
Confidence            9998875544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.13  E-value=3.5e-08  Score=85.55  Aligned_cols=210  Identities=10%  Similarity=0.075  Sum_probs=121.8

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+++|++++|+++.. +|.|.++++..........         .++...    ..-............++.+.| ++++
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---------~~~~~~----g~g~~~~rq~~~h~H~v~~~p-dg~~  157 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---------QTVRHE----GSGPNPDRQEGPHPHQVVFSP-DGRF  157 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---------EEEESE----EEESSTTTTSSTCEEEEEE-T-TSSE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceee---------eecccC----CCCCcccccccccceeEEECC-CCCE
Confidence            468899999998875 8999999998311100000         000000    000000012234567778866 5555


Q ss_pred             EEE-EeCCCcEEEEeCCCCc--eEE--E--EecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCC--ccccccccccccc
Q 045370           80 FVS-SSLDATCKVWDLGSGI--LIQ--T--QVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLK--FLLLEDHFIVGED  149 (350)
Q Consensus        80 l~s-~~~d~~v~vwd~~~~~--~~~--~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~~  149 (350)
                      +++ .-....|.+|++....  +..  .  +......+.+.|+|+++++++.. .++.|.++++.  .+...........
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            544 4445579999998755  322  1  34556789999999999887665 56889999888  3222111111100


Q ss_pred             cceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC--Cc--eEEEEeccCCCceeEEEEEccCCeEEeeecCccc
Q 045370          150 QHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT--RR--VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~--~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      +  .-.........|+++|++   +++....+.|.+|++.  ++  +.+..+.........++++|+|++|+++..+...
T Consensus       238 ~--~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  238 P--EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             E--TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             c--ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence            0  000112368899999999   4444467789999993  23  3444554334457999999999999988876554


Q ss_pred             cccc
Q 045370          223 LKKD  226 (350)
Q Consensus       223 ~~~~  226 (350)
                      +.+.
T Consensus       316 v~vf  319 (345)
T PF10282_consen  316 VSVF  319 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.12  E-value=3.8e-10  Score=91.50  Aligned_cols=211  Identities=15%  Similarity=0.187  Sum_probs=128.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccc-cccceeeeccccCCceEEEEeeCCC-c
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRS-LRSLLHYSLEHKSSVTGLLTISGGT-T   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~   78 (350)
                      |.|+.+|.+||||..+|.|.+|.-+.....  +.         ..+...+.+ ...-......-...|..+.|+++.+ .
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey---------~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKG--EY---------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeeccccccc--ce---------eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            468899999999999999999976632210  00         000000000 0000001112345788889987554 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCceE-----------------------------------EEE--ecCCceeEEEEcCCCcEE
Q 045370           79 FFVSSSLDATCKVWDLGSGILI-----------------------------------QTQ--VYPQAVTAIAFHPGEQLL  121 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~-----------------------------------~~~--~~~~~v~~~~~~~~~~~l  121 (350)
                      .++..+.|.+|++|.+......                                   +.+  .|.-.|.++.++.|+..+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence            5667778999999987532110                                   111  145578999999999999


Q ss_pred             EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE----e
Q 045370          122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR----F  194 (350)
Q Consensus       122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~----~  194 (350)
                      +++. |=.|.+|++......-.  +..-....+..-..-|++..|+|..   ++-.+..|+|++-|++...+.-.    +
T Consensus       180 lSAD-dLRINLWnlei~d~sFn--IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  180 LSAD-DLRINLWNLEIIDQSFN--IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eecc-ceeeeeccccccCCcee--EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            8876 78999999874221100  0000000111223568889999976   77788899999999995332111    1


Q ss_pred             c------------cCCCceeEEEEEccCCeEEeeecC-cccccc
Q 045370          195 N------------HKKGVVTNLVVIRQSSLLSEVSNC-QRKLKK  225 (350)
Q Consensus       195 ~------------~~~~~v~~l~~~~~~~~l~~~~~~-~~~~~~  225 (350)
                      .            .--..|..+.|+++|+++++-+.- .++|.+
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~  300 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDL  300 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEec
Confidence            1            112368899999999999865432 344443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.09  E-value=9.8e-09  Score=82.59  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=72.5

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCc-EEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT-CKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIF  131 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~  131 (350)
                      ....+.+|...|.|++.+- .|..+||+|..|+ |+|||..+|..+..+.   ....|.+++|+|+..+|+++|..|+++
T Consensus       173 ~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  173 APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence            3467789999999999855 7899999999998 5999999999999875   456799999999999999999999999


Q ss_pred             EEeCCcc
Q 045370          132 VSPLKFL  138 (350)
Q Consensus       132 i~d~~~~  138 (350)
                      ++.++..
T Consensus       252 iF~l~~~  258 (346)
T KOG2111|consen  252 IFSLRDT  258 (346)
T ss_pred             EEEeecC
Confidence            9998853

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=3.4e-08  Score=88.58  Aligned_cols=151  Identities=17%  Similarity=0.073  Sum_probs=98.4

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCC--eE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDG--RI  130 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i  130 (350)
                      ...+..+...+....|+| +++.|+..+.+   ..|.+||+.+++........+......|+|+|+.|+ +.+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            344456677888899976 55666554433   368899999887655444455566789999999876 444454  68


Q ss_pred             EEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEE
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLV  205 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~  205 (350)
                      ++||+.++..           ..+..+........|+|++  ++..+ .+|  .|+++|+.+++... +...........
T Consensus       270 y~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~  337 (430)
T PRK00178        270 YVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPR  337 (430)
T ss_pred             EEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceE
Confidence            8888875432           1233444556678899998  44444 333  58888888776433 221222344578


Q ss_pred             EEccCCeEEeeecCc
Q 045370          206 VIRQSSLLSEVSNCQ  220 (350)
Q Consensus       206 ~~~~~~~l~~~~~~~  220 (350)
                      |+|+|+.++..+...
T Consensus       338 ~Spdg~~i~~~~~~~  352 (430)
T PRK00178        338 LSADGKTLVMVHRQD  352 (430)
T ss_pred             ECCCCCEEEEEEccC
Confidence            999999988776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=3.7e-08  Score=88.28  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=95.6

Q ss_pred             eeeccccCCceEEEEeeCCCcEEEEEe-CCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCe--EE
Q 045370           58 HYSLEHKSSVTGLLTISGGTTFFVSSS-LDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGR--IF  131 (350)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~  131 (350)
                      ..+..+...+.+..|+| +++.++..+ .++  .|.+||+.+++........+......|+|+|+.|+. .+.+|.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            34455667888889976 555555543 333  588899988876544333444567899999997765 455664  77


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      ++|+.++..           ..+..+........|+|++  ++..+ .++  .|+++|+.+++... +..........+|
T Consensus       290 ~~dl~tg~~-----------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~  357 (448)
T PRK04792        290 VVDIATKAL-----------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSI  357 (448)
T ss_pred             EEECCCCCe-----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeE
Confidence            778764321           2333444556778999998  44433 333  57777887776433 2212223345789


Q ss_pred             EccCCeEEeeecCc
Q 045370          207 IRQSSLLSEVSNCQ  220 (350)
Q Consensus       207 ~~~~~~l~~~~~~~  220 (350)
                      +|+|++|+..+...
T Consensus       358 SpDG~~l~~~~~~~  371 (448)
T PRK04792        358 TPDGRSMIMVNRTN  371 (448)
T ss_pred             CCCCCEEEEEEecC
Confidence            99999888766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=4.9e-08  Score=77.85  Aligned_cols=175  Identities=15%  Similarity=0.247  Sum_probs=109.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC----
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG----   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----   76 (350)
                      ++||||+.+||.+...|+|++||+...                .++......     .....-...|.++.|....    
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~----------------~lf~I~p~~-----~~~~d~~~Aiagl~Fl~~~~s~~  107 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGS----------------ELFVIPPAM-----SFPGDLSDAIAGLIFLEYKKSAQ  107 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccc----------------eeEEcCccc-----ccCCccccceeeeEeeccccccc
Confidence            589999999999999999999998731                111111100     0111234566666665543    


Q ss_pred             -CcEEEEEeCCCcEEEEeCCCC-----ceEEEEe----cCCceeEEEEcCCCcEEEEEccC----C-------eEEEEeC
Q 045370           77 -TTFFVSSSLDATCKVWDLGSG-----ILIQTQV----YPQAVTAIAFHPGEQLLFAGSID----G-------RIFVSPL  135 (350)
Q Consensus        77 -~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g-------~i~i~d~  135 (350)
                       ...|+.-..+|.++-|-+..+     +..+.+.    ++..|.++.|+|..++|++|+..    +       -+..|.+
T Consensus       108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi  187 (282)
T PF15492_consen  108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI  187 (282)
T ss_pred             cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence             234666677888877775332     2233332    46789999999998888877642    1       2555655


Q ss_pred             Ccccccccccccc-c------------ccee------eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370          136 KFLLLEDHFIVGE-D------------QHSV------LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       136 ~~~~~~~~~~~~~-~------------~~~~------~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                      -++...-...... +            .+..      .......|..|..+|++  |++.+.+|.|.+|++.+.+.....
T Consensus       188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            4433211100000 0            0001      12246789999999999  999999999999999987777666


Q ss_pred             cc
Q 045370          195 NH  196 (350)
Q Consensus       195 ~~  196 (350)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            43

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.4e-08  Score=91.32  Aligned_cols=174  Identities=17%  Similarity=0.244  Sum_probs=130.3

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      +++|+-|..+|.|++++.+                            +.+ .....|...       ..+|.+++||+.|
T Consensus        49 ~~~~~~GtH~g~v~~~~~~----------------------------~~~-~~~~~~s~~-------~~~Gey~asCS~D   92 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ----------------------------GNP-KTNFDHSSS-------ILEGEYVASCSDD   92 (846)
T ss_pred             cceeeeccccceEEEEecC----------------------------Ccc-ccccccccc-------ccCCceEEEecCC
Confidence            5688999999999999887                            222 233334333       3368999999999


Q ss_pred             CcEEEEeCCCCceEEEEecCCceeEEEEcCC-----CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370           87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-----EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI  161 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (350)
                      |.|.|-.+-+.+....+....++.+++++|+     .+.+++|+..| +.++.-+-....       .. ..+....++|
T Consensus        93 Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------~~-v~l~~~eG~I  163 (846)
T KOG2066|consen   93 GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------DS-VVLSEGEGPI  163 (846)
T ss_pred             CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------cc-eeeecCccce
Confidence            9999999999999988999999999999997     56899999888 777765532111       11 1455667899


Q ss_pred             EEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCC------ceeEEEEEccCCeEEeeecCccccccc
Q 045370          162 TALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKG------VVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       162 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      .++.|..+.+|-++.+| |+|||+.+++.+..++....      ....+.|.++.++++.=+....+..+.
T Consensus       164 ~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  164 HSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            99999988888888776 89999999998888764322      345688988888887444444544443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1e-08  Score=88.93  Aligned_cols=145  Identities=18%  Similarity=0.269  Sum_probs=116.1

Q ss_pred             eCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----cCCceeEEEEc------C--------------CCcEEEEEccCCe
Q 045370           74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQV----YPQAVTAIAFH------P--------------GEQLLFAGSIDGR  129 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~l~~~~~dg~  129 (350)
                      |+...++|....||.+++||...++....+.    ..+...+..|.      |              +-..++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            4456789999999999999999988776653    23444444442      1              2346788888999


Q ss_pred             EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                      |.+|++..++.....        .-..|.+.|+++.++.+-  |.+++.|+.+..|+...++.+..+......+.+++.+
T Consensus        82 v~~ys~~~g~it~~~--------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKL--------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EEEEEecCCeEEEEE--------ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            999999865543322        224799999999998776  9999999999999999999999998888889999999


Q ss_pred             ccCCeEEeeecCccccccc
Q 045370          208 RQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       208 ~~~~~l~~~~~~~~~~~~~  226 (350)
                      |||..+++++....+|.+.
T Consensus       154 ~D~~~l~~as~~ik~~~~~  172 (541)
T KOG4547|consen  154 PDGKILLTASRQIKVLDIE  172 (541)
T ss_pred             CCCCEEEeccceEEEEEcc
Confidence            9999999999988877765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=1.9e-08  Score=79.12  Aligned_cols=172  Identities=12%  Similarity=-0.017  Sum_probs=112.6

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ..+||.||..|...+|...+.                          .........|...|.-+.-.-....-+..++.|
T Consensus        84 c~~la~gG~~g~fd~~~~~tn--------------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~snd  137 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTN--------------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASND  137 (344)
T ss_pred             ccEEEeccccceeeeecccCc--------------------------ccceeeecccccchhhhhhhcccccceeeccCC
Confidence            347899999999999988731                          122222233443332221111112236678889


Q ss_pred             CcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEE
Q 045370           87 ATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA  165 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  165 (350)
                      .++++.++.-+......... -...++.++++++++++.+....|..|.+........      . .........-.+..
T Consensus       138 ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~------~-~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  138 HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE------N-IYEAPTSDHGFYNS  210 (344)
T ss_pred             cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee------e-eEecccCCCceeee
Confidence            99999998855433322211 2388999999999999999999999999875321110      0 02223334456777


Q ss_pred             ecCCe--EEEEeCCCcEEEEECCCceE-EEE----eccCCCceeEEEEEccCC
Q 045370          166 FSASH--LISASEDKTVCLWDVTRRVS-IRR----FNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       166 ~~~~~--l~s~~~dg~v~iwd~~~~~~-~~~----~~~~~~~v~~l~~~~~~~  211 (350)
                      |+...  +|++..||++.|||++.... ...    -..|.+++..+.|++-|.
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            88766  99999999999999997433 222    246899999999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=6.4e-08  Score=86.14  Aligned_cols=132  Identities=13%  Similarity=0.014  Sum_probs=80.7

Q ss_pred             CceEEEEeeCCCcEEEE-EeCCCcEEEEe--CCC-CceEEEE-ecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCc
Q 045370           66 SVTGLLTISGGTTFFVS-SSLDATCKVWD--LGS-GILIQTQ-VYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKF  137 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s-~~~d~~v~vwd--~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~  137 (350)
                      ......|+| ++..|+. ...+|...+|.  +.. +.....+ .....+....|+|+|+.|+..+.+   ..|.+||+..
T Consensus       282 ~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        282 TQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            345567866 5665554 44567666664  432 2222323 234567788999999988876543   4789999875


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EE-EEeC--CCcEEEEECCCceEEEEeccCCCceeEEEEEccC
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LI-SASE--DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~-s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      +...           .+......+....|+|++  |+ ++..  ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus       361 g~~~-----------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        361 GRDY-----------QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCeE-----------EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence            4321           222223456778999998  44 3332  3578899998776544333 44556778888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.97  E-value=4e-07  Score=78.97  Aligned_cols=193  Identities=14%  Similarity=0.162  Sum_probs=117.9

Q ss_pred             CeecCCCCEEEEEeC----CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            1 MVFSDDGFLLISGSD----DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      |+++|++++|++...    +|.|..|++....                       .....+............++..+ +
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-----------------------g~L~~~~~~~~~g~~p~~i~~~~-~   97 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-----------------------GTLTLLNSVPSGGSSPCHIAVDP-D   97 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-----------------------TEEEEEEEEEESSSCEEEEEECT-T
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCc-----------------------ceeEEeeeeccCCCCcEEEEEec-C
Confidence            478999999998877    4689888887200                       01112222222334455666655 5


Q ss_pred             CcEEEEEe-CCCcEEEEeCCC-CceEEE---Eec-----------CCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccc
Q 045370           77 TTFFVSSS-LDATCKVWDLGS-GILIQT---QVY-----------PQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLL  139 (350)
Q Consensus        77 ~~~l~s~~-~d~~v~vwd~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  139 (350)
                      +.+++++. .+|+|.++++.. +.....   ..+           .....++.++|+++++++... ...|.+|++....
T Consensus        98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen   98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            56666654 589999999987 433332   211           234789999999998888653 4689999987543


Q ss_pred             cccccccccccceee-eccCCceEEEEecCCe---EEEEeCCCcEEEEECC--Cce--EEEEecc----C--CCceeEEE
Q 045370          140 LEDHFIVGEDQHSVL-KGHNGSITALAFSASH---LISASEDKTVCLWDVT--RRV--SIRRFNH----K--KGVVTNLV  205 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~--~~~--~~~~~~~----~--~~~v~~l~  205 (350)
                      ..-    .  ....+ .........+.|+|++   +++.-.++.|.++++.  ++.  .+..+..    .  ......+.
T Consensus       178 ~~l----~--~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  178 GKL----T--PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             -TE----E--EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             ceE----E--EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            100    0  01111 2345678899999998   5555568899999988  443  2333321    1  12578899


Q ss_pred             EEccCCeEEeeecCcccc
Q 045370          206 VIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~  223 (350)
                      ++|+|++|+++......+
T Consensus       252 ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             E-TTSSEEEEEECTTTEE
T ss_pred             EecCCCEEEEEeccCCEE
Confidence            999999999776654333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=3.1e-09  Score=102.92  Aligned_cols=176  Identities=18%  Similarity=0.220  Sum_probs=125.8

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEE
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSS   83 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~   83 (350)
                      +|...+.+||+.||.|++|.+..                          ....+......+..|+.+.|+. .|+.+..+
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~--------------------------~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~ 2269 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGH--------------------------GQQVVCFRTAGNSRVTRSRFNH-QGNKFGIV 2269 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccC--------------------------CCeEEEeeccCcchhhhhhhcc-cCCceeee
Confidence            46677899999999999999873                          1222222333448888888877 45567888


Q ss_pred             eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc---cCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           84 SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS---IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ..||.+.+|.+...-.....-|........|-.  ..+++++   .++.+.+||....         ...-..-+.|.+.
T Consensus      2270 d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---------~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2270 DGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---------PMNSLVHTCHDGG 2338 (2439)
T ss_pred             ccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC---------cccceeeeecCCC
Confidence            889999999998332222234677777777754  5666654   4689999997632         1222233789999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC--cccccccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKDR  227 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~~  227 (350)
                      ++++++-|..  |++|+.+|.|++||++..+.+++++.         ++ ...++++++..  +++|++..
T Consensus      2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence            9999999998  99999999999999999888877764         44 45666766654  45665543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.93  E-value=3.3e-07  Score=79.61  Aligned_cols=156  Identities=16%  Similarity=0.138  Sum_probs=103.1

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|+|||+++++++.||.|.++|+.                           ....+..+... ....++++++ ++++++
T Consensus        43 ~~s~Dgr~~yv~~rdg~vsviD~~---------------------------~~~~v~~i~~G-~~~~~i~~s~-DG~~~~   93 (369)
T PF02239_consen   43 KFSPDGRYLYVANRDGTVSVIDLA---------------------------TGKVVATIKVG-GNPRGIAVSP-DGKYVY   93 (369)
T ss_dssp             E-TT-SSEEEEEETTSEEEEEETT---------------------------SSSEEEEEE-S-SEEEEEEE---TTTEEE
T ss_pred             EecCCCCEEEEEcCCCeEEEEECC---------------------------cccEEEEEecC-CCcceEEEcC-CCCEEE
Confidence            589999999999999999999998                           45555555443 3457788866 555555


Q ss_pred             -EEeCCCcEEEEeCCCCceEEEEec--------CCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccc
Q 045370           82 -SSSLDATCKVWDLGSGILIQTQVY--------PQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        82 -s~~~d~~v~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                       +...++.+.++|..+.+.+..+..        ...+..+..+|....++..-. .+.|.+.|.......         .
T Consensus        94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~---------~  164 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL---------K  164 (369)
T ss_dssp             EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE---------E
T ss_pred             EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc---------c
Confidence             556789999999999998887652        235677888888885555544 488888887643111         1


Q ss_pred             eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec
Q 045370          152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      ..............|+|++   +++...+..|-++|..+++.+..+.
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            1222334567789999998   4555667799999999998877653

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.93  E-value=5.8e-09  Score=82.98  Aligned_cols=151  Identities=22%  Similarity=0.236  Sum_probs=103.1

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      .+++.+||.|+.+.-||++-+                         ..........|...|.+|.-+++.+.+++||+.|
T Consensus       178 pnlvytGgDD~~l~~~D~R~p-------------------------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD  232 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIP-------------------------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD  232 (339)
T ss_pred             CceEEecCCCceEEEEEecCC-------------------------cceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence            368999999999999999820                         1233344578999999999999889999999999


Q ss_pred             CcEEEEeCCC-CceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370           87 ATCKVWDLGS-GILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        87 ~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      -.|++||.++ ++++..-+..+.|..+.++|.- ..++.++.-.-.++-+.......     ........+.|.+-++.-
T Consensus       233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-----FQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             cceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc-----hheeeeccccccceeecc
Confidence            9999999994 6777776777999999999943 23333333333555555533221     111233556677767777


Q ss_pred             EecCC-e-EEEEe-CCCcEE-EEECCC
Q 045370          165 AFSAS-H-LISAS-EDKTVC-LWDVTR  187 (350)
Q Consensus       165 ~~~~~-~-l~s~~-~dg~v~-iwd~~~  187 (350)
                      .|... + +++++ .|..++ +|-.-+
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ccccccceeeeeeccccceeeeeeecc
Confidence            77443 3 77765 466544 664433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.93  E-value=1.7e-07  Score=73.89  Aligned_cols=146  Identities=10%  Similarity=-0.022  Sum_probs=102.7

Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce--EE--EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL--IQ--TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      +.++.++ +++.++++.+....|..|.+.....  +.  .-...+.-.+..|+.....+++++.||.+.|||++......
T Consensus       161 ~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            6777774 4789999999999999999876432  22  12345567788999999999999999999999999765432


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEecc-------CC-CceeEEEEEccC
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNH-------KK-GVVTNLVVIRQS  210 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~-~~v~~l~~~~~~  210 (350)
                      .....     .-..|.+.+..+.|++.|    |+..-.-+.+++-|++++.....+..       |. ..+..-+|+.++
T Consensus       240 ~~~ss-----trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  240 AEISS-----TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             hhhcc-----cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence            21111     334588999999999876    44444457899999999876655532       22 236666666666


Q ss_pred             CeEEeeec
Q 045370          211 SLLSEVSN  218 (350)
Q Consensus       211 ~~l~~~~~  218 (350)
                      .-+.+.+.
T Consensus       315 ~s~~v~~e  322 (344)
T KOG4532|consen  315 ESNDVKNE  322 (344)
T ss_pred             cccccccc
Confidence            55554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.91  E-value=4.9e-07  Score=76.97  Aligned_cols=146  Identities=12%  Similarity=0.059  Sum_probs=111.0

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCC-cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDA-TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      .+|...|.-..+.. +++-++.|..|| .+-++|.+++......+.-+.|.++..+|+|++++++.....+.++|+.++.
T Consensus       356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            35666676666544 445688899999 8999999999888877778899999999999999999989999999999764


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--EEEEeCC----CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASED----KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      ...          .-+...+-|+.+.|+|++  +|-+--+    ..|+++|+.+++....-. ..+.=.+-+|.|++++|
T Consensus       435 v~~----------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         435 VRL----------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             eeE----------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence            321          223345779999999998  5555444    479999999887665443 33444566899999987


Q ss_pred             Eeeec
Q 045370          214 SEVSN  218 (350)
Q Consensus       214 ~~~~~  218 (350)
                      .--+.
T Consensus       504 YfLs~  508 (668)
T COG4946         504 YFLSA  508 (668)
T ss_pred             EEEec
Confidence            75443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=6.5e-08  Score=78.83  Aligned_cols=217  Identities=18%  Similarity=0.169  Sum_probs=128.2

Q ss_pred             CeecCCC--CEEEEEeCCCcEEEEeCcccccccccc--ccccccc-cccEEEeecccc------ccceeeeccccCCceE
Q 045370            1 MVFSDDG--FLLISGSDDGMICVWSMTRLLKQTSEL--MHHSDQL-DQRLIEMELRSL------RSLLHYSLEHKSSVTG   69 (350)
Q Consensus         1 i~~s~dg--~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~h~~~v~~   69 (350)
                      |.|.+++  ..++....|.+|++|.+..........  +....+. ...+..+.....      ......-.+|+-.|.+
T Consensus        90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS  169 (433)
T KOG1354|consen   90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS  169 (433)
T ss_pred             ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence            3566655  356667789999999987422221000  0000000 001111100000      1111233689999999


Q ss_pred             EEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEE--Ee------cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccc
Q 045370           70 LLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQT--QV------YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~--~~------~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      +.+++ +...++++ .|=.|.+|++.--. ....  ++      ...-|++..|||. .+.++-.+..|.|++-|++...
T Consensus       170 IS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  170 ISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            99977 55666665 58889999987422 2221  21      1235899999994 5667777788999999999654


Q ss_pred             ccccccc------ccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEEC-CCceEEEEeccCCC------------
Q 045370          140 LEDHFIV------GEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDV-TRRVSIRRFNHKKG------------  199 (350)
Q Consensus       140 ~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~------------  199 (350)
                      +-.....      ......-+..--..|..+.|+++| ++-+-.--+|++||+ ...+++.++..|..            
T Consensus       248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence            3322110      011111233344678899999998 443333468999999 45677777765531            


Q ss_pred             ---ceeEEEEEccCCeEEeeecC
Q 045370          200 ---VVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       200 ---~v~~l~~~~~~~~l~~~~~~  219 (350)
                         .-..++|+.++..+++|+..
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~  350 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYN  350 (433)
T ss_pred             chhheeEEEEcCCcceEeccccc
Confidence               12457899999999988765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=8.9e-07  Score=72.97  Aligned_cols=192  Identities=15%  Similarity=0.181  Sum_probs=122.3

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      |+|+|++++|.++-.+   |.|..|.++.              .++.+         ..+........+...++..+ ++
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~--------------~~G~L---------t~ln~~~~~g~~p~yvsvd~-~g  100 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDP--------------DDGRL---------TFLNRQTLPGSPPCYVSVDE-DG  100 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcC--------------CCCeE---------EEeeccccCCCCCeEEEECC-CC
Confidence            5799999999888765   7788887772              00111         11111111222335666654 66


Q ss_pred             cEEEEEeC-CCcEEEEeCCC-Cce---EEEEecCCc----------eeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccc
Q 045370           78 TFFVSSSL-DATCKVWDLGS-GIL---IQTQVYPQA----------VTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLE  141 (350)
Q Consensus        78 ~~l~s~~~-d~~v~vwd~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  141 (350)
                      ++++++.. .|.|.++-++. |.+   +....|.+.          +....+.|+++++++.+- --.|.+|++..+.+.
T Consensus       101 ~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~  180 (346)
T COG2706         101 RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT  180 (346)
T ss_pred             CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence            67766654 57899999876 432   233455555          889999999999998864 357999999855433


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc-eEEEEecc---------CCCceeEEEEEc
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-VSIRRFNH---------KKGVVTNLVVIR  208 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~-~~~~~~~~---------~~~~v~~l~~~~  208 (350)
                      ..     .+. .+ .......-|.|+|++   .+..=-+++|-+|..... ..+..++.         .......+..+|
T Consensus       181 ~~-----~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         181 PA-----DPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             cc-----ccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            21     111 11 345667889999999   445556899999998873 22222221         133567888999


Q ss_pred             cCCeEEeeecCcccc
Q 045370          209 QSSLLSEVSNCQRKL  223 (350)
Q Consensus       209 ~~~~l~~~~~~~~~~  223 (350)
                      +|++|.++......+
T Consensus       254 dGrFLYasNRg~dsI  268 (346)
T COG2706         254 DGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCEEEEecCCCCeE
Confidence            999999665443333

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.89  E-value=4.5e-09  Score=101.85  Aligned_cols=144  Identities=15%  Similarity=0.306  Sum_probs=112.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|+.+|+.+..+..||.+.+|.+.                            ..++...+-|+....+..|..   ..+
T Consensus      2257 ~~f~~qGnk~~i~d~dg~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~ 2305 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLL 2305 (2439)
T ss_pred             hhhcccCCceeeeccCCceeecccC----------------------------CcceeccccCCccccceeeee---hhh
Confidence            3578888888888889999999876                            566677788999999999876   456


Q ss_pred             EEEe---CCCcEEEEeCCCCc---eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           81 VSSS---LDATCKVWDLGSGI---LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 ~s~~---~d~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      ++++   .++.+.+||..-..   ++. .-|.+.++++++-|....|++|+.+|.|++||++.....+          .+
T Consensus      2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h----------~~ 2374 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH----------TF 2374 (2439)
T ss_pred             hccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH----------Hh
Confidence            7654   57899999965432   233 5689999999999999999999999999999999543322          22


Q ss_pred             eccCCceEEEEec-CCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370          155 KGHNGSITALAFS-ASHLISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       155 ~~~~~~i~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      +.         ++ .+.+++|+..|.++||++.....++++.
T Consensus      2375 ~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 QA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hh---------hhhhheeeccCcccceEEEEccccchhhcCc
Confidence            11         33 2239999999999999999888887775

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=6.3e-07  Score=79.35  Aligned_cols=175  Identities=13%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             eecCCCCE-EEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            2 VFSDDGFL-LISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         2 ~~s~dg~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      .|||||+. ++..+.+   ..|.++|+.+                           +.. ..+....+......|+|++.
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------------g~~-~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------------GKK-EKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCC---------------------------CcE-EEEecCCCcEEeeEECCCCC
Confidence            68999984 5544433   4577777762                           222 22222344455566866444


Q ss_pred             cEEEEEeCC--CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccce
Q 045370           78 TFFVSSSLD--ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        78 ~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .++++.+.+  ..|.++|+.++.......+........|+|||+.|+..+. .|  .|+++|+..+...           
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-----------  314 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-----------  314 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----------
Confidence            455555444  4577778888775554444433445689999987776653 33  6777777654321           


Q ss_pred             eeeccCCceEEEEecCCe--EEEEe-CC--------CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISAS-ED--------KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~-~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+......  ...|+|++  ++..+ ..        ..|++.|+.++.. ..+... +......|+|||+.++.....
T Consensus       315 rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        315 QVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             eCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence            11111111  24899999  43333 22        3688889888764 344322 233468899999988766543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=9.8e-09  Score=88.64  Aligned_cols=163  Identities=17%  Similarity=0.169  Sum_probs=114.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      +.+-+++++.|.+|++|.+.....                    ...+..+..++..|..+|.++-|.. +...+  ++.
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~Sc  802 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASC  802 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeee-cccee--eec
Confidence            345788999999999999884211                    1123446677899999999999876 33344  455


Q ss_pred             CCcEEEEeCCCCceEEEE----ecC--CceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           86 DATCKVWDLGSGILIQTQ----VYP--QAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~----~~~--~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ||.|.+||.--++.+...    ++.  +.|.|+.- -+...+++| +...+|+++|.+.......+.+.     ...+..
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc-----na~~Pn  876 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVC-----NAPGPN  876 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEec-----cCCCCc
Confidence            899999998777766532    122  22333321 134444444 67899999999987654433222     334556


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK  197 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~  197 (350)
                      ..+.+++..|.|  ++++-.+|.|.+.|.++|..+..+..-
T Consensus       877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence            778999999988  999999999999999999998877543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=5e-08  Score=86.85  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+.+..|+|+||.||.++|..+.+.....            +...+.....-..-.++.+|+..|.-+.|+. +...|
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~------------~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKL   86 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDL------------NKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKL   86 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcc------------cccccccccccchhhhhccCcceEEEEEecc-ccccc
Confidence            4688899999999999999999887421111            0000001111223346789999999999966 45668


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      -|...+|.|.+|-+-.|.....   -...+.|.+++|+.+|..|+..-.||.|.+=.+.
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            8889999999999988765443   2355679999999999999888888887765443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=3e-08  Score=77.73  Aligned_cols=177  Identities=18%  Similarity=0.246  Sum_probs=107.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccc-cccc---------------c------ccEEEeeccccccceeeeccc
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHH-SDQL---------------D------QRLIEMELRSLRSLLHYSLEH   63 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~---------------~------~~~~~~~~~~~~~~~~~~~~h   63 (350)
                      -++.++++..||.+.+++.+.........+.. .+..               .      +..+....+.......... -
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~  178 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-A  178 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-c
Confidence            35679999999999999988622211111111 1100               0      1111111111111111111 2


Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      .+.|.+++-+|...+++++|+.||.+-+||.++.....+  ..|+.++.-+-|+| ++..|++++.||.+..||..+.-.
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l  258 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL  258 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE
Confidence            234888888887788899999999999999998855544  34899999999999 677999999999999999874211


Q ss_pred             cc--------ccccccccce-------eeeccCCceEEEEecCCeEEEEeCCCcEEEEE
Q 045370          141 ED--------HFIVGEDQHS-------VLKGHNGSITALAFSASHLISASEDKTVCLWD  184 (350)
Q Consensus       141 ~~--------~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd  184 (350)
                      ..        .++. ..+++       .+......|+.+......|++|+.-+.|++++
T Consensus       259 ~i~~~~s~~s~WLs-gD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  259 SISNQASVISSWLS-GDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EecCcccccccccc-CCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            10        0000 01111       11122234555555555588888777777764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=2e-08  Score=81.80  Aligned_cols=137  Identities=16%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-----ceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCC
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-----ILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  136 (350)
                      ....|.++.|.. .++++..|+.+|.|...|++.+     .+...+-|+..|+++..-. ++.+|.+.+.+|.|.+||++
T Consensus       251 sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            456777777754 4578999999999999999864     5666788999999998776 78899999999999999999


Q ss_pred             ccccccccccccccceeeeccCCceEEEEe--cCC-e-EEEEeCCCcEEEEECCCceEEEEeccCCC----ceeEEEEE
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAF--SAS-H-LISASEDKTVCLWDVTRRVSIRRFNHKKG----VVTNLVVI  207 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~l~~~  207 (350)
                      ..+.       ...+....+|...-.-+-+  .+. + +++++.|...|||.++.+.++.+++-...    .+.+++|.
T Consensus       330 ~~K~-------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  330 ATKC-------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             hhhc-------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            5432       2235566777554433333  233 3 88899999999999999999998863322    34455553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.9e-06  Score=71.13  Aligned_cols=199  Identities=13%  Similarity=0.149  Sum_probs=122.6

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC----------ceE
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS----------VTG   69 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~   69 (350)
                      |+++++|++|+++.. -|.|.++-++...               .+.         .......|.+.          +..
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG---------------~l~---------~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADG---------------SLQ---------PVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCC---------------ccc---------cceeeeecCCCCCCccccCCccce
Confidence            578899999998886 5789998886311               110         01111122222          556


Q ss_pred             EEEeeCCCcEEEEEeC-CCcEEEEeCCCCceEEE----EecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCcc--ccc
Q 045370           70 LLTISGGTTFFVSSSL-DATCKVWDLGSGILIQT----QVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFL--LLE  141 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~  141 (350)
                      ..+.| +++++++... --.|.+|++..|.+...    ++.....+.|.|+|++++.++.++ +++|-+|.....  +..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            66655 6666666532 23599999998765443    345667899999999999887664 799999998863  221


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeC--CCcEEEEECCC--ceE--EEEeccCCCceeEEEEEccCCeEE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASE--DKTVCLWDVTR--RVS--IRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~--dg~v~iwd~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                      ........+ ..+ .......+|.++|+| ++-+|.  ...|.+|.+..  +++  +.....+....+.+.|+|.+++|+
T Consensus       229 ~lQ~i~tlP-~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         229 ELQTIDTLP-EDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             EeeeeccCc-ccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            111111000 011 123567889999999 444443  34677776643  332  222233444578999999999999


Q ss_pred             eeecCccccccc
Q 045370          215 EVSNCQRKLKKD  226 (350)
Q Consensus       215 ~~~~~~~~~~~~  226 (350)
                      ++..+...+.+.
T Consensus       307 aa~q~sd~i~vf  318 (346)
T COG2706         307 AANQKSDNITVF  318 (346)
T ss_pred             EEccCCCcEEEE
Confidence            888775444333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.83  E-value=6.3e-08  Score=78.86  Aligned_cols=83  Identities=23%  Similarity=0.274  Sum_probs=70.3

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceE--EEEecCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILI--QTQVYPQAVTAIAFHPGEQLLFAGSIDGRIF  131 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  131 (350)
                      ..++..+.+|.+.+.++.|.+ ....+.+|..|..|.+||+..++-.  ....|...|..++.-+.-+.+++++.||.|.
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             CceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence            456677899999999999977 5578999999999999999765433  3367888999999888889999999999999


Q ss_pred             EEeCCc
Q 045370          132 VSPLKF  137 (350)
Q Consensus       132 i~d~~~  137 (350)
                      +|+.+.
T Consensus       266 ~w~mn~  271 (404)
T KOG1409|consen  266 VWNMNV  271 (404)
T ss_pred             EEeccc
Confidence            999865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.83  E-value=1.6e-08  Score=90.07  Aligned_cols=201  Identities=17%  Similarity=0.237  Sum_probs=138.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc----------------------cccEEEeecccccccee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL----------------------DQRLIEMELRSLRSLLH   58 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~   58 (350)
                      +..+|.|+-+|.++.-| +.+-|+..+..+...+.+.....                      ...+|.+...+....-.
T Consensus        30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef  108 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF  108 (1081)
T ss_pred             eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence            35677888788887766 55667776555544443332211                      11233333333344445


Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      .+-+|...|+.+-|.+.....+++++.|-.|..||+++.. .+.... -......+.|+.....+.+.+....|++||.+
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            6678999999999999888999999999999999999854 333322 34556789999866667777778899999999


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCC
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~  211 (350)
                      .         ...+...+++|...|+.++|+.-.   +.+++.||+|+.||......... ......+|..-.+.|-|.
T Consensus       189 ~---------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  189 K---------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             C---------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            6         455566788899999999998654   99999999999999875332111 112344566666666543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.82  E-value=1.5e-06  Score=85.39  Aligned_cols=159  Identities=8%  Similarity=-0.068  Sum_probs=99.0

Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------cCCceeEEEEcCCCcEEEE-EccCCeE
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---------------YPQAVTAIAFHPGEQLLFA-GSIDGRI  130 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~-~~~dg~i  130 (350)
                      ..++++.+.++.++++.+.++.|++||..++.......               .-.....++++|++..|++ -+.++.|
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            45788877677788888889999999998775432211               0123567999999985554 4567999


Q ss_pred             EEEeCCcccccccccc---ccccceeee--------ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--
Q 045370          131 FVSPLKFLLLEDHFIV---GEDQHSVLK--------GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--  195 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~---~~~~~~~~~--------~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--  195 (350)
                      ++||+.++........   .......+-        ..-.....+++++++  +++-+.++.|++||..++.......  
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999886432100000   000000000        011234688999988  6667788999999998876653321  


Q ss_pred             -----------cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          196 -----------HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       196 -----------~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                                 +.......++++++|+++++- .....++.+
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD-t~Nn~Irvi  885 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVAD-TNNSLIRYL  885 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEE-CCCCEEEEE
Confidence                       112246789999999876644 443333333

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=85.87  Aligned_cols=156  Identities=22%  Similarity=0.225  Sum_probs=120.0

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC--CCcEEEEEccCCeEE
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP--GEQLLFAGSIDGRIF  131 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  131 (350)
                      +...+..|.+.|..+.|+. .+..+++|+.|..|.+||...+.....+  +|...|....|-|  +...+++++.||.++
T Consensus       134 l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3456788999999999976 6789999999999999999998877765  4777788888888  456899999999999


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEe---ccCCC---cee
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRF---NHKKG---VVT  202 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~---~v~  202 (350)
                      +=.+....       ..+....+..|.++|..++.-|+.   |.+++.|+.+.-+|++.+.+...+   ..+..   .+.
T Consensus       213 ~s~i~~t~-------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  213 VSEILETG-------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             eeeecccc-------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence            87665322       122233566799999999998877   999999999999999987654333   22333   577


Q ss_pred             EEEEEccCC-eEEeeecC
Q 045370          203 NLVVIRQSS-LLSEVSNC  219 (350)
Q Consensus       203 ~l~~~~~~~-~l~~~~~~  219 (350)
                      .++..|... .+++++.+
T Consensus       286 ~Ia~~P~nt~~faVgG~d  303 (559)
T KOG1334|consen  286 TIAVDPRNTNEFAVGGSD  303 (559)
T ss_pred             eEecCCCCccccccCChh
Confidence            888999877 55544444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=2.1e-08  Score=80.63  Aligned_cols=193  Identities=15%  Similarity=0.235  Sum_probs=120.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccc------------cCCce
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEH------------KSSVT   68 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~   68 (350)
                      |.|...|.||++|...|.|.+|.-+... .+.                     ...+..+++|            ...|.
T Consensus        32 Vefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------ykf~teFQshe~EFDYLkSleieEKin   89 (460)
T COG5170          32 VEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------YKFFTEFQSHELEFDYLKSLEIEEKIN   89 (460)
T ss_pred             EEeccccceEeecCCCceEEEeeccccc-ccc---------------------hhhhhhhcccccchhhhhhccHHHHhh
Confidence            3577889999999999999999766311 000                     0111112222            35678


Q ss_pred             EEEEeeCCC-cEEEEEeCCCcEEEEeCCCCce-------------------------------------EE-------EE
Q 045370           69 GLLTISGGT-TFFVSSSLDATCKVWDLGSGIL-------------------------------------IQ-------TQ  103 (350)
Q Consensus        69 ~~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~-------------------------------------~~-------~~  103 (350)
                      .+.|+.+.+ ..++..+.|.+|++|.+.....                                     +.       .-
T Consensus        90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN  169 (460)
T COG5170          90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN  169 (460)
T ss_pred             heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence            888887654 4566667899999998753210                                     00       01


Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcE
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTV  180 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v  180 (350)
                      .|+..+.++.|+.+...++++. |-.|.+|++......-  .+..........-...|++..|+|..   +.-.+..|.|
T Consensus       170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             cceeEeeeeeecCchheeeecc-ceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            1445688899998888888775 7889999987432110  00000000111123468888999976   6677789999


Q ss_pred             EEEECCCceEE------EE----------eccCCCceeEEEEEccCCeEEeeec
Q 045370          181 CLWDVTRRVSI------RR----------FNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       181 ~iwd~~~~~~~------~~----------~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ++-|++...+.      ..          +..-...|..+.|+++|+++++-+.
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence            99999843221      11          1112346888999999999985443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.80  E-value=1.6e-07  Score=76.64  Aligned_cols=189  Identities=19%  Similarity=0.304  Sum_probs=137.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.+.++...|+.|-..|++.-+.+..                       .-+.....+....|...+..+.|.- ..+++
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~se-----------------------dfnkm~~~r~~~~h~~~v~~~if~~-~~e~V  129 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSE-----------------------DFNKMTFLKDYLAHQARVSAIVFSL-THEWV  129 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhh-----------------------hhhhcchhhhhhhhhcceeeEEecC-CceeE
Confidence            35667778888998899988887651                       1113445566788999999998855 55789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++.+.|..+.---.+.+..+..+.......++.+.-.  +.+.|...|.|..-.+...        ....+..+.+|.+.
T Consensus       130 ~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~--------~~~~i~~~~~h~~~  199 (404)
T KOG1409|consen  130 LSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQN--------GCQLITTFNGHTGE  199 (404)
T ss_pred             EEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeec--------CCceEEEEcCcccc
Confidence            9999998876655666655544433333333333322  6677777777776655421        34556688999999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ++++.|.|..  |.+|..|..+.+||+--++ ....+.+|...|..++..+.-+.+.+++.|+.+.
T Consensus       200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  200 VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence            9999999977  9999999999999997544 3455678899999999888888888788776543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=8.6e-07  Score=76.90  Aligned_cols=118  Identities=13%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccccccccccccceeeeccCCceEEE
Q 045370           87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      .++.+.++....+...+.-.++|.++.|+|+++.++++.  .--.+.+||++-.           +  .+.-..++-+++
T Consensus       251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----------~--v~df~egpRN~~  317 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----------P--VFDFPEGPRNTA  317 (566)
T ss_pred             ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----------E--eEeCCCCCccce
Confidence            368888888666666677889999999999998877654  4578999998732           1  333456777899


Q ss_pred             EecCCe--EEEEeC---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          165 AFSASH--LISASE---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       165 ~~~~~~--l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      -|+|.|  ++.++.   -|.+-|||+.+.+.+..+....  -+-+.|+|||++++++...
T Consensus       318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence            999999  444443   4899999999999998887543  3557899999999988764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=1.1e-06  Score=86.36  Aligned_cols=177  Identities=11%  Similarity=0.079  Sum_probs=107.0

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+| ++.++++.+.++.|++||..+.....-  .+.     +....     ..... .....-....++++++.++.+
T Consensus       688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~--~G~-----G~~~~-----~~g~~-~~~~~~~~P~GIavspdG~~L  754 (1057)
T PLN02919        688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF--SGD-----GYERN-----LNGSS-GTSTSFAQPSGISLSPDLKEL  754 (1057)
T ss_pred             EEEecCCCeEEEEECCCCeEEEEECCCCeEEEE--ecC-----Ccccc-----CCCCc-cccccccCccEEEEeCCCCEE
Confidence            46888 566677777889999999874211100  000     00000     00000 001112346778887755556


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe--------------c--------CCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV--------------Y--------PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~--------------~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      +++-+.++.|++||+.++.......              .        -.....++++++|+.+++-+.++.|++||..+
T Consensus       755 YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        755 YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence            7777788999999998765322110              0        01246889999999888888899999999976


Q ss_pred             ccccccccccc---ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceE
Q 045370          138 LLLEDHFIVGE---DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVS  190 (350)
Q Consensus       138 ~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~  190 (350)
                      +..........   ..-....+.-.....+++++++  +++-+.++.|++||+.+++.
T Consensus       835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            54332110000   0000112233467889999998  66777889999999998765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.75  E-value=1.3e-05  Score=68.48  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CCcEEEEEccCCeEEEEeCCccccccccccccccceeee-------ccCCceEEEEecCCe--EEE-Ee---------CC
Q 045370          117 GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK-------GHNGSITALAFSASH--LIS-AS---------ED  177 (350)
Q Consensus       117 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--l~s-~~---------~d  177 (350)
                      +|+++++... |.|.+.|+........     .....+.       -..+.+.-++++|++  ++. ..         ..
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~-----~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFL-----PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceec-----ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence            7777777665 8888888654322111     1111111       123444459999987  444 31         12


Q ss_pred             CcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCc
Q 045370          178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQ  220 (350)
Q Consensus       178 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~  220 (350)
                      +.|.++|..+++.+..+.. ...+..++++||++ +|++.+...
T Consensus       279 ~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s  321 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGD  321 (352)
T ss_pred             CEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCC
Confidence            5799999999999999873 45789999999999 777666443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.72  E-value=4.1e-06  Score=73.70  Aligned_cols=111  Identities=16%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             CceEEEEeeCCCcEEEEE----eCCCc----EEEEeCCCCceEE----EEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370           66 SVTGLLTISGGTTFFVSS----SLDAT----CKVWDLGSGILIQ----TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS  133 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~----~~d~~----v~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  133 (350)
                      ...++.|+...+..+.|.    +.+|.    -.+|++..++...    .++.+..+.+++++|+...++.|+.||.|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            346667766555556553    33443    3567776554332    36688999999999999999999999999999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR  188 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~  188 (350)
                      |.....            .....+.-.++.++|+|+|  +++|+..|.+.+||+.-.
T Consensus       287 D~~~~~------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  287 DTTRGV------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCe------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            987431            1233445668899999999  888999999999998643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.65  E-value=7.2e-06  Score=70.08  Aligned_cols=135  Identities=12%  Similarity=0.018  Sum_probs=104.6

Q ss_pred             EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-eEEEEeCCcccccccccccccc
Q 045370           72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      |...++++++..|. |...+.+...+-.+ .+++.+.|.-..+..++.-++.|..|| .+-+||.+.++..         
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------  395 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------  395 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------
Confidence            34456788888874 66777776655444 356677788888888888999999998 9999999865432         


Q ss_pred             ceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          151 HSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                        .+...-+.|.++..+|+|  ++.+.....|.+.|+.++.....-....+-|+.++|||+++++|-+--+
T Consensus       396 --r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         396 --RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             --EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence              455666889999999998  7777777889999999987655444556789999999999999976554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=3e-05  Score=63.99  Aligned_cols=210  Identities=18%  Similarity=0.087  Sum_probs=122.5

Q ss_pred             eecC-CCCEEEEEeCCCcEEEEeCcccccccccccc---cccc-ccccEEEeecc-------cccc--ceeeec--c-cc
Q 045370            2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMH---HSDQ-LDQRLIEMELR-------SLRS--LLHYSL--E-HK   64 (350)
Q Consensus         2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-------~~~~--~~~~~~--~-h~   64 (350)
                      .|.+ +|.++++--..+.|..|+..+..........   .... .++.++.....       ....  .+....  . ..
T Consensus         6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen    6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred             EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCccc
Confidence            5787 6777777777889999988764432211111   1111 12222222111       1111  111111  1 34


Q ss_pred             CCceEEEEeeCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeC
Q 045370           65 SSVTGLLTISGGTTFFVSSSLD--------ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPL  135 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~  135 (350)
                      ...+.+++.+ ++.+.++....        |.|..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..|++
T Consensus        86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence            5567787766 56666665543        457777777 56555555556678999999998776 5566789999998


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe-EE-EEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE-ccCCe
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSL  212 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~  212 (350)
                      ......-   ........+....+..-.+++..+| |. +....+.|.++|.. |+.+..+......+++++|. ++.+.
T Consensus       164 ~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~  239 (246)
T PF08450_consen  164 DADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKT  239 (246)
T ss_dssp             ETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSE
T ss_pred             cccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCE
Confidence            6322100   0011111222222457889999998 44 44468899999998 88888887555689999995 66565


Q ss_pred             EEeee
Q 045370          213 LSEVS  217 (350)
Q Consensus       213 l~~~~  217 (350)
                      |+.++
T Consensus       240 L~vTt  244 (246)
T PF08450_consen  240 LYVTT  244 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=9.9e-08  Score=82.60  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-------ceEEE-EecCCceeEEEEcCCCcEEEEEccC
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-------ILIQT-QVYPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                      .+..+.+|...|..++.... .+-+++++.|++|++|.++..       .+..+ ..|..+|.++.|-.+.++++++  |
T Consensus       727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            34567899999999987664 455889999999999998742       13333 3589999999998888887766  8


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-----cCCCc
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-----HKKGV  200 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~  200 (350)
                      |.|++||.-.+.........     .-.+..+.|.|+.--...  ++.++...+|+++|.+.+.-...+.     +..+.
T Consensus       804 ~giHlWDPFigr~Laq~~da-----pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDA-----PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             CcceeecccccchhHhhhcC-----cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            99999997644322111000     112233445554432222  4444788999999999877555543     34456


Q ss_pred             eeEEEEEccCCeEEeeecC
Q 045370          201 VTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       201 v~~l~~~~~~~~l~~~~~~  219 (350)
                      +.+++.-|.|+.++++-+.
T Consensus       879 ~R~iaVa~~GN~lAa~LSn  897 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSN  897 (1034)
T ss_pred             eeEEEeccCcchhhHHhcC
Confidence            8999999999998866554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=4.2e-06  Score=72.73  Aligned_cols=135  Identities=16%  Similarity=0.206  Sum_probs=93.3

Q ss_pred             ccccCCceEEEEeeCCCcEEEE-EeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCC
Q 045370           61 LEHKSSVTGLLTISGGTTFFVS-SSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLK  136 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~  136 (350)
                      ....++|.++.|++.+..+.+. |-.=-.+.++|++ +.++..+. .++-+++-|+|.|++|+.++-   .|.+-+||+.
T Consensus       267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            3457999999998866555444 3345678999988 55555554 456788999999999888765   3899999998


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      +.+...          .+..  ...+-+.|+|+|  ++|+..      |+.++||+.. |..+....- ...+..+.|-|
T Consensus       345 n~K~i~----------~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~sEL~qv~W~P  410 (566)
T KOG2315|consen  345 NRKLIA----------KFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KSELLQVEWRP  410 (566)
T ss_pred             chhhcc----------cccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hHhHhheeeee
Confidence            644322          2222  234568999999  666553      6889999986 555554331 22577888876


Q ss_pred             cCC
Q 045370          209 QSS  211 (350)
Q Consensus       209 ~~~  211 (350)
                      ...
T Consensus       411 ~~~  413 (566)
T KOG2315|consen  411 FND  413 (566)
T ss_pred             cCC
Confidence            543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=1e-07  Score=77.77  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=100.3

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++.+.+-.|-+-|+.+|.. +.+...+.|.++.|...++.++.|+.+|.|..+|++.......     .+. ..-.|...
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-----~~a-~rlyh~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-----WCA-QRLYHDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-----cce-EEEEcCcc
Confidence            4555677788889887743 3345778899999999999999999999999999996532221     111 22358888


Q ss_pred             eEEEEecC---CeEEEEeCCCcEEEEECCCceE---EEEeccCCCceeEEE--EEccCCeEEeeecC--cccccccc
Q 045370          161 ITALAFSA---SHLISASEDKTVCLWDVTRRVS---IRRFNHKKGVVTNLV--VIRQSSLLSEVSNC--QRKLKKDR  227 (350)
Q Consensus       161 i~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~--~~~~~~~l~~~~~~--~~~~~~~~  227 (350)
                      |+++..-.   ..|++.+.+|+|.+||++.-++   +.++.+|...-.-+-  ..+....+++++.|  .++|.+.+
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence            99887544   3399999999999999998666   888888866443333  34556677765555  45665553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.59  E-value=1.6e-07  Score=52.92  Aligned_cols=35  Identities=37%  Similarity=0.650  Sum_probs=32.2

Q ss_pred             cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370          150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWD  184 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd  184 (350)
                      ++..+.+|...|++++|+|++  |++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            345888999999999999998  99999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=2.1e-06  Score=78.76  Aligned_cols=142  Identities=15%  Similarity=0.086  Sum_probs=103.0

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEcc---------CCeEEEE
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSI---------DGRIFVS  133 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~  133 (350)
                      ...|.-+..   ++.++.+|...|+|.+-|.++.+.++++. |.+.+..+..  .|+.|++++.         |..|++|
T Consensus       177 a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  177 ASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             CCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence            334555544   56789999999999999999999999975 8888887665  6888888864         5678999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC---c-eEEEEeccCCCceeEEEE
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR---R-VSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~---~-~~~~~~~~~~~~v~~l~~  206 (350)
                      |++.......          +.-+-+ ..-+.|+|..   +++++..|...+-|..+   . ..+..+......+..+++
T Consensus       252 DLRmmral~P----------I~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi  320 (1118)
T KOG1275|consen  252 DLRMMRALSP----------IQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI  320 (1118)
T ss_pred             hhhhhhccCC----------cccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence            9996543322          111222 2456788876   89999999999999433   2 123333434455999999


Q ss_pred             EccCCeEEeeecCcc
Q 045370          207 IRQSSLLSEVSNCQR  221 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~  221 (350)
                      +++++.++.+..++.
T Consensus       321 Ssn~~alafgd~~g~  335 (1118)
T KOG1275|consen  321 SSNGDALAFGDHEGH  335 (1118)
T ss_pred             cCCCceEEEecccCc
Confidence            999999998877654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.55  E-value=3.1e-05  Score=66.79  Aligned_cols=141  Identities=7%  Similarity=0.052  Sum_probs=91.6

Q ss_pred             CCceEEEEeeC-CCcEEEE-----EeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-----------c
Q 045370           65 SSVTGLLTISG-GTTFFVS-----SSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-----------I  126 (350)
Q Consensus        65 ~~v~~~~~~~~-~~~~l~s-----~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------~  126 (350)
                      ..+....++|. ++..|+.     .+.++.+++|.+..+..+.+.. ....-..+.|++.|+++++-.           .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            45566667664 2333332     5678899999999887776633 222334678999888776532           1


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCcee
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVT  202 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  202 (350)
                      ...++++++....           +.....-.++|...+|.|.+    +++|-.+..+.++|++.. +...+.  .+.=.
T Consensus       254 esnLyl~~~~e~~-----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN  319 (561)
T COG5354         254 ESNLYLLRITERS-----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN  319 (561)
T ss_pred             cceEEEEeecccc-----------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence            3456777766321           11222456899999999876    666778999999999876 433332  34445


Q ss_pred             EEEEEccCCeEEeeecC
Q 045370          203 NLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~  219 (350)
                      .+.|+|.+++++.++-+
T Consensus       320 T~~fsp~~r~il~agF~  336 (561)
T COG5354         320 TIFFSPHERYILFAGFD  336 (561)
T ss_pred             cccccCcccEEEEecCC
Confidence            56688888877776654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=5.4e-07  Score=70.87  Aligned_cols=72  Identities=31%  Similarity=0.480  Sum_probs=60.1

Q ss_pred             CceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEE
Q 045370          107 QAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCL  182 (350)
Q Consensus       107 ~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~i  182 (350)
                      ..|.+++-+|.. +.+++|+.||.+-+||.++..         .+...+..|..+|..+.|+|..   |+++++||.+..
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence            358888999955 466778889999999999643         3334677899999999999976   999999999999


Q ss_pred             EECCC
Q 045370          183 WDVTR  187 (350)
Q Consensus       183 wd~~~  187 (350)
                      ||..+
T Consensus       251 wdas~  255 (319)
T KOG4714|consen  251 WDAST  255 (319)
T ss_pred             EcCCC
Confidence            99875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.1e-05  Score=73.72  Aligned_cols=182  Identities=16%  Similarity=0.228  Sum_probs=123.1

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|++.+..+|.|+.+|.|.+.+-.                            ......+.++...+....|.-....+|+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~   81 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLF   81 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhhcccCceEEE
Confidence            578889999999999999888755                            3444566677666444445554557888


Q ss_pred             EEeCCCc-----EEEEeCCCC------ceE---EEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           82 SSSLDAT-----CKVWDLGSG------ILI---QTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        82 s~~~d~~-----v~vwd~~~~------~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      +.+.|+.     |++|+++.-      .++   +.++     .+.++.+++++.+-..+++|-.+|.|..+.=.-..-  
T Consensus        82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD--  159 (933)
T KOG2114|consen   82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD--  159 (933)
T ss_pred             EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc--
Confidence            8777764     899998642      233   1222     246789999999999999999999999875331110  


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceE-EEEeccCCCceeEEEEEccCC-eEEeee
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVS-IRRFNHKKGVVTNLVVIRQSS-LLSEVS  217 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~-~l~~~~  217 (350)
                          ..........-..+|+.+++..++   ++++. -..|.+|.+....+ ...+..|..++.|..|++... ++++++
T Consensus       160 ----rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  160 ----RGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             ----cccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence                111222233345799999998887   23333 44789999985443 444677788999999998766 555444


Q ss_pred             c
Q 045370          218 N  218 (350)
Q Consensus       218 ~  218 (350)
                      +
T Consensus       235 e  235 (933)
T KOG2114|consen  235 E  235 (933)
T ss_pred             c
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.52  E-value=3.6e-07  Score=51.40  Aligned_cols=37  Identities=30%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEe
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWD   93 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd   93 (350)
                      ++..+.+|...|.+++|.| ++.+|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            4667889999999999977 578999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=7.6e-07  Score=81.58  Aligned_cols=145  Identities=18%  Similarity=0.232  Sum_probs=106.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      .++++|.+|...|+|.+-|..                           ....+..+..|++.|.++..   .|+.|++||
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~---------------------------s~~~iht~~aHs~siSDfDv---~GNlLitCG  234 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPN---------------------------SFETIHTFDAHSGSISDFDV---QGNLLITCG  234 (1118)
T ss_pred             ecCcEEEeecccceEEeecCC---------------------------cCceeeeeeccccceeeeec---cCCeEEEee
Confidence            356777777777888777776                           57778899999999998765   567889887


Q ss_pred             C---------CCcEEEEeCCCCceEEEEecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           85 L---------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        85 ~---------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .         |..|+|||++.-+.+.-+..+....-+.|+|. ...+++++..|...+-|......      ....+..+
T Consensus       235 ~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN------P~~~~~~v  308 (1118)
T KOG1275|consen  235 YSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN------PPAGVKMV  308 (1118)
T ss_pred             cccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC------CccceeEE
Confidence            6         45689999998776665555555567788884 45788888899999988432211      11112233


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370          155 KGHNGSITALAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      ......+..+.+++++  ++.|..+|.|.+|--
T Consensus       309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            3445569999999998  999999999999963

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=7.6e-06  Score=71.23  Aligned_cols=106  Identities=10%  Similarity=0.026  Sum_probs=69.0

Q ss_pred             CCceeEEEEcCCCcEEEEEccC---CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEE---EeCC
Q 045370          106 PQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS---ASED  177 (350)
Q Consensus       106 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s---~~~d  177 (350)
                      ...|...+|.|.|+.+++.+.+   .++.+|.+.+...      ....+..+..  ...+.+.|+|.|  ++.   +|..
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~------~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~  516 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK------KPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRR  516 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCC------chhhhhhhcc--cccceEEEcCCCcEEEEEEecccc
Confidence            3567888999999988776543   5788888774111      1112222322  457889999999  332   3467


Q ss_pred             CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          178 KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       178 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      |.+.++|+....+...-.......+.+.|.|.|+|+++++..
T Consensus       517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             cceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence            899999998422222222222456788999999999987764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.52  E-value=7.2e-05  Score=61.89  Aligned_cols=188  Identities=17%  Similarity=0.195  Sum_probs=114.9

Q ss_pred             eecCCCCEEEEEe-----CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            2 VFSDDGFLLISGS-----DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         2 ~~s~dg~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      .||+||++|++.=     ..|.|-|||....                          ...+..+..|.-....+.+.+ +
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--------------------------~~ri~E~~s~GIGPHel~l~p-D  109 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARG--------------------------YRRIGEFPSHGIGPHELLLMP-D  109 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCC--------------------------cEEEeEecCCCcChhhEEEcC-C
Confidence            6999999998854     3589999999831                          233334444544455555544 3


Q ss_pred             CcEEEEE------------------eCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCC-----
Q 045370           77 TTFFVSS------------------SLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDG-----  128 (350)
Q Consensus        77 ~~~l~s~------------------~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg-----  128 (350)
                      +..|+.+                  .-+-++.+.|..+|+++....     |.-.++.++++++|..++..-..|     
T Consensus       110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~  189 (305)
T PF07433_consen  110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA  189 (305)
T ss_pred             CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence            3333332                  223456677788888877633     455799999999987766654333     


Q ss_pred             --eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCCCceeE
Q 045370          129 --RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN  203 (350)
Q Consensus       129 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  203 (350)
                        .|-+++....  ....   .-+......-.+.+-+|++++++  + +|+-..+.+.+||..+++.+.....  ..+..
T Consensus       190 ~PLva~~~~g~~--~~~~---~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cG  262 (305)
T PF07433_consen  190 PPLVALHRRGGA--LRLL---PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACG  262 (305)
T ss_pred             CCeEEEEcCCCc--ceec---cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceee
Confidence              2333332210  0000   00000122345789999999997  4 4555778999999999999887653  34667


Q ss_pred             EEEEccCCeEEeeecCcccccc
Q 045370          204 LVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ++-.+++ +++ ++..+.++..
T Consensus       263 va~~~~~-f~~-ssG~G~~~~~  282 (305)
T PF07433_consen  263 VAPTDDG-FLV-SSGQGQLIRL  282 (305)
T ss_pred             eeecCCc-eEE-eCCCccEEEc
Confidence            7777777 555 5555555544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.50  E-value=8e-05  Score=61.46  Aligned_cols=145  Identities=16%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec------CCceeEEEEcCCCcEEEEEccC--------CeEEE
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY------PQAVTAIAFHPGEQLLFAGSID--------GRIFV  132 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d--------g~i~i  132 (350)
                      ..++++..+++.+ +.+.. +.+.++|+.+++.......      ....+.++++|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677776456554 44444 4456669999876555432      2458899999999977765433        45766


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCC--c-----eEEEEeccCCCcee
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTR--R-----VSIRRFNHKKGVVT  202 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~--~-----~~~~~~~~~~~~v~  202 (350)
                      ++.. +..           ..+...-...+.|+|+|++  | ++-+..+.|..|++..  .     +.+..+....+..-
T Consensus       120 ~~~~-~~~-----------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD  187 (246)
T PF08450_consen  120 IDPD-GKV-----------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD  187 (246)
T ss_dssp             EETT-SEE-----------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred             ECCC-CeE-----------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence            6665 221           1222334567899999998  4 5666788899999853  2     12222332233578


Q ss_pred             EEEEEccCCeEEeeecCcccccc
Q 045370          203 NLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .+++..+|++.++....++++.+
T Consensus       188 G~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  188 GLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             EEEEBTTS-EEEEEETTTEEEEE
T ss_pred             cceEcCCCCEEEEEcCCCEEEEE
Confidence            89999999988866555655544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.49  E-value=2.9e-06  Score=68.58  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=102.7

Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce----EEEEec-----CCceeEEEEcCCC-cEEEEEccCCe
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL----IQTQVY-----PQAVTAIAFHPGE-QLLFAGSIDGR  129 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~  129 (350)
                      ...|.-.|.++.+.+ +...++++ .|-.|.+|++..-..    +-.-+|     ..-|++..|+|.. +.+.-.+..|.
T Consensus       168 aNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         168 ANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             cccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            367888999999976 45555554 578899999874321    111222     2358899999954 45556677899


Q ss_pred             EEEEeCCcccccccc------ccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCC---
Q 045370          130 IFVSPLKFLLLEDHF------IVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKK---  198 (350)
Q Consensus       130 i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~---  198 (350)
                      |++-|++...+....      ...+....-+.+....|..+.|+++| ++.+-.--+|+|||.+. ..++.++..|.   
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH
Confidence            999999954432211      01111122334455788999999999 55555556899999986 45677775442   


Q ss_pred             ---------Cce---eEEEEEccCCeEEeeecC
Q 045370          199 ---------GVV---TNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       199 ---------~~v---~~l~~~~~~~~l~~~~~~  219 (350)
                               ..|   ..+.|+.+.+.+++|+..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence                     122   346778888888777765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.46  E-value=7.7e-05  Score=63.81  Aligned_cols=183  Identities=14%  Similarity=0.086  Sum_probs=105.6

Q ss_pred             CeecCCCCEEEEEe-C-CCcEEEEeCccccccccccccccc-------------cccccEEEeecccccc-ceeee-ccc
Q 045370            1 MVFSDDGFLLISGS-D-DGMICVWSMTRLLKQTSELMHHSD-------------QLDQRLIEMELRSLRS-LLHYS-LEH   63 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~-~~h   63 (350)
                      +++||||++|+... . +..|.+.|+.+.........+...             ..++.+........+. ..... ..+
T Consensus       110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~  189 (352)
T TIGR02658       110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH  189 (352)
T ss_pred             EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence            36899999998776 3 689999999863322211111100             1122222221111111 11110 011


Q ss_pred             c--CCceEE-EEeeCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEEe--------cCCceeEEEEcCCCcEEEEEc--
Q 045370           64 K--SSVTGL-LTISGGTTFFVSSSLDATCKVWDLGSGI-----LIQTQV--------YPQAVTAIAFHPGEQLLFAGS--  125 (350)
Q Consensus        64 ~--~~v~~~-~~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~--------~~~~v~~~~~~~~~~~l~~~~--  125 (350)
                      .  .++..= .|.+.++.++..... |+|.+.|+....     ....+.        .++...-++++|+++.+++..  
T Consensus       190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~  268 (352)
T TIGR02658       190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ  268 (352)
T ss_pred             CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence            1  111000 234435666555554 999999965432     222221        223344599999999888843  


Q ss_pred             --------cCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEe-CCCcEEEEECCCceEEEE
Q 045370          126 --------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISAS-EDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       126 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~-~dg~v~iwd~~~~~~~~~  193 (350)
                              ..+.|.++|..+.+...          .+.. ...+..++++|++   |++.+ .++.|.++|..+++.+.+
T Consensus       269 ~~~~thk~~~~~V~ViD~~t~kvi~----------~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       269 RAKWTHKTASRFLFVVDAKTGKRLR----------KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CccccccCCCCEEEEEECCCCeEEE----------EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence                    22579999988654332          3322 3478899999998   55555 678899999999999999


Q ss_pred             ec
Q 045370          194 FN  195 (350)
Q Consensus       194 ~~  195 (350)
                      +.
T Consensus       338 i~  339 (352)
T TIGR02658       338 VN  339 (352)
T ss_pred             ec
Confidence            84

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.46  E-value=1.2e-06  Score=72.89  Aligned_cols=87  Identities=18%  Similarity=0.172  Sum_probs=72.3

Q ss_pred             cceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370           55 SLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFV  132 (350)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  132 (350)
                      .......+|-.-+..+++++ ++.+++++..|..|++-.+..-..+..  ++|..-|..++.-++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            44455679999999999976 668999999999999988876666655  579999999999754 45899999999999


Q ss_pred             EeCCccccccc
Q 045370          133 SPLKFLLLEDH  143 (350)
Q Consensus       133 ~d~~~~~~~~~  143 (350)
                      ||+.+++..+.
T Consensus       220 Wd~~sgk~L~t  230 (390)
T KOG3914|consen  220 WDITSGKLLDT  230 (390)
T ss_pred             EecccCCcccc
Confidence            99998876643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.4e-06  Score=73.68  Aligned_cols=180  Identities=17%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC-
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL-   85 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-   85 (350)
                      .+++.+++.||.++.|.-..                        -.....+..+..|...|.+++.+. ++.++.|++. 
T Consensus        20 a~fiiqASlDGh~KFWkKs~------------------------isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~   74 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSR------------------------ISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDP   74 (558)
T ss_pred             hheEEeeecchhhhhcCCCC------------------------ccceeehhhhHHHHHHHHhhhccc-cceeEeeccCc
Confidence            46889999999999997551                        012344566778889999887744 7788888777 


Q ss_pred             CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc----EEEEE-ccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           86 DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ----LLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      |..++++|+.+-..+.-+........+.|.....    .+++. ..+|.+.++|-....+        +....-.-|..+
T Consensus        75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sP  146 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSP  146 (558)
T ss_pred             ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCc
Confidence            9999999999876665554444334444433222    44443 3569999999875322        222344568999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCC------ceEE---------EEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTR------RVSI---------RRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~------~~~~---------~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      |.++.+++.+  +++....|.|.-|....      ....         ..+....+...++.|+|++..+.+-+.+
T Consensus       147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            9999999988  88888889999998762      1111         1222245678999999999999877654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2e-05  Score=65.98  Aligned_cols=69  Identities=12%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|||..+ ++..++.+.+|+|.|++                           +......+..| ..+++++|.-++.++
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dle---------------------------t~~~vssy~a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLE---------------------------TSCVVSSYIAY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecc---------------------------cceeeeheecc-CCceeeeeccCCcce
Confidence            57999877 78899999999999999                           45666666677 899999999888899


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 045370           80 FVSSSLDATCKVWDLGSG   97 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~   97 (350)
                      ++.|...|.|.+||++..
T Consensus       251 IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eEEeccCceEEEEEccCC
Confidence            999999999999999853

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=3.2e-06  Score=71.60  Aligned_cols=165  Identities=13%  Similarity=0.043  Sum_probs=108.7

Q ss_pred             eecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC---
Q 045370            2 VFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT---   77 (350)
Q Consensus         2 ~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---   77 (350)
                      +.|.||.++.|++. |..++++|+++...                         .....+..-.+.   +.|....+   
T Consensus        60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm-------------------------inmiKL~~lPg~---a~wv~skGd~~  111 (558)
T KOG0882|consen   60 AVSYDGWLFRSVEDPDHSVKVFDVENFDM-------------------------INMIKLVDLPGF---AEWVTSKGDKI  111 (558)
T ss_pred             hccccceeEeeccCcccceeEEEeeccch-------------------------hhhcccccCCCc---eEEecCCCCee
Confidence            45778888999787 99999999983110                         001111111111   22222222   


Q ss_pred             -cEEEEEeCCCcEEEEeCCCCceEE-E--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc-cccccc----ccccc
Q 045370           78 -TFFVSSSLDATCKVWDLGSGILIQ-T--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF-LLLEDH----FIVGE  148 (350)
Q Consensus        78 -~~l~s~~~d~~v~vwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~----~~~~~  148 (350)
                       .+-++.-.++.+.++|-....+.. .  --|..+|.++.+.+.+..+++....|.|..|.... .+....    .....
T Consensus       112 s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e  191 (558)
T KOG0882|consen  112 SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE  191 (558)
T ss_pred             eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc
Confidence             233444567899999976544222 2  23889999999999999999999999999999873 111111    01112


Q ss_pred             ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370          149 DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                      ..+..+........++.|+|++  +.+-+.|..|++++..+++.+..+
T Consensus       192 TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  192 TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            2223444556788999999999  888889999999999998766554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=1.7e-05  Score=71.91  Aligned_cols=183  Identities=14%  Similarity=0.192  Sum_probs=126.9

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--C-cEEEEEeC
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--T-TFFVSSSL   85 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~-~~l~s~~~   85 (350)
                      +||++...|.|.+||..                           .......+..|.+++..++|.+..  . .+++.-..
T Consensus        81 liAsaD~~GrIil~d~~---------------------------~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~  133 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFV---------------------------LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG  133 (1062)
T ss_pred             eEEeccccCcEEEEEeh---------------------------hhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence            67788888999999998                           566677788899999999998643  2 56777777


Q ss_pred             CCcEEEEeCCCCceEEEEecCC-ceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC----
Q 045370           86 DATCKVWDLGSGILIQTQVYPQ-AVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG----  159 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----  159 (350)
                      ..+|.+|+..+|+......... ...|+.++| +.+++..-+..|.+.+-+.-.......   ..+.+.....|..    
T Consensus       134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~---pgk~~qI~sd~Sdl~~l  210 (1062)
T KOG1912|consen  134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV---PGKEFQITSDHSDLAHL  210 (1062)
T ss_pred             CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC---CceeEEEecCccchhhh
Confidence            8899999999999988866444 455699999 677777777788887776543221110   0111111111110    


Q ss_pred             ---------------------ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC--eEE
Q 045370          160 ---------------------SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS--LLS  214 (350)
Q Consensus       160 ---------------------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~  214 (350)
                                           ....++|+|..  ++-......+.++|+.-..++.......+.+.-+.+-|+++  .|+
T Consensus       211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence                                 12234567766  44445567899999999999988887777778888888764  677


Q ss_pred             eeecCcc
Q 045370          215 EVSNCQR  221 (350)
Q Consensus       215 ~~~~~~~  221 (350)
                      +.-.+++
T Consensus       291 clH~nG~  297 (1062)
T KOG1912|consen  291 CLHSNGR  297 (1062)
T ss_pred             EEecCCe
Confidence            6666654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=3.6e-06  Score=74.08  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             cEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE
Q 045370           44 RLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA  123 (350)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  123 (350)
                      .+|++...+......+.......|.+++++| +.+.++.|+.||+|.+||...+.... ....-.++.++|||+|..+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEE
Confidence            3444433333333344456788899999866 66789999999999999998774443 355567889999999999999


Q ss_pred             EccCCeEEEEeCCccc
Q 045370          124 GSIDGRIFVSPLKFLL  139 (350)
Q Consensus       124 ~~~dg~i~i~d~~~~~  139 (350)
                      |+..|.+.+||+.-..
T Consensus       317 ~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  317 GSEQGELQCFDMALSP  332 (545)
T ss_pred             EcCCceEEEEEeecCc
Confidence            9999999999987443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.39  E-value=3.8e-07  Score=81.65  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=111.9

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|+.-...+...+..+.|++||...                          ...++..+.+|...|..+.|...-...+.
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~--------------------------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~  218 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRK--------------------------GSTPLCSLKGHVSSVNSIDFNRFKYSEIM  218 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccC--------------------------CCcceEEecccceeeehHHHhhhhhhhhc
Confidence            3444333333344556788888773                          45677788889999999998765556789


Q ss_pred             EEeCCCcEEEEeCCCCc--eEEEEecCCceeEEEEcCCCc--EEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           82 SSSLDATCKVWDLGSGI--LIQTQVYPQAVTAIAFHPGEQ--LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +++.||+|++||.....  ..+.+....+|..-++-|-|.  ++.---.+..+.+++.++............++..+.||
T Consensus       219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH  298 (1081)
T KOG0309|consen  219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH  298 (1081)
T ss_pred             ccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence            99999999999987543  344455667788888888443  33333334467777766655444333456788899999


Q ss_pred             CCceEEEEecC-----------Ce-EEEEeCCCcEEEEECCC
Q 045370          158 NGSITALAFSA-----------SH-LISASEDKTVCLWDVTR  187 (350)
Q Consensus       158 ~~~i~~~~~~~-----------~~-l~s~~~dg~v~iwd~~~  187 (350)
                      ...|....|-.           +. |++-+.|..+++|-+.+
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99998877742           12 99999999999997753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=0.00013  Score=64.88  Aligned_cols=140  Identities=12%  Similarity=0.003  Sum_probs=87.5

Q ss_pred             CceEEEEeeCCCcEEEEEeC---CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccC--CeEEEEeCCccc
Q 045370           66 SVTGLLTISGGTTFFVSSSL---DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSID--GRIFVSPLKFLL  139 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--g~i~i~d~~~~~  139 (350)
                      ....-.|+|.+...++..+.   +..|.++|+.+++........+......|+|||+.++. .+.+  ..|+++|+..+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            66778887644333443333   35689999998887666556666777889999986654 3333  568888876432


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                      .           ..+..+........|+|+|  |+-.+ ..+  .|+++|+.+++.......  +. ....|+|+|+.++
T Consensus       269 ~-----------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia  334 (419)
T PRK04043        269 L-----------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIV  334 (419)
T ss_pred             E-----------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEE
Confidence            1           1233333333456799999  33333 333  688889988766333221  11 1248999999888


Q ss_pred             eeecC
Q 045370          215 EVSNC  219 (350)
Q Consensus       215 ~~~~~  219 (350)
                      ..+..
T Consensus       335 ~~~~~  339 (419)
T PRK04043        335 YSSRE  339 (419)
T ss_pred             EEEcC
Confidence            66543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.36  E-value=6e-05  Score=66.53  Aligned_cols=133  Identities=14%  Similarity=0.025  Sum_probs=85.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ..++.++.+|.+..||..+|+.+........ ....  ..+..+++++.+|.+..+|..+++......       .+.  
T Consensus       242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------~~~--  309 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND-------ELK--  309 (377)
T ss_pred             CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc-------ccc--
Confidence            4577788899999999999988776553221 1222  256788888899999999998765432110       000  


Q ss_pred             CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ...........+.+++++.+|.|+++|..+++.+.++..+...+..--...+++ |+.++.++.+.
T Consensus       310 ~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~  374 (377)
T TIGR03300       310 YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLY  374 (377)
T ss_pred             CCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEE
Confidence            111222223333488899999999999999999999886554433222223344 44466666544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1.1e-05  Score=72.29  Aligned_cols=189  Identities=14%  Similarity=0.171  Sum_probs=118.2

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++..+++++.|+.-|.+.+|+-..                           +.....-.+....+.++...++...++|
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~---------------------------~~~~~~~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHT---------------------------GEMRKLKNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCc---------------------------hhhhcccccCccceEEEEEecchhHhhh
Confidence            4566789999999999999998762                           2222222222445555555566778899


Q ss_pred             EEeCCCcEEEEeCCCCceEEE-------EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           82 SSSLDATCKVWDLGSGILIQT-------QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .|+..|.|.++-+..+.....       ..|+..|++++|++++..+++|...|.|..-.+....      ........+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~i  166 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ------AFLSKSQEI  166 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh------hhcccccee
Confidence            999999999998876432211       1367889999999999999999999999998887511      011112233


Q ss_pred             eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec--cCCC-ceeEEEEEcc-----CCeEEeeecCcccccc
Q 045370          155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN--HKKG-VVTNLVVIRQ-----SSLLSEVSNCQRKLKK  225 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~-~v~~l~~~~~-----~~~l~~~~~~~~~~~~  225 (350)
                      ..-...|..+.+.... |++...-.  .++++..+. +..+.  .-.+ .-...+|-|.     ...|+++--..|+|..
T Consensus       167 l~~ds~IVQlD~~q~~LLVStl~r~--~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWea  243 (726)
T KOG3621|consen  167 LSEDSEIVQLDYLQSYLLVSTLTRC--ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEA  243 (726)
T ss_pred             eccCcceEEeecccceehHhhhhhh--heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEe
Confidence            3445677777777666 44444332  345554332 22221  0111 1234455553     3466666666677766


Q ss_pred             c
Q 045370          226 D  226 (350)
Q Consensus       226 ~  226 (350)
                      .
T Consensus       244 d  244 (726)
T KOG3621|consen  244 D  244 (726)
T ss_pred             e
Confidence            5

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=6e-05  Score=65.84  Aligned_cols=173  Identities=17%  Similarity=0.198  Sum_probs=112.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|||-|.||+|-..-| |.+|-=..                           -..+.. ..| ..|.-+.|+| ...+|
T Consensus       216 v~wSP~GTYL~t~Hk~G-I~lWGG~~---------------------------f~r~~R-F~H-p~Vq~idfSP-~EkYL  264 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQG-IALWGGES---------------------------FDRIQR-FYH-PGVQFIDFSP-NEKYL  264 (698)
T ss_pred             EEecCCceEEEEEeccc-eeeecCcc---------------------------HHHHHh-ccC-CCceeeecCC-ccceE
Confidence            47999999999998766 88995431                           111111 123 4466677755 56788


Q ss_pred             EEEeC-----------CCcEEEEeCCCCceEEEEec---CCc-eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           81 VSSSL-----------DATCKVWDLGSGILIQTQVY---PQA-VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        81 ~s~~~-----------d~~v~vwd~~~~~~~~~~~~---~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      +|-+.           ...++|||+.+|...+.+..   +.. -.-..|+.|+++++.-.. ..|.||+..+..+.....
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS  343 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence            87543           25799999999998888664   222 224679999999998776 568899887654333211


Q ss_pred             cccccceeeeccCCceEEEEecCCe--EEEEe--C---CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASH--LISAS--E---DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~--~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                                -....|....|+|..  ||--.  .   -..+.+-.+.+++.+++-.-+.-.=..|.|-.+|.+|+.
T Consensus       344 ----------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  344 ----------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             ----------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence                      123567888899987  33222  1   135777777777777766554444445667777777764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=6.9e-05  Score=68.32  Aligned_cols=144  Identities=14%  Similarity=0.096  Sum_probs=94.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC----CCcEEE
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG----GTTFFV   81 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~   81 (350)
                      +|.+++|||.||+|.|-.+-+                           ... .+......++.++++.|.    ....++
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~---------------------------~~~-~~~~df~rpiksial~Pd~~~~~sk~fv  133 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFT---------------------------DDE-ITQYDFKRPIKSIALHPDFSRQQSKQFV  133 (846)
T ss_pred             CCceEEEecCCCcEEEeeccC---------------------------Ccc-ceeEecCCcceeEEeccchhhhhhhhee
Confidence            699999999999999988762                           221 122345678888888764    235789


Q ss_pred             EEeCCCcEEEEeCC---CCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           82 SSSLDATCKVWDLG---SGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        82 s~~~d~~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +||.-| +.++.-+   ....+......++|.++.|  .|++|+=++.+| |++||................    .-..
T Consensus       134 ~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~----~R~e  205 (846)
T KOG2066|consen  134 SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS----VRPE  205 (846)
T ss_pred             ecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCC----CCcc
Confidence            999888 7776633   2223333456789999999  588888888665 899999865543321111100    0011


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                      .....+.|.++. |+.|-.| +|+|..++
T Consensus       206 ~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             cCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence            223457788877 6666655 68888777

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.23  E-value=3.2e-07  Score=80.89  Aligned_cols=183  Identities=15%  Similarity=0.185  Sum_probs=119.2

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC--
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL--   85 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--   85 (350)
                      .+++.|..+|.|.+-.+...                         ...-.....+|..+.++++|.+-+.++||.|-.  
T Consensus        71 cIlavG~atG~I~l~s~r~~-------------------------hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkh  125 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHP-------------------------HDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKH  125 (783)
T ss_pred             hhhhhccccCceEEeecCCc-------------------------ccccceecccccccccccccccccHHHHHhhhhhh
Confidence            46788888899988877621                         111244567888999999999888888888743  


Q ss_pred             --CCcEEEEeCCCC--ceEEE--E--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           86 --DATCKVWDLGSG--ILIQT--Q--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        86 --d~~v~vwd~~~~--~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                        |..+.+||+.++  .+...  +  .......+++|..+.+++.+|.....+.++|++......           ..-.
T Consensus       126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-----------~svn  194 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-----------SSVN  194 (783)
T ss_pred             cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-----------hhhh
Confidence              567999999876  22222  1  123456689999899999999999999999998432111           1112


Q ss_pred             CCceEEEEecC-Ce-EEEEeCCCcEEEEE-CCCc-eEEEEeccCCC----ceeEEEEEccCC-eEEeeecCccccccc
Q 045370          158 NGSITALAFSA-SH-LISASEDKTVCLWD-VTRR-VSIRRFNHKKG----VVTNLVVIRQSS-LLSEVSNCQRKLKKD  226 (350)
Q Consensus       158 ~~~i~~~~~~~-~~-l~s~~~dg~v~iwd-~~~~-~~~~~~~~~~~----~v~~l~~~~~~~-~l~~~~~~~~~~~~~  226 (350)
                      +..+..+...| .. .++...||.|.+|| .++- .++..+.....    .+..++|+|... .+++...+...++..
T Consensus       195 Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  195 TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            23445566666 33 55556699999999 4432 23333332222    489999999754 455555554444443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.22  E-value=0.00046  Score=56.56  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=103.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      +++.++++++.++.+..||..+                           +..+..... ...+......  .+..++.++
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~t---------------------------G~~~W~~~~-~~~~~~~~~~--~~~~v~v~~   83 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKT---------------------------GKVLWRFDL-PGPISGAPVV--DGGRVYVGT   83 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTT---------------------------SEEEEEEEC-SSCGGSGEEE--ETTEEEEEE
T ss_pred             EeCCEEEEEcCCCEEEEEECCC---------------------------CCEEEEeec-cccccceeee--ccccccccc
Confidence            3567788888999999999873                           332222221 1111111111  233466666


Q ss_pred             CCCcEEEEeCCCCceEEEE-ecCC----ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc-eeeeccC
Q 045370           85 LDATCKVWDLGSGILIQTQ-VYPQ----AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLKGHN  158 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~-~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~  158 (350)
                      .++.|..+|..+|+.+... ....    ..........+..++++..++.|..+|++++............. ..+....
T Consensus        84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  163 (238)
T PF13360_consen   84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS  163 (238)
T ss_dssp             TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred             ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence            8889999999999998884 3221    11222233347888888889999999999877644322211000 0000001


Q ss_pred             CceEEEEecCCeEEEEeCCCc-EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          159 GSITALAFSASHLISASEDKT-VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       159 ~~i~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .....+.+..+.++.++.++. +.+ |+.+++.+....  ...+.. ...+.+..|++++.++.+.
T Consensus       164 ~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  164 DINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             TEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred             ccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEE
Confidence            111233333334777777775 555 999999776443  222222 2456777777677554443

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=1.1e-06  Score=80.35  Aligned_cols=176  Identities=22%  Similarity=0.213  Sum_probs=118.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++||.+.++|+.|+..|.|++|++.                           .+........|..+|+-+.-+..+...|
T Consensus      1107 ~afs~~~~hL~vG~~~Geik~~nv~---------------------------sG~~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVS---------------------------SGSMEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             EEeecCCceEEeeeccceEEEEEcc---------------------------CccccccccccccccccccccCCcceee
Confidence            4799999999999999999999999                           4666677788999999987655333444


Q ss_pred             EEEeCCC-cEEEEeCCC-CceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDA-TCKVWDLGS-GILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~-~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      .+++... -..+|++.. +...+++.   .-.++.|+..-..-+.|+......+||+.++.....+...     .. +..
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-----~~-~~~ 1230 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-----TV-TSS 1230 (1516)
T ss_pred             eeccccCchHHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-----ch-hhh
Confidence            4444444 568999875 44444443   3457888876555566666678899999987654432211     00 111


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      -.-++..|+|.. |+-  .||  .+||.+..+.++.|...... -.-.|+|.|.-++..+
T Consensus      1231 y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred             hhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence            222677888887 553  355  48999988878777644322 2235888887776544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.9e-05  Score=66.14  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=99.9

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC-cEEEEEccCCeEEEEeC
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~  135 (350)
                      ...+..|...|.+++|+|.+..++..++.+..|+|.|+.+..++..+.....+++++|+-+. ++|++|..+|.|.+||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            33667888999999998876668899999999999999999988888777999999999865 57889999999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEe------cCC-eEEEEeCCCcEEEEECCC----ceEEEEeccCCCceeEE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAF------SAS-HLISASEDKTVCLWDVTR----RVSIRRFNHKKGVVTNL  204 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~-~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~l  204 (350)
                      +...........       .-...+|..++.      .+. |++++..- .+..|.+.-    ..++..+. ..+...++
T Consensus       266 R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele-~pG~cism  336 (463)
T KOG1645|consen  266 RQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELE-PPGICISM  336 (463)
T ss_pred             cCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccC-CCcceeee
Confidence            965432211111       011223333332      222 35555433 256776542    22222332 35566677


Q ss_pred             EEEccCCeEEee
Q 045370          205 VVIRQSSLLSEV  216 (350)
Q Consensus       205 ~~~~~~~~l~~~  216 (350)
                      ++++..+.++..
T Consensus       337 qy~~~snh~l~t  348 (463)
T KOG1645|consen  337 QYHGVSNHLLLT  348 (463)
T ss_pred             eecCccceEEEE
Confidence            777755554433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.19  E-value=0.00036  Score=67.97  Aligned_cols=154  Identities=10%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEE----eCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVW----DLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      ...+.|.++.|.+ +...++.+..+|-|.+.    +..+......-.....|.+++|+||+..++.++.++.+.+.+...
T Consensus        73 ~~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            3457899999987 44567888889999999    666655544455778999999999999999999999888865321


Q ss_pred             ccc-----------------------cccccc-ccc--------c------ceeeeccCCceEEEEecCCe--EEEEeC-
Q 045370          138 LLL-----------------------EDHFIV-GED--------Q------HSVLKGHNGSITALAFSASH--LISASE-  176 (350)
Q Consensus       138 ~~~-----------------------~~~~~~-~~~--------~------~~~~~~~~~~i~~~~~~~~~--l~s~~~-  176 (350)
                      ...                       ...+-. ..+        +      ...+. +...-..++|-.||  +|+.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence            100                       000000 000        0      01122 34456788999999  555553 


Q ss_pred             --C---CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          177 --D---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       177 --d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                        .   ..+|||+-. |.+..+-+.-.+--.+++|-|.|.++|+...
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence              2   579999876 7666655545555677899999999997765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.17  E-value=0.00036  Score=57.18  Aligned_cols=115  Identities=11%  Similarity=0.088  Sum_probs=77.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-ccccccceeee
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-IVGEDQHSVLK  155 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~  155 (350)
                      +..+++++.++.|..||..+|+.+........+.... ...+..+++++.++.++.+|..+++..... ....      .
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~------~  108 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS------P  108 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS------C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc------c
Confidence            3456777899999999999999998877655543332 224556676777889999998877654431 1110      0


Q ss_pred             cc-CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCC
Q 045370          156 GH-NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKK  198 (350)
Q Consensus       156 ~~-~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  198 (350)
                      .. ........+..+.++.+..++.|..+|+.+|+.+.......
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            01 11122333444448888889999999999999998886533

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.17  E-value=0.0003  Score=68.50  Aligned_cols=181  Identities=12%  Similarity=0.096  Sum_probs=109.2

Q ss_pred             CeecCCCCEEEEEeC------CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSD------DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      |+|-.||.|+|+.+.      -+.|+||+-+                            +.+......-.+--.+++|-|
T Consensus       215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----------------------------G~L~stSE~v~gLe~~l~WrP  266 (928)
T PF04762_consen  215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----------------------------GELQSTSEPVDGLEGALSWRP  266 (928)
T ss_pred             EEECCCCcEEEEEEEEcCCCceeEEEEECCC----------------------------ceEEeccccCCCccCCccCCC
Confidence            579999999998875      2589999877                            222222222223334567855


Q ss_pred             CCCcEEEEEeC---CCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           75 GGTTFFVSSSL---DATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        75 ~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                       .|+++|+.-.   ...|.+|.- +|-.-..+.     ....|..+.|++++..|+....|. |.+|-..+....-+.  
T Consensus       267 -sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq--  341 (928)
T PF04762_consen  267 -SGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ--  341 (928)
T ss_pred             -CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE--
Confidence             7788887654   344666663 343333332     345799999999999999977655 999988765432111  


Q ss_pred             ccccceeee-ccCCceEEEEecCCe---EEEEeCCCcEEEEECC----Cc--------eEEEEec---------------
Q 045370          147 GEDQHSVLK-GHNGSITALAFSASH---LISASEDKTVCLWDVT----RR--------VSIRRFN---------------  195 (350)
Q Consensus       147 ~~~~~~~~~-~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~----~~--------~~~~~~~---------------  195 (350)
                            .+. .....+..+.|+|..   |...+.+|.+..++..    .+        ..+..+.               
T Consensus       342 ------ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  342 ------EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             ------EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence                  111 112234448888765   6666665665554431    11        0111111               


Q ss_pred             --------cCCCceeEEEEEccCCeEEeeecCc
Q 045370          196 --------HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       196 --------~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                              ....+|..++|++++..+++-..++
T Consensus       416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             chHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence                    1246899999999987666555555

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.17  E-value=0.0017  Score=52.49  Aligned_cols=198  Identities=16%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee---eccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY---SLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~   77 (350)
                      ++.+.||++||.- .|..|.|-.....                         -...+..   .....-.-.-++|+ +++
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd-------------------------f~si~~kcqVpkD~~PQWRkl~WS-pD~   55 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDD-------------------------FSSIIGKCQVPKDPNPQWRKLAWS-PDC   55 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCC-------------------------chheeEEEecCCCCCchheEEEEC-CCC
Confidence            3567888888766 5677777665521                         1111111   12223344667785 588


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCceeEEEEcCC------CcEEEEEccCCeEEEEeCCccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV--------YPQAVTAIAFHPG------EQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      .+||.+...|+|+++|+....+. .+.        ....|..+.|-+.      ...|++...+|.++-|-+..+....-
T Consensus        56 tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y  134 (282)
T PF15492_consen   56 TLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY  134 (282)
T ss_pred             cEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc
Confidence            99999999999999998854332 322        2345666666542      23567777788888777643211100


Q ss_pred             cccccccceeee-ccCCceEEEEecCCe---EEEEeCCC----------cEEEEECCCceEEE-----------------
Q 045370          144 FIVGEDQHSVLK-GHNGSITALAFSASH---LISASEDK----------TVCLWDVTRRVSIR-----------------  192 (350)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~---l~s~~~dg----------~v~iwd~~~~~~~~-----------------  192 (350)
                         ...-...+. .+...|+++.++|..   ++.|++..          -+.-|.+-++.+-.                 
T Consensus       135 ---~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~  211 (282)
T PF15492_consen  135 ---QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR  211 (282)
T ss_pred             ---eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence               000111222 247789999999986   44444432          25556443221100                 


Q ss_pred             ---Ee---------ccCCCceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370          193 ---RF---------NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       193 ---~~---------~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                         .+         ......|..|..||||.+|++...++.+ .+|.++.
T Consensus       212 ~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l-sLW~iPs  260 (282)
T PF15492_consen  212 GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL-SLWEIPS  260 (282)
T ss_pred             ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE-EEEecCc
Confidence               00         0124468888899999999877666543 3444443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.13  E-value=6e-05  Score=70.62  Aligned_cols=138  Identities=11%  Similarity=0.156  Sum_probs=94.7

Q ss_pred             CCcEEEEE-eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCC-------CcEEEEEccCCeEEEEeCCccccccccccc
Q 045370           76 GTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG-------EQLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        76 ~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      +..+|+.- .....|.-.|+..|+++..+.....+.-..+.|+       ...-+.|-.+..+..||.|...  ... ..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~-v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKL-VD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cce-ee
Confidence            34444433 4567899999999999999875554444555553       2345667778899999999432  000 00


Q ss_pred             cccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecC
Q 045370          148 EDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                       ... ..........|++-+.+| ||+|+.+|.||+||-- |...++ +++-..||..|+.+.||+++++++..
T Consensus       569 -~~~-k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  569 -SQS-KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             -ccc-cccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence             001 111344568899999999 9999999999999943 333333 45667899999999999999876654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.11  E-value=5.7e-05  Score=68.60  Aligned_cols=146  Identities=18%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCC------------cEEEEEccCCeEEEE
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGE------------QLLFAGSIDGRIFVS  133 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~------------~~l~~~~~dg~i~i~  133 (350)
                      -.++.|++ .| +++-|+ ...|.+-|..+-+.++.+. |+..|+.+.|.|-.            -.|++++..|.|.+|
T Consensus        18 ~~A~Dw~~-~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   18 RNAADWSP-SG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             ccccccCc-cc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            45566755 33 455554 5679999999999888876 67789999998721            257778888999999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe------EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                      |+.....          +..+..|..++..++|-+..      |++-....+|.+|+..+|+.+.........+.++.+.
T Consensus        95 d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen   95 DFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             Eehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence            9985433          23566788889999997643      7777778899999999999999888666778888888


Q ss_pred             ccC-CeEEeeecCcccccc
Q 045370          208 RQS-SLLSEVSNCQRKLKK  225 (350)
Q Consensus       208 ~~~-~~l~~~~~~~~~~~~  225 (350)
                      |-. +.+..-+..+.++..
T Consensus       165 Pfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             CCCcceEEEEccCceEEEE
Confidence            853 444444444444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=1.3e-05  Score=72.02  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=90.3

Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc-----cccccceeeeccCCceEEEEecCCe--EEEEeC
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI-----VGEDQHSVLKGHNGSITALAFSASH--LISASE  176 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~  176 (350)
                      +......|+.|+....+|++|+.||.+++..+.+........     ........+.+|...|.-+.|+.+.  |-++..
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            345568899999999999999999999999887643221110     1112234788999999999999887  888899


Q ss_pred             CCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCccc
Q 045370          177 DKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       177 dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                      +|.|.+|-+..++-...+-  ...+.|.+++|..+|..++....|+.+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav  139 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV  139 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence            9999999998877554442  346789999999999887766665433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.00093  Score=60.76  Aligned_cols=140  Identities=10%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC-----CceEEEEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccc--cccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGS-----GILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLE--DHFIVG  147 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~--~~~~~~  147 (350)
                      ++++...  .++.|.+.|..+     ...+..+........+.++|||+++++++. +..|.++|+.+.+..  ......
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            3444443  367899999998     467777888899999999999999887765 799999999875421  000000


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC----------ceEEEEeccCCCce-----eEEEEEccC
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR----------RVSIRRFNHKKGVV-----TNLVVIRQS  210 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v-----~~l~~~~~~  210 (350)
                      ........- .......+|.++|  +.|-.-|..|..||+.+          ...+..+..|..+-     .+=.-.|+|
T Consensus       365 ~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dg  443 (635)
T PRK02888        365 DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADG  443 (635)
T ss_pred             ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCC
Confidence            001111111 2334456788887  77777899999999876          34555555443332     222347899


Q ss_pred             CeEEeeec
Q 045370          211 SLLSEVSN  218 (350)
Q Consensus       211 ~~l~~~~~  218 (350)
                      ++|++...
T Consensus       444 k~l~~~nk  451 (635)
T PRK02888        444 KWLVSLNK  451 (635)
T ss_pred             CEEEEccc
Confidence            99986654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.08  E-value=0.00049  Score=57.04  Aligned_cols=142  Identities=16%  Similarity=0.161  Sum_probs=101.3

Q ss_pred             eEEEEeeCCCcEEEEEeCCCc-EEEEeCCCCceEEEEecCCc---eeEEEEcCCCcEEEEEcc-----CCeEEEEeCCcc
Q 045370           68 TGLLTISGGTTFFVSSSLDAT-CKVWDLGSGILIQTQVYPQA---VTAIAFHPGEQLLFAGSI-----DGRIFVSPLKFL  138 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~  138 (350)
                      ..++..|.....++.+-.-|+ ..+||..+++....+..+..   --.-+|++||++|++.-.     .|.|-+||... 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence            345666656677777777665 57899999998877653322   226789999999998743     58999999983 


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------------------CCcEEEEECCCceEEEEec---
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------------------DKTVCLWDVTRRVSIRRFN---  195 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------------------dg~v~iwd~~~~~~~~~~~---  195 (350)
                              .-..+..+..|.-....+.+.|++  |+++..                  +-.+.+.|..+|+++.+..   
T Consensus        87 --------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   87 --------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             --------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence                    233344677777777788889988  555432                  2356667888898887743   


Q ss_pred             -cCCCceeEEEEEccCCeEEeeec
Q 045370          196 -HKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       196 -~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                       .|...|..|++.++|..++..-.
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEec
Confidence             36778999999999988774443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.07  E-value=0.00015  Score=62.74  Aligned_cols=137  Identities=20%  Similarity=0.261  Sum_probs=91.9

Q ss_pred             cccCCceEEEEeeCCCcEE-EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC---CeEEEEeCCc
Q 045370           62 EHKSSVTGLLTISGGTTFF-VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID---GRIFVSPLKF  137 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~  137 (350)
                      .-.++|...+|.|....+. ++|-.+-.+.++|++.+  +........=+.+.|+|.+++++.++-|   |.+-+||...
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence            6689999999977554443 34457788999999866  3333344556788899999999987755   7899999763


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EEE--Ee----CCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS--AS----EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s--~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                      ...         .+..+.+  ....-+.|+|++  +.+  .+    .|..+.|||+......        ..+.+.|.|.
T Consensus       350 rf~---------~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~  410 (561)
T COG5354         350 RFK---------VAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPS  410 (561)
T ss_pred             ceE---------EEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCC
Confidence            211         1112222  234456799999  332  22    3678999998743222        4567778888


Q ss_pred             CCeEEeeecC
Q 045370          210 SSLLSEVSNC  219 (350)
Q Consensus       210 ~~~l~~~~~~  219 (350)
                      +++..+.+.+
T Consensus       411 ~~~~ttsSs~  420 (561)
T COG5354         411 GQYVTTSSSC  420 (561)
T ss_pred             cccceeeccC
Confidence            8888766655

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=7.1e-06  Score=75.39  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=109.1

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccC--CeEEE
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID--GRIFV  132 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--g~i~i  132 (350)
                      .+..+..|+...+|++|+. +.++|+.|+..|.|+++++.+|....... |..+|+.+.-+.+|..+++.+.-  -...+
T Consensus      1093 ~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            3456677888899999855 66889999999999999999998877754 88899999988899877765543  35678


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-c---CCCceeEEEE
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-H---KKGVVTNLVV  206 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~---~~~~v~~l~~  206 (350)
                      |++..         ...+...+    ..-.++.|+...  -+.|.......+||+.++.++.++. +   ..-.-....|
T Consensus      1172 W~~~s---------~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1172 WDASS---------TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             hcccc---------ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            88874         12222222    234567887765  3344444578999999998877642 1   1112366789


Q ss_pred             EccCCeEEeeecCccccccc
Q 045370          207 IRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +|+..+++   +++-+|.+.
T Consensus      1239 sP~D~LIl---ndGvLWDvR 1255 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGVLWDVR 1255 (1516)
T ss_pred             CCCcceEe---eCceeeeec
Confidence            99998887   455555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.96  E-value=0.00073  Score=59.65  Aligned_cols=113  Identities=9%  Similarity=0.027  Sum_probs=71.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +..++.++.++.+..+|..+|+.+........+.+.-.. .+..++.++.+|.++.||.++++........... .....
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA-LTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc-eeecC
Confidence            456778888999999999999988876655443321111 3456777888999999999877654322111100 00001


Q ss_pred             cCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370          157 HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       157 ~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      ..    ......+.++.+..+|.+..+|+++|+.+.+..
T Consensus       183 ~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       183 SA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             CC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            11    111222237778888999999999998876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.95  E-value=0.0016  Score=53.17  Aligned_cols=185  Identities=11%  Similarity=0.128  Sum_probs=99.1

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~   78 (350)
                      |+|+|+.+ ++++....+.|..++.+                            +..++.+.- ..+-.-+|++.. ++.
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~~----------------------------G~vlr~i~l~g~~D~EgI~y~g-~~~   77 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSLD----------------------------GKVLRRIPLDGFGDYEGITYLG-NGR   77 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT------------------------------EEEEEE-SS-SSEEEEEE-S-TTE
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcCC----------------------------CCEEEEEeCCCCCCceeEEEEC-CCE
Confidence            57889755 56666677787777765                            333433322 235567788754 556


Q ss_pred             EEEEEeCCCcEEEEeCCCCc----e--EEEEe------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-c
Q 045370           79 FFVSSSLDATCKVWDLGSGI----L--IQTQV------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-I  145 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~----~--~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~  145 (350)
                      ++++--.++.+.++++....    .  ...+.      ....+..++|+|.++.|+++-...-..+|.+......... .
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence            66665568999999884321    1  11121      3345899999998888888776666666665531100000 0


Q ss_pred             cccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCC---------CceeEEEEEccCCeE
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKK---------GVVTNLVVIRQSSLL  213 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l  213 (350)
                      ...............+.++.++|..   ++-+..+..|..+| .+|+++..+.-..         ...-.|+|.++|.+.
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            0000000112233457889999875   66777888999999 6677776654221         246789999999877


Q ss_pred             Ee
Q 045370          214 SE  215 (350)
Q Consensus       214 ~~  215 (350)
                      ++
T Consensus       237 Iv  238 (248)
T PF06977_consen  237 IV  238 (248)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.92  E-value=0.001  Score=53.09  Aligned_cols=123  Identities=15%  Similarity=0.116  Sum_probs=87.1

Q ss_pred             eCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +....+++.|+..+.+.--|..+|+.....-....+.+-+.- -|++++.|+..|.+++.+..++.....+..-      
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------   92 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------   92 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence            445678899999999999999999988875555554443332 4778999999999999999987544332211      


Q ss_pred             eeccCCceE-EEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          154 LKGHNGSIT-ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       154 ~~~~~~~i~-~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                           +.|. .....+++  +..|+.|++.+..|.++..++...+...+...+-+..|
T Consensus        93 -----~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   93 -----ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             -----hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence                 1111 12234444  99999999999999999999988765444444445555

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.92  E-value=0.002  Score=44.70  Aligned_cols=100  Identities=19%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             ceEEEEeeCC---CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           67 VTGLLTISGG---TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        67 v~~~~~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      |.+++++.-+   .+.|+.|+.|..|++|+-.  ..+..+...+.|.+++-... ..|+.+..+|+|-+|+-.....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW---   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW---   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence            4556555432   3679999999999999854  57777888888999887765 6688888899999998643211   


Q ss_pred             cccccccceeeeccCCceEEEEec---CCe---EEEEeCCCcEEE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFS---ASH---LISASEDKTVCL  182 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~---l~s~~~dg~v~i  182 (350)
                               ..+.. ..++++.+.   .+|   |++|-.+|.|-+
T Consensus        76 ---------RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 ---------RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---------eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                     12222 235566543   334   999999998743

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.88  E-value=0.008  Score=52.88  Aligned_cols=215  Identities=14%  Similarity=0.158  Sum_probs=111.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccc-cccccc---------cccccccEEEeecccc------ccceeeecccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT-SELMHH---------SDQLDQRLIEMELRSL------RSLLHYSLEHK   64 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~h~   64 (350)
                      |.|+++..-|+.|...|.|.||.+....... ......         -....+.+.+...+..      ..+...+....
T Consensus         7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~   86 (395)
T PF08596_consen    7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ   86 (395)
T ss_dssp             EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred             EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence            4678888889999999999999987643332 111111         0112455555543322      12334445568


Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec---------CCceeEEEEcC-----CC---cEEEEEccC
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY---------PQAVTAIAFHP-----GE---QLLFAGSID  127 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------~~~v~~~~~~~-----~~---~~l~~~~~d  127 (350)
                      ++|++++.+  +=-+++.|..+|.+.|.|++....+..-..         ...++++.|..     |+   -.+++|+..
T Consensus        87 g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   87 GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             -SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            999999874  345899999999999999998887776321         23577888863     33   478899999


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEE-ecC----------------------CeEEEEeCCCcEEEEE
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA-FSA----------------------SHLISASEDKTVCLWD  184 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----------------------~~l~s~~~dg~v~iwd  184 (350)
                      |.+.+|.+.-.. ...+..  ........+.++|..+. ++.                      .+++....+..++++.
T Consensus       165 G~v~~fkIlp~~-~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  165 GNVLTFKILPSS-NGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             SEEEEEEEEE-G-GG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             CCEEEEEEecCC-CCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999885211 111111  11111124445555554 211                      1245555577899999


Q ss_pred             CCCceEEEEeccCCCceeEEEEE-----ccCCeEEeeecCc
Q 045370          185 VTRRVSIRRFNHKKGVVTNLVVI-----RQSSLLSEVSNCQ  220 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~v~~l~~~-----~~~~~l~~~~~~~  220 (350)
                      ..+.+..+......-....+++-     ..+..|++-..++
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G  282 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNG  282 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCC
Confidence            98877766655222233444553     2445555444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.87  E-value=0.0013  Score=45.58  Aligned_cols=95  Identities=26%  Similarity=0.319  Sum_probs=64.5

Q ss_pred             ecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            3 FSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         3 ~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      |..|| +.|+.|+.|..|+||+-+                              .+.....-.+.|.+++....  ..|+
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~------------------------------e~~~Ei~e~~~v~~L~~~~~--~~F~   57 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD------------------------------EIVAEITETDKVTSLCSLGG--GRFA   57 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC------------------------------cEEEEEecccceEEEEEcCC--CEEE
Confidence            45555 579999999999999755                              12222334577777776543  5689


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-C--C-cEEEEEccCCeEE
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-G--E-QLLFAGSIDGRIF  131 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~  131 (350)
                      .+..+|+|-+|+-..  .+...+....+.++.+.. +  | ..|++|-.+|.|-
T Consensus        58 Y~l~NGTVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   58 YALANGTVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEecCCEEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999999999998633  333444455566766654 2  2 3788888888774

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.0002  Score=64.53  Aligned_cols=110  Identities=21%  Similarity=0.215  Sum_probs=83.2

Q ss_pred             eCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ....++++.|+.-|.|.+|+-..+.......  ..+.+..++++++..+++.|+..|.|.++-+.............   
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~---  118 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP---  118 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc---
Confidence            3367889999999999999988776554422  34556777889999999999999999999887632221111110   


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR  187 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~  187 (350)
                       .-..|...|++++|++++  +++|...|+|..-.+.+
T Consensus       119 -~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 -CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             112378999999999999  99999999999888876

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.00047  Score=60.32  Aligned_cols=132  Identities=10%  Similarity=0.174  Sum_probs=96.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc-------EEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ-------LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ++.++..-..++-.|+..|+.+........|+-+.+.|+.+       .-+.|-.|..|.-||.+-....        .+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--------kl  419 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--------KL  419 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--------ee
Confidence            45566667789999999999999988777799999988653       2234556888999999832211        11


Q ss_pred             eeeecc----CCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEE-EeccCCCceeEEEEEccCCeEEeeecC
Q 045370          152 SVLKGH----NGSITALAFSASH-LISASEDKTVCLWDVTRRVSIR-RFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       152 ~~~~~~----~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ....+|    ...-.|++-..+| +++||.+|.|++||- .+...+ -+++...+|..+..+.+|+++++++..
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            122222    2456777778888 999999999999998 444443 356777899999999999999966654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.80  E-value=0.00092  Score=59.25  Aligned_cols=138  Identities=17%  Similarity=0.077  Sum_probs=80.0

Q ss_pred             EEEeeCCCcEEEEEeCCCcE--EEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCe--EEEEeCCcccccccc
Q 045370           70 LLTISGGTTFFVSSSLDATC--KVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGR--IFVSPLKFLLLEDHF  144 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~~v--~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~  144 (350)
                      -.|+|.+..++++...||..  .++|+.+++........+.-..=.|+|+|+.|+-.+ ..|.  |.+++.....     
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----  317 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----  317 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----
Confidence            36777665666777778764  556777666444222233333567899999877654 4454  5555554321     


Q ss_pred             ccccccceeeeccCCceEEEEecCCe--EEEEe-CCCc--EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                            ...+......-..-.|+|+|  ++..+ .+|.  |.+.|+.++..+..+. .......-.|.|+++.+...+..
T Consensus       318 ------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         318 ------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence                  12333333333377899999  43333 3454  7777777666544443 33444556788888877755443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.017  Score=51.00  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=117.0

Q ss_pred             eecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++++++. .+++...++.|.+.|...                           ........ -......+++.+.++...
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~---------------------------~~~~~~~~-vG~~P~~~~~~~~~~~vY  131 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTAT---------------------------NTVLGSIP-VGLGPVGLAVDPDGKYVY  131 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCcc---------------------------cceeeEee-eccCCceEEECCCCCEEE
Confidence            5667776 444555568888888652                           22222221 112566777877555555


Q ss_pred             EEEe--CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSS--LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++-.  .++++.+.|..+++.............++++|+|..++++. .++.|.+.|........ ..     ......-
T Consensus       132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-----~~~~~~~  205 (381)
T COG3391         132 VANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-----VGSLVGV  205 (381)
T ss_pred             EEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-----ccccccc
Confidence            5555  47899999999999888855443348999999999777665 67999999976433221 00     0001122


Q ss_pred             CCceEEEEecCCe---EEEEeCC--CcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecC
Q 045370          158 NGSITALAFSASH---LISASED--KTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~d--g~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ......+.++|++   .++-..+  +.+...|..++..... +.........+.++|+|.++.+....
T Consensus       206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence            2344668888888   3332222  6899999999888776 22111156778999999988877554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0013  Score=58.61  Aligned_cols=162  Identities=12%  Similarity=0.096  Sum_probs=76.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |.++|+|++++.+ .||...|+....                           ...     ...+.-...+|.+ .+. +
T Consensus        38 ls~npngr~v~V~-g~geY~iyt~~~---------------------------~r~-----k~~G~g~~~vw~~-~n~-y   82 (443)
T PF04053_consen   38 LSHNPNGRFVLVC-GDGEYEIYTALA---------------------------WRN-----KAFGSGLSFVWSS-RNR-Y   82 (443)
T ss_dssp             EEE-TTSSEEEEE-ETTEEEEEETTT---------------------------TEE-----EEEEE-SEEEE-T-SSE-E
T ss_pred             EEECCCCCEEEEE-cCCEEEEEEccC---------------------------Ccc-----cccCceeEEEEec-Ccc-E
Confidence            4689999998885 578888887431                           111     1123344556766 333 5


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      |+-...+.|.++.--++.....+..+..+..+-.   |..|...+ ++.|.+||..++..          ++.+..  .+
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~----------i~~i~v--~~  146 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKL----------IRRIDV--SA  146 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--E----------EEEESS---E
T ss_pred             EEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEEC-CCCEEEEEhhHcce----------eeEEec--CC
Confidence            6666677788853222222223333334444433   66666655 34788888875432          223322  23


Q ss_pred             eEEEEecCCe-EEEEeCCCcEEEEECCCc--------------eEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          161 ITALAFSASH-LISASEDKTVCLWDVTRR--------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      |..+.|++++ +++-..+..+.|++....              ..+.++   ...|.+.+|..+ -++.+..
T Consensus       147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~  214 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS  214 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T
T ss_pred             CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC
Confidence            7888888887 333334556777765433              223222   356777778766 4444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.69  E-value=0.0053  Score=54.54  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=82.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ..++.++.+|.+..+|..+|+.+........ ..+..  .+..++.++.+|.+..+|..++........       . .+
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------~-~~  325 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-------L-LH  325 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-------c-CC
Confidence            3466777899999999999988776543321 12222  467788888899999999987654321100       0 00


Q ss_pred             CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeE-EEEEccCCeEEeeecCcccc
Q 045370          158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN-LVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~~~~~~~  223 (350)
                       ..........+.++.++.||.|+..|..+|+.+.+.......+.+ ..+ .++ .|+.++.++.++
T Consensus       326 -~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~  389 (394)
T PRK11138        326 -RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVY  389 (394)
T ss_pred             -CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEE
Confidence             111222233334888999999999999999998887643332322 222 234 455567666554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.60  E-value=0.006  Score=58.82  Aligned_cols=185  Identities=11%  Similarity=0.041  Sum_probs=111.2

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|-.+++.++.+..+|.|.+-|.++                            ..+.....-...|.+.+|++ +...++
T Consensus        75 ~fl~d~~~i~v~~~~G~iilvd~et----------------------------~~~eivg~vd~GI~aaswS~-Dee~l~  125 (1265)
T KOG1920|consen   75 QFLADTNSICVITALGDIILVDPET----------------------------LELEIVGNVDNGISAASWSP-DEELLA  125 (1265)
T ss_pred             EEecccceEEEEecCCcEEEEcccc----------------------------cceeeeeeccCceEEEeecC-CCcEEE
Confidence            3455667777777888888877662                            22233334567888888866 677788


Q ss_pred             EEeCCCcEEEEeCC----CCceE-----------E--------EEe----------------------cCCceeEEEEcC
Q 045370           82 SSSLDATCKVWDLG----SGILI-----------Q--------TQV----------------------YPQAVTAIAFHP  116 (350)
Q Consensus        82 s~~~d~~v~vwd~~----~~~~~-----------~--------~~~----------------------~~~~v~~~~~~~  116 (350)
                      ..+.++++.+..-.    ..+.+           .        .+.                      ..+.=+.|+|--
T Consensus       126 liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg  205 (1265)
T KOG1920|consen  126 LITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG  205 (1265)
T ss_pred             EEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc
Confidence            77777777665431    11111           0        010                      011223589999


Q ss_pred             CCcEEEEE-----ccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE---eCCCcEEEEECC
Q 045370          117 GEQLLFAG-----SIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA---SEDKTVCLWDVT  186 (350)
Q Consensus       117 ~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~---~~dg~v~iwd~~  186 (350)
                      ||.++++.     ..-..|++||.. +.....    .      ....+-=.+++|-|.|  +++-   ..|+.|.+|.-+
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~----s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE-GALNST----S------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc-chhhcc----c------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence            99999883     333799999987 333221    0      1112233568999988  4432   346679999755


Q ss_pred             C---ceEEEEeccCCCceeEEEEEccCCeEEeeecC--ccccccc
Q 045370          187 R---RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC--QRKLKKD  226 (350)
Q Consensus       187 ~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~--~~~~~~~  226 (350)
                      .   |...-.+......+..++|+.++.+|++...+  ...+.+|
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence            3   33333344334459999999999999963332  3334455

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.0014  Score=60.62  Aligned_cols=67  Identities=15%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|..-.|+.|-.-|.+.+|...                           ..........|..+|..+.|++ +|..+
T Consensus        65 LCWHpe~~vLa~gwe~g~~~v~~~~---------------------------~~e~htv~~th~a~i~~l~wS~-~G~~l  116 (1416)
T KOG3617|consen   65 LCWHPEEFVLAQGWEMGVSDVQKTN---------------------------TTETHTVVETHPAPIQGLDWSH-DGTVL  116 (1416)
T ss_pred             hccChHHHHHhhccccceeEEEecC---------------------------CceeeeeccCCCCCceeEEecC-CCCeE
Confidence            4678877778888888888888876                           3444445577999999999966 77889


Q ss_pred             EEEeCCCcEEEEeCC
Q 045370           81 VSSSLDATCKVWDLG   95 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~   95 (350)
                      +|+..-|.|.+|.+.
T Consensus       117 ~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEcCCCceeEEEEee
Confidence            999999999999876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00032  Score=62.53  Aligned_cols=87  Identities=11%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCce-EEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVT-GLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~   79 (350)
                      +.|+|.-.++|++..+|.|.+..+.                            ...+..+.-|...++ +++|.+ +|++
T Consensus        26 ~ewnP~~dLiA~~t~~gelli~R~n----------------------------~qRlwtip~p~~~v~~sL~W~~-DGkl   76 (665)
T KOG4640|consen   26 IEWNPKMDLIATRTEKGELLIHRLN----------------------------WQRLWTIPIPGENVTASLCWRP-DGKL   76 (665)
T ss_pred             EEEcCccchhheeccCCcEEEEEec----------------------------cceeEeccCCCCccceeeeecC-CCCE
Confidence            4689999999999999999888766                            334445555666776 999966 6899


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHP  116 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~  116 (350)
                      ++.|-.||+|++.|+.++..+..  +.....|.++-|++
T Consensus        77 laVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   77 LAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            99999999999999999998887  55677888888864

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00049  Score=61.39  Aligned_cols=93  Identities=17%  Similarity=0.274  Sum_probs=73.9

Q ss_pred             cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE-EEEecCCe--EEEEeCCCcEE
Q 045370          105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT-ALAFSASH--LISASEDKTVC  181 (350)
Q Consensus       105 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~--l~s~~~dg~v~  181 (350)
                      .+..+..+.|+|.-..||.+..+|.|.+..+..           ..+-.+..|...++ +++|.|+|  |+.|-.||+|+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence            456788999999999999999999988877662           22225555666666 99999999  99999999999


Q ss_pred             EEECCCceEEEEec-cCCCceeEEEEEc
Q 045370          182 LWDVTRRVSIRRFN-HKKGVVTNLVVIR  208 (350)
Q Consensus       182 iwd~~~~~~~~~~~-~~~~~v~~l~~~~  208 (350)
                      +.|..++..+.... ....+|.++.|.+
T Consensus        88 L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCCceeccccccccchheeeccc
Confidence            99999998887732 2456788888863

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.52  E-value=0.03  Score=47.02  Aligned_cols=153  Identities=15%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      -...++.|+.|..+| +.+++...                          .......  .+...|..+...+.-+.+++.
T Consensus         3 ~~~~~~~L~vGt~~G-l~~~~~~~--------------------------~~~~~~i--~~~~~I~ql~vl~~~~~llvL   53 (275)
T PF00780_consen    3 ADSWGDRLLVGTEDG-LYVYDLSD--------------------------PSKPTRI--LKLSSITQLSVLPELNLLLVL   53 (275)
T ss_pred             cccCCCEEEEEECCC-EEEEEecC--------------------------CccceeE--eecceEEEEEEecccCEEEEE
Confidence            345678999999988 88888831                          1111111  122338888887754433333


Q ss_pred             EeCCCcEEEEeCCCCceEE---------------EEecCCceeEEE--EcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           83 SSLDATCKVWDLGSGILIQ---------------TQVYPQAVTAIA--FHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~---------------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                        .|+.+.++++..-....               .+.....+...+  -...+...++......|.+|.........   
T Consensus        54 --sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f---  128 (275)
T PF00780_consen   54 --SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF---  128 (275)
T ss_pred             --cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc---
Confidence              36999999987644333               122233444444  11233344444445688888876421100   


Q ss_pred             cccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEE
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  193 (350)
                        ....+.+. -...+.+++|.++.++.|..++ ..+.|+.++....-
T Consensus       129 --~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l  172 (275)
T PF00780_consen  129 --SKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSEL  172 (275)
T ss_pred             --cceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEE
Confidence              01222222 3478899999988777777554 77889997665443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.49  E-value=0.039  Score=45.05  Aligned_cols=135  Identities=10%  Similarity=0.057  Sum_probs=82.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ..+....-.++...+||..+.+.+..+..++.-..++.  ++..|+..+....++++|..+........+.     .-..
T Consensus       100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-----~~g~  172 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-----DNGR  172 (264)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-----ETTE
T ss_pred             CEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEE-----ECCE
Confidence            34555556788999999999999998888887788874  6778888877889999998876544322221     0011


Q ss_pred             cCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc---------------CCCceeEEEEEccCCeEEeeec
Q 045370          157 HNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH---------------KKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       157 ~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .-..++-+.+.... +|=.-....|...|..+|+++..+..               .......++++|....|..++.
T Consensus       173 pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  173 PVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             E---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             ECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            12345566666433 33333455677778888888776521               1346899999998776655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.45  E-value=3.2e-05  Score=68.74  Aligned_cols=111  Identities=17%  Similarity=0.281  Sum_probs=74.2

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEe-CCcccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSP-LKFLLLED  142 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~  142 (350)
                      ....+++|. .+..++.+|...+.+.++|++........-....+..+.++| .++++++-. ||.|-+|| .++.+   
T Consensus       155 ~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---  229 (783)
T KOG1008|consen  155 DGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---  229 (783)
T ss_pred             cCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc---
Confidence            444577886 577888999999999999998433222222334567788888 777777666 99999999 33221   


Q ss_pred             ccccccccceeee----ccCCceEEEEecCCe---EEEEeC-CCcEEEEECC
Q 045370          143 HFIVGEDQHSVLK----GHNGSITALAFSASH---LISASE-DKTVCLWDVT  186 (350)
Q Consensus       143 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~---l~s~~~-dg~v~iwd~~  186 (350)
                            .++..+.    .....+..++|+|..   +++... .++|+++|+.
T Consensus       230 ------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  230 ------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence                  1111111    122358899999965   666665 4789999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.025  Score=50.30  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec---CCce-----eEEEEcCCCcEEEEEc
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY---PQAV-----TAIAFHPGEQLLFAGS  125 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~v-----~~~~~~~~~~~l~~~~  125 (350)
                      +..+....-..+.+.++.|.. + ..|+....||.++++|+.... ...+..   ...|     ....+..+|-.++  .
T Consensus        70 G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t  144 (410)
T PF04841_consen   70 GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--T  144 (410)
T ss_pred             CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEE--C
Confidence            344444433338999999965 3 456777899999999987333 212211   1122     2223333443333  3


Q ss_pred             cCCeEEEEeCCcccccccccccccccee--eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370          126 IDGRIFVSPLKFLLLEDHFIVGEDQHSV--LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV  201 (350)
Q Consensus       126 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  201 (350)
                      .++.+++.+--........ ....+...  ...+.....-..++.+.  .+....++.+.+.+-.....   +. ..+++
T Consensus       145 ~~~~~~~v~n~~~~~~~~~-~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i  219 (410)
T PF04841_consen  145 GNNRFYVVNNIDEPVKLRR-LPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPI  219 (410)
T ss_pred             CCCeEEEEeCccccchhhc-cccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCe
Confidence            4555544432211100000 00000000  00111100001222222  33333444555443322211   22 24689


Q ss_pred             eEEEEEccCCeEEeeecCcccccc
Q 045370          202 TNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ..++.||+++++|.-..++.+|-.
T Consensus       220 ~~iavSpng~~iAl~t~~g~l~v~  243 (410)
T PF04841_consen  220 IKIAVSPNGKFIALFTDSGNLWVV  243 (410)
T ss_pred             EEEEECCCCCEEEEEECCCCEEEE
Confidence            999999999999977777665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.43  E-value=0.012  Score=52.27  Aligned_cols=118  Identities=8%  Similarity=0.002  Sum_probs=68.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEE--EEcC--CCcEEEEEccCCeEEEEeCCccccccccccccccc-e
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAI--AFHP--GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-S  152 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~  152 (350)
                      ..++.+..++.|.-+|..+|+.+.......+...+  .-+|  .+..++.++.+|.+..+|..+++............ .
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~  240 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT  240 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence            34666778899999999999988876543221110  0112  23456777889999999988776543221110000 0


Q ss_pred             eeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370          153 VLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      .+..-...........+.++.++.+|.++-+|..+|+.+....
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~  283 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE  283 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence            0000000001111222337777889999999999998887654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.0054  Score=54.47  Aligned_cols=149  Identities=18%  Similarity=0.100  Sum_probs=91.0

Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCC---CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCe--EEE
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLD---ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGR--IFV  132 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i  132 (350)
                      .+..-...+..-.|.+....+....-..   ..+.++++.++.........+.-..-+|+|||+.|+. ...||.  |++
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            3334445555566766444433332222   3589999999988777777777778899999987664 455664  555


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCc--EEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                      +|+....           ...+....+.-+.-.|+|+|   +++.+..|.  |.++|...+.. ..+....+.-..-.|+
T Consensus       267 ~dl~~~~-----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~S  334 (425)
T COG0823         267 MDLDGKN-----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWS  334 (425)
T ss_pred             EcCCCCc-----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCC
Confidence            5666432           12233333334466799999   445555554  66667766554 3333223332367899


Q ss_pred             ccCCeEEeeecC
Q 045370          208 RQSSLLSEVSNC  219 (350)
Q Consensus       208 ~~~~~l~~~~~~  219 (350)
                      |+|++++..+..
T Consensus       335 pdG~~i~~~~~~  346 (425)
T COG0823         335 PDGDKIVFESSS  346 (425)
T ss_pred             CCCCEEEEEecc
Confidence            999998877743

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.37  E-value=0.0069  Score=57.30  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             cccceeeeccccCC-ceEEEEeeC----CCcEEEEEeCCCcEEEEeCCCCc--eEEE----EecCCceeEEEEcCCCcEE
Q 045370           53 LRSLLHYSLEHKSS-VTGLLTISG----GTTFFVSSSLDATCKVWDLGSGI--LIQT----QVYPQAVTAIAFHPGEQLL  121 (350)
Q Consensus        53 ~~~~~~~~~~h~~~-v~~~~~~~~----~~~~l~s~~~d~~v~vwd~~~~~--~~~~----~~~~~~v~~~~~~~~~~~l  121 (350)
                      .+..+..+..|... |..++-...    .....+.|-.+..+..||++-..  ++..    +.......|++-+.+ .+|
T Consensus       513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~i  591 (794)
T PF08553_consen  513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYI  591 (794)
T ss_pred             CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceE
Confidence            35666666666544 666543211    12345678888999999988632  3322    234456777776644 588


Q ss_pred             EEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEEC
Q 045370          122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDV  185 (350)
Q Consensus       122 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~  185 (350)
                      ++|+.+|.|++||-- +         ......+++-..+|..|..+.+| .+.+..+..|.+++.
T Consensus       592 avgs~~G~IRLyd~~-g---------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  592 AVGSNKGDIRLYDRL-G---------KRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             EEEeCCCcEEeeccc-c---------hhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            999999999999932 1         12223566778999999999999 444455778888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.36  E-value=0.03  Score=48.28  Aligned_cols=111  Identities=15%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCC--ceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      ....++|.+++..  ++. ++.+ .++.|.+|++...+ ....-.+..  .+.++..  .++++++|+....+.++..+.
T Consensus        85 ~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   85 TEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred             EeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence            4557899999876  344 4443 35889999999888 555543333  4555554  467999999888888875442


Q ss_pred             ccccccccccccccee--eeccCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370          138 LLLEDHFIVGEDQHSV--LKGHNGSITALAFSASH--LISASEDKTVCLWDVT  186 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~  186 (350)
                      .         ...+..  -......++++.+-+++  ++.+..+|.+.++...
T Consensus       159 ~---------~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  159 E---------NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             T---------TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             c---------CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            1         000111  12234568888887443  9999999999999775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.03  Score=52.29  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCC---C-C-ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLG---S-G-ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~---~-~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      ..++.+++.+. +-..+|.|-.+|.|..+.=+   . | +.........+|+.+.+..++..++-+..-..|.+|.+...
T Consensus       125 ~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  125 PSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             CCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence            45566666644 56789999999999887522   1 1 11222345679999999988886333333567889988731


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCC
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKG  199 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~  199 (350)
                               ......+..|+..++|-.+++..  +++++ +..|.+||.....+...+. +|..
T Consensus       204 ---------~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  204 ---------TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             ---------CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence                     12233467888999999999876  66555 4479999998877777776 5543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.062  Score=47.45  Aligned_cols=142  Identities=13%  Similarity=0.175  Sum_probs=100.0

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCCcccccc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFLLLED  142 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  142 (350)
                      ....++.++.....+++...++.|.+.|..+...............++++|+++.++++..   ++.+.+.|-.+.....
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3445666666666777777789999999988888888776668889999999988877765   6788888877544332


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEE-E----eccCCCceeEEEEEccCCeEE
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIR-R----FNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~-~----~~~~~~~v~~l~~~~~~~~l~  214 (350)
                                ....-..+ ..++++|++   +++-..++.|.+.|..+..... .    +.. ......+.++|+|..+.
T Consensus       155 ----------~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~y  222 (381)
T COG3391         155 ----------TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVY  222 (381)
T ss_pred             ----------EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEE
Confidence                      21111123 889999999   4444578999999987766553 1    221 23346788999999776


Q ss_pred             eeecC
Q 045370          215 EVSNC  219 (350)
Q Consensus       215 ~~~~~  219 (350)
                      +....
T Consensus       223 V~~~~  227 (381)
T COG3391         223 VANDG  227 (381)
T ss_pred             EEecc
Confidence            55544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.096  Score=44.46  Aligned_cols=125  Identities=16%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             EEEeCC-CCceEEEEe-cCCceeEEEEcCCCcEEEEEccC-CeEEEEeCCccccccccccccccceeeeccCCceEEEEe
Q 045370           90 KVWDLG-SGILIQTQV-YPQAVTAIAFHPGEQLLFAGSID-GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF  166 (350)
Q Consensus        90 ~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (350)
                      .+|.+. .+....... +-...+.++|+||++.++.+... +.|+-|++......   .........+....+..-.++.
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~---~~~~~~~~~~~~~~G~PDG~~v  220 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP---IGGRRGFVDFDEEPGLPDGMAV  220 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc---cCCcceEEEccCCCCCCCceEE
Confidence            345444 455444433 24567789999999888877654 88888887631100   0011111222234566667777


Q ss_pred             cCCe-EEEEe-CCC-cEEEEECCCceEEEEeccCCCceeEEEEE-ccCCeEEeeec
Q 045370          167 SASH-LISAS-EDK-TVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSLLSEVSN  218 (350)
Q Consensus       167 ~~~~-l~s~~-~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~  218 (350)
                      ..+| +.++. .+| .|..|+.. ++.+..+..+...+++++|- |+.+.|+.++.
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            7777 65344 333 89999998 99998888666788888886 44555554444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.00051  Score=63.43  Aligned_cols=104  Identities=22%  Similarity=0.331  Sum_probs=78.2

Q ss_pred             EEeeCCCcEEEEEe----CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           71 LTISGGTTFFVSSS----LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        71 ~~~~~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .|+| ...+++.++    ..|+|-||- ++|++-.....+-.++++||||..-.|+.|-.-|.+.+|.....+       
T Consensus        22 SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-------   92 (1416)
T KOG3617|consen   22 SWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-------   92 (1416)
T ss_pred             ccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-------
Confidence            3444 444555543    357787774 556655555555667889999998899999989999999877432       


Q ss_pred             ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT  186 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~  186 (350)
                         .......|+.+|..+.|+|+|  ++++..-|.|.+|...
T Consensus        93 ---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 ---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence               223456799999999999999  9999999999999765

>smart00320 WD40 WD40 repeats

Probab=97.24  E-value=0.00068  Score=36.85  Aligned_cols=33  Identities=55%  Similarity=0.898  Sum_probs=28.7

Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWD  184 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd  184 (350)
                      ..+..|...|.++.|++..  +++++.|+.+++||
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3556788899999999876  99999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.24  E-value=0.0016  Score=35.29  Aligned_cols=31  Identities=32%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP  134 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  134 (350)
                      .|...+.++.|++.+..+++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.23  E-value=0.016  Score=56.03  Aligned_cols=152  Identities=11%  Similarity=0.127  Sum_probs=96.6

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      .+.|.++.|.. +..-++.+..+|.|.+-|..+......-.....|.+++|+||+..++..+..+++.+-+-.-......
T Consensus        68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            36889998876 45567778889999999988876665556778999999999999999999888877644311000000


Q ss_pred             cc-------------cccccceeeec---------------------cCCceEEEEecCCe--EEEE----eCC-CcEEE
Q 045370          144 FI-------------VGEDQHSVLKG---------------------HNGSITALAFSASH--LISA----SED-KTVCL  182 (350)
Q Consensus       144 ~~-------------~~~~~~~~~~~---------------------~~~~i~~~~~~~~~--l~s~----~~d-g~v~i  182 (350)
                      ..             .-+.....+.+                     -...=+.+.|-.+|  +++.    -.+ ..|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            00             00000001111                     11223458899888  4431    234 78999


Q ss_pred             EECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          183 WDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       183 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      ||-. |.+-..-....+.=.+++|-|.|.++++..
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq  260 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ  260 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeee
Confidence            9987 443333233344557789999999988654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.23  E-value=0.011  Score=52.86  Aligned_cols=138  Identities=12%  Similarity=0.032  Sum_probs=74.5

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEE-eCCccc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS-PLKFLL  139 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~  139 (350)
                      ......+..+.++| ++++++. +.||.-.++.....+...    .+.....+|.+.+ .+++-...+.|.++ ++... 
T Consensus        29 g~~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~-  100 (443)
T PF04053_consen   29 GSCEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE-  100 (443)
T ss_dssp             EE-SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--
T ss_pred             CCCCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccc-
Confidence            34445678888866 6676666 457878888744333322    2455678899844 46666668889996 33211 


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                                ....+.. +..+..+-.   | ++....++.|.+||..+++.+.++...  +|..+.|+++|.+++..+.
T Consensus       101 ----------~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  101 ----------VVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             ----------TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred             ----------cceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence                      1001111 112333322   5 333444558999999999999999843  4899999999999998877


Q ss_pred             Cccc
Q 045370          219 CQRK  222 (350)
Q Consensus       219 ~~~~  222 (350)
                      +...
T Consensus       165 ~~i~  168 (443)
T PF04053_consen  165 DSIY  168 (443)
T ss_dssp             -SEE
T ss_pred             CeEE
Confidence            6433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.20  E-value=0.09  Score=43.04  Aligned_cols=161  Identities=14%  Similarity=0.073  Sum_probs=90.1

Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      .+.+-...+.+++|.+.++.++++....+.|...+.. |+.+..+..  .+....|++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3455666799999998778888888888888888864 788887653  3568899998888777777678999999885


Q ss_pred             ccccccc-cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC---ceEEEEe--------ccCCCcee
Q 045370          137 FLLLEDH-FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR---RVSIRRF--------NHKKGVVT  202 (350)
Q Consensus       137 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~---~~~~~~~--------~~~~~~v~  202 (350)
                      ....... .....-.......+...+-.++|+|.+  |+.+-+..-..+|.+..   ...+...        ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            3221100 000000000112345568899999976  77777776667776653   2111111        12344688


Q ss_pred             EEEEEccCCeEEeeecCc
Q 045370          203 NLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~~  220 (350)
                      +++++|....|..-|...
T Consensus       175 ~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             EEEEETTTTEEEEEETTT
T ss_pred             ceEEcCCCCeEEEEECCC
Confidence            999999865444445443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.19  E-value=0.061  Score=49.28  Aligned_cols=138  Identities=15%  Similarity=0.121  Sum_probs=77.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE------------------ccCCeEEEEeCCcccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG------------------SIDGRIFVSPLKFLLL  140 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~  140 (350)
                      .++.++.+|.+...|..+|+.+.......  ..+..+|  ..++.+                  ..+|.+.-.|+.+++.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            57788899999999999999888754321  1233344  333332                  2357788888887765


Q ss_pred             ccccccccccce-eeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCcee-EEEEEccCC-eEEeee
Q 045370          141 EDHFIVGEDQHS-VLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVT-NLVVIRQSS-LLSEVS  217 (350)
Q Consensus       141 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~~~~~-~l~~~~  217 (350)
                      ............ .+... .....+....+.++.++.||.|+.+|..+|+.+.+++....... -+.+..+++ ++++.+
T Consensus       379 ~W~~~~~~~~~~~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~  457 (488)
T cd00216         379 VWEKREGTIRDSWNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMV  457 (488)
T ss_pred             eeEeeCCccccccccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEe
Confidence            433211100000 00000 00112333444488889999999999999999998864222211 133445665 444333


Q ss_pred             cCcc
Q 045370          218 NCQR  221 (350)
Q Consensus       218 ~~~~  221 (350)
                      ...+
T Consensus       458 g~~~  461 (488)
T cd00216         458 GGGG  461 (488)
T ss_pred             cCCc
Confidence            3333

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.09  E-value=0.16  Score=43.82  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             CcEEEEEeC----------CCcEEEEeCCCC-----c--eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           77 TTFFVSSSL----------DATCKVWDLGSG-----I--LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        77 ~~~l~s~~~----------d~~v~vwd~~~~-----~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      ..+++.|..          .|.|.++++...     +  .+.....+++|++++-- ++. |+++. ++.|.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            466776643          288999999984     2  23335678899999876 444 44443 5899999998544


Q ss_pred             -cccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCC-ceEEEEec--cCCCceeEEEEEccCCeEEe
Q 045370          140 -LEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTR-RVSIRRFN--HKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~~  215 (350)
                       ...         .........+.++....+.++.|.....+.++.... ...+..+.  .....++++.|.+++..+++
T Consensus       119 ~l~~---------~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~  189 (321)
T PF03178_consen  119 TLLK---------KAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV  189 (321)
T ss_dssp             SEEE---------EEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred             cchh---------hheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence             111         122223347888888888888888878888774432 23232332  23456889999977777776


Q ss_pred             eecCcccccc
Q 045370          216 VSNCQRKLKK  225 (350)
Q Consensus       216 ~~~~~~~~~~  225 (350)
                      +..++.++-.
T Consensus       190 ~D~~gnl~~l  199 (321)
T PF03178_consen  190 GDKDGNLFVL  199 (321)
T ss_dssp             EETTSEEEEE
T ss_pred             EcCCCeEEEE
Confidence            7777655543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.96  E-value=0.091  Score=42.34  Aligned_cols=63  Identities=19%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeE-EEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTA-IAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      +++++.|+..|.+.+.+.++|.....+...+.|.+ ...++++..|+.|+.|+..+..|.++..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence            46799999999999999999987777654444443 3456799999999999999999998543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.0044  Score=59.02  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=76.8

Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEEC
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      ++..++..-.+..++.|+..|.+-..|....-         .+...-..-.++|++++|+.+|  ++.|-.+|.|.+||+
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL---------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~  159 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL---------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM  159 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhccc---------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence            33444443456788889988999888877421         1111112335799999999999  778889999999999


Q ss_pred             CCceEEEEeccCCCceeEEEE---EccCCeEEeeecCccccccc
Q 045370          186 TRRVSIRRFNHKKGVVTNLVV---IRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       186 ~~~~~~~~~~~~~~~v~~l~~---~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ..+++++.+..|..+.+++-+   ..++..++++...|..|...
T Consensus       160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv  203 (1206)
T KOG2079|consen  160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLV  203 (1206)
T ss_pred             cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEE
Confidence            999999988877666665544   44556677676666565543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.085  Score=44.77  Aligned_cols=143  Identities=8%  Similarity=-0.059  Sum_probs=85.0

Q ss_pred             EEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370           71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        71 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      .|.+..+.++.+--..+.|.-|+..++... .+..++.+.++..-..+..|+++..  -+.+++...+........    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~----  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE----  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc----
Confidence            466655566777777888999998866533 3555555566555555556655543  345555543322110000    


Q ss_pred             ceeeec-cCCceEEEEecCCe-EEEEeCC------------CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          151 HSVLKG-HNGSITALAFSASH-LISASED------------KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       151 ~~~~~~-~~~~i~~~~~~~~~-l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                        ...+ .....+.+...|+| +..+...            |.|+-+|. .+..+..+..+-..-..|+||||++.|+.+
T Consensus       104 --~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         104 --PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             --ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence              1111 12456778888888 6666544            33555554 466666666556667899999999888877


Q ss_pred             ecCcccc
Q 045370          217 SNCQRKL  223 (350)
Q Consensus       217 ~~~~~~~  223 (350)
                      ....+.+
T Consensus       181 DT~~~~i  187 (307)
T COG3386         181 DTPANRI  187 (307)
T ss_pred             eCCCCeE
Confidence            7664333

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.88  E-value=0.0058  Score=47.98  Aligned_cols=105  Identities=10%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      +.-+++|+.+|.|.+|++...                          +........-...|.+....-.++.+.++++.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~--------------------------g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~d  123 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE--------------------------GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQD  123 (238)
T ss_pred             CceEEeecccceEEEecCCcc--------------------------chHHHhhhcccccceeccccccccceeEEeccC
Confidence            346788889999999987621                          111111122233444433222334588999999


Q ss_pred             CcEEEEeCCCCceEEEEe-cC-CceeEEEEcCCCcEEEEE--ccCCeEEEEeCCc
Q 045370           87 ATCKVWDLGSGILIQTQV-YP-QAVTAIAFHPGEQLLFAG--SIDGRIFVSPLKF  137 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  137 (350)
                      |.|+.|++.-++.+.... |. .++........+..+..+  |.|..++.|++..
T Consensus       124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            999999999887776654 33 344444444445555555  5566666666653

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.80  E-value=0.093  Score=48.94  Aligned_cols=113  Identities=9%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeC---CccccccccccccccceeeeccCCceEEE
Q 045370           88 TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL---KFLLLEDHFIVGEDQHSVLKGHNGSITAL  164 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  164 (350)
                      .+.+.++..+....  .....|..+.|+|||..++... +|.|++--+   ..+.    ..+ ........+-...+..+
T Consensus       431 ql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~----~~l-~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        431 QLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ----YAL-TNPREVGPGLGDTAVSL  502 (591)
T ss_pred             eEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc----eee-cccEEeecccCCccccc
Confidence            34333554443322  3456799999999999888766 577777322   2221    000 01111112233446889


Q ss_pred             EecCCe-EEEEeCCCcEEEEECCC-ceEEEEecc--CCCceeEEEEEc
Q 045370          165 AFSASH-LISASEDKTVCLWDVTR-RVSIRRFNH--KKGVVTNLVVIR  208 (350)
Q Consensus       165 ~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~  208 (350)
                      .|.+++ |+++..++...+|.+.- |.....+..  ...++.+++-++
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence            999998 77766655555554332 222222222  245677777766

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.78  E-value=0.055  Score=47.31  Aligned_cols=161  Identities=12%  Similarity=0.100  Sum_probs=87.5

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            4 SDDGFLLISGS---------DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         4 s~dg~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      |||+++++...         ..+.+.|||+++                            .....+......+....|+|
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~----------------------------~~~~~l~~~~~~~~~~~~sP   52 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET----------------------------GEITPLTPPPPKLQDAKWSP   52 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT----------------------------TEEEESS-EETTBSEEEE-S
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC----------------------------CceEECcCCccccccceeec
Confidence            78999888743         246777888872                            22222222266777888866


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEec------------------CCceeEEEEcCCCcEEEEEccC-CeEEEEeC
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVY------------------PQAVTAIAFHPGEQLLFAGSID-GRIFVSPL  135 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~  135 (350)
                       +++.++-.. ++.|.+++..++...+....                  -+.-..+-|+||+++|+....| ..|..+.+
T Consensus        53 -~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   53 -DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             -SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             -CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence             577766664 68899999887744432111                  1234678899999998876543 55555544


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCC--cEEEEECCCceEEE--Ee---ccCCCceeEEEEEc
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDK--TVCLWDVTRRVSIR--RF---NHKKGVVTNLVVIR  208 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~--~~---~~~~~~v~~l~~~~  208 (350)
                      ........             .-..+..+.+-.-|    ..+-  .+.|+|+.+++...  ..   ......+..+.|.+
T Consensus       131 ~~~~~~~~-------------~yp~~~~~~YPk~G----~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~  193 (353)
T PF00930_consen  131 PDYSPPDS-------------QYPEVESIRYPKAG----DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP  193 (353)
T ss_dssp             EEESSSTE-------------SS-EEEEEE--BTT----S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE
T ss_pred             eccCCccc-------------cCCcccccccCCCC----CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC
Confidence            32110000             00123333332111    1111  46678888776432  11   22345788999999


Q ss_pred             cCC
Q 045370          209 QSS  211 (350)
Q Consensus       209 ~~~  211 (350)
                      ++.
T Consensus       194 d~~  196 (353)
T PF00930_consen  194 DGK  196 (353)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.72  E-value=0.027  Score=51.65  Aligned_cols=81  Identities=16%  Similarity=0.088  Sum_probs=60.6

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce------------EEEEecCCceeEEEEcCCCcEEEEE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL------------IQTQVYPQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~  124 (350)
                      +..+..-......+.++|.+...++++..+.+|.|.|+.+.+.            .............+|+++|+.+.+.
T Consensus       313 v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytsl  392 (635)
T PRK02888        313 LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTL  392 (635)
T ss_pred             eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeE
Confidence            3334445667788888775555566777799999999987542            3334445566788999999988888


Q ss_pred             ccCCeEEEEeCCc
Q 045370          125 SIDGRIFVSPLKF  137 (350)
Q Consensus       125 ~~dg~i~i~d~~~  137 (350)
                      ..|..|..|++..
T Consensus       393 f~dsqv~kwn~~~  405 (635)
T PRK02888        393 FLDSQIVKWNIEA  405 (635)
T ss_pred             eecceeEEEehHH
Confidence            8999999999886

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.71  E-value=0.37  Score=42.18  Aligned_cols=209  Identities=12%  Similarity=0.064  Sum_probs=100.7

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCcccccccc------c---cccccccccccEEEeecccccc-ceeee---ccccCC
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTS------E---LMHHSDQLDQRLIEMELRSLRS-LLHYS---LEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~h~~~   66 (350)
                      +.|||||++||.... +..|..+.+........      .   ...........+...+...... .+...   ..-...
T Consensus       106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y  185 (353)
T PF00930_consen  106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY  185 (353)
T ss_dssp             EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred             eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC
Confidence            369999999987765 45666665543211111      0   0011111222333333322221 11111   234566


Q ss_pred             ceEEEEeeCCCcEEE-EEeCCC---cEEEEeCCCCceEEEEe--cCCc---eeEEEEc-CCCc-EEEEEccCCeEEEEeC
Q 045370           67 VTGLLTISGGTTFFV-SSSLDA---TCKVWDLGSGILIQTQV--YPQA---VTAIAFH-PGEQ-LLFAGSIDGRIFVSPL  135 (350)
Q Consensus        67 v~~~~~~~~~~~~l~-s~~~d~---~v~vwd~~~~~~~~~~~--~~~~---v~~~~~~-~~~~-~l~~~~~dg~i~i~d~  135 (350)
                      +..+.|.+.+..+++ ....+.   .+.+.|..++.......  ....   -....|. +++. ++.....+|.-++|-+
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            788889775442333 333333   36677887766544432  2222   2355554 5544 5555556775555444


Q ss_pred             CccccccccccccccceeeeccCCceEE-EEecCCe---EEEEeCC----CcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITA-LAFSASH---LISASED----KTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                      ...         ......++...-.|+. +.+++++   ++++..+    ..|+.-++..+..+..+....+.-..+.||
T Consensus       266 ~~~---------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  266 DLD---------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             ETT---------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             ccc---------ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            321         1112244444555655 5677775   5566553    356666777334445555333333689999


Q ss_pred             ccCCeEEeeec
Q 045370          208 RQSSLLSEVSN  218 (350)
Q Consensus       208 ~~~~~l~~~~~  218 (350)
                      |++++++..+.
T Consensus       337 pdg~y~v~~~s  347 (353)
T PF00930_consen  337 PDGKYYVDTYS  347 (353)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEc
Confidence            99998886554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.69  E-value=0.008  Score=34.82  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      .....|.+++|+|...+|+.++.+|.|.+|.+.
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            345679999999999999999999999999884

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.0072  Score=57.63  Aligned_cols=93  Identities=22%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCce--EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           77 TTFFVSSSLDATCKVWDLGSGIL--IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +.+++.|+..|.|...|+...-.  .+.....++|++++|+.+|..++.|-.+|.|.+||....+          ..+.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----------~l~~i  168 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----------ILKVI  168 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----------ceeee
Confidence            35688899999999999876421  2223456799999999999999999999999999998543          33344


Q ss_pred             eccCCceEEEEe----cCCe-EEEEeCCCc
Q 045370          155 KGHNGSITALAF----SASH-LISASEDKT  179 (350)
Q Consensus       155 ~~~~~~i~~~~~----~~~~-l~s~~~dg~  179 (350)
                      ..|..+.+.+-+    +.+. ++++...|.
T Consensus       169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             eecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            444444444332    2333 667666665

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.07  Score=47.33  Aligned_cols=122  Identities=12%  Similarity=0.018  Sum_probs=77.7

Q ss_pred             cccceeeeccccCCceEEEEeeCCC------cEEEEEeCCCcEEEEeCCCCce--EE-E----EecCCceeEEEEcCCCc
Q 045370           53 LRSLLHYSLEHKSSVTGLLTISGGT------TFFVSSSLDATCKVWDLGSGIL--IQ-T----QVYPQAVTAIAFHPGEQ  119 (350)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~------~~l~s~~~d~~v~vwd~~~~~~--~~-~----~~~~~~v~~~~~~~~~~  119 (350)
                      .+..+..+.-|.+ |.-+.+.|...      ..-+.|-.|..|.-||++-...  +. .    +.......|.+-.. ..
T Consensus       365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG  442 (644)
T KOG2395|consen  365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SG  442 (644)
T ss_pred             cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-Cc
Confidence            3555666665655 44444433211      1234577889999999884322  11 1    22334455655543 45


Q ss_pred             EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                      +|++|+.+|.|++||-- +         ......+++-..+|..+..+.+| .+.|..+..+.+-|+.
T Consensus       443 ~IvvgS~~GdIRLYdri-~---------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDRI-G---------RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eEEEeecCCcEEeehhh-h---------hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            89999999999999963 2         22222667788999999999999 5556667788888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.53  E-value=0.053  Score=47.79  Aligned_cols=118  Identities=19%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc-c-----c---------------------------ccccccceee
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED-H-----F---------------------------IVGEDQHSVL  154 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~-----~---------------------------~~~~~~~~~~  154 (350)
                      .|+.+.|.++...|++|...|.|.+|......... .     .                           ...-.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999999999999999999998765433221 0     0                           0001122234


Q ss_pred             eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec--c------CCCceeEEEEEc-----cC---CeEEeee
Q 045370          155 KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN--H------KKGVVTNLVVIR-----QS---SLLSEVS  217 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~l~~~~-----~~---~~l~~~~  217 (350)
                      ....++|++++.+.-| ++.|.++|.+.|.|+|....+..-.  .      ....++++.|+.     |+   -.|++|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            4557899999999888 8889999999999999988887632  1      233688888873     22   3566666


Q ss_pred             cCcccccc
Q 045370          218 NCQRKLKK  225 (350)
Q Consensus       218 ~~~~~~~~  225 (350)
                      +.+.++.+
T Consensus       163 n~G~v~~f  170 (395)
T PF08596_consen  163 NSGNVLTF  170 (395)
T ss_dssp             TTSEEEEE
T ss_pred             CCCCEEEE
Confidence            66655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.50  E-value=0.33  Score=44.50  Aligned_cols=111  Identities=13%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             CCCcEEEEeCCCCceEEEEecCCc---------------------e-eEEEEcCCCcEEEEEccCC--------------
Q 045370           85 LDATCKVWDLGSGILIQTQVYPQA---------------------V-TAIAFHPGEQLLFAGSIDG--------------  128 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~~~---------------------v-~~~~~~~~~~~l~~~~~dg--------------  128 (350)
                      .++.|..+|..+|+.+........                     + ...++++.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            468899999999998877543210                     0 1234455567788887665              


Q ss_pred             ----eEEEEeCCccccccccccccccceeeeccCCce-EEEE-ecCC--e-EEEEeCCCcEEEEECCCceEEEEec
Q 045370          129 ----RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI-TALA-FSAS--H-LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       129 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~-~~~~--~-l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                          .|.-+|..+++..............+.....++ ..+. ....  . ++.++.+|.++..|.++|+.+....
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence                688889888776543221111000011111111 1111 1112  1 7778889999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.42  E-value=0.15  Score=41.75  Aligned_cols=164  Identities=15%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             eecCCCCEEEEEeCC-----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            2 VFSDDGFLLISGSDD-----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      .|||||.+|+..-.|     |.|-|||....                          ...+..+..|.-....+.+.+ +
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------fqrvgE~~t~GiGpHev~lm~-D  172 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------FQRVGEFSTHGIGPHEVTLMA-D  172 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------cceecccccCCcCcceeEEec-C
Confidence            589999998765433     78999998731                          233444556666666777755 5


Q ss_pred             CcEEEEEeC------------------CCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEE--
Q 045370           77 TTFFVSSSL------------------DATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIF--  131 (350)
Q Consensus        77 ~~~l~s~~~------------------d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~--  131 (350)
                      +..++.+.-                  .-++.+.|..+|.++....     +.-.+..++..++|+..+.+-..|--.  
T Consensus       173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~  252 (366)
T COG3490         173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL  252 (366)
T ss_pred             CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence            555544321                  1123445555565554432     234577788887777665543322110  


Q ss_pred             ---EEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec
Q 045370          132 ---VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       132 ---i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                         +=-...++.........+   ........|-+++.+.+.   .+|+-..+..-+||..+|..+..-.
T Consensus       253 ppLvg~~~~g~~l~~~~~pee---~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         253 PPLVGHFRKGEPLEFLDLPEE---QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             CcceeeccCCCcCcccCCCHH---HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence               000000000000000000   111223567778877543   4444456678899999999876543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.35  E-value=0.011  Score=34.26  Aligned_cols=33  Identities=12%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEE
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSI  191 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~  191 (350)
                      ...|.++.|+|..  +|.++.+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            3569999999998  999999999999998 55543

>PHA02713 hypothetical protein; Provisional

Probab=96.31  E-value=0.24  Score=46.16  Aligned_cols=133  Identities=5%  Similarity=0.029  Sum_probs=66.2

Q ss_pred             CCcEEEEEeCCC-----cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCC--------------------
Q 045370           76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDG--------------------  128 (350)
Q Consensus        76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg--------------------  128 (350)
                      ++.+.+.||.++     ++..||..+++....-.  .+..-.+++. -++...+.|+.++                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE-ECCEEEEEeCCCccccccccccccccccccccc
Confidence            567778888764     48889998876544322  2211112222 2577777776542                    


Q ss_pred             ---eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCC------CcEEEEECCC---ceEEEEec
Q 045370          129 ---RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED------KTVCLWDVTR---RVSIRRFN  195 (350)
Q Consensus       129 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d------g~v~iwd~~~---~~~~~~~~  195 (350)
                         .+..||..+.......        .+...... .+++...+. ++.|+.+      ..+..||..+   ...+..+.
T Consensus       430 ~~~~ve~YDP~td~W~~v~--------~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~  500 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLP--------NFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE  500 (557)
T ss_pred             ccceEEEECCCCCeEeecC--------CCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence               4666776654322110        11111111 123333344 5556543      2467899876   34444444


Q ss_pred             cCCCceeEEEEEccCCeEEeeecCc
Q 045370          196 HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       196 ~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ........+++  ++++.+.|+.++
T Consensus       501 ~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        501 SRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             cccccceeEEE--CCEEEEEeeecc
Confidence            32222222222  567667676554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.20  E-value=0.56  Score=38.81  Aligned_cols=148  Identities=16%  Similarity=0.036  Sum_probs=81.3

Q ss_pred             CceEEEEeeCCCcEEEEEe-CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEe-CCccccccc
Q 045370           66 SVTGLLTISGGTTFFVSSS-LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP-LKFLLLEDH  143 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~  143 (350)
                      .+.+.+.++. +..++... .++.-.+|-...+...........+..-.|++++...++...+....++. ...+.....
T Consensus        25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            5677777664 44444333 33333344333333333322344778889999977766666666666663 222111100


Q ss_pred             cccccccceeeeccCCceEEEEecCCe--EE---EEeCCCcEEEEECC---Cc------eEEEEeccCCCceeEEEEEcc
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH--LI---SASEDKTVCLWDVT---RR------VSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~---s~~~dg~v~iwd~~---~~------~~~~~~~~~~~~v~~l~~~~~  209 (350)
                            .+ ....-...|+.+.++|+|  ++   ....++.|.+--+.   .+      ..+.........+..+.|.++
T Consensus       104 ------~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  104 ------EV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             ------Ee-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence                  00 111111289999999999  22   23345777776543   22      111122223468899999999


Q ss_pred             CCeEEeeecCcc
Q 045370          210 SSLLSEVSNCQR  221 (350)
Q Consensus       210 ~~~l~~~~~~~~  221 (350)
                      +.+++.+...+.
T Consensus       177 ~~L~V~~~~~~~  188 (253)
T PF10647_consen  177 STLVVLGRSAGG  188 (253)
T ss_pred             CEEEEEeCCCCC
Confidence            998887766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.20  E-value=0.67  Score=39.50  Aligned_cols=110  Identities=18%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEE--Ee-----------cCCceeEEEEcCCCcEEEEEcc--------CC--eEEE
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQT--QV-----------YPQAVTAIAFHPGEQLLFAGSI--------DG--RIFV  132 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~~--------dg--~i~i  132 (350)
                      .+..++--+.+|.|+--|+........  +.           .++.-.-+++++..+.|++.-.        |+  .|.+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            334455567889888888876653332  21           1234455788876655554321        22  4666


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEE-eCCCcEEEEECCCceEEEEecc
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISA-SEDKTVCLWDVTRRVSIRRFNH  196 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~-~~dg~v~iwd~~~~~~~~~~~~  196 (350)
                      +|+.+          .+.+..+.. ..++.+|..+.+.   |++. ..++.|.+||..+|+.+.++..
T Consensus       274 ~D~~t----------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  274 YDLKT----------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTT----------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EECCC----------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            77764          333444442 1357789998876   5444 4578999999999999999873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.16  E-value=0.27  Score=45.91  Aligned_cols=106  Identities=10%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             CCcEEEEEeCCC-----cEEEEeCCCCceEEEEecCCceeEEEEc-CCCcEEEEEccCC------eEEEEeCCccccccc
Q 045370           76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQVYPQAVTAIAFH-PGEQLLFAGSIDG------RIFVSPLKFLLLEDH  143 (350)
Q Consensus        76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~i~d~~~~~~~~~  143 (350)
                      ++.+.+.||.||     +|..||..+.+....-+........... -+|...++|+.++      .+..||..+......
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            678889999987     4788888877654443222222222222 2677777777554      567777776543321


Q ss_pred             cccccccceeeeccCCceEEEEecCCe-EEEEeCCC-----cEEEEECCCceE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH-LISASEDK-----TVCLWDVTRRVS  190 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg-----~v~iwd~~~~~~  190 (350)
                      .        .+...... ..++.-.+. ++.|+.|+     +|..||..+.+-
T Consensus       460 ~--------~M~~~R~~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  460 A--------PMNTRRSG-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             C--------Cccccccc-ceEEEECCEEEEECCccCCCccceEEEEcCCCCce
Confidence            1        11111111 124444445 77888776     377788877543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.10  E-value=0.66  Score=38.86  Aligned_cols=139  Identities=12%  Similarity=0.087  Sum_probs=81.7

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccc-c---c
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGED-Q---H  151 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---~  151 (350)
                      .++.++.|..+| |.++++..............|..+..-|+-+.+++-+ |+.++++++.............. .   .
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            456788998888 9999994433333344444599999999888777776 59999999986554331100000 0   0


Q ss_pred             eeeeccCCceEEEE--ecCCe--EEEEeCCCcEEEEECCCc-----eEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          152 SVLKGHNGSITALA--FSASH--LISASEDKTVCLWDVTRR-----VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       152 ~~~~~~~~~i~~~~--~~~~~--l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .........+...+  -...+  .++.....+|.+|.....     +..+++. -...+.+++|.  ++.++.+..+
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence            00111223344444  11222  444444558888877652     4556665 34778899998  4555555443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.10  E-value=0.47  Score=44.71  Aligned_cols=103  Identities=11%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC-------C-------------ceEEEEecCCceeEEEEc--CCCcEEEEEccCCeEEEE
Q 045370           76 GTTFFVSSSLDATCKVWDLGS-------G-------------ILIQTQVYPQAVTAIAFH--PGEQLLFAGSIDGRIFVS  133 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~  133 (350)
                      +.+.|+.|..||.|.+|.+.+       .             ++...+..+..++.++++  ...++||+++....|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            457899999999999997631       0             012224456789999998  788899999888888887


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCC-----e---EEEEeCCCcEEEEEC
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS-----H---LISASEDKTVCLWDV  185 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~---l~s~~~dg~v~iwd~  185 (350)
                      -+.......       ....-..|...|-+|.|-++     |   +++++-.|.+.+|++
T Consensus       193 af~l~~~r~-------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERF-------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecccccc-------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            665321100       00001125566778887543     3   777888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.08  E-value=0.34  Score=45.08  Aligned_cols=107  Identities=14%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEc--CCCcEEEEEccCCeEEEEeCCccccccccccccccce-
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFH--PGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS-  152 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  152 (350)
                      ...+.-+....+.|||.+.+......  ...+.|.++.|.  |+++.+++.+-...|.+|--........ ...-.+++ 
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~i~~  120 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAPIRK  120 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-CcccceeEE
Confidence            33333344457899999988866653  458899999996  5888888888889999986532211110 00111111 


Q ss_pred             -eeeccC-CceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          153 -VLKGHN-GSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       153 -~~~~~~-~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                       .+..|+ .+|.+..|.++| +++|+ ++.+.|+|-.
T Consensus       121 i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  121 IDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             EEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence             122333 578999999999 66555 5578898754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.08  E-value=0.3  Score=40.10  Aligned_cols=140  Identities=18%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             eEEEEeeCCCcEEEEEeCCCcE-EEEeCCCCceEEEEec---CCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCcc
Q 045370           68 TGLLTISGGTTFFVSSSLDATC-KVWDLGSGILIQTQVY---PQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFL  138 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~v-~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  138 (350)
                      ..++++|..+.-++.+-.-|+. .++|....+....+..   ..---.=+|+|||.+|+..-.|     |.|-+||.+. 
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence            3456666555556666555553 6788888776655431   1122344699999999987543     7999999984 


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeC------------------CCcEEEEECCCceEEEEec---
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE------------------DKTVCLWDVTRRVSIRRFN---  195 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~------------------dg~v~iwd~~~~~~~~~~~---  195 (350)
                              .-..+-.+..|.-....+.+.+||  ++.+..                  .-.+.+.|..+|.++....   
T Consensus       150 --------~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~  221 (366)
T COG3490         150 --------GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA  221 (366)
T ss_pred             --------ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence                    233444777888888899999999  333321                  0134445555666554432   


Q ss_pred             -cCCCceeEEEEEccCCeEEee
Q 045370          196 -HKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       196 -~~~~~v~~l~~~~~~~~l~~~  216 (350)
                       -+...+..++..++|..++.+
T Consensus       222 ~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         222 SLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             hhhhcceeeeeeCCCCcEEEEE
Confidence             234568888999999887744

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.95  E-value=0.045  Score=43.17  Aligned_cols=140  Identities=12%  Similarity=0.101  Sum_probs=84.3

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      +..-+.||.|.-++++.-+.....  -+...   .....-+..+++|+.+|.|++|.........         ..+..-
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---------d~~~s~  100 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---------DRVCSG  100 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHH---------Hhhhcc
Confidence            444567888888887654322211  11111   2223346789999999999999877211100         011112


Q ss_pred             CCceEEEEec-CCe--EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeEEeee-cCccccccccCCcc
Q 045370          158 NGSITALAFS-ASH--LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLLSEVS-NCQRKLKKDRMPSL  231 (350)
Q Consensus       158 ~~~i~~~~~~-~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~  231 (350)
                      ...|.++-.. .++  ..+++.||.||.|++.-++.+.....|. .++..+..+..++++..+- +-+.+++.|.+.++
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            2333333322 232  7788899999999999888888777777 6777777787888887662 22455555544443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.91  E-value=1.2  Score=39.85  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC-CCceeEEEEEccCCeEE
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK-KGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~  214 (350)
                      .+++..|++||++  +|.-..+|.+.+....-.+.+..+... ......+.|.-+...++
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l  275 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL  275 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence            3689999999998  666677899988877666666666533 34667888877654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.63  Score=36.45  Aligned_cols=129  Identities=9%  Similarity=0.039  Sum_probs=74.0

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec-cC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG-HN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~  158 (350)
                      ..-.-.+|.-..+|.++-+.+..+..++.-..++.  ++..|+.++....++.-|..+........+.      ..+ .-
T Consensus       104 y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT------~~g~pv  175 (262)
T COG3823         104 YQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT------DDGVPV  175 (262)
T ss_pred             EEEEeccceeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE------ECCeec
Confidence            33445678888999999888888887777777765  5566777766677777777665443322111      111 01


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec------------cCCCceeEEEEEccC-CeEEee
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN------------HKKGVVTNLVVIRQS-SLLSEV  216 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~v~~l~~~~~~-~~l~~~  216 (350)
                      ..++.+.|-... +|-.-.+..|...|..+|+.+.-+.            .+......+++.|++ +++++|
T Consensus       176 ~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         176 SKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            122333333322 2222233344444555555544432            245578889999987 555543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.82  E-value=0.39  Score=38.26  Aligned_cols=108  Identities=9%  Similarity=0.013  Sum_probs=67.6

Q ss_pred             cCCceeEEEEcCCCcEEEEE-ccCCeEEEEe--CCccccccccccccccceeeec----cCCceEEEEecCCe--EEEEe
Q 045370          105 YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSP--LKFLLLEDHFIVGEDQHSVLKG----HNGSITALAFSASH--LISAS  175 (350)
Q Consensus       105 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~--l~s~~  175 (350)
                      .-.--+.++|+.+.+.++.. +.+-.|.-||  ..++.......+     ..++.    .....-.++...+|  ++++-
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i-----~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI-----FDLRKSQPFESLEPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCccee-----EEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence            33445678898877766554 4566776676  555554432211     11111    11112234445566  55566


Q ss_pred             CCCcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeee
Q 045370          176 EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVS  217 (350)
Q Consensus       176 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~  217 (350)
                      ..++|...|..+|+.+.++.-....++++||-- +-..+.++.
T Consensus       231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            778999999999999999988888999999974 334555444

>PHA02713 hypothetical protein; Provisional

Probab=95.80  E-value=0.16  Score=47.25  Aligned_cols=92  Identities=8%  Similarity=-0.038  Sum_probs=46.2

Q ss_pred             cEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCc-cccccccccccccceeeeccC
Q 045370           88 TCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKF-LLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      .+..||..+++....  +.....-.+++. -++...+.|+.+      ..+..||..+ .....        +..+....
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~--------~~~m~~~r  503 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL--------ITTTESRL  503 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE--------ccccCccc
Confidence            477888887765433  222211112222 256666667654      2467788775 22211        11222222


Q ss_pred             CceEEEEecCCe-EEEEeCCC--cEEEEECCCce
Q 045370          159 GSITALAFSASH-LISASEDK--TVCLWDVTRRV  189 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg--~v~iwd~~~~~  189 (350)
                      ... +++...+. +++|+.||  .+..||..+.+
T Consensus       504 ~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        504 SAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence            222 23333333 88888887  66777776644

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=0.7  Score=38.24  Aligned_cols=164  Identities=18%  Similarity=0.140  Sum_probs=97.6

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      .+-...+.++.|+|.... |++......-.||=...|+.+.+++..  .....|.|-.++.+.++--.++.++++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            445566999999886555 555555566666666779999887633  34567888878888777777888888877654


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-E--EEEecc-------CCCceeEEEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-S--IRRFNH-------KKGVVTNLVV  206 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~--~~~~~~-------~~~~v~~l~~  206 (350)
                      ...-......-+...........-.++|.|..  |+.+-+-.-+.||...... .  ++....       ....|+++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            21111000000111112224567789999977  8888877777777665322 1  111111       1235788889


Q ss_pred             EccCC-eEEeeecCcccccc
Q 045370          207 IRQSS-LLSEVSNCQRKLKK  225 (350)
Q Consensus       207 ~~~~~-~l~~~~~~~~~~~~  225 (350)
                      ++... +|+.+..+..++.+
T Consensus       241 ~~~~~~LLVLS~ESr~l~Ev  260 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEV  260 (316)
T ss_pred             cCCCCcEEEEecCCceEEEE
Confidence            87654 44444444444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.71  E-value=1.4  Score=38.98  Aligned_cols=139  Identities=13%  Similarity=0.079  Sum_probs=65.3

Q ss_pred             CCCcEEEEeCCCCceEEEEecCC---ceeEEEEcC--CCcEEEEEc-cCCeEEEEeC-Ccccccccccc--ccc------
Q 045370           85 LDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHP--GEQLLFAGS-IDGRIFVSPL-KFLLLEDHFIV--GED------  149 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~--~~~------  149 (350)
                      ...++.+||+.+.+.++.+....   .+..+.|..  +..+=++++ -...|..|-- ..+......++  ..+      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            35679999999999999987542   355677654  444444433 3455555543 22221111111  110      


Q ss_pred             ---cceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC---ceEEEEecc----------------CCCceeEE
Q 045370          150 ---QHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR---RVSIRRFNH----------------KKGVVTNL  204 (350)
Q Consensus       150 ---~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~---~~~~~~~~~----------------~~~~v~~l  204 (350)
                         .+..+..-..-|+.|..|.+.   .+++-.+|.|+.||+..   .+.+.++..                -.+...-|
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv  379 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV  379 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence               011122224668999999887   55666899999999976   344444320                11234678


Q ss_pred             EEEccCCeEEeeecCcccc
Q 045370          205 VVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~~  223 (350)
                      ..|.||+.|..+++--..|
T Consensus       380 qlS~DGkRlYvTnSLys~W  398 (461)
T PF05694_consen  380 QLSLDGKRLYVTNSLYSAW  398 (461)
T ss_dssp             EE-TTSSEEEEE----HHH
T ss_pred             EEccCCeEEEEEeeccccc
Confidence            8999999888776644444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.64  E-value=1.2  Score=37.98  Aligned_cols=150  Identities=15%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             eCCCcEEEEEeCCCcEEEEeCC-CCceEEEEe-----cCCc-eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc--c
Q 045370           74 SGGTTFFVSSSLDATCKVWDLG-SGILIQTQV-----YPQA-VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--F  144 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~-----~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~  144 (350)
                      |..+.-|.+-|.||.+....+. .|+......     ..++ ...-++...+..++-.+.+|.|+-.|+......-.  +
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~  223 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW  223 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence            3334457788889999998888 455543321     1122 22334444555555577889999888875432110  0


Q ss_pred             cc-c-cccceeeeccCCceEEEEecCCe--EEEE---eCCC-------cEEEEECCCceEEEEeccCCCceeEEEEEccC
Q 045370          145 IV-G-EDQHSVLKGHNGSITALAFSASH--LISA---SEDK-------TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       145 ~~-~-~~~~~~~~~~~~~i~~~~~~~~~--l~s~---~~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      .. . .+....+  .++.-.-+++++..  |++-   +.+|       .|.++|+.+++.+.++.. ..++.++..+.+.
T Consensus       224 ~~~t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  224 SLLTDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD  300 (342)
T ss_dssp             ESS-HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred             cccCccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCC
Confidence            00 0 0000000  11222234555432  2221   1121       588889999999999973 3578899999887


Q ss_pred             C-eEEeeecCccccccc
Q 045370          211 S-LLSEVSNCQRKLKKD  226 (350)
Q Consensus       211 ~-~l~~~~~~~~~~~~~  226 (350)
                      + +|++.+.....+.++
T Consensus       301 ~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             S-EEEEEETTTTEEEEE
T ss_pred             CcEEEEEcCCCCeEEEE
Confidence            5 666555443333333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=1.1  Score=37.24  Aligned_cols=185  Identities=13%  Similarity=0.105  Sum_probs=101.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~   79 (350)
                      +.|+|+.+.|++......-.||=..                           .+..++... ..-...-+|.|.. ++.+
T Consensus        91 LTynp~~rtLFav~n~p~~iVElt~---------------------------~GdlirtiPL~g~~DpE~Ieyig-~n~f  142 (316)
T COG3204          91 LTYNPDTRTLFAVTNKPAAIVELTK---------------------------EGDLIRTIPLTGFSDPETIEYIG-GNQF  142 (316)
T ss_pred             eeeCCCcceEEEecCCCceEEEEec---------------------------CCceEEEecccccCChhHeEEec-CCEE
Confidence            5788988877777665555554322                           233333321 1122234456654 5677


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE-----E-----ec-CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQT-----Q-----VY-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE  148 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~-----~-----~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  148 (350)
                      +++--.++.+.++.+.....+..     +     .+ ......++|+|....|+.+=+-.-+.+|........-......
T Consensus       143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~  222 (316)
T COG3204         143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL  222 (316)
T ss_pred             EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence            77777788888887765532211     1     12 4467889999999888888777767777665222110000000


Q ss_pred             ccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCC---------CceeEEEEEccCCeEE
Q 045370          149 DQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKK---------GVVTNLVVIRQSSLLS  214 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~  214 (350)
                      .+.....-.-..|.++.|++..   |+-+.+++.+.-.|... .++..+.-+.         ...-.++..++|.+-+
T Consensus       223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence            0000000112346677788644   66677778777777763 3344432111         1345567777776555

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.60  E-value=1.6  Score=41.03  Aligned_cols=146  Identities=14%  Similarity=0.033  Sum_probs=74.7

Q ss_pred             CCceEEEEeeCCCcEEEEEe------CCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-CeEEEEeC
Q 045370           65 SSVTGLLTISGGTTFFVSSS------LDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-GRIFVSPL  135 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~------~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~  135 (350)
                      ..+.+.+.++ ++..++...      .|.  .|.+++.. +.. ..+........-.|+|+|..+++.... ..+++.+.
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4566777766 555444333      243  45555543 222 223233347888999999888777532 22222221


Q ss_pred             Ccc-ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEE---EECCCce-EE---EEecc-CCCceeEE
Q 045370          136 KFL-LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCL---WDVTRRV-SI---RRFNH-KKGVVTNL  204 (350)
Q Consensus       136 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~i---wd~~~~~-~~---~~~~~-~~~~v~~l  204 (350)
                      ... ............. .  ...+.|..+.|+|+|  ++... +|.|++   -....|. .+   ..+.. -...+.++
T Consensus       427 ~~~gql~~~~vd~ge~~-~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVA-S--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhh-h--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence            110 0000000011110 1  234679999999999  33333 577777   4434443 11   11222 22346889


Q ss_pred             EEEccCCeEEeee
Q 045370          205 VVIRQSSLLSEVS  217 (350)
Q Consensus       205 ~~~~~~~~l~~~~  217 (350)
                      .|.+++.+++...
T Consensus       503 ~W~~~~~L~V~~~  515 (591)
T PRK13616        503 DWRTGDSLVVGRS  515 (591)
T ss_pred             eEecCCEEEEEec
Confidence            9999999765443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.57  E-value=0.25  Score=43.87  Aligned_cols=135  Identities=12%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             eCCCcEE-EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCC--------cEEEEEccCCeEEEEeCCcccccccc
Q 045370           74 SGGTTFF-VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE--------QLLFAGSIDGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        74 ~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~  144 (350)
                      ..+.+++ ..|+.-..+.-.|+.-|+++........+ -+.|.|+.        ..|+ |-.+..|.-.|.+...     
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g-----  548 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG-----  548 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccC-----
Confidence            3344443 45666677888899999999988877766 78888843        2344 4446666666666321     


Q ss_pred             ccccccceeee----ccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          145 IVGEDQHSVLK----GHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       145 ~~~~~~~~~~~----~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                          ..+....    .......+..-..+| ++.++..|-|++||--.-+.-..+++....|..+..+.+|+++++++..
T Consensus       549 ----NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         549 ----NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ----CceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence                1111110    011223334444556 9999999999999965444334455666789999999999998877765

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.55  E-value=0.96  Score=36.17  Aligned_cols=93  Identities=18%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEe--CCCCce-----EEEEec-----CCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWD--LGSGIL-----IQTQVY-----PQAVTAIAFHPGEQLLFAGSIDGRIFVSP  134 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd--~~~~~~-----~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  134 (350)
                      -+.++|......+.++-+.+-+|.-||  ..+|..     +..+..     +.....++.+.+|++.+++-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            356778766667777888888898888  445432     222221     11234566677888888888889999999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCC
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS  169 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  169 (350)
                      ..+++.          +..+.-....|++++|-..
T Consensus       240 p~tGK~----------L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  240 PTTGKI----------LLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCcE----------EEEEEcCCCceEEEEecCC
Confidence            986543          3355556788999999754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.11  Score=50.43  Aligned_cols=100  Identities=11%  Similarity=-0.004  Sum_probs=69.0

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ..-..++.|+|.-....+.+..|+.|++..+..-. ....+......++++|+|.|..+++|...|++..|...-...  
T Consensus       155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--  232 (1405)
T KOG3630|consen  155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--  232 (1405)
T ss_pred             ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--
Confidence            34456777877555557788899999998876433 333356778899999999999999999999999887652110  


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH  170 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (350)
                       ......+..    ....|.++.|-...
T Consensus       233 -~~ip~Pp~~----e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  233 -SEIPEPPVE----ENYRVLSVTWLSTQ  255 (1405)
T ss_pred             -ecccCCCcC----CCcceeEEEEecce
Confidence             001111111    14689999998776

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.37  E-value=1.1  Score=35.54  Aligned_cols=149  Identities=13%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA   87 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   87 (350)
                      ..|+.+...+.|.+|++...                          ..........-+.|..+.++. .|++++|--.+.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~--------------------------~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~   81 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQE--------------------------ECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKN   81 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccC--------------------------CCceeEEEcchhheeEEEecc-ccceEEEEEeec
Confidence            45555466688999998721                          222222233447788888765 467777743221


Q ss_pred             ------cEEEE---eCC--CCce-----------------------EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEE
Q 045370           88 ------TCKVW---DLG--SGIL-----------------------IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVS  133 (350)
Q Consensus        88 ------~v~vw---d~~--~~~~-----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  133 (350)
                            .+++|   +..  ....                       +..++...++.+++-+|-...|++|+ ++.+.+|
T Consensus        82 ~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf  160 (215)
T PF14761_consen   82 KRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLF  160 (215)
T ss_pred             CCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEE
Confidence                  45553   222  1111                       11133456788899998655666665 5788999


Q ss_pred             eCCccccccc--cccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEEC
Q 045370          134 PLKFLLLEDH--FIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDV  185 (350)
Q Consensus       134 d~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~  185 (350)
                      .+........  ....-+.........-.+..+++..+.+|..+ +-.++++.+
T Consensus       161 ~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  161 TLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEec-CCEEEEEEE
Confidence            8875543110  00010000011111223556666666555555 445666544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.26  E-value=2.1  Score=38.34  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             EEEeeCCCcEEEE-EeCCC----cEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccC-----------CeEEE
Q 045370           70 LLTISGGTTFFVS-SSLDA----TCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSID-----------GRIFV  132 (350)
Q Consensus        70 ~~~~~~~~~~l~s-~~~d~----~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i  132 (350)
                      ..+ ++++++++- -+..|    .|+++|+.+|+.+... ... ....+.|.+++..|+-...+           ..|+.
T Consensus       129 ~~~-Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  129 FSV-SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEE-TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeE-CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            344 456666554 34445    4999999999776642 222 22349999998876655432           23777


Q ss_pred             EeCCccccccccccccccceeeeccCC--ceEEEEecCCe---EEEEeC--C-CcEEEEECCCc
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH---LISASE--D-KTVCLWDVTRR  188 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~---l~s~~~--d-g~v~iwd~~~~  188 (350)
                      |.+.+.....        ...+.....  ....+..++++   ++....  + ..+++.|+..+
T Consensus       207 ~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  207 HKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            7777543221        112223222  25678889888   333332  2 45888888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.21  E-value=0.74  Score=41.87  Aligned_cols=148  Identities=13%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             ccCCceEEEEeeCCCcEEEEEe--CCCcEEEEeCCCCceEEEEecCCceeEEEEcCC----CcEEEEEccCCeEEEEeCC
Q 045370           63 HKSSVTGLLTISGGTTFFVSSS--LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG----EQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~  136 (350)
                      --.++.+++|. ++...++|.-  .+|.+++-|-.   .   ++.-..|..+.|.|-    ...+++.-....|.+|.+.
T Consensus        18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---V---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hhccccceEec-CCCEEEEEeeeeeCCccccCCcc---E---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            34678899994 3444455543  34555444422   2   333345888999984    3355555668899999987


Q ss_pred             ccccccccccccccceee-eccCCceEEEEecCCe--EEEEeCCCcEEEEECCC--ceEEEEeccCCCceeEEEEEccCC
Q 045370          137 FLLLEDHFIVGEDQHSVL-KGHNGSITALAFSASH--LISASEDKTVCLWDVTR--RVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      ............ +...+ ....--.....|+|..  |++-.....-.+++++.  .+....+. ..+-|.|.+|.+||+
T Consensus        91 ~s~~e~~K~l~s-QtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   91 PSTTERNKLLMS-QTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ  168 (671)
T ss_pred             cCccccccceee-eeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence            433222111000 00000 0011112346799988  33333333334555543  33444454 468899999999998


Q ss_pred             eEEeeecC
Q 045370          212 LLSEVSNC  219 (350)
Q Consensus       212 ~l~~~~~~  219 (350)
                      .|+++-+.
T Consensus       169 RLVVAvGS  176 (671)
T PF15390_consen  169 RLVVAVGS  176 (671)
T ss_pred             EEEEEeCC
Confidence            77766554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.20  E-value=0.16  Score=40.82  Aligned_cols=61  Identities=11%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEE---------------ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQ---------------VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      ..++++++-+.+|.+++||+.+++.+...               .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            35678999999999999999988765442               1335678888887777666654 5778888766

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.04  E-value=1  Score=43.09  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCc-cccccccccccc--cce--------eeeccCCceEEEEecCCe-----E
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKF-LLLEDHFIVGED--QHS--------VLKGHNGSITALAFSASH-----L  171 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~--~~~--------~~~~~~~~i~~~~~~~~~-----l  171 (350)
                      .|..|.++|+|.+++..+..|...+ .+.. +.....+.....  ..+        ....+...|..+.|+|.+     |
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            5889999999999998887664443 3321 110000000000  000        112345689999999974     8


Q ss_pred             EEEeCCCcEEEEECCC
Q 045370          172 ISASEDKTVCLWDVTR  187 (350)
Q Consensus       172 ~s~~~dg~v~iwd~~~  187 (350)
                      +.-..|+++|+||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.98  E-value=1.6  Score=40.65  Aligned_cols=63  Identities=13%  Similarity=0.235  Sum_probs=35.8

Q ss_pred             CCcEEEEEeCC-----CcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCccc
Q 045370           76 GTTFFVSSSLD-----ATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~  139 (350)
                      ++.+++.||.+     ..+..||..+++....  +..+..-.+++. -++..++.|+.+      ..+..||..+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56777788765     3477888887765433  222222222222 256666666632      457888887544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.90  E-value=1.6  Score=40.83  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=38.9

Q ss_pred             CCcEEEEEeCC------CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCC-----eEEEEeCCccc
Q 045370           76 GTTFFVSSSLD------ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDG-----RIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  139 (350)
                      ++.++++||.|      .++..||..+++....-+  ....-..++. -+|...++|+.||     .+..||..+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCc
Confidence            45788899998      357888988887544322  1111112222 2678888898886     46667766543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.82  E-value=0.2  Score=40.38  Aligned_cols=77  Identities=13%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee-------ccCCceEEEEecCCe--EEEEe
Q 045370          105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK-------GHNGSITALAFSASH--LISAS  175 (350)
Q Consensus       105 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--l~s~~  175 (350)
                      ...++..  +..++.++++.+.+|.+++||+.+.+.......   ....+.       .....|..+.++.+|  +++- 
T Consensus        11 Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S---i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-   84 (219)
T PF07569_consen   11 LGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS---IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-   84 (219)
T ss_pred             cCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc---HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-
Confidence            3444444  445788999999999999999998765432100   000111       455678888888888  4444 


Q ss_pred             CCCcEEEEECCC
Q 045370          176 EDKTVCLWDVTR  187 (350)
Q Consensus       176 ~dg~v~iwd~~~  187 (350)
                      .+|..+.||..-
T Consensus        85 sng~~y~y~~~L   96 (219)
T PF07569_consen   85 SNGDSYSYSPDL   96 (219)
T ss_pred             eCCCEEEecccc
Confidence            467788887653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.70  E-value=0.74  Score=45.12  Aligned_cols=125  Identities=14%  Similarity=0.017  Sum_probs=80.0

Q ss_pred             EeCCCcEEEEeCCCCceEE--------E----EecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccc
Q 045370           83 SSLDATCKVWDLGSGILIQ--------T----QVYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~--------~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      .+.+-.|..||+++-....        .    +.......++.|+|.-. ..++...|+.|.+..+......        
T Consensus       120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~--------  191 (1405)
T KOG3630|consen  120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN--------  191 (1405)
T ss_pred             ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh--------
Confidence            3344478889987532211        1    12234567888988543 4566677888888776532211        


Q ss_pred             cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEeeec
Q 045370          150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                       +.. -.-....+|++|+|.|  ++.|-..|++.-|-.. ++....+..    ....|.+|+|.....++++-+.
T Consensus       192 -v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n  263 (1405)
T KOG3630|consen  192 -VTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN  263 (1405)
T ss_pred             -hcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence             111 1234678999999999  9999999999988654 343333321    2357999999999888885443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.61  E-value=0.019  Score=54.01  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=90.6

Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC--CceEEEE------ecCCceeEEEEcC---CCcEEEEEccCC
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS--GILIQTQ------VYPQAVTAIAFHP---GEQLLFAGSIDG  128 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~------~~~~~v~~~~~~~---~~~~l~~~~~dg  128 (350)
                      .++..+.|-.+.|-+.+...+.  -.-|.+.|||+.-  |+....+      +....+.-+.|+|   +..++..+..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            3566777888877654443333  3446788999763  4332221      2334566777776   566777787888


Q ss_pred             eEEEEeCCccccccccccccccceeeeccCCceEEEE-----------ecCCe--EEEEeCCCcEEEEECC-----CceE
Q 045370          129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALA-----------FSASH--LISASEDKTVCLWDVT-----RRVS  190 (350)
Q Consensus       129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~--l~s~~~dg~v~iwd~~-----~~~~  190 (350)
                      .+++.....-..           ..+.+|..+++.++           .+|||  +++++.||.+++|.+.     ..++
T Consensus       206 ~i~lL~~~ra~~-----------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rc  274 (1283)
T KOG1916|consen  206 EIRLLNINRALR-----------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRC  274 (1283)
T ss_pred             ceeEeeechHHH-----------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhh
Confidence            888877653221           13344665555544           57888  8888888887777643     3345


Q ss_pred             EEEeccCC-CceeEEEEEccC---------CeEEeeecCccccccc
Q 045370          191 IRRFNHKK-GVVTNLVVIRQS---------SLLSEVSNCQRKLKKD  226 (350)
Q Consensus       191 ~~~~~~~~-~~v~~l~~~~~~---------~~l~~~~~~~~~~~~~  226 (350)
                      ++..+.|. ++-.|.-++.+.         .++++++.-++-...|
T Consensus       275 lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w  320 (1283)
T KOG1916|consen  275 LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFW  320 (1283)
T ss_pred             hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEe
Confidence            55666676 343333343321         3455555555555555

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.54  E-value=0.0057  Score=53.40  Aligned_cols=142  Identities=11%  Similarity=0.085  Sum_probs=98.4

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCccccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~  141 (350)
                      +-.......|-+.+.+ ++.++.+..|..||-. ++.......++....++|+.++..+++ +-..+.+.+||+.+....
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            3334444567675655 7777788899999944 566656667778888999998876554 556799999999853211


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      .        +..--.|....  +.|++.+  ++.+...|.+.|++..+.+.+.....|...++++++.+.+..+...
T Consensus       111 q--------LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  111 Q--------LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             H--------HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            1        00000122222  6788877  8888889999999998877666665588889999999988766633

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.48  E-value=3.4  Score=36.86  Aligned_cols=140  Identities=9%  Similarity=0.080  Sum_probs=79.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCc-----eEEEEecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      +...++.|+..|.++||+...+.     .+.......+|..+..-+     ....|++ =.-..+.+|.+......... 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~-  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH-  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc-
Confidence            45789999999999999986543     333455678888887643     2234444 34677888887322111000 


Q ss_pred             cccccceeeeccC--CceEEEEecC----C---eEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          146 VGEDQHSVLKGHN--GSITALAFSA----S---HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       146 ~~~~~~~~~~~~~--~~i~~~~~~~----~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      ...-.+.....|.  .....+++-|    .   .+.+=+.||.+.+|+-+.-.....+.. .--...++|.+....++++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence            0001111222232  2233333322    1   288889999999999887655544443 2222345677766655555


Q ss_pred             ec
Q 045370          217 SN  218 (350)
Q Consensus       217 ~~  218 (350)
                      +.
T Consensus       193 ss  194 (418)
T PF14727_consen  193 SS  194 (418)
T ss_pred             cC
Confidence            44

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.38  E-value=1.6  Score=39.87  Aligned_cols=117  Identities=15%  Similarity=0.207  Sum_probs=71.2

Q ss_pred             ccccCCceEEEEeeCCC---cEEEEEeCCCcEEEEeCC-----CCceEEE----EecCC--ceeEEEEcCCCcEEEEEcc
Q 045370           61 LEHKSSVTGLLTISGGT---TFFVSSSLDATCKVWDLG-----SGILIQT----QVYPQ--AVTAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~---~~l~s~~~d~~v~vwd~~-----~~~~~~~----~~~~~--~v~~~~~~~~~~~l~~~~~  126 (350)
                      .+.-..|.++.|.|...   ..+++.-....|.||.+.     .++.+..    +..+-  -...+.|||....|++-+.
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            45557789999987532   235555667899999976     2333332    11122  2456889999998887766


Q ss_pred             CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEE-EeCCCcEEEEECC
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS-ASEDKTVCLWDVT  186 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s-~~~dg~v~iwd~~  186 (350)
                      ...-.+++++..         ..++..--...+-|.|.+|.+||  |+. .+..=.-+|||-.
T Consensus       133 ~dvSV~~sV~~d---------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCD---------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeC---------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            555456666532         22222222456789999999999  332 2233356788753

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.32  E-value=0.065  Score=50.62  Aligned_cols=73  Identities=10%  Similarity=0.051  Sum_probs=40.3

Q ss_pred             EcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC-CceEEEEecCC----------e-EEEEe-CCCcE
Q 045370          114 FHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN-GSITALAFSAS----------H-LISAS-EDKTV  180 (350)
Q Consensus       114 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~----------~-l~s~~-~dg~v  180 (350)
                      ++|||+.++.++.||.++.|.+.-.....     ..+....+.|. .+-.|..++..          . +++++ .+..+
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~-----~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~  317 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIV-----HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREE  317 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeecccc-----HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcce
Confidence            67888888888888888777765322111     11222334444 22233333321          1 33333 45678


Q ss_pred             EEEECCCceEE
Q 045370          181 CLWDVTRRVSI  191 (350)
Q Consensus       181 ~iwd~~~~~~~  191 (350)
                      ++|.....+++
T Consensus       318 k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  318 KFWAEAPWQCL  328 (1283)
T ss_pred             eEeeccchhhh
Confidence            99988777766

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.14  E-value=3.8  Score=36.11  Aligned_cols=149  Identities=13%  Similarity=0.025  Sum_probs=73.5

Q ss_pred             CCceEEEEeeCCCcEEEEEe-----------CCC-cEEEEeCCC--CceE--EEEe-cCCceeEEEEcCCCcEEEEEccC
Q 045370           65 SSVTGLLTISGGTTFFVSSS-----------LDA-TCKVWDLGS--GILI--QTQV-YPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~-----------~d~-~v~vwd~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                      .....++|.+ ++.++++-.           ..+ .|.+++-.+  |..-  ..+. .-.....+++.+++  +++++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            4456677755 555555432           223 676666432  3321  2222 23346889999888  4445544


Q ss_pred             CeEEEEeCCccccccccccccccceeeec----cCCceEEEEecCCe-EEE-EeC-------------------CCcEEE
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKG----HNGSITALAFSASH-LIS-ASE-------------------DKTVCL  182 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~-l~s-~~~-------------------dg~v~i  182 (350)
                      ...++.|.........  ........+..    +......++|.|++ |.. -+.                   .|.|.-
T Consensus        91 ~i~~~~d~~gdg~ad~--~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        91 DILFLRDKDGDDKADG--EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             eEEEEeCCCCCCCCCC--ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            4333445432111100  00000011211    23457789999998 333 221                   134555


Q ss_pred             EECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          183 WDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       183 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +|..+++. ..+.........++|+|+|+++++-..+
T Consensus       169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            56655443 2232222345789999999988754433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.11  E-value=0.27  Score=27.64  Aligned_cols=33  Identities=9%  Similarity=-0.002  Sum_probs=27.6

Q ss_pred             CCceEEEEeeCCC--cEEEEEeCCCcEEEEeCCCC
Q 045370           65 SSVTGLLTISGGT--TFFVSSSLDATCKVWDLGSG   97 (350)
Q Consensus        65 ~~v~~~~~~~~~~--~~l~s~~~d~~v~vwd~~~~   97 (350)
                      +.|.++.|+|.++  .+|+.+-.-+.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4678999987666  78998888999999999953

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.07  E-value=2.9  Score=34.58  Aligned_cols=103  Identities=15%  Similarity=-0.013  Sum_probs=57.4

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEe-CCCCceEEE-E--e-cCCceeEEEEcCCCcEEEEEc---cCCeEEEEeCCc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWD-LGSGILIQT-Q--V-YPQAVTAIAFHPGEQLLFAGS---IDGRIFVSPLKF  137 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~-~--~-~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~  137 (350)
                      .+..-.|.+. +...+....+...+++. ..++..... .  . ....|..+.++|||..++...   .++.|.+--+..
T Consensus        67 ~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen   67 SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             ccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            5555667654 55444545555566663 333333222 2  1 122899999999999887665   357777765542


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH  170 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (350)
                      ..-.... .-..+..........++.+.|.++.
T Consensus       146 ~~~g~~~-~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  146 DGDGVPR-RLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             CCCCCcc-eeccceEecccccCcceeeeecCCC
Confidence            2211000 0111222233345689999999998

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.03  E-value=2.3  Score=37.65  Aligned_cols=127  Identities=9%  Similarity=0.035  Sum_probs=77.5

Q ss_pred             CCCcEEEEeCCCC--ceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           85 LDATCKVWDLGSG--ILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        85 ~d~~v~vwd~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ..|.+.=|.+...  .+..+  ....++|.++.|++|.+.+++--.+..|.+++........      .....-+.....
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l------~~~~~ck~k~~~  114 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL------EYTQECKTKNAN  114 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh------HHHHHhccCcce
Confidence            4455666665432  12222  3456799999999999999999999999999874221110      011122233456


Q ss_pred             eEEEEecCCe-EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          161 ITALAFSASH-LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       161 i~~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      |....|+.+. +|--...| +-+|-... .+.++..+.|...|.-..|.++.+.+..+++
T Consensus       115 IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  115 ILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             eEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            8889998887 66555444 55664432 2234444556667777778888775554444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.85  E-value=2.9  Score=39.19  Aligned_cols=103  Identities=12%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEec--CCe--EEEEeCCCcEEEEE
Q 045370          109 VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASH--LISASEDKTVCLWD  184 (350)
Q Consensus       109 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~--l~s~~~dg~v~iwd  184 (350)
                      +.-+.-+.-++..++-+....+.|||.+.+..+..        ..+ ...+.|.++.|.  |++  +++.+..+.|.+|-
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~--------~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE--------ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe--------eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            44444444455555555557899999986543221        122 446789999986  555  77778888898885


Q ss_pred             CC---------CceEEEEec--cCC-CceeEEEEEccCCeEEeeecCc
Q 045370          185 VT---------RRVSIRRFN--HKK-GVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       185 ~~---------~~~~~~~~~--~~~-~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      -.         +...++.+.  .+. .+|.+..|.++|.+++++++.-
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNql  150 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQL  150 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEE
Confidence            31         123444442  233 5899999999999998666543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=93.67  E-value=2.7  Score=38.59  Aligned_cols=59  Identities=12%  Similarity=0.032  Sum_probs=32.8

Q ss_pred             CCcEEEEEeCCC---cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           76 GTTFFVSSSLDA---TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        76 ~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      ++.+.+.||.++   .+..||..+++....-.  .+..-.+++ .-++...+.|   |.+.+||..+.
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~  425 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSN  425 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCCC
Confidence            567777877654   47789988776544321  111111222 2245555555   35677887654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.63  E-value=2  Score=31.18  Aligned_cols=113  Identities=15%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC----CC
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG----GT   77 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~   77 (350)
                      .|......|+.++.-|.|.|++..........                   ....+ .+..-+..|++++.-+-    +.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------~~~~i-~~LNin~~italaaG~l~~~~~~   64 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------QDSDI-SFLNINQEITALAAGRLKPDDGR   64 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCcccccccc-------------------ccCce-eEEECCCceEEEEEEecCCCCCc
Confidence            35666678999999999999987621100000                   01111 22334567777765442    34


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC----CCcEEEEEccCCeEEEEeCC
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP----GEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~  136 (350)
                      ..|+.|+ ..++..||+..+.-+.....++.++++.+-.    ...++++| .+..|.-||..
T Consensus        65 D~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~  125 (136)
T PF14781_consen   65 DCLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE  125 (136)
T ss_pred             CEEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence            6677776 5679999999887776666778888888743    23344444 46777777765

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.59  E-value=5  Score=35.66  Aligned_cols=112  Identities=10%  Similarity=0.070  Sum_probs=64.3

Q ss_pred             EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee--ccCCceEEEEecCCe-EEEEeCCCc
Q 045370          103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK--GHNGSITALAFSASH-LISASEDKT  179 (350)
Q Consensus       103 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-l~s~~~dg~  179 (350)
                      ......+..+.+.+++..++++ .+|.+.. ....+.....     .......  .....++.+.+.+++ ++.++.+|.
T Consensus       277 ~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~-----~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~  349 (398)
T PLN00033        277 RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED-----FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGI  349 (398)
T ss_pred             CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc-----cceeecccCCCCcceEEEEEcCCCcEEEEECCCc
Confidence            3445678899999888887766 4565543 2222110000     0011111  122358889999888 778888887


Q ss_pred             EEEEECCCceEEEEe---ccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          180 VCLWDVTRRVSIRRF---NHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       180 v~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      +.... ..++.-...   ..-...++.+.|.++++.++ .+.++.++
T Consensus       350 v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il  394 (398)
T PLN00033        350 LLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLL  394 (398)
T ss_pred             EEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEE
Confidence            76664 333332222   22345788999988888877 44444444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.56  E-value=4.1  Score=34.59  Aligned_cols=151  Identities=14%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce-EEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC-cccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL-IQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK-FLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~  140 (350)
                      -...+..+.. .+++.+++++.......-||...... .+.......|..+.|.|++...+++ ..|.|+.=+.. ....
T Consensus       143 ~~gs~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITR-SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEE-CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            3456666655 45778777776666667788764332 2333456789999999997776655 78888877621 1110


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceE---EEEeccCCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVS---IRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      -      .+.........-.+..++|.++. +.+++..|.+.. ....|+.   ......-.+.+..+.|.+..+-++ .
T Consensus       221 w------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l  292 (302)
T PF14870_consen  221 W------SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L  292 (302)
T ss_dssp             E---------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred             c------ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence            0      00001111223358899999887 666666776543 4444433   322233355688999987777666 4


Q ss_pred             ecCcccc
Q 045370          217 SNCQRKL  223 (350)
Q Consensus       217 ~~~~~~~  223 (350)
                      +.++.++
T Consensus       293 G~~G~ll  299 (302)
T PF14870_consen  293 GQDGVLL  299 (302)
T ss_dssp             -STTEEE
T ss_pred             CCCcEEE
Confidence            4444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.55  E-value=0.31  Score=27.42  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=25.3

Q ss_pred             CceeEEEEcCCC---cEEEEEccCCeEEEEeCCc
Q 045370          107 QAVTAIAFHPGE---QLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus       107 ~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~  137 (350)
                      +.++++.|+|..   .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4777777789999999994

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.54  E-value=4.2  Score=34.56  Aligned_cols=143  Identities=10%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      -++||+++++++.-....-||--                           ...-..........|..+.|.+ ++.+.+ 
T Consensus       152 r~~dG~~vavs~~G~~~~s~~~G---------------------------~~~w~~~~r~~~~riq~~gf~~-~~~lw~-  202 (302)
T PF14870_consen  152 RSSDGRYVAVSSRGNFYSSWDPG---------------------------QTTWQPHNRNSSRRIQSMGFSP-DGNLWM-  202 (302)
T ss_dssp             E-TTS-EEEEETTSSEEEEE-TT----------------------------SS-EEEE--SSS-EEEEEE-T-TS-EEE-
T ss_pred             ECCCCcEEEEECcccEEEEecCC---------------------------CccceEEccCccceehhceecC-CCCEEE-
Confidence            46888888877665555566644                           1222223334567899999976 455444 


Q ss_pred             EeCCCcEEEEeC-CCCceEEE--Ee---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           83 SSLDATCKVWDL-GSGILIQT--QV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        83 ~~~d~~v~vwd~-~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ....|.|++=+. ........  .+   ..-.+..++|.+++...++|+ .|.+.+ ....++.-.       .......
T Consensus       203 ~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~-------~~~~~~~  273 (302)
T PF14870_consen  203 LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQ-------KDRVGEN  273 (302)
T ss_dssp             EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-E-------E-GGGTT
T ss_pred             EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccce-------ECccccC
Confidence            448888888772 22221111  11   122478999998877767665 554433 222222111       0001122


Q ss_pred             cCCceEEEEecCC-eEEEEeCCCcEEEE
Q 045370          157 HNGSITALAFSAS-HLISASEDKTVCLW  183 (350)
Q Consensus       157 ~~~~i~~~~~~~~-~l~s~~~dg~v~iw  183 (350)
                      -....+.+.|.+. .-+.-+.+|.|--|
T Consensus       274 ~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  274 VPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            3456777887544 43344557766544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.45  E-value=5.1  Score=35.30  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=31.1

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-----c--eEEE-Eec-----CCceeEEEEcCCCcEEEEEc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-----I--LIQT-QVY-----PQAVTAIAFHPGEQLLFAGS  125 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-----~--~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~  125 (350)
                      -.....+++.+ ++ +++ +......++.|....     +  .+.. +..     ......++|.|+|.+.++.+
T Consensus        71 l~~p~Gi~~~~-~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        71 LSMVTGLAVAV-GG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCCccceeEec-CC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            34557777755 55 444 444443334454321     1  1211 222     23477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.35  E-value=6.4  Score=37.96  Aligned_cols=89  Identities=15%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccc-cccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--C
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRL-LKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--T   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~   77 (350)
                      |.+||+|.+||..|..| |.|-.+... ... ...........++.+..     ... .....+...|..+.|+|..  +
T Consensus        90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v-----~~~-~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPV-----DER-FFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             EEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEe-----chh-hccCCCCceEEEEEEcCCCCCC
Confidence            45789999999888765 555544310 000 00000000111111111     111 1123456788999998753  5


Q ss_pred             cEEEEEeCCCcEEEEeCCCC
Q 045370           78 TFFVSSSLDATCKVWDLGSG   97 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~   97 (350)
                      ..|+.=..|+++++||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            67778888999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.33  E-value=0.0088  Score=52.28  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|-|.+.-|+.++.+..+..||-.                            +.. ..-...++....++|.......++
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~a----------------------------gq~-~le~n~tg~aldm~wDkegdvlav   91 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKA----------------------------GQV-ILELNPTGKALDMAWDKEGDVLAV   91 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhh----------------------------cce-ecccCCchhHhhhhhccccchhhh
Confidence            355666557777777777777754                            111 111223455566777664445566


Q ss_pred             EEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      .+-..+.+.+||+.+...... ......-.-+.|++....++.+...|.+.+++.....          .....-.|...
T Consensus        92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR----------~iiv~Gkh~RR  161 (615)
T KOG2247|consen   92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----------RIIVMGKHQRR  161 (615)
T ss_pred             hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh----------hhhhhcccccc
Confidence            677889999999986532221 2211122227789988899999889999999877422          22233348899


Q ss_pred             eEEEEecCCe-EEEEeCCCcEEEEE
Q 045370          161 ITALAFSASH-LISASEDKTVCLWD  184 (350)
Q Consensus       161 i~~~~~~~~~-l~s~~~dg~v~iwd  184 (350)
                      ++++++.+.+ .+.++.|..+.+-.
T Consensus       162 gtq~av~lEd~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  162 GTQIAVTLEDYVILCDCDNTLSVTT  186 (615)
T ss_pred             eeEEEecccceeeecCcHHHHHHhh
Confidence            9999999988 77777776555443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.86  E-value=1.5  Score=38.98  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEE---EeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeC-
Q 045370            1 MVFSDDGFLLISGSDDGMICV---WSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISG-   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-   75 (350)
                      ++.+|+|.+||.+..+..+.+   |+......            ....+..      .....+.. ....|+++.+.|- 
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~------------~~~~~~~------~~~g~l~~~~~e~ITsi~clpl~   68 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGE------------NENTYSI------SWSGPLDDEPGECITSILCLPLS   68 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCC------------CCCeEEE------EeeeeccCCCCCEEEEEEEEEee
Confidence            467899999999988776665   54321000            0000000      00001111 1156777766653 


Q ss_pred             ---------CCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcC
Q 045370           76 ---------GTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHP  116 (350)
Q Consensus        76 ---------~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~  116 (350)
                               +...++.|..+|.|++|... |..+.. .-|..+|..+....
T Consensus        69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   69 SQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cccccCCCCCcEEEEEEecccEEEEEecc-chHHHHHhcCccceEEEEecc
Confidence                     34678999999999999974 554444 45778888887754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.74  E-value=2.3  Score=39.46  Aligned_cols=110  Identities=16%  Similarity=0.093  Sum_probs=67.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCc--eeE----------EEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQA--VTA----------IAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--v~~----------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      ..++.++.++.|.-.|..+|+.+..+.....  +..          +++  .+..++.++.|+.+.-+|..+++......
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            3566777788999999999998887653221  111          122  24567788889999999999887654322


Q ss_pred             cccccceeeeccCCceE-EEEecCCeEEEEeC------CCcEEEEECCCceEEEEec
Q 045370          146 VGEDQHSVLKGHNGSIT-ALAFSASHLISASE------DKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~-~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~  195 (350)
                      ...     .. ....++ ......+.++.+..      +|.|+-+|.++|+.+..+.
T Consensus       148 ~~~-----~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGD-----YK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccc-----cc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            110     00 000111 11122223555432      6899999999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.69  E-value=8.5  Score=35.80  Aligned_cols=42  Identities=10%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCCce-eEEEEEccCCe
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVV-TNLVVIRQSSL  212 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~~  212 (350)
                      ++.+..||.++.+|.++|+.+..+....+.. .=+.|.-+|+.
T Consensus       475 vf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       475 VFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             EEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            6677789999999999999999887432211 12334456653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02790 Kelch-like protein; Provisional

Probab=92.63  E-value=8.2  Score=35.47  Aligned_cols=62  Identities=11%  Similarity=0.137  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCC--CcEEEEeCCCCceEEEEecCCce--eEEEEcCCCcEEEEEccCC---eEEEEeCCcc
Q 045370           76 GTTFFVSSSLD--ATCKVWDLGSGILIQTQVYPQAV--TAIAFHPGEQLLFAGSIDG---RIFVSPLKFL  138 (350)
Q Consensus        76 ~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~  138 (350)
                      ++.+.+.||.+  .++..||..+++....-+.+.+.  .+++ .-+|...+.|+.++   .+..||.++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence            56777788764  35788888776544332222111  1222 22677777777553   4667777654

>PHA03098 kelch-like protein; Provisional

Probab=92.58  E-value=4.4  Score=37.77  Aligned_cols=63  Identities=10%  Similarity=0.113  Sum_probs=34.6

Q ss_pred             CCcEEEEEeCC------CcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccC--------CeEEEEeCCccc
Q 045370           76 GTTFFVSSSLD------ATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSID--------GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~  139 (350)
                      ++.+++.||.+      ..+..||+.+++.......+  ....+++. .++..++.|+.+        ..+.+||..+..
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            55677777742      35788998876654332211  11122222 255666666542        237888887644

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.25  E-value=4.3  Score=40.81  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=51.0

Q ss_pred             CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc-------c-------cccceeee-ccCCceEEEEecCCe
Q 045370          106 PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV-------G-------EDQHSVLK-GHNGSITALAFSASH  170 (350)
Q Consensus       106 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~-------~~~~~~~~-~~~~~i~~~~~~~~~  170 (350)
                      .-.|.|+....+|+.|++|- ||  .+|.+........+..       +       ...+..+. .+..+|..+......
T Consensus       178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            45688998777887777765 55  4555433221111100       0       00022333 567899999998776


Q ss_pred             --EEEEeCCCcEEEEECCC
Q 045370          171 --LISASEDKTVCLWDVTR  187 (350)
Q Consensus       171 --l~s~~~dg~v~iwd~~~  187 (350)
                        +.+-++.|+|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence              88999999999999976

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.07  E-value=5.1  Score=31.82  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             cEEEEEeCCCcEEEEeCCC--CceEEEEecCCceeEEEEcCCCcEEEEEccC---C---eEEEE-eCCccccccc----c
Q 045370           78 TFFVSSSLDATCKVWDLGS--GILIQTQVYPQAVTAIAFHPGEQLLFAGSID---G---RIFVS-PLKFLLLEDH----F  144 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~~~~~~~----~  144 (350)
                      +.|..+...+.|.+|++..  ......+..-+.|..+.++..|+++++--.+   .   .+++| +.+.......    .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            4444445667899999883  4556667778999999999999999997543   2   45554 2221100000    0


Q ss_pred             ccc-----------cccceeee-ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce
Q 045370          145 IVG-----------EDQHSVLK-GHNGSITALAFSASH--LISASEDKTVCLWDVTRRV  189 (350)
Q Consensus       145 ~~~-----------~~~~~~~~-~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~  189 (350)
                      ..+           ..++..+. .-..++.+++..|-.  |+.|+. +.+.+|.+....
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~  166 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQT  166 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEE
Confidence            000           00011111 113467788887754  777774 478899876443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.66  E-value=1.2  Score=24.62  Aligned_cols=38  Identities=24%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEE
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAF  114 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~  114 (350)
                      ..++++...+++|.++|..++..+..+........++|
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            34455566688999999999988888776555566655

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.47  E-value=5  Score=39.10  Aligned_cols=120  Identities=16%  Similarity=0.209  Sum_probs=75.0

Q ss_pred             cEEEEeCCCCceEEEEecC--C---ceeEEEEcCC-CcEEEEEcc----------CCeEEEEeCCccccccccccccccc
Q 045370           88 TCKVWDLGSGILIQTQVYP--Q---AVTAIAFHPG-EQLLFAGSI----------DGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      .++++|-++.+.+......  .   .+.++.|..| +.++++|+.          .|.|.+|.+...          ..+
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------~~L  820 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------NSL  820 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------Cce
Confidence            3677787777766664422  2   3555568877 677787753          467777766531          111


Q ss_pred             eeeec--cCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          152 SVLKG--HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       152 ~~~~~--~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .....  -.+.+.++..-...++ ++-+..|++|+..+.+.++.-..+..++..+...-.|..+++|.-
T Consensus       821 ~~v~e~~v~Gav~aL~~fngkll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl  888 (1096)
T KOG1897|consen  821 ELVAETVVKGAVYALVEFNGKLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL  888 (1096)
T ss_pred             eeeeeeeeccceeehhhhCCeEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence            11111  2345555544433333 445678999999998777766667788888888888888876654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.25  E-value=2.1  Score=40.60  Aligned_cols=123  Identities=15%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-CCCcEEEEEe
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-GGTTFFVSSS   84 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~   84 (350)
                      +...|+.|.+||.|.+|.+++...............       ..+....+. ....-...+++++++. ....++|.++
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-------~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSs  184 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-------FSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSS  184 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-------cccccCCCC-eEeecCCceeEEEEEecCcceEEEEec
Confidence            346789999999999999875333222220000000       000001111 1222345889998862 2456777777


Q ss_pred             CCCcEEEEeCCCC--ceEE--EEecCCceeEEEEcCCC---c---EEEEEccCCeEEEEeCC
Q 045370           85 LDATCKVWDLGSG--ILIQ--TQVYPQAVTAIAFHPGE---Q---LLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        85 ~d~~v~vwd~~~~--~~~~--~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~~  136 (350)
                      ....|.||-+...  +...  ...+...|.+|+|-++.   .   .+++++-.|.+.+|++.
T Consensus       185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            7777877765432  2111  23466789999997743   2   77788889999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.85  E-value=8.9  Score=32.29  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-----cccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-----EHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~   75 (350)
                      |+|+|.+.+-++....+...+||........         .           ...++..+.     ......+.+.|+..
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g---------~-----------~~~L~vtiP~~~~~~~~~~PTGiVfN~~   87 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPL---------V-----------QDPLVVVIPAPPPLAAEGTPTGQVFNGS   87 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccC---------C-----------ccceEEEecCCCCCCCCCCccEEEEeCC
Confidence            5789999888888888999999986210000         0           011111111     11234555555421


Q ss_pred             C-----------CcEEEEEeCCCcEEEEeCCCCce-----EEEEec--CCc-eeEEEEcC--CCcEEEEEc-cCCeEEEE
Q 045370           76 G-----------TTFFVSSSLDATCKVWDLGSGIL-----IQTQVY--PQA-VTAIAFHP--GEQLLFAGS-IDGRIFVS  133 (350)
Q Consensus        76 ~-----------~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~--~~~-v~~~~~~~--~~~~l~~~~-~dg~i~i~  133 (350)
                      .           ...++.+++||+|.-|...-+..     ...+..  ... -..+++..  .+.+|+.+. .+++|.+|
T Consensus        88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF  167 (336)
T TIGR03118        88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF  167 (336)
T ss_pred             CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence            1           12367889999999999643322     111221  122 23444443  356666554 57899998


Q ss_pred             eCCcc
Q 045370          134 PLKFL  138 (350)
Q Consensus       134 d~~~~  138 (350)
                      |-...
T Consensus       168 d~~f~  172 (336)
T TIGR03118       168 KGSFR  172 (336)
T ss_pred             cCccc
Confidence            86543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.67  E-value=7.3  Score=37.89  Aligned_cols=118  Identities=7%  Similarity=0.018  Sum_probs=70.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCce---------eEEEEcC----------------CCcEEEEEccCCeEEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAV---------TAIAFHP----------------GEQLLFAGSIDGRIFV  132 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v---------~~~~~~~----------------~~~~l~~~~~dg~i~i  132 (350)
                      ..++.++.++.|.-.|..+|+.+..+.....+         +.+.+..                .+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            45777888899999999999988886543322         2233321                3447888989999999


Q ss_pred             EeCCccccccccccccccc--eeeeccCCceEEEE----ecCCeEEEEeC----------CCcEEEEECCCceEEEEec
Q 045370          133 SPLKFLLLEDHFIVGEDQH--SVLKGHNGSITALA----FSASHLISASE----------DKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~----~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~  195 (350)
                      .|.++++....+......-  ..+......-..+.    +..+.++.|+.          +|.|+-+|.++|+.+..+.
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            9999887654321111000  00000000000111    12222555542          6889999999999988874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.50  E-value=7.3  Score=35.17  Aligned_cols=121  Identities=17%  Similarity=0.036  Sum_probs=69.9

Q ss_pred             ccceeeeccccCCceEEEEeeCCC------cEEEEEeCCCcEEEEeCCC-CceEEEEecCCceeEEEEcC----CCcEEE
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGT------TFFVSSSLDATCKVWDLGS-GILIQTQVYPQAVTAIAFHP----GEQLLF  122 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~------~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~----~~~~l~  122 (350)
                      +..+..+..|.+.  -+.|.|...      ..-+.|-.+..|.-.|.+- |..+.........+--.|+.    ...+++
T Consensus       500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa  577 (776)
T COG5167         500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIA  577 (776)
T ss_pred             ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEE
Confidence            4555555555554  234443211      1234566677777777664 32222222222222222332    456999


Q ss_pred             EEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          123 AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       123 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                      +|+..|.|++||.-          .......+++-...|..+..+.+| .+-+.....+.+-|++
T Consensus       578 ~as~kGDirLyDRi----------g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         578 AASRKGDIRLYDRI----------GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             EecCCCceeeehhh----------cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            99999999999954          222223566777889999999999 3333335578888875

>PRK13684 Ycf48-like protein; Provisional

Probab=90.47  E-value=11  Score=32.71  Aligned_cols=110  Identities=6%  Similarity=0.009  Sum_probs=56.7

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      ...+.++.+.+ ++..++. +..|.+.+=..+.|..-....     ....+..+.+.+++..++ ++.+|.+.. ....+
T Consensus       214 ~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G  289 (334)
T PRK13684        214 SRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG  289 (334)
T ss_pred             cccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC
Confidence            45677777755 4555444 456766432344443322222     123478889998776555 445676653 22221


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWD  184 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd  184 (350)
                      ..-.       .......-....+.+.+..+. .+..+..|.|--|+
T Consensus       290 ~tW~-------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        290 KTWE-------KDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CCCe-------ECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence            1100       000001112356777766555 55566678877665

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.11  E-value=0.9  Score=42.44  Aligned_cols=28  Identities=32%  Similarity=0.567  Sum_probs=24.7

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQ  103 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~  103 (350)
                      +..++++.+.|+++|+||+.+++++...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            5578999999999999999999996664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.72  E-value=3.5  Score=31.84  Aligned_cols=28  Identities=18%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             ceEEEEecCCe--------EEEEeCCCcEEEEECCC
Q 045370          160 SITALAFSASH--------LISASEDKTVCLWDVTR  187 (350)
Q Consensus       160 ~i~~~~~~~~~--------l~s~~~dg~v~iwd~~~  187 (350)
                      .+..++|||.|        |++...++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999965        88888999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.59  E-value=3.9  Score=36.42  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTR   26 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~   26 (350)
                      |..+|++++.|+...=|.|.++|+.+
T Consensus       313 i~~sP~~~laA~tDslGRV~LiD~~~  338 (415)
T PF14655_consen  313 ICLSPSGRLAAVTDSLGRVLLIDVAR  338 (415)
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCC
Confidence            46789999888887789999999984

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.26  E-value=21  Score=34.98  Aligned_cols=76  Identities=16%  Similarity=0.044  Sum_probs=50.3

Q ss_pred             CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-c--cccccceeee------ccCCceEEEEecCCe--EEEE
Q 045370          106 PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-I--VGEDQHSVLK------GHNGSITALAFSASH--LISA  174 (350)
Q Consensus       106 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~~~~~------~~~~~i~~~~~~~~~--l~s~  174 (350)
                      ...|.++....-+..++.+..||.|.++|..+.+..... .  .....+..+.      .+...+..++|||++  ++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            356778887778889999999999999999887654333 0  0011111111      111245568899998  7778


Q ss_pred             eCCCcEE
Q 045370          175 SEDKTVC  181 (350)
Q Consensus       175 ~~dg~v~  181 (350)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.84  E-value=11  Score=36.63  Aligned_cols=67  Identities=16%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCcee-------------EEEEcC--CCcEEEEEcc----------CCeEEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVT-------------AIAFHP--GEQLLFAGSI----------DGRIFV  132 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i  132 (350)
                      ..++.++.|+.|.-.|..+|+....+...+.+.             .+.-.|  .+..+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            467788889999999999999887765443321             111122  2345666642          688999


Q ss_pred             EeCCcccccccc
Q 045370          133 SPLKFLLLEDHF  144 (350)
Q Consensus       133 ~d~~~~~~~~~~  144 (350)
                      +|.++++....+
T Consensus       341 ~Da~TGkl~W~~  352 (764)
T TIGR03074       341 FDVNTGALVWAW  352 (764)
T ss_pred             EECCCCcEeeEE
Confidence            999998866543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.67  E-value=10  Score=34.46  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEe---------CCCCceEEE---Ee---------cCCceeEEEEcCCC---cE
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWD---------LGSGILIQT---QV---------YPQAVTAIAFHPGE---QL  120 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd---------~~~~~~~~~---~~---------~~~~v~~~~~~~~~---~~  120 (350)
                      -.|..+..++ .|..++-.|.+|.+.++=         +..|+....   ++         ..-.+..++|||+.   .+
T Consensus       104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            3455565544 667777777788554332         122322211   11         11235667888864   56


Q ss_pred             EEEEccCCeEEEEeCCc
Q 045370          121 LFAGSIDGRIFVSPLKF  137 (350)
Q Consensus       121 l~~~~~dg~i~i~d~~~  137 (350)
                      +..-+.|..+++||+..
T Consensus       183 L~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEEecCcEEEEEecCC
Confidence            77777788888888773

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.55  E-value=10  Score=32.80  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCC----e-E-EEEeCC----
Q 045370          108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS----H-L-ISASED----  177 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~-l-~s~~~d----  177 (350)
                      ..+.|+|.|+|+.+++ ...|.|++++ ..+..... .....  ............++++|+    + | ++.+..    
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~-v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTP-VADLP--EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEE-EEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcce-ecccc--cccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            4578999999877665 5599999999 32222110 00000  123344567899999995    3 3 222211    


Q ss_pred             ----CcEEEEECCCc-------eEE-EEecc---CCCceeEEEEEccCCeEEeeecC
Q 045370          178 ----KTVCLWDVTRR-------VSI-RRFNH---KKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       178 ----g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                          ..|.-|....+       +.+ ..+..   ....-..|.|.|+|.+.++.+..
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence                23433433322       112 22222   23345679999999766655543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.17  E-value=17  Score=31.88  Aligned_cols=52  Identities=8%  Similarity=-0.121  Sum_probs=25.4

Q ss_pred             EEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCc-eeEEEE--cCCCcEEE
Q 045370           70 LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA-VTAIAF--HPGEQLLF  122 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-v~~~~~--~~~~~~l~  122 (350)
                      ...++. ...++-...+..|.--|+.+.+....+..+.. +-...|  +.++..++
T Consensus        86 ~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen   86 GFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             -EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred             eEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEE
Confidence            334454 44444444556888899999876655554333 333445  33555544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.44  E-value=9.2  Score=27.87  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             cEEEEEeCCCcEEEEeCCC--------CceEEEEecCCceeEEEEcC-----CCcEEEEEccCCeEEEEeCCcccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGS--------GILIQTQVYPQAVTAIAFHP-----GEQLLFAGSIDGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  144 (350)
                      ..|+.++.-|.|.|++...        ...+..+.....|++++--+     ....|+.|+ ...+..||+......   
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~---   86 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL---   86 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence            4577777888999998763        33455677788888887654     234677776 567889999843211   


Q ss_pred             ccccccceeeeccCCceEEEEec-----CCeEEEEeCCCcEEEEECCCceEEEEe
Q 045370          145 IVGEDQHSVLKGHNGSITALAFS-----ASHLISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                              -.+.-...++++.+-     +..++..+.+..|.-||....+...+.
T Consensus        87 --------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   87 --------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             --------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence                    112234667777663     222666666778888888776666554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.21  E-value=1.6  Score=40.98  Aligned_cols=98  Identities=18%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEE
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLW  183 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iw  183 (350)
                      .....++++.-+|.+..++.+..||.|.+|+........           +-.-..+-..+.|...||++...|..+.-|
T Consensus        12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-----------i~~~~~p~~nlv~tnhgl~~~tsdrr~la~   80 (1636)
T KOG3616|consen   12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-----------ICEEAKPKENLVFTNHGLVTATSDRRALAW   80 (1636)
T ss_pred             cccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-----------hhhhcCCccceeeeccceEEEeccchhhee
Confidence            344567888999999999999999999999976432211           111223445577777788888888888888


Q ss_pred             ECCCceEEEEecc---CCCceeEEEEEccCCeE
Q 045370          184 DVTRRVSIRRFNH---KKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       184 d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l  213 (350)
                      -- .|-....+..   .....+++...|..+-+
T Consensus        81 ~~-dgvvqqqfdyndqsekefss~~cdptaqnv  112 (1636)
T KOG3616|consen   81 KE-DGVVQQQFDYNDQSEKEFSSILCDPTAQNV  112 (1636)
T ss_pred             ec-cCcchhhccccchhhhhccceecCchhhhh
Confidence            43 3433333321   11234444455554433

>PRK13684 Ycf48-like protein; Provisional

Probab=87.19  E-value=19  Score=31.25  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEE-EeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKV-WDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~v-wd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      ...+.++.+.+ ++.+++++ ..|.+.. +|-. ++.-...  .....++++.+.++++.++++. .|.+.+=....+..
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCc
Confidence            45677777755 55555444 4564432 2222 2212222  2346789999999988777654 57664322222111


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEe---ccCCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRF---NHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      -..   ...   ........+..+.+.|++ ++.++.+|.+.. ....++.-...   ..-......+.|..+++.++ .
T Consensus       248 W~~---~~~---~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (334)
T PRK13684        248 WSK---PII---PEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L  319 (334)
T ss_pred             ccc---ccC---CccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence            000   000   000112357788898887 777777886653 33433332222   12223577888888888777 4


Q ss_pred             ecCcccc
Q 045370          217 SNCQRKL  223 (350)
Q Consensus       217 ~~~~~~~  223 (350)
                      +..+.++
T Consensus       320 G~~G~il  326 (334)
T PRK13684        320 GQRGVLL  326 (334)
T ss_pred             CCCceEE
Confidence            4444444

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.08  E-value=8.1  Score=29.79  Aligned_cols=32  Identities=9%  Similarity=0.098  Sum_probs=25.3

Q ss_pred             CCceEEEEeeCC-----CcEEEEEeCCCcEEEEeCCC
Q 045370           65 SSVTGLLTISGG-----TTFFVSSSLDATCKVWDLGS   96 (350)
Q Consensus        65 ~~v~~~~~~~~~-----~~~l~s~~~d~~v~vwd~~~   96 (350)
                      ..+..++|+|.+     +-+|++...++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999998743     35688888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=86.84  E-value=34  Score=33.81  Aligned_cols=113  Identities=9%  Similarity=0.080  Sum_probs=75.6

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      -.+.+.++..+  ++.++  ++-...|++|++.+++.++. ..+..++..+...-.|..+++|+.-+.+.+...+..+-.
T Consensus       828 v~Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~  903 (1096)
T KOG1897|consen  828 VKGAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGN  903 (1096)
T ss_pred             eccceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCc
Confidence            34566666543  44444  44568899999999865554 567788888888889999999998888877655532100


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                             -....-..++.+++++.+-.+. ++.+-.+|.+.+-...
T Consensus       904 -------f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  904 -------FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             -------eEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence                   0000112466788888877666 7777778887776543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.44  E-value=24  Score=31.64  Aligned_cols=61  Identities=10%  Similarity=0.042  Sum_probs=45.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      .++++.=+-||.+.+++-+.....+.++.---...++|.+.-..|++++.+..+..|....
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence            3678888999999999987655444444333344578889889999999998998887643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.42  E-value=18  Score=30.32  Aligned_cols=142  Identities=9%  Similarity=0.043  Sum_probs=90.1

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      +-+..+.+   .+++...+.++.-+++.|+.+......   +...+-..++..  .|++..++..|.-..++|+......
T Consensus        87 ~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            34455555   245677777888899999988654443   333344444444  6889999987766778888754321


Q ss_pred             cccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCce---EEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                             ............-..++.+.+.-..+..|+-+.+-|+.+..   .+.... ....+.++..+++.-+++....
T Consensus       162 -------~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e  233 (370)
T COG5276         162 -------QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE  233 (370)
T ss_pred             -------eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc
Confidence                   11113333344446788888886666778889999987643   344443 2336788888888777775554


Q ss_pred             C
Q 045370          219 C  219 (350)
Q Consensus       219 ~  219 (350)
                      .
T Consensus       234 g  234 (370)
T COG5276         234 G  234 (370)
T ss_pred             c
Confidence            4

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.28  E-value=18  Score=30.00  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             ceEEEEeeCCCcEEEEEeCCC--cEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           67 VTGLLTISGGTTFFVSSSLDA--TCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ..++.|.. ++.++-+.+.-|  .|+.+|+.+++.......+..  -..++.. +++.....=.++...+||..+.+...
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            34566644 567777777776  799999999998877664443  3334443 23344445568999999998654332


Q ss_pred             ccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                                .+. ..+.-..++.....|+.+.....|+++|..+.+...++.
T Consensus       125 ----------~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  125 ----------TFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             ----------EEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             ----------EEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence                      221 123345555444447767667799999998877766654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.13  E-value=19  Score=30.27  Aligned_cols=118  Identities=15%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             CCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEc------cCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           86 DATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGS------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      -..|++||+.+.+....- ...+.|+++.|..+...++.|.      ....+-.||+.+.........      .-..-+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~------~s~~ip   88 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG------SSNSIP   88 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCc------ccccCC
Confidence            346999998877655442 3567899999986666777664      355788888875433210000      001124


Q ss_pred             CceEEEEecCC---e-EEEEe-C--CCcEEEEECCCceEEEE-eccCCCceeEEEEEcc
Q 045370          159 GSITALAFSAS---H-LISAS-E--DKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       159 ~~i~~~~~~~~---~-l~s~~-~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~  209 (350)
                      ++|+.+.+...   . .+.|. .  +..|..||=.....+.. .......|..+.+-|-
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            67777777432   2 33333 2  34577787766666555 2223445666655443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.05  E-value=33  Score=32.83  Aligned_cols=42  Identities=19%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG   97 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~   97 (350)
                      +.++.........+..+-|+.  .+.|+....||++.+|++-..
T Consensus        73 G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   73 GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchh
Confidence            444444444455888888854  345778889999999998743

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.63  E-value=23  Score=30.77  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             CcEEEEeCCCCceEEE--EecC-CceeEEEEcCCCcEEEEEcc
Q 045370           87 ATCKVWDLGSGILIQT--QVYP-QAVTAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~  126 (350)
                      ..|.+||..+++....  +... ..-.+++ .-++++++.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence            4688899887765443  2221 1122222 235666666664

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.58  E-value=4.3  Score=22.28  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=24.5

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                      +++...++.|.++|..+++.+..+... .....++|
T Consensus         7 yv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         7 YVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            444456889999999999998888753 33345544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.49  E-value=27  Score=31.33  Aligned_cols=102  Identities=8%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             eeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--Ee---cCCceeEEEEcCCCcEEEEEccCCeEE
Q 045370           57 LHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QV---YPQAVTAIAFHPGEQLLFAGSIDGRIF  131 (350)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~  131 (350)
                      ...-....++|.++.|++ ++..+|.--.|.+|.+++....+....  ..   ....|...+|..+ .-++..+..| +-
T Consensus        59 iSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e  135 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IE  135 (657)
T ss_pred             ceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eE
Confidence            334445667999999966 678889988999999999854333222  12   2234888899865 4455544333 55


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH  170 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  170 (350)
                      +|....         ....++..+.|...|+-..|+++.
T Consensus       136 ~y~v~p---------ekrslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  136 FYQVLP---------EKRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             EEEEch---------hhhhhhhhhhcccCccEEEEcccc
Confidence            555442         233444667788888888898887

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.07  E-value=4.3  Score=37.97  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             CCCcEEEEEccCCeEEEEeCCccc----cccccccccc----cce--------eeeccCCceEEEEecC-----Ce-EEE
Q 045370          116 PGEQLLFAGSIDGRIFVSPLKFLL----LEDHFIVGED----QHS--------VLKGHNGSITALAFSA-----SH-LIS  173 (350)
Q Consensus       116 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~----~~~--------~~~~~~~~i~~~~~~~-----~~-l~s  173 (350)
                      ++...++++..||.+.........    ..........    ...        ........+..++++.     +. +++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            467788888889988888776521    0000000000    000        0011123444555544     22 889


Q ss_pred             EeCCCcEEEEECCCceEEEEe
Q 045370          174 ASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       174 ~~~dg~v~iwd~~~~~~~~~~  194 (350)
                      -+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.75  E-value=25  Score=30.38  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             ceEEEEeeCCCcEEEEEeCC------CcEEEEeCCCCceEEEEe----------------cCCceeEEEEcCCCcEEEEE
Q 045370           67 VTGLLTISGGTTFFVSSSLD------ATCKVWDLGSGILIQTQV----------------YPQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~  124 (350)
                      .-++++ +.++.++++.-.+      ..|..++.. |+....+.                ......+++++|+|+.|+++
T Consensus        87 ~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   87 PEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             hhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            346666 5677777777666      778888876 55543321                23458899999999977766


Q ss_pred             cc
Q 045370          125 SI  126 (350)
Q Consensus       125 ~~  126 (350)
                      .+
T Consensus       165 ~E  166 (326)
T PF13449_consen  165 ME  166 (326)
T ss_pred             EC
Confidence            43

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.73  E-value=48  Score=34.13  Aligned_cols=30  Identities=20%  Similarity=0.059  Sum_probs=21.7

Q ss_pred             cCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          196 HKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       196 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ++...+.+++.+|+|...++-.++.++-.+
T Consensus       659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~V  688 (1899)
T KOG4659|consen  659 AKLNSPYALAVSPDGDVIIADSGNSRIRKV  688 (1899)
T ss_pred             cccCCcceEEECCCCcEEEecCCchhhhhh
Confidence            355678999999999988866665544433

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.39  E-value=24  Score=29.87  Aligned_cols=152  Identities=15%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             cCCceEEEEeeCCC----cE-EEEEeCCCcEEEEeCCCCceEEEEec--------------------CCceeEEEEcC--
Q 045370           64 KSSVTGLLTISGGT----TF-FVSSSLDATCKVWDLGSGILIQTQVY--------------------PQAVTAIAFHP--  116 (350)
Q Consensus        64 ~~~v~~~~~~~~~~----~~-l~s~~~d~~v~vwd~~~~~~~~~~~~--------------------~~~v~~~~~~~--  116 (350)
                      ...+..+.....++    .+ .++=+..+.|.|+|+.+++..+...+                    ...+..++.+|  
T Consensus        60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~  139 (287)
T PF03022_consen   60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS  139 (287)
T ss_dssp             CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred             ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence            44566666655332    23 34444456899999998876554321                    12355555544  


Q ss_pred             -CCcEEEEEccCCeEEEEeCCcccccccccccc----ccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC--
Q 045370          117 -GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE----DQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR--  187 (350)
Q Consensus       117 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~--  187 (350)
                       ++++|+-..-.+ -++|.+.+..+........    ..+..+-........++++++|  +++--..+.|..|+..+  
T Consensus       140 ~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~  218 (287)
T PF03022_consen  140 PDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPY  218 (287)
T ss_dssp             TTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB
T ss_pred             CCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCc
Confidence             444554443222 1233333222221111111    1112221122456778888888  55666788999999886  


Q ss_pred             ----ceEEEEeccCCCceeEEEEEc--cCCeEEee
Q 045370          188 ----RVSIRRFNHKKGVVTNLVVIR--QSSLLSEV  216 (350)
Q Consensus       188 ----~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~  216 (350)
                          .+.+..-...-..+.++.+.+  +|.+.+.+
T Consensus       219 ~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  219 TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence                122322222245778899998  77666544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.38  E-value=26  Score=30.19  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=35.0

Q ss_pred             CCcEEEEEeC-----CCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCC----eEEEEeCCccc
Q 045370           76 GTTFFVSSSL-----DATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDG----RIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  139 (350)
                      ++.+++.|+.     ...+..||+.+.+....-  .........+...+++.++.|+.++    .+..||..+..
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            4566667664     235788888877654432  2111222222333567777776653    34577777543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.02  E-value=31  Score=30.88  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             ceEEEEeeCCCcEEEE-EeCCC---cEEEEeCCCC-----ceEEEEecCCceeEEEEcCCCcEEEEEc---cCCeEEEEe
Q 045370           67 VTGLLTISGGTTFFVS-SSLDA---TCKVWDLGSG-----ILIQTQVYPQAVTAIAFHPGEQLLFAGS---IDGRIFVSP  134 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s-~~~d~---~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d  134 (350)
                      ...+..+ .++++++. .....   .+.+.++..+     ...........+....-+..+.+++...   .++.|...+
T Consensus       229 ~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~  307 (414)
T PF02897_consen  229 FVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVD  307 (414)
T ss_dssp             EEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred             EEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEec
Confidence            3455554 45665554 33333   4777788764     3333344444444333333444444433   246777777


Q ss_pred             CCccccccccccccccceeeeccCC--ceEEEEecCCe-EEEEeCCC--cEEEEECCCceEEEEec-cCCCceeEEEEEc
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH-LISASEDK--TVCLWDVTRRVSIRRFN-HKKGVVTNLVVIR  208 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~-l~s~~~dg--~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~  208 (350)
                      +.......       ....+..+..  .+..+....+. ++....++  .|+++|+..+.....+. ...+.|..+...+
T Consensus       308 l~~~~~~~-------~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~  380 (414)
T PF02897_consen  308 LADPSPAE-------WWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDF  380 (414)
T ss_dssp             TTSTSGGG-------EEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-T
T ss_pred             cccccccc-------ceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCC
Confidence            77543211       0113334444  57777777777 55555554  68899998334444433 2344556655555


Q ss_pred             cCCeEE
Q 045370          209 QSSLLS  214 (350)
Q Consensus       209 ~~~~l~  214 (350)
                      ++..+.
T Consensus       381 ~~~~~~  386 (414)
T PF02897_consen  381 DSDELR  386 (414)
T ss_dssp             T-SEEE
T ss_pred             CCCEEE
Confidence            554333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.51  E-value=37  Score=31.27  Aligned_cols=119  Identities=14%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCc----eeEEEEcCCCcEEEEEcc-------------CCeEEEEeCCc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA----VTAIAFHPGEQLLFAGSI-------------DGRIFVSPLKF  137 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~  137 (350)
                      +++.+++..+  ..+..+|+. |+.+.....+..    -..+...|+|++|+.+..             .-.|..+| .+
T Consensus       157 ~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~t  232 (477)
T PF05935_consen  157 PNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PT  232 (477)
T ss_dssp             TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TT
T ss_pred             CCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CC
Confidence            3566554433  788888986 666666554442    367788899998887771             11233334 33


Q ss_pred             cccccccccccc--cce----------eee---ccC--CceEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEeccC
Q 045370          138 LLLEDHFIVGED--QHS----------VLK---GHN--GSITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFNHK  197 (350)
Q Consensus       138 ~~~~~~~~~~~~--~~~----------~~~---~~~--~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~  197 (350)
                      ++....+.....  +.+          ...   ...  --++++.+.+ +.  ++|+-.-..|...|.++++....+..+
T Consensus       233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            332221111100  000          000   011  2478899988 33  455445558999999999998888654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.45  E-value=13  Score=32.20  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMT   25 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~   25 (350)
                      |+|.|||++|++ ...|.|++++..
T Consensus         7 ~a~~pdG~l~v~-e~~G~i~~~~~~   30 (331)
T PF07995_consen    7 MAFLPDGRLLVA-ERSGRIWVVDKD   30 (331)
T ss_dssp             EEEETTSCEEEE-ETTTEEEEEETT
T ss_pred             EEEeCCCcEEEE-eCCceEEEEeCC
Confidence            689999987775 559999999833

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.35  E-value=31  Score=30.37  Aligned_cols=119  Identities=11%  Similarity=0.021  Sum_probs=58.7

Q ss_pred             EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-----eEEEEeCCccccccccccccccceeeecc--CCce
Q 045370           89 CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-----RIFVSPLKFLLLEDHFIVGEDQHSVLKGH--NGSI  161 (350)
Q Consensus        89 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~i  161 (350)
                      |.--|+.+|+....+.....+..+.|+|....+++=+..|     .-++|-++...         .....+..+  ...+
T Consensus       170 i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------SNVKKVHRRMEGESV  240 (386)
T ss_dssp             EEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------EESS---TTEEE
T ss_pred             EEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------CcceeeecCCCCccc
Confidence            5566788888877788888899999999666555544332     12556555321         111122222  2233


Q ss_pred             EEEEecCCe----EEE---EeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          162 TALAFSASH----LIS---ASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       162 ~~~~~~~~~----l~s---~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .-=-|.|+|    +..   ++.+..|.-+|+.++........  .+-..+--+++|++++.-+.
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCC
Confidence            334588888    212   22344677788888765432221  23344556788998884333

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.02  E-value=13  Score=30.70  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=50.6

Q ss_pred             ccCCceEEEEeeCC------CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC----CCcEEEEEccCCeEEE
Q 045370           63 HKSSVTGLLTISGG------TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP----GEQLLFAGSIDGRIFV  132 (350)
Q Consensus        63 h~~~v~~~~~~~~~------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i  132 (350)
                      +...|+|++....+      -..++.|.++|.|.+.|......+.....++....++..-    -.-.|++++.||.|++
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT  254 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence            45567777665422      2579999999999999999888888777665544444332    2346788889999876


Q ss_pred             E
Q 045370          133 S  133 (350)
Q Consensus       133 ~  133 (350)
                      .
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.45  E-value=27  Score=29.06  Aligned_cols=93  Identities=13%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             CCceeEEEEcCCCcEEEEEcc---------CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE
Q 045370          106 PQAVTAIAFHPGEQLLFAGSI---------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA  174 (350)
Q Consensus       106 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~  174 (350)
                      ........|++.|++-+++..         .+.|.+|+..                    .....+.|+..|+|  .++.
T Consensus       147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------------qG~gpyGi~atpdGsvwyas  206 (353)
T COG4257         147 DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------------QGGGPYGICATPDGSVWYAS  206 (353)
T ss_pred             CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------------CCCCCcceEECCCCcEEEEe
Confidence            356788999999998888753         1334444433                    22456778889998  4444


Q ss_pred             eCCCcEEEEECCCceEEEEec---cCCCceeEEEEEccCCeEEeeecC
Q 045370          175 SEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       175 ~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      -.+..|-..|..++.. ..+.   ........+--+|.|+.-++....
T Consensus       207 lagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~  253 (353)
T COG4257         207 LAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGT  253 (353)
T ss_pred             ccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCC
Confidence            4566777777776532 1221   212334455556667666654443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.11  E-value=37  Score=29.88  Aligned_cols=107  Identities=9%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCC---ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      .+..+..+|.|.-.|..++..+.......   .+..-.+..+|+ ++.++.+|.++.+|.+++..........       
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-------  141 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-------  141 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-------
Confidence            35666789989999999988765543321   222222222554 7888889989999987655443222221       


Q ss_pred             ccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370          156 GHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                       . ..+..-....++ +..++.++.+.-.|..+++......
T Consensus       142 -~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         142 -S-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             -C-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence             0 111222233344 5555578889988988888877654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.98  E-value=23  Score=29.81  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEe------CCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcC-CCcEEE-EEc-c
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSS------LDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHP-GEQLLF-AGS-I  126 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~-~~~-~  126 (350)
                      .+-.+.|.++.|.. +..+++.|.      ....+..||..+......-.     .++++..+.+.. ++..++ .|. .
T Consensus        33 ~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~  111 (281)
T PF12768_consen   33 NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA  111 (281)
T ss_pred             CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceec
Confidence            34567899999974 456666653      35578899998776533322     357788887754 343344 332 2


Q ss_pred             --CCeEEEEeCCccc
Q 045370          127 --DGRIFVSPLKFLL  139 (350)
Q Consensus       127 --dg~i~i~d~~~~~  139 (350)
                        +..|..||=..+.
T Consensus       112 ~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen  112 NGSTFLMKYDGSSWS  126 (281)
T ss_pred             CCCceEEEEcCCceE
Confidence              3456667655443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.43  E-value=9.1  Score=25.72  Aligned_cols=45  Identities=9%  Similarity=0.034  Sum_probs=32.0

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS  125 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  125 (350)
                      +.+..+|.+.-||..+++....+..-.-.+.|++++++..++.+-
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            345667889999999998766665555678999999999777653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.41  E-value=41  Score=29.75  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             cEEEEeCCCCceEEEEecC---CceeEEEEcCCCcEEEEEcc
Q 045370           88 TCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        88 ~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~  126 (350)
                      .|.+||..+++....-..+   ....++... +++.++.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence            5888998887655432211   112233332 4555556653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 44/187 (23%)
Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
           + FS DG  + S SDD  + +W+    L QT  L  HS                      
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHS---------------------- 385
Query: 61  XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
               SSV G+     G T   S+S D T K+W+  +G L+QT   +  +V  +AF P +Q
Sbjct: 386 ----SSVRGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQ 439
Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASED 177
            + + S D  + +      LL+            L GH+ S+  +AFS     + SAS+D
Sbjct: 440 TIASASDDKTVKLWNRNGQLLQ-----------TLTGHSSSVRGVAFSPDGQTIASASDD 488
Query: 178 KTVCLWD 184
           KTV LW+
Sbjct: 489 KTVKLWN 495

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Query: 80  FVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLFAGSIDGRIFV----SP 134
            ++ S D+T +VWD+ +G ++ T ++  +AV  + F+ G  ++   S D  I V    SP
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASP 243
Query: 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
               L             VL GH  ++  + F   +++SAS D+T+ +W+ +    +R  
Sbjct: 244 TDITL-----------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 195 N-HKKGVV 201
           N HK+G+ 
Sbjct: 293 NGHKRGIA 300

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 78  TFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK 136
           +  VS+S DAT KVWD  +G   +T + +  +V  I+F    +LL + S D  I +   +
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 137 FLLLEDHFIVGEDQHSVLKGHNGSITALAF--SASHLISASEDKTVCLWDVTRRVSIRRF 194
                     G +    + GH+ ++++++   +  H++SAS DKT+ +W+V     ++ F
Sbjct: 181 ----------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 195 NHKKGVVTNLVVIRQSSLLSEVSNCQ 220
              +  V  +   +  +L++  SN Q
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQ 256

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMXXXXXXXXXXXX 60
           + FS DG  L +G++D +I +W                  ++ R I M            
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIW-----------------DIENRKIVMILQGH------- 164
Query: 61  XXXKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGE-Q 119
              +  +  L     G    VS S D T ++WDL +G    T      VT +A  PG+ +
Sbjct: 165 ---EQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 120 LLFAGSIDG--RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISAS 175
            + AGS+D   R++ S   FL+     +  E++     GH  S+ ++ F+     ++S S
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLV---ERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGS 275
Query: 176 EDKTVCLWDV 185
            D++V LW++
Sbjct: 276 LDRSVKLWNL 285

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 81  VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL 140
           VS SLD + +VWD+ +G  I T    Q++T+      + +L +G+ D  + +  +K    
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIK---- 347
Query: 141 EDHFIVGEDQHSVLKG---HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF 194
                 G+   + L+G   H  ++T L F+ + +I++S+D TV LWD+     IR  
Sbjct: 348 -----TGQCLQT-LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 80  FVSSSLDATCKVWDLGSGILIQTQVYPQA----------VTAIAFHPGEQLLFAGSIDGR 129
           F + S D TC+++D+ +G   Q QVY +           VT++AF    +LLFAG  +G 
Sbjct: 264 FGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLW 183
            +V     LL E    +G  Q+S    H G I+ L  S   S L + S DK + +W
Sbjct: 322 CYV--WDTLLAEMVLNLGTLQNS----HEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L+++  T  FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
             +    F L  D  ++     +++ G    IT+++FS S   L++  +D    +WD 
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L+++  T  FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
             +    F L  D  ++     +++ G    IT+++FS S   L++  +D    +WD 
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L+++  T  FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D  
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR 187
             +    F L  D  ++     +++ G    IT+++FS S   L++  +D    +WD  +
Sbjct: 261 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALK 312

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L+++  T  FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
             +    F L  D  ++     +++ G    IT+++FS S   L++  +D    +WD 
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L+++  T  FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D  
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDV 185
             +    F L  D  ++     +++ G    IT+++FS S   L++  +D    +WD 
Sbjct: 250 CRL----FDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 80  FVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
           FVS   D    VWD+ SG  +Q  + +   V ++ ++P      +GS D    +  L+  
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-- 270
Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTR--RVSIRRFNH 196
              D  +    + S++ G   S    + S   L +   D T+ +WDV +  RVSI  F H
Sbjct: 271 --ADREVAIYSKESIIFG--ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGH 325
Query: 197 KKGVVT 202
           +  V T
Sbjct: 326 ENRVST 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.98
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.98
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.66
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.64
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.5
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.49
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.43
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.38
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.37
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.34
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.33
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.32
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.25
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.11
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.01
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.65
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.62
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.59
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.56
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.52
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.5
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.22
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.98
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.97
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.87
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.72
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.58
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.5
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.3
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.27
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.02
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.88
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.75
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.84
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.82
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.69
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.68
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.44
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.35
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.1
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.08
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.7
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.6
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.27
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.9
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.71
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.35
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.05
3ott_A	758	Two-component system sensor histidine kinase; beta	90.69
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.22
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.06
3ott_A	758	Two-component system sensor histidine kinase; beta	89.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.06
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.95
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	85.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	83.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.17
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.07
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	80.9

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=242.32  Aligned_cols=190  Identities=22%  Similarity=0.246  Sum_probs=161.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|||++|++|+.||+|++||+.                           ....+..+.+|...|.+++|++.+..+|
T Consensus       133 v~~spdg~~l~sgs~d~~i~iwd~~---------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          133 VSVLSSGTQAVSGSKDICIKVWDLA---------------------------QQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            5799999999999999999999998                           5677888899999999999988776789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++|+.|++|++||+++++....+.   +...+.+++|+|+ +.+|++|+.||.|++||+++          .+.+..+.+
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~----------~~~~~~~~~  255 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS----------TSCVLSSAV  255 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------------CCEEEEC
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC----------CcEEEEEcC
Confidence            999999999999999998887753   4557999999995 56889999999999999984          344558889


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCe-EEeeecCccccccccCC
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSL-LSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~~~~~~~~~~~~  229 (350)
                      |...|++++|+|++   |++|+.|++|+|||+++++++ .+.+|.+.|++++|+|+++. |++++.|+ .+.+|.++
T Consensus       256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~-~v~~w~v~  330 (344)
T 4gqb_B          256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH-QVVHHVVP  330 (344)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS-CEEEEECC
T ss_pred             CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC-eEEEEECC
Confidence            99999999999986   889999999999999998866 46789999999999999875 55556554 44455543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-32  Score=232.29  Aligned_cols=182  Identities=22%  Similarity=0.358  Sum_probs=165.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||++                           .......+..|...|.+++|+| ++.+|
T Consensus       128 ~~~spdg~~l~~g~~dg~v~i~~~~---------------------------~~~~~~~~~~~~~~v~~~~~sp-dg~~l  179 (321)
T 3ow8_A          128 LAFSPDSQYLATGTHVGKVNIFGVE---------------------------SGKKEYSLDTRGKFILSIAYSP-DGKYL  179 (321)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEETT---------------------------TCSEEEEEECSSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEEcC---------------------------CCceeEEecCCCceEEEEEECC-CCCEE
Confidence            4799999999999999999999998                           3555566778889999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|+.|++||+.+++.+..+. |..+|.+++|+|++.+|++|+.||.|++||++..          .....+.+|..
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~  249 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA----------NLAGTLSGHAS  249 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC----------CEEEEECCCSS
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc----------ceeEEEcCCCC
Confidence            999999999999999999888765 8889999999999999999999999999999853          33447789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .|.+++|+|++  |++++.|+.|++||+++++++..+..|...|.+++|+|++++|++++.|+
T Consensus       250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            99999999998  99999999999999999999999999999999999999999999888765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=234.93  Aligned_cols=194  Identities=22%  Similarity=0.263  Sum_probs=153.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+||+ .|++|+.||+|+|||+.++..                       .........+|.+.|.+++|++ ++.+|
T Consensus        88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-----------------------~~~~~~~~~~H~~~V~~v~~sp-dg~~l  142 (344)
T 4gqb_B           88 LTWVGER-GILVASDSGAVELWELDENET-----------------------LIVSKFCKYEHDDIVSTVSVLS-SGTQA  142 (344)
T ss_dssp             EEEETTT-EEEEEETTSEEEEEEECTTSS-----------------------CEEEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred             EEEeCCC-eEEEEECCCEEEEEeccCCCc-----------------------eeEeeccccCCCCCEEEEEECC-CCCEE
Confidence            4799985 788999999999999983110                       0111223468999999999966 78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++|+.|++|++||+.+++++..+. |...|.+++|+|++. +|++++.||.|++||++++......        ....|.
T Consensus       143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------~~~~~~  214 (344)
T 4gqb_B          143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--------GCSAPG  214 (344)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--------C----C
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--------ecceee
Confidence            999999999999999999988865 899999999999874 7899999999999999865432211        223466


Q ss_pred             CceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC-CeEEeeecCccccccccC
Q 045370          159 GSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~~~~~~~~~~  228 (350)
                      ..+++++|+|++   |++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|+ .+++|+.
T Consensus       215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-~i~vwd~  287 (344)
T 4gqb_B          215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-SLAVLDS  287 (344)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS-CEEEECT
T ss_pred             ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-eEEEEEC
Confidence            679999999965   7899999999999999999999999999999999999998 5778777664 3344443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-32  Score=240.55  Aligned_cols=189  Identities=20%  Similarity=0.290  Sum_probs=167.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++|++|+.||+|++||+.                           ....+..+.+|...|.+++|+| ++.++
T Consensus       156 v~~~~~~~~l~sgs~D~~i~iwd~~---------------------------~~~~~~~~~~h~~~V~~v~~~p-~~~~l  207 (410)
T 1vyh_C          156 ISFDHSGKLLASCSADMTIKLWDFQ---------------------------GFECIRTMHGHDHNVSSVSIMP-NGDHI  207 (410)
T ss_dssp             EEECTTSSEEEEEETTSCCCEEETT---------------------------SSCEEECCCCCSSCEEEEEECS-SSSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC---------------------------CCceeEEEcCCCCCEEEEEEeC-CCCEE
Confidence            5799999999999999999999998                           4566777889999999999976 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|++|++||+.++.++..+ .|...|.++.|+|++.+|++|+.||.|++||+++.          .....+.+|..
T Consensus       208 ~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----------~~~~~~~~h~~  277 (410)
T 1vyh_C          208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----------ECKAELREHRH  277 (410)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------CEEEEECCCSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------ceeeEecCCCc
Confidence            99999999999999999988875 48889999999999999999999999999999853          33446788999


Q ss_pred             ceEEEEecCC--------------------e--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          160 SITALAFSAS--------------------H--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       160 ~i~~~~~~~~--------------------~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      .|.+++|+|+                    +  |++|+.|+.|++||++++.++..+.+|...|.+++|+|++++|++++
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence            9999999985                    4  99999999999999999999999999999999999999999999887


Q ss_pred             cCccccccccC
Q 045370          218 NCQRKLKKDRM  228 (350)
Q Consensus       218 ~~~~~~~~~~~  228 (350)
                      .|+ .+++|+.
T Consensus       358 ~D~-~i~vwd~  367 (410)
T 1vyh_C          358 DDK-TLRVWDY  367 (410)
T ss_dssp             TTT-EEEEECC
T ss_pred             CCC-eEEEEEC
Confidence            664 3444444

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.3e-32  Score=229.67  Aligned_cols=227  Identities=15%  Similarity=0.164  Sum_probs=175.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++|++|+.||+|++||+.                           ....+..+..|..+|.++.|++ ++.+|
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~---------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~l   70 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYE---------------------------TQVEVRSIQVTETPVRAGKFIA-RKNWI   70 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECC---------------------------CCceeEEeeccCCcEEEEEEeC-CCCEE
Confidence            5899999999999999999999998                           4566777889999999999976 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|++|++||+.+++.+..+. |...|.+++|+|++.+|++|+.||.|++||++..         ......+.+|..
T Consensus        71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~---------~~~~~~~~~h~~  141 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN---------WALEQTFEGHEH  141 (304)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT---------TEEEEEECCCCS
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC---------cchhhhhcccCC
Confidence            999999999999999999888764 8899999999999999999999999999999853         122346788999


Q ss_pred             ceEEEEecCC-e--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEc--cCCeEEeeecCccccccccCCcc--
Q 045370          160 SITALAFSAS-H--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIR--QSSLLSEVSNCQRKLKKDRMPSL--  231 (350)
Q Consensus       160 ~i~~~~~~~~-~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~--  231 (350)
                      .|.+++|+|. +  |++|+.|+.|++||++++.....+. .|...+..+.|+|  ++.+|++++.|+ .+++|++...  
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~~~~  220 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQTKSC  220 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTTTEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCCCcc
Confidence            9999999994 4  9999999999999998877665554 4567889999987  667888777764 3334433221  


Q ss_pred             -------ccCCCCccccccceEEeeccccCCCCcccccccccch
Q 045370          232 -------EKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKS  268 (350)
Q Consensus       232 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (350)
                             ...+....++++...++   .+..++.+.+|...++.
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~---s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIII---SGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEE---EEETTSCEEEEETTTCC
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEE---EEcCCCeEEEEECCCCc
Confidence                   11222233344444333   23346666666555444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-32  Score=231.32  Aligned_cols=189  Identities=19%  Similarity=0.213  Sum_probs=166.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++.++++|+.|++|++||+.                           ....+..+..|...+.+++|+| ++.+|
T Consensus        86 ~~~~~~~~~l~s~s~D~~i~lWd~~---------------------------~~~~~~~~~~~~~~~~~~~~sp-dg~~l  137 (321)
T 3ow8_A           86 VDISHTLPIAASSSLDAHIRLWDLE---------------------------NGKQIKSIDAGPVDAWTLAFSP-DSQYL  137 (321)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCTTCCCCEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECC---------------------------CCCEEEEEeCCCccEEEEEECC-CCCEE
Confidence            4789999999999999999999998                           4566677778889999999965 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|+.|++||+.+++....+. +...+.+++|+|++++|++|+.||.|++||++++          +.+..+.+|..
T Consensus       138 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----------~~~~~~~~h~~  207 (321)
T 3ow8_A          138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----------KLLHTLEGHAM  207 (321)
T ss_dssp             EEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------EEEEEECCCSS
T ss_pred             EEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----------cEEEEEcccCC
Confidence            999999999999999998877754 6778999999999999999999999999999854          34447788999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +|++++|+|++  |++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+ .+++|++
T Consensus       208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~-~v~iwd~  277 (321)
T 3ow8_A          208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK-SVKVWDV  277 (321)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred             ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCC-cEEEEeC
Confidence            99999999998  99999999999999999999999999999999999999999999888764 3344443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-32  Score=240.22  Aligned_cols=182  Identities=20%  Similarity=0.245  Sum_probs=164.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++.+|++|+.||+|+|||+.                           .......+.+|.+.|.+++|++ ++.+|
T Consensus       114 ~~~~p~~~~l~s~s~Dg~i~vwd~~---------------------------~~~~~~~l~~h~~~V~~v~~~~-~~~~l  165 (410)
T 1vyh_C          114 VIFHPVFSVMVSASEDATIKVWDYE---------------------------TGDFERTLKGHTDSVQDISFDH-SGKLL  165 (410)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETT---------------------------TCCCCEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEeccCCcEEEEEEcC-CCCEE
Confidence            5799999999999999999999998                           4666778889999999999965 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|++|++||+.+++++..+ .|...|.+++|+|++.+|++|+.|+.|++||++++          ..+..+.+|..
T Consensus       166 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----------~~~~~~~~h~~  235 (410)
T 1vyh_C          166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----------YCVKTFTGHRE  235 (410)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------CEEEEEECCSS
T ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------cEEEEEeCCCc
Confidence            99999999999999998888775 58889999999999999999999999999999853          34457889999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc--------------------CCeEEeee
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ--------------------SSLLSEVS  217 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~~~~  217 (350)
                      .|.++.++|++  +++|+.|+.|++||+++++....+..|...|.+++|+|+                    +.+|++++
T Consensus       236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            99999999998  999999999999999999999999999999999999996                    56788777


Q ss_pred             cCc
Q 045370          218 NCQ  220 (350)
Q Consensus       218 ~~~  220 (350)
                      .|+
T Consensus       316 ~D~  318 (410)
T 1vyh_C          316 RDK  318 (410)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=230.43  Aligned_cols=188  Identities=22%  Similarity=0.234  Sum_probs=156.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++||+|+.|++|+|||+....                        .........+|...|.+++|+| ++.+|
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~------------------------~~~~~~~~~~h~~~v~~~~~sp-~g~~l   76 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDS------------------------WICKSVLSEGHQRTVRKVAWSP-CGNYL   76 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTE------------------------EEEEEEECSSCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCc------------------------ceeeeeeccccCCcEEEEEECC-CCCEE
Confidence            5899999999999999999999987210                        0011122368999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|+.|++|++||+..+.  .+..+ .|...|.+++|+|++++|++|+.|+.|++||++....       ......+.+|
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~~~h  149 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-------YECVSVLNSH  149 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-------EEEEEEECCC
T ss_pred             EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-------eEEEEEecCc
Confidence            999999999999998774  34444 4889999999999999999999999999999975321       1233467789


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ...|.+++|+|++  |++|+.|+.|++||.+++.  +...+.+|...|.+++|+|++++|++++.|+
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            9999999999998  9999999999999998875  4567889999999999999999999888774

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-31  Score=227.30  Aligned_cols=187  Identities=17%  Similarity=0.236  Sum_probs=156.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      ++|+|+|++||+|+.|++|+|||+...                         .......+.+|.++|.+++|.++ ++.+
T Consensus        15 ~~~s~~g~~las~s~D~~v~iw~~~~~-------------------------~~~~~~~l~gH~~~V~~v~~s~~~~g~~   69 (297)
T 2pm7_B           15 AVMDYYGKRMATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHEGPVWRVDWAHPKFGTI   69 (297)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEBCSS-------------------------CBCCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEecCCC-------------------------CcEEEEEEccccCCeEEEEecCCCcCCE
Confidence            579999999999999999999998620                         13456778899999999999764 4789


Q ss_pred             EEEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           80 FVSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      |++|+.|++|++||+.++.  .+..+ .|...|.+++|+|+  +.+|++++.||.|++||++....        .....+
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------~~~~~~  141 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------TSPIII  141 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------BCCEEE
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------eeeeee
Confidence            9999999999999999874  33333 48889999999997  88999999999999999985321        112366


Q ss_pred             eccCCceEEEEecCC-------------e--EEEEeCCCcEEEEECCCce----EEEEeccCCCceeEEEEEccC---Ce
Q 045370          155 KGHNGSITALAFSAS-------------H--LISASEDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQS---SL  212 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~-------------~--l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~---~~  212 (350)
                      .+|...|.+++|+|+             +  |++|+.|+.|++||++++.    ....+.+|...|.+++|+|++   .+
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~  221 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  221 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceE
Confidence            789999999999996             2  9999999999999998765    667888999999999999995   78


Q ss_pred             EEeeecCc
Q 045370          213 LSEVSNCQ  220 (350)
Q Consensus       213 l~~~~~~~  220 (350)
                      |++++.|+
T Consensus       222 las~s~D~  229 (297)
T 2pm7_B          222 MASVSQDR  229 (297)
T ss_dssp             EEEEETTS
T ss_pred             EEEEECCC
Confidence            88777764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-31  Score=232.04  Aligned_cols=191  Identities=24%  Similarity=0.326  Sum_probs=163.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++|++|+.||+|++||+.                           ....+..+.+|...|.+++|++.+..++
T Consensus       145 v~~spdg~~l~sgs~dg~v~iwd~~---------------------------~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDFSVKVWDLS---------------------------QKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            5799999999999999999999998                           4677778889999999999987666789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++++.|++|++||+++++....+.   +...+.+++|+|+ +.+|++|+.|+.|++||++++          .....+.+
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~----------~~~~~~~~  267 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP----------DSAQTSAV  267 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG----------GGCEEECC
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC----------cEeEEEec
Confidence            999999999999999988766543   5667999999997 568899999999999999854          34457889


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeeecCccccccccCCc
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                      |...|++++|+|++   |++|+.|++|+|||+++++++..+ +|.+.|++|+|+| ++.+|++++.|+. +.+|+++.
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~-v~iW~~~~  343 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHK-VLHHHLPS  343 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECC-
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECCC
Confidence            99999999999986   889999999999999999988766 5999999999999 7889998887653 34555443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-31  Score=225.43  Aligned_cols=181  Identities=20%  Similarity=0.276  Sum_probs=158.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.|++|++||+.                           .......+.+|...|.+++|++ ++.++
T Consensus        71 ~~~s~dg~~l~s~s~D~~v~~wd~~---------------------------~~~~~~~~~~h~~~v~~~~~~~-~~~~l  122 (319)
T 3frx_A           71 CTLTADGAYALSASWDKTLRLWDVA---------------------------TGETYQRFVGHKSDVMSVDIDK-KASMI  122 (319)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCSSCEEEEEECT-TSCEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECC---------------------------CCCeeEEEccCCCcEEEEEEcC-CCCEE
Confidence            4799999999999999999999998                           4666778889999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCC------CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG------EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      ++|+.|++|++||++.........|...+.++.|.|.      +..+++++.|+.|++||++...          ....+
T Consensus       123 ~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----------~~~~~  192 (319)
T 3frx_A          123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----------IEADF  192 (319)
T ss_dssp             EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----------EEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----------hheee
Confidence            9999999999999986554444678899999999985      4489999999999999998533          33467


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+|...|++++|+|++  |++|+.||.|++||+++++.+..+.. ...|.+++|+|++.+|++++.++
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC
Confidence            7899999999999998  99999999999999999999999885 47899999999999999877664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-30  Score=221.71  Aligned_cols=190  Identities=20%  Similarity=0.243  Sum_probs=161.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.|++|++||+.                           ....+..+.+|.+.|.+++|+| ++.++
T Consensus        61 ~~~~~~~~~l~s~s~d~~i~vwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~~-~~~~l  112 (304)
T 2ynn_A           61 GKFIARKNWIIVGSDDFRIRVFNYN---------------------------TGEKVVDFEAHPDYIRSIAVHP-TKPYV  112 (304)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCSSCEEEEEECS-SSSEE
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECC---------------------------CCcEEEEEeCCCCcEEEEEEcC-CCCEE
Confidence            4689999999999999999999998                           4667778889999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceE-EEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILI-QTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~-~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|+.|++|++||+.++... ..+ .|...|.+++|+| ++.+|++|+.|+.|++||++....         ......+|
T Consensus       113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---------~~~~~~~~  183 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---------NFTLTTGQ  183 (304)
T ss_dssp             EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---------SEEEECCC
T ss_pred             EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---------cceeccCC
Confidence            99999999999999987443 333 5888999999999 678999999999999999975321         11233456


Q ss_pred             CCceEEEEecC--Ce--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          158 NGSITALAFSA--SH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       158 ~~~i~~~~~~~--~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ...+..+.|+|  ++  |++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+. +++|+.
T Consensus       184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~  257 (304)
T 2ynn_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNS  257 (304)
T ss_dssp             TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEET
T ss_pred             cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEEC
Confidence            68899999987  44  999999999999999999999999999999999999999999998887743 334433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.98  E-value=1.3e-30  Score=225.16  Aligned_cols=181  Identities=18%  Similarity=0.307  Sum_probs=159.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||++|++|+.||+|++||+.                           .......+..|...|.+++|+| ++.++
T Consensus        61 ~~~s~d~~~l~s~s~Dg~v~iWd~~---------------------------~~~~~~~~~~~~~~v~~~~~s~-~~~~l  112 (340)
T 1got_B           61 MHWGTDSRLLLSASQDGKLIIWDSY---------------------------TTNKVHAIPLRSSWVMTCAYAP-SGNYV  112 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETT---------------------------TCCEEEEEECSSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECC---------------------------CCCcceEeecCCccEEEEEECC-CCCEE
Confidence            5799999999999999999999998                           4566677788999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCc----eEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           81 VSSSLDATCKVWDLGSGI----LIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++|+.|+.|++|++.++.    .... ..|...|.++.|++++. +++++.|+.|++||+.++          .....+.
T Consensus       113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~----------~~~~~~~  181 (340)
T 1got_B          113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG----------QQTTTFT  181 (340)
T ss_dssp             EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT----------EEEEEEC
T ss_pred             EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC----------cEEEEEc
Confidence            999999999999998753    2233 35888999999998775 888999999999999853          3444778


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +|...|.+++|+|++  +++|+.|+.|++||++++..+..+.+|...|.+++|+|++++|++++.|+
T Consensus       182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            999999999999998  99999999999999999999999999999999999999999999888764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=6e-31  Score=230.64  Aligned_cols=212  Identities=19%  Similarity=0.308  Sum_probs=166.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc----------------cccc--ccEEEeecc----cccccee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS----------------DQLD--QRLIEMELR----SLRSLLH   58 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~----~~~~~~~   58 (350)
                      ++|+|+|++|+||+.||+|+|||+.+.........+..                ...+  ..+|.+...    .......
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            57999999999999999999999876443221111110                0111  233333211    1122345


Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE------ecCCceeEEEEcC-CCcEEEEEccCCeEE
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ------VYPQAVTAIAFHP-GEQLLFAGSIDGRIF  131 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  131 (350)
                      .+.+|.+.|.++.|.+.++..|++|+.|++|++||+.+++.+..+      .|...|.+++|++ ++++|++|+.||.|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            678999999999998877778999999999999999999988765      3677899999987 889999999999999


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC-------Ccee
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK-------GVVT  202 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------~~v~  202 (350)
                      +||++.         .......+.+|...|++++|+|++  |++|+.||+|++||+++++.+..+..+.       ..|+
T Consensus       232 ~wd~~~---------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          232 LWDLRI---------TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             EEETTT---------TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred             EEECCC---------CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE
Confidence            999973         234455788999999999999998  9999999999999999999988876432       2489


Q ss_pred             EEEEEccCCeEEeeecCcc
Q 045370          203 NLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~~~  221 (350)
                      +++|+|+|++|++++.++.
T Consensus       303 ~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          303 SVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             EEEECSSSSEEEEECTTSC
T ss_pred             EEEECCCCCEEEEEECCCC
Confidence            9999999999998877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.98  E-value=1.5e-30  Score=225.84  Aligned_cols=184  Identities=21%  Similarity=0.280  Sum_probs=162.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      ++|+|++.+|++|+.||+|++||++                           ....+..+.+|...|.++.+.+. ++.+
T Consensus       160 ~~~~~~~~~l~t~s~D~~v~lwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          160 CSFTNSDMQILTASGDGTCALWDVE---------------------------SGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCC---------------------------CCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            4689999999999999999999998                           46677788899999999999764 4589


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee--c
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK--G  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~  156 (350)
                      |++|+.||+|++||+++++++..+. |...|.+++|+|++.+|++|+.|+.|++||++.....          ..+.  .
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~----------~~~~~~~  282 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV----------AIYSKES  282 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----------EEECCTT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----------EEEcCCC
Confidence            9999999999999999999888764 8889999999999999999999999999999854321          1222  2


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      +...+.+++|+|++  |++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|+.
T Consensus       283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            34578999999998  999999999999999999999999999999999999999999999888754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.98  E-value=1.7e-30  Score=224.36  Aligned_cols=191  Identities=17%  Similarity=0.250  Sum_probs=160.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.|+.|++||+.+..                       ........+.+|...|.++.|.+. + .+
T Consensus       103 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~~~-~-~l  157 (340)
T 1got_B          103 CAYAPSGNYVACGGLDNICSIYNLKTRE-----------------------GNVRVSRELAGHTGYLSCCRFLDD-N-QI  157 (340)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTCS-----------------------BSCEEEEEEECCSSCEEEEEEEET-T-EE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECccCC-----------------------CcceeEEEecCCCccEEEEEECCC-C-cE
Confidence            4799999999999999999999987310                       012344567789999999999763 3 48


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|++|++||+.+++.+..+. |...|.+++|+|++.++++|+.||.|++||++.+          .....+.+|..
T Consensus       158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----------~~~~~~~~h~~  227 (340)
T 1got_B          158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----------MCRQTFTGHES  227 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------SEEEEECCCSS
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----------eeEEEEcCCcC
Confidence            999999999999999999888764 8889999999999999999999999999999853          34447789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      .|++++|+|++  |++|+.||.|++||+++++.+..+..  +...|.+++|+|++++|++++.++. +.+|+
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd  298 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWD  298 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEE
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEE
Confidence            99999999998  99999999999999999988877753  3347999999999999998887753 33443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.98  E-value=2e-30  Score=228.33  Aligned_cols=190  Identities=24%  Similarity=0.377  Sum_probs=160.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||++|++|+.||+|++||+.                           .......+.+|...|.+++|++ ++.+|
T Consensus       129 v~~s~dg~~l~s~~~d~~i~iwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~p-~~~~l  180 (393)
T 1erj_A          129 VCFSPDGKFLATGAEDRLIRIWDIE---------------------------NRKIVMILQGHEQDIYSLDYFP-SGDKL  180 (393)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECC---------------------------CCcEEEEEccCCCCEEEEEEcC-CCCEE
Confidence            4799999999999999999999998                           4566777889999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|++|++||+.+++....+.+...+.+++|+| ++.+|++|+.||.|++||++++.......   .......+|..
T Consensus       181 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~---~~~~~~~~h~~  257 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---SENESGTGHKD  257 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSS
T ss_pred             EEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec---ccccCCCCCCC
Confidence            999999999999999999988888889999999999 89999999999999999998654332110   01112357999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCc------------eEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRR------------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .|++++|+|++  |++|+.|+.|++||+++.            .+...+.+|...|.+++|+|++.+|++++.|+.
T Consensus       258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence            99999999998  999999999999999763            345667789999999999999999998887754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=4.7e-30  Score=222.74  Aligned_cols=182  Identities=18%  Similarity=0.243  Sum_probs=159.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+||+++|+||+.||+|+|||..                           .......+..|...|.+++|+| ++.++
T Consensus        70 ~~~s~d~~~l~s~s~Dg~v~vWd~~---------------------------~~~~~~~~~~~~~~v~~~~~sp-~g~~l  121 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDGKVIVWDSF---------------------------TTNKEHAVTMPCTWVMACAYAP-SGCAI  121 (354)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETT---------------------------TCCEEEEEECSSSCCCEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECC---------------------------CCCcceEEecCCCCEEEEEECC-CCCEE
Confidence            5799999999999999999999987                           3455566677889999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCc-------eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           81 VSSSLDATCKVWDLGSGI-------LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++|+.|+.+++|++....       ......|...|.+++|+|++..|++++.|+.|++||++++          ..+..
T Consensus       122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----------~~~~~  191 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----------QLLQS  191 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----------CEEEE
T ss_pred             EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----------eEEEE
Confidence            999999999999986531       2223468899999999999999999999999999999853          34457


Q ss_pred             eeccCCceEEEEecCC--e--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          154 LKGHNGSITALAFSAS--H--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~--~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +.+|...|.+++++|+  +  |++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            8899999999999874  3  99999999999999999999999999999999999999999999888764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.5e-29  Score=215.72  Aligned_cols=182  Identities=23%  Similarity=0.323  Sum_probs=162.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++|++.                           .......+.+|...|.+++|++ ++.+|
T Consensus        29 ~~~s~~~~~l~s~~~dg~i~iw~~~---------------------------~~~~~~~~~~h~~~v~~~~~~~-~~~~l   80 (312)
T 4ery_A           29 VKFSPNGEWLASSSADKLIKIWGAY---------------------------DGKFEKTISGHKLGISDVAWSS-DSNLL   80 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TCCEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEeeCCCeEEEEeCC---------------------------CcccchhhccCCCceEEEEEcC-CCCEE
Confidence            5799999999999999999999997                           3556667789999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|+.|++||+.+++.+..+. |...|.+++|+|++++|++|+.||.|++||++++          .....+..|..
T Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~  150 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----------KCLKTLPAHSD  150 (312)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----------CEEEEECCCSS
T ss_pred             EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------EEEEEecCCCC
Confidence            999999999999999999888764 8889999999999999999999999999999853          33447778999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +|.+++|+|++  +++++.||.|++||+++++.+..+. .+..++..++|+|++++|++++.++
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            99999999998  9999999999999999998887764 4567899999999999999888765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.9e-30  Score=218.20  Aligned_cols=186  Identities=21%  Similarity=0.276  Sum_probs=161.7

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|++ ++|+||+.|++|++|++....                      ......+..+.+|...|.+++|++ ++.+
T Consensus        23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~----------------------~~~~~~~~~~~~h~~~v~~~~~s~-dg~~   79 (319)
T 3frx_A           23 LATSAGQPNLLLSASRDKTLISWKLTGDD----------------------QKFGVPVRSFKGHSHIVQDCTLTA-DGAY   79 (319)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEEEEET----------------------TEEEEEEEEEECCSSCEEEEEECT-TSSE
T ss_pred             EEccCCCccEEEEecCCccEEEecCCCCC----------------------ccccccceEEeCCcccEEEEEECC-CCCE
Confidence            4789865 899999999999999987210                      001334567789999999999965 7889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++|+.|++|++||+.+++.+..+ .|...|.+++|+|++.+|++|+.|+.|++||++.           .....+.+|.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~  148 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----------QCLATLLGHN  148 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----------CEEEEECCCS
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEeccC
Confidence            999999999999999999988775 5899999999999999999999999999999873           2334677899


Q ss_pred             CceEEEEecCC------e--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSAS------H--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~------~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..|.++.++|.      +  +++++.|+.|++||+++++....+.+|..+|.+++|+|++++|++++.|+
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg  218 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG  218 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            99999999984      2  99999999999999999999999999999999999999999999888774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.3e-31  Score=226.44  Aligned_cols=188  Identities=15%  Similarity=0.154  Sum_probs=155.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      ++|+|+|++||+|+.|++|+|||+.+.                         ....+..+.+|.+.|.+++|.++ ++.+
T Consensus        19 v~~s~~g~~lasgs~D~~v~lwd~~~~-------------------------~~~~~~~l~gH~~~V~~v~~~~~~~~~~   73 (316)
T 3bg1_A           19 AQMDYYGTRLATCSSDRSVKIFDVRNG-------------------------GQILIADLRGHEGPVWQVAWAHPMYGNI   73 (316)
T ss_dssp             EEECGGGCEEEEEETTTEEEEEEEETT-------------------------EEEEEEEEECCSSCEEEEEECCGGGSSC
T ss_pred             eeEcCCCCEEEEEeCCCeEEEEEecCC-------------------------CcEEEEEEcCCCccEEEEEeCCCCCCCE
Confidence            579999999999999999999998721                         11245567899999999999764 4788


Q ss_pred             EEEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           80 FVSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      |++|+.|++|++||+.++.  ....+ .|...|.+++|+|+  +.+|++|+.||.|++||++.....       .....+
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-------~~~~~~  146 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-------EVKKIN  146 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-------EECCBT
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-------ceeeee
Confidence            9999999999999999874  33333 48889999999997  789999999999999998853210       112245


Q ss_pred             eccCCceEEEEecCC-----------------e--EEEEeCCCcEEEEECCCc---eEEEEeccCCCceeEEEEEccC--
Q 045370          155 KGHNGSITALAFSAS-----------------H--LISASEDKTVCLWDVTRR---VSIRRFNHKKGVVTNLVVIRQS--  210 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~-----------------~--l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~--  210 (350)
                      .+|...|.+++|+|+                 +  |++|+.|+.|++||++..   +.+..+.+|...|.+++|+|++  
T Consensus       147 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~  226 (316)
T 3bg1_A          147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL  226 (316)
T ss_dssp             TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred             ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence            678899999999986                 2  999999999999999764   5777888999999999999987  


Q ss_pred             --CeEEeeecCc
Q 045370          211 --SLLSEVSNCQ  220 (350)
Q Consensus       211 --~~l~~~~~~~  220 (350)
                        .+|++++.|+
T Consensus       227 ~~~~las~s~D~  238 (316)
T 3bg1_A          227 PTSTIASCSQDG  238 (316)
T ss_dssp             SCCEEEEEETTC
T ss_pred             CCceEEEEcCCC
Confidence              7888887775

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.2e-30  Score=232.80  Aligned_cols=185  Identities=18%  Similarity=0.234  Sum_probs=153.5

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+| ++++||+|+.||+|+|||+.+.                         .......+.+|.+.|.+++|+|.++.+
T Consensus       125 l~~~P~~~~~lasGs~dg~i~lWd~~~~-------------------------~~~~~~~~~gH~~~V~~l~f~p~~~~~  179 (435)
T 4e54_B          125 LAWHPTHPSTVAVGSKGGDIMLWNFGIK-------------------------DKPTFIKGIGAGGSITGLKFNPLNTNQ  179 (435)
T ss_dssp             EEECSSCTTCEEEEETTSCEEEECSSCC-------------------------SCCEEECCCSSSCCCCEEEECSSCTTE
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEEECCCC-------------------------CceeEEEccCCCCCEEEEEEeCCCCCE
Confidence            58999 5679999999999999999731                         122344567899999999998878889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      |++|+.||+|++||++++.......   +...+.+++|+|++.+|++|+.||.|++||++.           ..+..+.+
T Consensus       180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-----------~~~~~~~~  248 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-----------KELWNLRM  248 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-----------CBCCCSBC
T ss_pred             EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-----------ceeEEEec
Confidence            9999999999999998765544433   334578999999999999999999999999873           23346778


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEe---ccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRF---NHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      |...|++++|+|++   +++|+.|+.|++||+++.+....+   .+|..+|++++|+|++.+|++++.|+.
T Consensus       249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            99999999999987   889999999999999986654433   468899999999999999998887753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=219.68  Aligned_cols=186  Identities=20%  Similarity=0.276  Sum_probs=154.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.|++|++||+...                         .......+.+|...|.+++|+| ++.+|
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~-------------------------~~~~~~~~~~h~~~v~~v~~sp-~~~~l  120 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQD-------------------------DFECVTTLEGHENEVKSVAWAP-SGNLL  120 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC--------------------------EEEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCC-------------------------CeEEEEEccCCCCCceEEEEeC-CCCEE
Confidence            579999999999999999999998721                         1234567789999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCce---EEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSGIL---IQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++|+.|++|++||+.++..   +..+ .|...|.+++|+|++.+|++++.|+.|++||.+....        .....+.+
T Consensus       121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--------~~~~~~~~  192 (345)
T 3fm0_A          121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--------VCCATLEG  192 (345)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--------EEEEEECC
T ss_pred             EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--------EEEEEecC
Confidence            9999999999999987643   2333 4788999999999999999999999999999875321        12346788


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCC---------------ceEEEEecc-CCCceeEEEEEccCCeEEeeec
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTR---------------RVSIRRFNH-KKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~---------------~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      |...|++++|+|++  |++|+.|++|++||...               ..++..+.+ |...|.+++|+|++..|++++.
T Consensus       193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~  272 (345)
T 3fm0_A          193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG  272 (345)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence            99999999999998  99999999999999632               234555554 8889999999999999998887


Q ss_pred             Cc
Q 045370          219 CQ  220 (350)
Q Consensus       219 ~~  220 (350)
                      |+
T Consensus       273 d~  274 (345)
T 3fm0_A          273 DD  274 (345)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.6e-29  Score=218.53  Aligned_cols=179  Identities=16%  Similarity=0.280  Sum_probs=148.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++.+|++|+.|++|++||+.                           .......+.+|...|.+++|+| ++.+|
T Consensus        82 ~~~~~~~~~l~s~s~D~~v~lwd~~---------------------------~~~~~~~~~~h~~~v~~v~~sp-~~~~l  133 (343)
T 2xzm_R           82 LALSQENCFAISSSWDKTLRLWDLR---------------------------TGTTYKRFVGHQSEVYSVAFSP-DNRQI  133 (343)
T ss_dssp             EEECSSTTEEEEEETTSEEEEEETT---------------------------SSCEEEEEECCCSCEEEEEECS-STTEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECC---------------------------CCcEEEEEcCCCCcEEEEEECC-CCCEE
Confidence            4799999999999999999999998                           4566777889999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCCC----------cEEEEEccCCeEEEEeCCccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPGE----------QLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      ++|+.|++|++||+.........   .|...|.+++|+|++          .+|++++.||.|++||..           
T Consensus       134 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----------  202 (343)
T 2xzm_R          134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----------  202 (343)
T ss_dssp             EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-----------
T ss_pred             EEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-----------
Confidence            99999999999999844333322   477889999999987          799999999999999954           


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ......+.+|...|++++|+|++  |++|+.||.|++||+.+ ......+. +...|.+++|+|+++++++++.+
T Consensus       203 ~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~  276 (343)
T 2xzm_R          203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQ  276 (343)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESS
T ss_pred             CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCC
Confidence            22334677899999999999998  99999999999999954 44444443 45679999999999988865443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=1.5e-29  Score=219.80  Aligned_cols=218  Identities=19%  Similarity=0.199  Sum_probs=161.2

Q ss_pred             CeecCCCCEEEEEeC------CCcEEEEeCccccccccccc---ccc----------------ccccccEEEeeccccc-
Q 045370            1 MVFSDDGFLLISGSD------DGMICVWSMTRLLKQTSELM---HHS----------------DQLDQRLIEMELRSLR-   54 (350)
Q Consensus         1 i~~s~dg~~l~sg~~------dg~i~vwd~~~~~~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~-   54 (350)
                      |+|||||++||+|+.      |+.|++|+..+.........   .+.                ...++.+..++..... 
T Consensus        48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~  127 (357)
T 4g56_B           48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKES  127 (357)
T ss_dssp             EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC-------
T ss_pred             EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccce
Confidence            589999999999997      78899998765432211110   010                0112222222211111 


Q ss_pred             --cceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeE
Q 045370           55 --SLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRI  130 (350)
Q Consensus        55 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i  130 (350)
                        .......+|...|.+++|+| ++.+|++|+.|++|++||+.+++.+..+. |...|.+++|+|++. ++++++.||.|
T Consensus       128 ~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v  206 (357)
T 4g56_B          128 LLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI  206 (357)
T ss_dssp             -CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred             eEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence              11223458999999999966 77899999999999999999999888865 889999999999875 78899999999


Q ss_pred             EEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                      ++||++++.....        .....|...+++++|+|++   |++|+.|+.|++||+++++.+..+.+|...|++++|+
T Consensus       207 ~~wd~~~~~~~~~--------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s  278 (357)
T 4g56_B          207 LLWDTRKPKPATR--------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS  278 (357)
T ss_dssp             EECCTTSSSCBCB--------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred             EEEECCCCceeee--------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence            9999986543221        1334577889999999975   8899999999999999999999999999999999999


Q ss_pred             ccC-CeEEeeecCccccccccC
Q 045370          208 RQS-SLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       208 ~~~-~~l~~~~~~~~~~~~~~~  228 (350)
                      |++ ++|++++.|+ .+++|+.
T Consensus       279 p~~~~~lasgs~D~-~i~iwd~  299 (357)
T 4g56_B          279 YHSSPFLASISEDC-TVAVLDA  299 (357)
T ss_dssp             SSSSCCEEEEETTS-CEEEECT
T ss_pred             CCCCCEEEEEeCCC-EEEEEEC
Confidence            997 5777777654 3344443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=7.2e-29  Score=230.57  Aligned_cols=214  Identities=17%  Similarity=0.160  Sum_probs=163.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccc-ccccccccc-------ccc--------------cEEEeecccccccee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT-SELMHHSDQ-------LDQ--------------RLIEMELRSLRSLLH   58 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~   58 (350)
                      ++|||||++||+|+.||+|+|||+.+..... .....+..+       .++              .++.++   ......
T Consensus        65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd---~~~~~~  141 (611)
T 1nr0_A           65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD---TGTSNG  141 (611)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT---TCCBCB
T ss_pred             EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee---CCCCcc
Confidence            5899999999999999999999986432211 111111111       111              122222   233445


Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      .+.+|...|.+++|+|.+...|++|+.|++|++||..++++...+ .|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            678999999999998755557999999999999999988887776 4889999999999999999999999999999886


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEE----------------------
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRR----------------------  193 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~----------------------  193 (350)
                      +.......   .......+|...|.+++|+|++  |++++.|++|++||+++++.+..                      
T Consensus       222 g~~~~~~~---~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          222 GTKTGVFE---DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             CCEEEECB---CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             CcEeeeec---cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            54322110   0000122799999999999998  99999999999999998766543                      


Q ss_pred             ---------------------eccCCCceeEEEEEccCCeEEeeecCc
Q 045370          194 ---------------------FNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       194 ---------------------~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                                           +.+|...|++++|+|++++|++++.|+
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                                 346888999999999999999888775

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.4e-29  Score=219.10  Aligned_cols=192  Identities=14%  Similarity=0.121  Sum_probs=153.3

Q ss_pred             CeecCCCCEEEEEe--CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGS--DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|||||++|++++  .|++|+|||+.                           .......+ .|...|.+++|+| ++.
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~---------------------------~~~~~~~~-~~~~~V~~v~fsp-dg~  189 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPS---------------------------DLTEKFEI-ETRGEVKDLHFST-DGK  189 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETT---------------------------TTEEEEEE-ECSSCCCEEEECT-TSS
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECC---------------------------CCcEEEEe-CCCCceEEEEEcc-CCc
Confidence            47999999987544  78999999998                           34444444 5788999999965 788


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCC----eEEEEeCCccccccccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDG----RIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ++++++. +.+.+|+..++.....   ..|...+.+++|+|++.++++++.|+    .++.|++......      ....
T Consensus       190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~------~~~~  262 (365)
T 4h5i_A          190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS------VLRS  262 (365)
T ss_dssp             EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE------EEEE
T ss_pred             eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec------ceee
Confidence            8998885 4577777777766544   24677899999999999999999887    6888887643221      1223


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          152 SVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ..+.+|...|++++|+|++  |++|+.|+.|+|||+++++++..+ .+|..+|++|+|+|||++|++++.|. .+++|++
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-tvrvw~i  341 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-TIHIIKL  341 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-EEEEEEC
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-eEEEEEc
Confidence            4677899999999999999  999999999999999999999886 68999999999999999999888764 4445554


Q ss_pred             C
Q 045370          229 P  229 (350)
Q Consensus       229 ~  229 (350)
                      +
T Consensus       342 p  342 (365)
T 4h5i_A          342 P  342 (365)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=3.6e-29  Score=219.32  Aligned_cols=199  Identities=22%  Similarity=0.257  Sum_probs=157.6

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-----ccccCCceEEEEee
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-----LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~   74 (350)
                      +.|+|++ .+|++|+.|++|++||+.+                           ...+..+     .+|...|.++.|++
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~---------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTT---------------------------GQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTT---------------------------CCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCC---------------------------CcEEEEeecccCCCCccCeEEEEeec
Confidence            3577764 5799999999999999983                           3333222     57999999999988


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCC-CceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           75 GGTTFFVSSSLDATCKVWDLGS-GILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .++.++++|+.|++|++||++. +..+..+ .|...|.+++|+|++.+|++|+.||.|++||++++..........   .
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~---~  292 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP---D  292 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC---S
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc---c
Confidence            7889999999999999999984 4555554 589999999999999999999999999999999754332111100   0


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe----ccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF----NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ....+...|++++|+|++  |++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|++|++++.|+ .+++|
T Consensus       293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~iW  371 (380)
T 3iz6_a          293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-NLKIW  371 (380)
T ss_dssp             SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-CEEEE
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-CEEEE
Confidence            111233458999999999  999999999999999999888777    57999999999999999999887764 34445


Q ss_pred             cCCc
Q 045370          227 RMPS  230 (350)
Q Consensus       227 ~~~~  230 (350)
                      .+..
T Consensus       372 ~~~~  375 (380)
T 3iz6_a          372 AFSG  375 (380)
T ss_dssp             ECCS
T ss_pred             ecCC
Confidence            4443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.2e-29  Score=215.45  Aligned_cols=194  Identities=19%  Similarity=0.273  Sum_probs=163.1

Q ss_pred             CeecCC---CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDD---GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~d---g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      |+|+|+   |++|++|+.||.|++||+.+.                         .......+.+|...|.+++|++ ++
T Consensus        45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~~~v~~~~~~~-~~   98 (368)
T 3mmy_A           45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDS-------------------------GQTIPKAQQMHTGPVLDVCWSD-DG   98 (368)
T ss_dssp             EEECCTTSSSEEEEEEETTSEEEEEEECTT-------------------------SCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             EEEcCCCCCceEEEEECCCCcEEEEEcCCC-------------------------CceeEEEeccccCCEEEEEECc-CC
Confidence            579999   699999999999999999820                         1222356778999999999976 77


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEE--cCCCcEEEEEccCCeEEEEeCCccccccccccc--------
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAF--HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG--------  147 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------  147 (350)
                      .+|++++.||.|++||+.+++......|...|.+++|  +|++.+|++++.||.|++||++.+.........        
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  178 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV  178 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEe
Confidence            8999999999999999999999888899999999999  899999999999999999999865422110000        


Q ss_pred             ---------------------------------------------------------------------c---ccceeee
Q 045370          148 ---------------------------------------------------------------------E---DQHSVLK  155 (350)
Q Consensus       148 ---------------------------------------------------------------------~---~~~~~~~  155 (350)
                                                                                           .   .....+.
T Consensus       179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence                                                                                 0   1222344


Q ss_pred             ccCC------------ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          156 GHNG------------SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       156 ~~~~------------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +|..            .|++++|+|++  |++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            5544            69999999998  99999999999999999999999999999999999999999999998875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.6e-28  Score=212.26  Aligned_cols=188  Identities=19%  Similarity=0.255  Sum_probs=154.9

Q ss_pred             cC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            4 SD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         4 s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      ++ |+++|+||+.|++|++||+.......                    ........+.+|...|.+++|++ ++.++++
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s   93 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSDLALSQ-ENCFAIS   93 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEEEEECS-STTEEEE
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEEEEECC-CCCEEEE
Confidence            55 89999999999999999987311000                    01234556789999999999966 6789999


Q ss_pred             EeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370           83 SSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI  161 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (350)
                      |+.|++|++||+.+++.+..+ .|...|.+++|+|++++|++++.|+.|++||+......        ......+|...|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~--------~~~~~~~~~~~v  165 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF--------SSAEKENHSDWV  165 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE--------ECCTTTSCSSCE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee--------eeecccCCCcee
Confidence            999999999999999888775 48999999999999999999999999999998732111        011223688999


Q ss_pred             EEEEecCCe------------EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          162 TALAFSASH------------LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       162 ~~~~~~~~~------------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .+++|+|++            +++++.||.|++|| .+.+....+.+|...|.+++|+|++++|++++.|+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            999999862            89999999999999 456777888899999999999999999998887753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.5e-29  Score=213.81  Aligned_cols=204  Identities=18%  Similarity=0.184  Sum_probs=163.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      |+|+|+|++|++|+.||.|++||+.+..                       ........+.+|...|.+++|++. ++.+
T Consensus        17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A           17 VVYDFYGRHVATCSSDQHIKVFKLDKDT-----------------------SNWELSDSWRAHDSSIVAIDWASPEYGRI   73 (351)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECSSS-----------------------CCEEEEEEEECCSSCEEEEEECCGGGCSE
T ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCC-----------------------CcceecceeccCCCcEEEEEEcCCCCCCE
Confidence            5799999999999999999999998310                       011345667789999999999875 4789


Q ss_pred             EEEEeCCCcEEEEeCCCC---------ceEEEE-ecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCcccccccccc-
Q 045370           80 FVSSSLDATCKVWDLGSG---------ILIQTQ-VYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIV-  146 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~---------~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  146 (350)
                      |++|+.||.|++||+.++         +....+ .|...|.+++|+|+  +.+|++++.||.|++||++.......... 
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence            999999999999999986         334443 58899999999999  99999999999999999987653221100 


Q ss_pred             -----------------------------------------------cc--ccceeeeccCCceEEEEecCC-----e-E
Q 045370          147 -----------------------------------------------GE--DQHSVLKGHNGSITALAFSAS-----H-L  171 (350)
Q Consensus       147 -----------------------------------------------~~--~~~~~~~~~~~~i~~~~~~~~-----~-l  171 (350)
                                                                     ..  .....+.+|...|++++|+|+     . |
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                                                           00  114456789999999999999     4 9


Q ss_pred             EEEeCCCcEEEEECCCc----------------------------------------------eEEEEeccCCCceeEEE
Q 045370          172 ISASEDKTVCLWDVTRR----------------------------------------------VSIRRFNHKKGVVTNLV  205 (350)
Q Consensus       172 ~s~~~dg~v~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~  205 (350)
                      ++|+.||.|++||++++                                              +.+..+.+|...|++++
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            99999999999999875                                              67777888999999999


Q ss_pred             EEccCCeEEeeecCccccccccC
Q 045370          206 VIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      |+|++++|++++.|+ .+.+|++
T Consensus       314 ~s~~~~~l~s~~~dg-~v~iw~~  335 (351)
T 3f3f_A          314 WNLTGTILSSAGDDG-KVRLWKA  335 (351)
T ss_dssp             ECSSSCCEEEEETTS-CEEEEEE
T ss_pred             EcCCCCEEEEecCCC-cEEEEec
Confidence            999999999888764 3444444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1e-28  Score=217.40  Aligned_cols=192  Identities=20%  Similarity=0.313  Sum_probs=157.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.|++|++||+.+                           ...... ..+...+.+++|++.++.++
T Consensus       171 ~~~~p~~~~l~s~s~d~~v~iwd~~~---------------------------~~~~~~-~~~~~~v~~~~~~~~~~~~l  222 (393)
T 1erj_A          171 LDYFPSGDKLVSGSGDRTVRIWDLRT---------------------------GQCSLT-LSIEDGVTTVAVSPGDGKYI  222 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTT---------------------------TEEEEE-EECSSCEEEEEECSTTCCEE
T ss_pred             EEEcCCCCEEEEecCCCcEEEEECCC---------------------------CeeEEE-EEcCCCcEEEEEECCCCCEE
Confidence            57999999999999999999999982                           333222 24667899999988788999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE--------ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc--ccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ--------VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI--VGEDQ  150 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~  150 (350)
                      ++|+.|+.|++||+.++..+..+        .|...|.+++|+|++.+|++|+.||.|++||++.........  .....
T Consensus       223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence            99999999999999999877664        477899999999999999999999999999998643221110  11223


Q ss_pred             ceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc------cCCeEEeeecCc
Q 045370          151 HSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR------QSSLLSEVSNCQ  220 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~------~~~~l~~~~~~~  220 (350)
                      ...+.+|...|.+++|+|++  |++|+.|+.|++||+.+++.+..+.+|.+.|.+++|++      ++.+|++++.|+
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             eEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            44677899999999999998  99999999999999999999999999999999999986      678899888774

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.2e-29  Score=212.88  Aligned_cols=190  Identities=23%  Similarity=0.280  Sum_probs=147.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|++++|++|+.|++|+|||+......                    .........+.+|...|.+++|+| ++.+|
T Consensus        64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~~~V~~v~~sp-~g~~l  122 (330)
T 2hes_X           64 VAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHENEVKGVAWSN-DGYYL  122 (330)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC----CEEEEEECT-TSCEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCCCcEEEEEECC-CCCEE
Confidence            579999999999999999999998621000                    001234566789999999999966 67899


Q ss_pred             EEEeCCCcEEEEeCCCC----ceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           81 VSSSLDATCKVWDLGSG----ILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++|+.|++|++||+...    +++..+ .|...|.+++|+|++.+|++++.|+.|++||.....        ...+..+.
T Consensus       123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------~~~~~~~~  194 (330)
T 2hes_X          123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--------WECVAVLN  194 (330)
T ss_dssp             EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------EEEEEEEC
T ss_pred             EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--------eeEEEEcc
Confidence            99999999999999532    344444 488899999999999999999999999999986431        13445778


Q ss_pred             ccCCceEEEEecCC--e--EEEEeCCCcEEEEECCCc--------eEEEEecc-CCCceeEEEEEccCCeEEeeecCc
Q 045370          156 GHNGSITALAFSAS--H--LISASEDKTVCLWDVTRR--------VSIRRFNH-KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       156 ~~~~~i~~~~~~~~--~--l~s~~~dg~v~iwd~~~~--------~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +|...|.+++|+|+  +  |++|+.|++|++||++++        .....+.. |...|.+++|++++ +|++++.|+
T Consensus       195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence            99999999999998  4  899999999999999765        45555554 88999999999766 677777664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=7.4e-30  Score=223.37  Aligned_cols=184  Identities=14%  Similarity=0.084  Sum_probs=150.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccc--cceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLR--SLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|+|++|++|+.||.|++||+.+                           .  .....+.+|...|.+++|++ ++.
T Consensus        17 ~~~s~~g~~l~~~~~d~~i~iw~~~~---------------------------~~~~~~~~~~~h~~~v~~~~~s~-~~~   68 (377)
T 3dwl_C           17 HAFNSQRTEFVTTTATNQVELYEQDG---------------------------NGWKHARTFSDHDKIVTCVDWAP-KSN   68 (377)
T ss_dssp             CEECSSSSEEECCCSSSCBCEEEEET---------------------------TEEEECCCBCCCSSCEEEEEECT-TTC
T ss_pred             EEECCCCCEEEEecCCCEEEEEEccC---------------------------CceEEEEEEecCCceEEEEEEeC-CCC
Confidence            68999999999999999999999982                           3  45666788999999999976 678


Q ss_pred             EEEEEeCCCcEEEEeCCCCc---eEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           79 FFVSSSLDATCKVWDLGSGI---LIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +|++++.|++|++||+.++.   .... ..|...|.+++|+|++++|++++.|+.|++||++....       ......+
T Consensus        69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~  141 (377)
T 3dwl_C           69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-------WWVSKHL  141 (377)
T ss_dssp             CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------------CCCCEEE
T ss_pred             EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-------ceeeeEe
Confidence            89999999999999999877   3333 46889999999999999999999999999999985431       1123356


Q ss_pred             ec-cCCceEEEEecCCe--EEEEeCCCcEEEEECC------------------CceEEEEeccCCCceeEEEEEccCCeE
Q 045370          155 KG-HNGSITALAFSASH--LISASEDKTVCLWDVT------------------RRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       155 ~~-~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      .. |...|++++|+|++  |++++.|+.|++||++                  .++++..+ .|...|.+++|+|++++|
T Consensus       142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL  220 (377)
T ss_dssp             CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE
T ss_pred             ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE
Confidence            66 99999999999998  9999999999999985                  46677777 899999999999999999


Q ss_pred             EeeecCc
Q 045370          214 SEVSNCQ  220 (350)
Q Consensus       214 ~~~~~~~  220 (350)
                      ++++.++
T Consensus       221 ~~~~~d~  227 (377)
T 3dwl_C          221 AYAGHDS  227 (377)
T ss_dssp             EEEETTT
T ss_pred             EEEeCCC
Confidence            9888774

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-28  Score=210.18  Aligned_cols=186  Identities=21%  Similarity=0.204  Sum_probs=146.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-cc-ccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LE-HKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|+  +|++|+.|++|++||+...                         .......+ .+ |...|.+++|+| ++.
T Consensus        20 ~~~s~~--~las~~~D~~i~lw~~~~~-------------------------~~~~~~~~~~~~h~~~v~~v~~sp-~~~   71 (330)
T 2hes_X           20 FDFSQG--ILATGSTDRKIKLVSVKYD-------------------------DFTLIDVLDETAHKKAIRSVAWRP-HTS   71 (330)
T ss_dssp             EEEETT--EEEEEESSSCEEEEECSSS-------------------------CCEEEEEECTTCCCSCEEEEEECT-TSS
T ss_pred             eccCCC--EEEEEcCCCEEEEEEecCC-------------------------CeEEEEEEecCCccCCEEEEEECC-CCC
Confidence            367776  9999999999999999721                         01222333 34 999999999966 678


Q ss_pred             EEEEEeCCCcEEEEeCCC-------CceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGS-------GILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      +|++|+.|++|++||+..       ...+..+ .|...|.+++|+|++++|++|+.|+.|++||++....      ....
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~------~~~~  145 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------EYEC  145 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC------CCEE
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC------CeEE
Confidence            999999999999999853       2344443 5889999999999999999999999999999953210      1123


Q ss_pred             ceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc--eEEEEeccCCCceeEEEEEcc--CCeEEeeecCc
Q 045370          151 HSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR--VSIRRFNHKKGVVTNLVVIRQ--SSLLSEVSNCQ  220 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~~~  220 (350)
                      +..+.+|...|++++|+|++  |++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++++.|+
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence            44678899999999999998  999999999999999876  678889999999999999999  66788777664

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.2e-28  Score=227.72  Aligned_cols=180  Identities=27%  Similarity=0.363  Sum_probs=158.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|||++|++++.|+.|++||..                            ...+..+.+|...|.+++|+| ++.++
T Consensus       391 ~~~s~dg~~l~~~~~d~~v~~~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~-d~~~l  441 (577)
T 2ymu_A          391 VAFSPDGQTIASASDDKTVKLWNRN----------------------------GQLLQTLTGHSSSVWGVAFSP-DDQTI  441 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECTT----------------------------CCEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCC----------------------------CCEEEEecCCCCCeEEEEECC-CCCEE
Confidence            5799999999999999999999975                            455677789999999999965 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++++.|++|++||...........|...|.+++|+|++++|++++.|+.|++||..           .+....+.+|...
T Consensus       442 ~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-----------~~~~~~~~~h~~~  510 (577)
T 2ymu_A          442 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----------GQLLQTLTGHSSS  510 (577)
T ss_dssp             EEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-----------SCEEEEEECCSSC
T ss_pred             EEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-----------CCEEEEEeCCCCC
Confidence            99999999999997644333335689999999999999999999999999999954           2344578899999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      |++++|+|++  |++++.||.|++||. +++.+..+.+|.++|++++|+|++++|++++.|+.
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            9999999999  999999999999996 67889999999999999999999999998887753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-28  Score=211.06  Aligned_cols=193  Identities=19%  Similarity=0.267  Sum_probs=169.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++|++|+.||.|++||+.                           .......+.+|...|.+++|++ ++.+|
T Consensus        38 ~~~s~~~~~l~~~~~dg~i~vwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~~-~~~~l   89 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDSSASVWYSL---------------------------NGERLGTLDGHTGTIWSIDVDC-FTKYC   89 (369)
T ss_dssp             EEECTTSCEEEEEESSSCEEEEETT---------------------------TCCEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCC---------------------------CchhhhhhhhcCCcEEEEEEcC-CCCEE
Confidence            5799999999999999999999998                           4667777889999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccccccccc-cccccceee
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLLLEDHFI-VGEDQHSVL  154 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~-~~~~~~~~~  154 (350)
                      ++++.||.|++||+.+++.+..+.+...+.+++|+|++.++++++.+     |.|.+||+.......... ........+
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~  169 (369)
T 3zwl_B           90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI  169 (369)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence            99999999999999999999999999999999999999999999998     999999998765332211 122344566


Q ss_pred             eccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          155 KGHNG--SITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       155 ~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ..|..  .+.+++|+|++  +++++.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence            67776  99999999998  99999999999999999 7889999999999999999999999998887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=4.8e-28  Score=212.40  Aligned_cols=181  Identities=18%  Similarity=0.240  Sum_probs=153.8

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee--ccccCCceEEEEeeCCC
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS--LEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~   77 (350)
                      ++|+|+| ++|++|+.||.|+|||+.+                           ......+  .+|...|.+++|++.++
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGSKGGDIILWDYDV---------------------------QNKTSFIQGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             EEECSSCTTEEEEEEBTSCEEEEETTS---------------------------TTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred             EEECCCCCCEEEEEcCCCeEEEEeCCC---------------------------cccceeeecCCcCCceeEEEeCCCCC
Confidence            5799999 9999999999999999982                           3333333  47999999999987677


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .+|++++.|+.|++||+.+........   +...|.+++|+|++.+|++++.||.|++||++           ......+
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~  200 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-----------GHEIFKE  200 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-----------SCEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-----------CCEEEEe
Confidence            899999999999999999644433333   34779999999999999999999999999985           2234477


Q ss_pred             eccCCceEEEEecCCe---EEEEeCCCcEEEEECCC----ceEEEEeccCCCceeEEEEEc-cCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH---LISASEDKTVCLWDVTR----RVSIRRFNHKKGVVTNLVVIR-QSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~~  220 (350)
                      .+|...|.+++|+|++   +++|+.|+.|++||+++    +.++..+ .|...|.+++|+| ++.+|++++.++
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~  273 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN  273 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence            7899999999999987   89999999999999998    6677777 5899999999999 999999888764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=1.2e-28  Score=232.50  Aligned_cols=181  Identities=23%  Similarity=0.317  Sum_probs=156.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||+|+|||+.                           .......+.+|...|.+++|++ ++.+|
T Consensus       436 v~~s~~g~~l~sgs~Dg~v~vwd~~---------------------------~~~~~~~~~~h~~~v~~~~~s~-~~~~l  487 (694)
T 3dm0_A          436 VVLSSDGQFALSGSWDGELRLWDLA---------------------------AGVSTRRFVGHTKDVLSVAFSL-DNRQI  487 (694)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECC---------------------------CCcceeEEeCCCCCEEEEEEeC-CCCEE
Confidence            4799999999999999999999998                           4566677889999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCC--cEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGE--QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      ++|+.|++|++||..........    .|...|.+++|+|++  ..+++++.|+.|++||++..          .....+
T Consensus       488 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----------~~~~~~  557 (694)
T 3dm0_A          488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----------KLRSTL  557 (694)
T ss_dssp             EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----------CEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----------cEEEEE
Confidence            99999999999998765443332    377789999999986  68999999999999999853          334477


Q ss_pred             eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          155 KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+|...|++++|+|++  |++|+.||.|++||+++++.+..+. +...|.+++|+|++.+|++++.+.
T Consensus       558 ~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTE
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCC
Confidence            8999999999999998  9999999999999999999998887 457899999999999998766543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=4e-28  Score=205.49  Aligned_cols=195  Identities=16%  Similarity=0.187  Sum_probs=153.0

Q ss_pred             CeecC--CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-C
Q 045370            1 MVFSD--DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-T   77 (350)
Q Consensus         1 i~~s~--dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~   77 (350)
                      |+|+|  +|++|+||+.||+|++||+.++                         .......+.+|...|.+++|+|.. +
T Consensus        59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-------------------------~~~~~~~~~~h~~~v~~v~~~p~~~g  113 (297)
T 2pm7_B           59 VDWAHPKFGTILASCSYDGKVMIWKEENG-------------------------RWSQIAVHAVHSASVNSVQWAPHEYG  113 (297)
T ss_dssp             EEECCGGGCSEEEEEETTTEEEEEEBSSS-------------------------CBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred             EEecCCCcCCEEEEEcCCCEEEEEEcCCC-------------------------ceEEEEEeecCCCceeEEEeCcCCCC
Confidence            46876  4899999999999999999721                         012345567899999999998742 6


Q ss_pred             cEEEEEeCCCcEEEEeCCCCc---eEEEEecCCceeEEEEcCC-------------CcEEEEEccCCeEEEEeCCccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGI---LIQTQVYPQAVTAIAFHPG-------------EQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      .+|++|+.|++|++||++++.   ......|...|.+++|+|+             +++|++|+.|+.|++||++.....
T Consensus       114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred             cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence            789999999999999998763   2233468889999999997             579999999999999998753210


Q ss_pred             cccccccccceeeeccCCceEEEEecCC----e-EEEEeCCCcEEEEECCCce---EEEEe--ccCCCceeEEEEEccCC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSAS----H-LISASEDKTVCLWDVTRRV---SIRRF--NHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~-l~s~~~dg~v~iwd~~~~~---~~~~~--~~~~~~v~~l~~~~~~~  211 (350)
                            ......+.+|...|.+++|+|+    . |++++.|++|+|||+++..   ....+  ..|...|.+++|+|+++
T Consensus       194 ------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          194 ------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             ------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             ------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence                  1123467899999999999997    3 9999999999999998742   12233  45788999999999999


Q ss_pred             eEEeeecCcccccccc
Q 045370          212 LLSEVSNCQRKLKKDR  227 (350)
Q Consensus       212 ~l~~~~~~~~~~~~~~  227 (350)
                      +|++++.|+. +++|.
T Consensus       268 ~las~~~D~~-v~lw~  282 (297)
T 2pm7_B          268 VLALSGGDNK-VTLWK  282 (297)
T ss_dssp             CEEEEETTSC-EEEEE
T ss_pred             EEEEEcCCCc-EEEEE
Confidence            9998887653 34443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-28  Score=213.29  Aligned_cols=188  Identities=19%  Similarity=0.240  Sum_probs=158.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-CCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-GTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~   79 (350)
                      ++|+|+|++|++|+.||.|+|||+...                         .......+.+|...|.+++|+++ ++.+
T Consensus        17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~   71 (379)
T 3jrp_A           17 AVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHEGPVWRVDWAHPKFGTI   71 (379)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred             EEEcCCCCEEEEEECCCcEEEEecCCC-------------------------cceeeeEecCCCCcEEEEEeCCCCCCCE
Confidence            579999999999999999999998720                         23455677889999999999764 2789


Q ss_pred             EEEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           80 FVSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      |++|+.||.|++||+.+++  ....+ .|...|.+++|+|+  +.+|++++.||.|++||++....        .....+
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~~~~~~  143 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIII  143 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--------CCEEEE
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--------eeeEEe
Confidence            9999999999999999986  44443 48889999999999  99999999999999999986422        223356


Q ss_pred             eccCCceEEEEecC-------------Ce--EEEEeCCCcEEEEECCCce----EEEEeccCCCceeEEEEEcc---CCe
Q 045370          155 KGHNGSITALAFSA-------------SH--LISASEDKTVCLWDVTRRV----SIRRFNHKKGVVTNLVVIRQ---SSL  212 (350)
Q Consensus       155 ~~~~~~i~~~~~~~-------------~~--l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~---~~~  212 (350)
                      ..|...|++++|+|             ++  +++++.||.|++||++++.    .+..+..|..+|.+++|+|+   +.+
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  223 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  223 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence            78999999999999             45  9999999999999998653    56677889999999999999   889


Q ss_pred             EEeeecCcc
Q 045370          213 LSEVSNCQR  221 (350)
Q Consensus       213 l~~~~~~~~  221 (350)
                      |++++.++.
T Consensus       224 l~s~~~dg~  232 (379)
T 3jrp_A          224 LASVSQDRT  232 (379)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEeCCCE
Confidence            998887753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=219.83  Aligned_cols=209  Identities=15%  Similarity=0.188  Sum_probs=156.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc------------CCce
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK------------SSVT   68 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~   68 (350)
                      |+|+|+|++||+|+.||.|+|||+.+.......                ..........+.+|.            ..|.
T Consensus        34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~----------------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSH----------------SRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECC-----CC----------------CCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc----------------cccceeEecccccccccccccccccccCceE
Confidence            589999999999999999999999842210000                000112455667887            8899


Q ss_pred             EEEEeeCCC-cEEEEEeCCCcEEEEeCCCCceE---------------------------------------EE--EecC
Q 045370           69 GLLTISGGT-TFFVSSSLDATCKVWDLGSGILI---------------------------------------QT--QVYP  106 (350)
Q Consensus        69 ~~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~---------------------------------------~~--~~~~  106 (350)
                      +++|++.+. .++++++.|++|++||+.++...                                       ..  ..|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            999987533 68999999999999998764432                                       11  2488


Q ss_pred             CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEE
Q 045370          107 QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLW  183 (350)
Q Consensus       107 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iw  183 (350)
                      ..|.+++|+|++++|++| .||.|++||++.........  ......+.+|...|++++|+|++   |++|+.||.|++|
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIV--DIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE--ECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeee--ecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            899999999999999999 79999999998432111000  00011466899999999999986   9999999999999


Q ss_pred             ECCCceE----EEEeccCCC------------ceeEEEEEccCCeEEeeecCccccccccCCc
Q 045370          184 DVTRRVS----IRRFNHKKG------------VVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       184 d~~~~~~----~~~~~~~~~------------~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (350)
                      |+++++.    +..+..|..            .|.+++|+|++++|++++.  ..+.+|++..
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~  315 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM  315 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence            9999886    677877765            8999999999999997776  5566665543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.3e-29  Score=219.24  Aligned_cols=196  Identities=14%  Similarity=0.067  Sum_probs=152.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.||+|++||+.+..                        .......+..|...|.+++|++ ++.+|
T Consensus        61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~l  115 (377)
T 3dwl_C           61 VDWAPKSNRIVTCSQDRNAYVYEKRPDG------------------------TWKQTLVLLRLNRAATFVRWSP-NEDKF  115 (377)
T ss_dssp             EEECTTTCCEEEEETTSSEEEC------------------------------CCCCEEECCCCSSCEEEEECCT-TSSCC
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCC------------------------ceeeeeEecccCCceEEEEECC-CCCEE
Confidence            5799999999999999999999998310                        0124556678999999999976 67889


Q ss_pred             EEEeCCCcEEEEeCCCCce---EEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc--------cc
Q 045370           81 VSSSLDATCKVWDLGSGIL---IQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI--------VG  147 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~  147 (350)
                      ++|+.|+.|++||+.+++.   ...+.  |...|.+++|+|++.+|++++.||.|++||+..........        ..
T Consensus       116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  195 (377)
T 3dwl_C          116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF  195 (377)
T ss_dssp             EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred             EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence            9999999999999998863   44443  88999999999999999999999999999986433221100        01


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceE----EEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVS----IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ......+ +|...|++++|+|++  |++++.||.|++||+++++.    +..+..|..+|.+++|+|++++|++++.+..
T Consensus       196 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          196 NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred             hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence            2233345 899999999999998  99999999999999999876    7788889999999999999999997765544


Q ss_pred             c
Q 045370          222 K  222 (350)
Q Consensus       222 ~  222 (350)
                      +
T Consensus       275 ~  275 (377)
T 3dwl_C          275 I  275 (377)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.4e-27  Score=203.50  Aligned_cols=190  Identities=20%  Similarity=0.291  Sum_probs=157.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.||.|++||+.                           .......+.+|...|.++.|++ ++.++
T Consensus        71 ~~~~~~~~~l~s~~~d~~i~vwd~~---------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~l  122 (312)
T 4ery_A           71 VAWSSDSNLLVSASDDKTLKIWDVS---------------------------SGKCLKTLKGHSNYVFCCNFNP-QSNLI  122 (312)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCSSCEEEEEECS-SSSEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEECC---------------------------CCcEEEEEcCCCCCEEEEEEcC-CCCEE
Confidence            5799999999999999999999998                           4566777889999999999966 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.|+.|++||+.+++.+..+. |..+|.+++|+|++.+|++++.||.|++||++++....         .....+..
T Consensus       123 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---------~~~~~~~~  193 (312)
T 4ery_A          123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK---------TLIDDDNP  193 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---------EECCSSCC
T ss_pred             EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee---------EEeccCCC
Confidence            999999999999999998887764 78899999999999999999999999999998543221         12235667


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeE--EEEE-ccCCeEEeeecCccccccccC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN--LVVI-RQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--l~~~-~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .+.+++|+|++  |++++.||.|++||+++++.+..+.+|......  ..++ +++.+|++++.|+ .+.+|+.
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~i~vwd~  266 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN-LVYIWNL  266 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS-CEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC-EEEEEEC
Confidence            89999999998  999999999999999999999999887665433  3444 5678888777664 3344444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=3.3e-28  Score=224.68  Aligned_cols=212  Identities=26%  Similarity=0.345  Sum_probs=175.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||..                            ...+..+.+|...|.+++|++ ++.+|
T Consensus       350 ~~~s~~g~~l~~~~~dg~v~~~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~-dg~~l  400 (577)
T 2ymu_A          350 VAFSPDGQTIASASDDKTVKLWNRN----------------------------GQLLQTLTGHSSSVRGVAFSP-DGQTI  400 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETT----------------------------CCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEcCC----------------------------CCEEEEecCCCCCeEEEEECC-CCCEE
Confidence            4799999999999999999999976                            456667788999999999965 77889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.|+.|++||.. ++.+.. ..|...|.+++|+|++++|++++.|+.|++||..           ......+.+|..
T Consensus       401 ~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-----------~~~~~~~~~~~~  468 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-----------GQLLQTLTGHSS  468 (577)
T ss_dssp             EEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------SCEEEEEECCSS
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-----------CCEEEEEcCCCC
Confidence            999999999999965 555554 4588999999999999999999999999999965           233447789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCccccCCCC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYPQL  237 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  237 (350)
                      .|++++|+|++  |++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+ .+++|+...  .    
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~lwd~~~--~----  540 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNG--Q----  540 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEEECTTS--C----
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEEEeCCC--C----
Confidence            99999999998  999999999999995 6788999999999999999999999999887765 344554311  0    


Q ss_pred             ccccccceEEeeccccCCCCcccccccccchhh
Q 045370          238 NSLSMEMVILLQSCFFNKDDQCSINIRRTKSLF  270 (350)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (350)
                               .+..+.+|...+..+.|++++.++
T Consensus       541 ---------~~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          541 ---------LLQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             ---------EEEEEECCSSCEEEEEECTTSSCE
T ss_pred             ---------EEEEEcCCCCCEEEEEEcCCCCEE
Confidence                     122334666677777777777654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=3.4e-28  Score=226.05  Aligned_cols=179  Identities=16%  Similarity=0.199  Sum_probs=155.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|||||++|++++ ++.|++|++.                           .......+.+|...|.+++|+| ++.+|
T Consensus        24 ~~~spdg~~l~~~~-~~~v~l~~~~---------------------------~~~~~~~~~~h~~~v~~~~~sp-dg~~l   74 (611)
T 1nr0_A           24 LGNTPAGDKIQYCN-GTSVYTVPVG---------------------------SLTDTEIYTEHSHQTTVAKTSP-SGYYC   74 (611)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETT---------------------------CSSCCEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EeeCCCCCEEEeCC-CCEEEEecCC---------------------------CcccCeEecCCCCceEEEEECC-CCcEE
Confidence            68999999999998 5799999997                           3566777889999999999965 78999


Q ss_pred             EEEeCCCcEEEEeCCCCce--EEE-EecCCceeEEEEcCCCcEEEEEccC----CeEEEEeCCcccccccccccccccee
Q 045370           81 VSSSLDATCKVWDLGSGIL--IQT-QVYPQAVTAIAFHPGEQLLFAGSID----GRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++|+.|++|++||+.+++.  ... ..|.++|.+++|+|++++|++++.+    +.|++||...            ....
T Consensus        75 asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~------------~~~~  142 (611)
T 1nr0_A           75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT------------SNGN  142 (611)
T ss_dssp             EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC------------BCBC
T ss_pred             EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC------------Ccce
Confidence            9999999999999976543  333 3488999999999999999988765    4788888532            2236


Q ss_pred             eeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          154 LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +.+|...|++++|+|++   |++|+.|++|++||..+++.+..+.+|...|.+++|+|++++|++++.|+
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence            77999999999999986   99999999999999999999999999999999999999999999888775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-28  Score=223.13  Aligned_cols=193  Identities=12%  Similarity=0.045  Sum_probs=152.5

Q ss_pred             CeecCC------CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            1 MVFSDD------GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~d------g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      |+|+|+      +.+||+|+.||+|+|||+.........           ..     ....+...+.+|...|.+++|++
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-----------~~-----~~~~p~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-----------FK-----MCEKPSLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-----------EE-----CCCSCSEEECCTTTCEEEEEESS
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-----------ce-----eecCceEEEEcCCCCEEEEEecC
Confidence            468886      679999999999999999742111000           00     01123345678999999999976


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCc-eEEE-EecCCceeEE--EEcCCC-cEEEEEccCCeEEEEeCCccccccccccccc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGI-LIQT-QVYPQAVTAI--AFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~-~~~~-~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      +  ..|++|+.||+|++||++++. +... ..|...|.++  .|+|++ .+|++|+.|++|++||++++...        
T Consensus       277 ~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~--------  346 (524)
T 2j04_B          277 P--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT--------  346 (524)
T ss_dssp             S--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH--------
T ss_pred             C--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc--------
Confidence            3  479999999999999999764 3333 4588999999  567887 89999999999999999864432        


Q ss_pred             cceeeeccCC--ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          150 QHSVLKGHNG--SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       150 ~~~~~~~~~~--~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                        ..+.+|..  .|.+++|+|++  +++++.|++|++||++++.++..+.+|.+.|++|+|+|++++|++|+.|+.
T Consensus       347 --~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          347 --KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             --CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred             --cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence              24445543  58899999987  999999999999999999888888899999999999999999998887753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.6e-28  Score=213.20  Aligned_cols=200  Identities=20%  Similarity=0.319  Sum_probs=162.4

Q ss_pred             CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+ +++|++|+.||.|++||+.+........                  ..........|...|.+++|++.++.+
T Consensus       119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~  180 (416)
T 2pm9_A          119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------------TPLTPGQSMSSVDEVISLAWNQSLAHV  180 (416)
T ss_dssp             EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC------------------CCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred             EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc------------------cccccccccCCCCCeeEEEeCCCCCcE
Confidence            579998 8999999999999999998421000000                  001122346799999999998865789


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEec-------CCceeEEEEcCCC-cEEEEEccCC---eEEEEeCCcccccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVY-------PQAVTAIAFHPGE-QLLFAGSIDG---RIFVSPLKFLLLEDHFIVGE  148 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~  148 (350)
                      +++++.|+.|++||+.+++.+..+..       ...+.+++|+|++ .++++++.|+   .|++||++..         .
T Consensus       181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~---------~  251 (416)
T 2pm9_A          181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA---------N  251 (416)
T ss_dssp             EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST---------T
T ss_pred             EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC---------C
Confidence            99999999999999999998887653       6789999999997 6899999998   9999999853         2


Q ss_pred             ccceeee-ccCCceEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccC-CeEEeeecCcccc
Q 045370          149 DQHSVLK-GHNGSITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS-SLLSEVSNCQRKL  223 (350)
Q Consensus       149 ~~~~~~~-~~~~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~~~~~~  223 (350)
                      .....+. +|...|++++|+| ++  |++++.||.|++||+++++.+..+..|...|.+++|+|++ .+|++++.++ .+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-~i  330 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN-KI  330 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS-EE
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC-cE
Confidence            3344666 8999999999999 66  9999999999999999999999999999999999999999 7888777664 33


Q ss_pred             ccccC
Q 045370          224 KKDRM  228 (350)
Q Consensus       224 ~~~~~  228 (350)
                      .+|++
T Consensus       331 ~iw~~  335 (416)
T 2pm9_A          331 EVQTL  335 (416)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            34433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.3e-27  Score=211.05  Aligned_cols=224  Identities=18%  Similarity=0.191  Sum_probs=173.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||+.                           .......+.+|...|.++.|   ++.++
T Consensus       140 v~~s~~~~~l~~~~~dg~i~iwd~~---------------------------~~~~~~~~~~~~~~v~~~~~---~~~~l  189 (401)
T 4aez_A          140 VKWSHDGSFLSVGLGNGLVDIYDVE---------------------------SQTKLRTMAGHQARVGCLSW---NRHVL  189 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TCCEEEEECCCSSCEEEEEE---ETTEE
T ss_pred             EEECCCCCEEEEECCCCeEEEEECc---------------------------CCeEEEEecCCCCceEEEEE---CCCEE
Confidence            5799999999999999999999998                           46667778899999999999   34689


Q ss_pred             EEEeCCCcEEEEeCCC-CceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGS-GILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++|+.||.|++||++. +..... ..|...|.+++|+|++.+|++|+.||.|++||++.          ......+..|.
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~  259 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS----------SIPKFTKTNHN  259 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC----------SSEEEEECCCS
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC----------CCccEEecCCc
Confidence            9999999999999984 444444 45889999999999999999999999999999984          33444677899


Q ss_pred             CceEEEEecCCe---EEEEe--CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec-CccccccccCCc--
Q 045370          159 GSITALAFSASH---LISAS--EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN-CQRKLKKDRMPS--  230 (350)
Q Consensus       159 ~~i~~~~~~~~~---l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~--  230 (350)
                      ..|.+++|+|++   +++|+  .|+.|++||+++++.+..+. +...|.+++|+|++++++++++ .+..+.+|++..  
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~  338 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG  338 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence            999999999977   66654  79999999999999999887 6688999999999999998542 334444443322  


Q ss_pred             ---------cccCCCCccccccceEEeeccccCCCCcccccccccch
Q 045370          231 ---------LEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKS  268 (350)
Q Consensus       231 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (350)
                               ....+....+++++..++   .+..++.+.+|...++.
T Consensus       339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~---s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          339 LTKQVDIPAHDTRVLYSALSPDGRILS---TAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEEEEEECCSSCCCEEEECTTSSEEE---EECTTSEEEEEECCC--
T ss_pred             ceeEEEecCCCCCEEEEEECCCCCEEE---EEeCCCcEEEEECCCCc
Confidence                     112233334455554444   23346666666555544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=6.7e-28  Score=227.45  Aligned_cols=190  Identities=22%  Similarity=0.260  Sum_probs=159.5

Q ss_pred             CeecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|++ ++|+||+.||+|++||+.....                      ........+.+|...|.+++|++ ++.+
T Consensus       388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~v~~s~-~g~~  444 (694)
T 3dm0_A          388 IATPIDNADIIVSASRDKSIILWKLTKDDK----------------------AYGVAQRRLTGHSHFVEDVVLSS-DGQF  444 (694)
T ss_dssp             EECCTTCCSEEEEEETTSEEEEEECCCSTT----------------------CSCEEEEEEECCSSCEEEEEECT-TSSE
T ss_pred             EEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------------ccccccceecCCCCcEEEEEECC-CCCE
Confidence            4688865 7999999999999999873110                      01233456789999999999966 7789


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |++|+.|++|++||+.++.....+ .|...|.+++|+|++++|++++.|+.|++||........       ......+|.
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-------~~~~~~~h~  517 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-------ISEGGEGHR  517 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-------ECSSTTSCS
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-------eccCCCCCC
Confidence            999999999999999999888775 589999999999999999999999999999976321110       011234788


Q ss_pred             CceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..|.+++|+|++    +++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++++.|+
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg  583 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG  583 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            999999999975    99999999999999999999999999999999999999999999888764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=1.3e-28  Score=218.51  Aligned_cols=182  Identities=20%  Similarity=0.196  Sum_probs=151.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||+.+                           ......+..|  .+..+.++++++.+|
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~---------------------------~~~~~~~~~~--~~~~~~~~~~~~~~l  112 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTII---------------------------RDGSKMLKRA--DYTAVDTAKLQMRRF  112 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCS---------------------------EETTTTSCSC--CEEEEEEECSSSCEE
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecc---------------------------cceeeEEecC--CceEEEEEecCCCEE
Confidence            57999999999999999999999983                           3333333334  566666667788999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.||.|++||+.++.....+ .|...|.+++|+|++++|++++.||.|++||+..+          .....+.+|..
T Consensus       113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~  182 (420)
T 3vl1_A          113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----------SNPRTLIGHRA  182 (420)
T ss_dssp             EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----------CCCEEEECCSS
T ss_pred             EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------cCceEEcCCCC
Confidence            99999999999999999888775 69999999999999999999999999999999843          34457789999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc---CC---------------------CceeEEEEEccCCeE
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH---KK---------------------GVVTNLVVIRQSSLL  213 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~---~~---------------------~~v~~l~~~~~~~~l  213 (350)
                      .|++++|+|++  |++++.||.|++||+++++.+..+..   +.                     ..+.+++|+|++++|
T Consensus       183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence            99999999998  99999999999999999999988864   33                     344445557888899


Q ss_pred             EeeecCcc
Q 045370          214 SEVSNCQR  221 (350)
Q Consensus       214 ~~~~~~~~  221 (350)
                      ++++.++.
T Consensus       263 ~~~~~dg~  270 (420)
T 3vl1_A          263 IAGHVSGV  270 (420)
T ss_dssp             EEEETTSC
T ss_pred             EEEcCCCe
Confidence            98877653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=2.1e-28  Score=212.80  Aligned_cols=200  Identities=12%  Similarity=0.152  Sum_probs=165.0

Q ss_pred             CeecCC----CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            1 MVFSDD----GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~d----g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      ++|+|+    |.+|++|+.||.|++||+.                           .......+.+|...|.+++|++.+
T Consensus        75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~---------------------------~~~~~~~~~~~~~~i~~~~~~~~~  127 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAGSRGIIRIINPI---------------------------TMQCIKHYVGHGNAINELKFHPRD  127 (366)
T ss_dssp             EEEEECTTTCCEEEEEEETTCEEEEECTT---------------------------TCCEEEEEESCCSCEEEEEECSSC
T ss_pred             EEeccCCCCCCCEEEEecCCCEEEEEEch---------------------------hceEeeeecCCCCcEEEEEECCCC
Confidence            468888    6799999999999999998                           456677778899999999997757


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc------
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV------  146 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------  146 (350)
                      +.+|++|+.||.|++||+.+++.+..+    .|...|.+++|+|++.+|++++.||.|++||++.+........      
T Consensus       128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (366)
T 3k26_A          128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP  207 (366)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred             CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence            889999999999999999999988886    5889999999999999999999999999999987653321110      


Q ss_pred             ------------ccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCc--------------eEEEEeccCCCc
Q 045370          147 ------------GEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRR--------------VSIRRFNHKKGV  200 (350)
Q Consensus       147 ------------~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~  200 (350)
                                  ..........|...|.+++|+++.+++++.||.|++||++++              ..+..+..|...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence                        011122334599999999999666999999999999999876              347788889999


Q ss_pred             eeEEEEEcc--CCeEEeeecCccccccccC
Q 045370          201 VTNLVVIRQ--SSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       201 v~~l~~~~~--~~~l~~~~~~~~~~~~~~~  228 (350)
                      |.+++|+|+  +++|++++.++ .+.+|++
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg-~i~vwd~  316 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVG-KLYVWDL  316 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTS-CEEEEEC
T ss_pred             EEEEEEcCCCCCcEEEEEecCC-cEEEEEC
Confidence            999999999  99999887665 3334443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1.5e-27  Score=207.99  Aligned_cols=186  Identities=16%  Similarity=0.122  Sum_probs=159.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc--ceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS--LLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|+|++|++|+.||.|++||+.                           ...  ....+.+|...|.+++|++ ++.
T Consensus        14 ~~~s~~~~~l~~~~~d~~v~i~~~~---------------------------~~~~~~~~~~~~h~~~v~~~~~~~-~~~   65 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNNHEVHIYEKS---------------------------GNKWVQVHELKEHNGQVTGVDWAP-DSN   65 (372)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEE---------------------------TTEEEEEEEEECCSSCEEEEEEET-TTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCC---------------------------CCcEEeeeeecCCCCcccEEEEeC-CCC
Confidence            5799999999999999999999998                           233  5667789999999999976 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++++++.||.|++||+.+++....   ..|...|.+++|+|++++|++++.||.|++||++......      .......
T Consensus        66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~~~~  139 (372)
T 1k8k_C           66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW------VCKHIKK  139 (372)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE------EEEEECT
T ss_pred             EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce------eeeeeec
Confidence            999999999999999998875544   3478899999999999999999999999999998543110      0111335


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEEC------------------CCceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDV------------------TRRVSIRRFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                      .|...|.+++|+|++  |++++.||.|++||+                  ..++.+..+..|...|.+++|+|++++|++
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence            688999999999998  999999999999995                  467889999889999999999999999998


Q ss_pred             eecCc
Q 045370          216 VSNCQ  220 (350)
Q Consensus       216 ~~~~~  220 (350)
                      ++.++
T Consensus       220 ~~~d~  224 (372)
T 1k8k_C          220 VSHDS  224 (372)
T ss_dssp             EETTT
T ss_pred             EeCCC
Confidence            88775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=205.67  Aligned_cols=196  Identities=13%  Similarity=0.144  Sum_probs=157.0

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc----CCceEEEE---ee
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK----SSVTGLLT---IS   74 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~---~~   74 (350)
                      +|+|++++|++|+.||.|++||+...                          ......+..|.    ..+.+++|   ++
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~--------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQK--------------------------DDPVANMEPVQGENKRDCWTVAFGNAYN  177 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSC--------------------------SSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCC--------------------------CCcceeccccCCCCCCceEEEEEEeccC
Confidence            68999999999999999999999831                          11344444443    37888885   34


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcC---CCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP---GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +++.++++++.||.|++||+++++......+...|.+++|+|   ++.++++++.||.|++||++.........     .
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~  252 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA-----S  252 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE-----E
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee-----e
Confidence            678899999999999999999999888888999999999999   99999999999999999998654332111     1


Q ss_pred             eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc-------------------eEEEEeccCCCceeEEEEEcc
Q 045370          152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR-------------------VSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~v~~l~~~~~  209 (350)
                      ..+.+|...|++++|+|++   +++++.||.|++||++++                   +.+..+..|..+|++++|+|+
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence            1344899999999999987   899999999999999753                   567778889999999999999


Q ss_pred             CCeEE-eeecCccccccccCC
Q 045370          210 SSLLS-EVSNCQRKLKKDRMP  229 (350)
Q Consensus       210 ~~~l~-~~~~~~~~~~~~~~~  229 (350)
                      +++|+ +++.| ..+.+|++.
T Consensus       333 ~~~l~~s~~~d-~~i~iw~~~  352 (357)
T 3i2n_A          333 KRGLCVCSSFD-QTVRVLIVT  352 (357)
T ss_dssp             STTEEEEEETT-SEEEEEEEC
T ss_pred             CCeEEEEecCC-CcEEEEECC
Confidence            99998 45554 444455443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=3.8e-27  Score=202.48  Aligned_cols=184  Identities=17%  Similarity=0.260  Sum_probs=154.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee--ccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS--LEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|++++|++++ ||.|++||+.+..                        .......+  ..|...|.+++|++ ++.
T Consensus        57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~------------------------~~~~~~~~~~~~~~~~v~~~~~~~-~~~  110 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KGCVKVWDISHPG------------------------NKSPVSQLDCLNRDNYIRSCKLLP-DGC  110 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTT------------------------CCSCSEEEECSCTTSBEEEEEECT-TSS
T ss_pred             EEEecCCcEEEEcC-CCeEEEEECCCCC------------------------ceeeeecccccCCCCcEEEEEEcC-CCC
Confidence            57999999999999 9999999998311                        01112222  37899999999976 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCc--eEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGI--LIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++++++.|+.|++||+.+++  .... ..|...+.+++|+|+++++++++.||.|++||++++          .....+.
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----------~~~~~~~  180 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------TLVRQFQ  180 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------EEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------ceeeeee
Confidence            89999999999999999887  3333 347788999999999999999999999999999853          3344677


Q ss_pred             ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          156 GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      .|...|.+++|+|++  +++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.++.
T Consensus       181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCc
Confidence            899999999999998  9999999999999999999988876 6788999999999999998877653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=4.8e-27  Score=202.33  Aligned_cols=189  Identities=20%  Similarity=0.254  Sum_probs=160.4

Q ss_pred             CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|+ +++|+|||.||+|+|||+.+...                      ....+...+.+|...|.+++|++ ++.+
T Consensus        44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------------~~~~~~~~l~~h~~~V~~~~~s~-dg~~  100 (340)
T 4aow_A           44 IATTPQFPDMILSASRDKTIIMWKLTRDET----------------------NYGIPQRALRGHSHFVSDVVISS-DGQF  100 (340)
T ss_dssp             EEECTTCTTEEEEEETTSCEEEEEECCSSS----------------------CSEEEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             EEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------------ccceeeEEEeCCCCCEEEEEECC-CCCE
Confidence            589998 68999999999999999873110                      01234566789999999999965 7889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++|+.|+.|++|+.......... .+...+..+.+++++.+|++++.|+.+++||+....         .......+|.
T Consensus       101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---------~~~~~~~~~~  171 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---------KYTVQDESHS  171 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---------EEEECSSSCS
T ss_pred             EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---------eEEEEecccc
Confidence            999999999999999988777664 466788899999999999999999999999987432         2223456789


Q ss_pred             CceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          159 GSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       159 ~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ..+.+++|+++.    +++++.|+.|++||+++++.+..+.+|.++|++++|+|++++|++++.|+.
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            999999999875    789999999999999999999999999999999999999999998887753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=1e-26  Score=199.87  Aligned_cols=181  Identities=19%  Similarity=0.280  Sum_probs=162.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++++.||.|++||+.                           .......+..|...|.+++|++ ++.++
T Consensus       147 ~~~~~~~~~l~~~~~dg~v~~~d~~---------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~l  198 (337)
T 1gxr_A          147 LAISPDSKVCFSCCSDGNIAVWDLH---------------------------NQTLVRQFQGHTDGASCIDISN-DGTKL  198 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCC---------------------------CCceeeeeecccCceEEEEECC-CCCEE
Confidence            4799999999999999999999998                           4566667788999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ++++.|+.|++||+.+++.+..+.+...+.+++|+|++.++++++.||.|++||++...           ...+..|...
T Consensus       199 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~  267 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----------KYQLHLHESC  267 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----------EEEECCCSSC
T ss_pred             EEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-----------eEEEcCCccc
Confidence            99999999999999999999989999999999999999999999999999999998543           2256789999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      |.+++|+|++  |++++.||.|++||+.+++.+.... |...+.+++|+|++++|++++.++.
T Consensus       268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCe
Confidence            9999999998  9999999999999999998886654 7889999999999999998887753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.5e-27  Score=212.58  Aligned_cols=205  Identities=17%  Similarity=0.215  Sum_probs=160.1

Q ss_pred             CeecCC-CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDD-GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~d-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|+ +.+|++|+.||.|++||+........                 ..........+.+|...|.+++|++.+..+
T Consensus       134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             EEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            578997 68999999999999999983111000                 000134566778999999999998755559


Q ss_pred             EEEEeCCCcEEEEeCCCCce-------EEE-EecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccccccccccccc
Q 045370           80 FVSSSLDATCKVWDLGSGIL-------IQT-QVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~-------~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      |++|+.||.|++||+..+..       ... ..|...|.+++|+| ++.+|++++.||.|++||++...       ....
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-------~~~~  269 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------TSKP  269 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-------SSSC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-------CCcc
Confidence            99999999999999987321       222 35888999999999 77899999999999999999542       1234


Q ss_pred             ceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCe-EEeeecCcccccc
Q 045370          151 HSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSL-LSEVSNCQRKLKK  225 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~~~~~~~~  225 (350)
                      ...+..|...|++++|+|++   +++|+.||.|++||+++ ..++..+..|...|.+++|+|+++. |++++.+ ..+.+
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-~~i~i  348 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHV  348 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-SCCEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC-CcEEE
Confidence            44677899999999999987   88999999999999998 5678888889999999999999964 6656555 34445


Q ss_pred             ccCCc
Q 045370          226 DRMPS  230 (350)
Q Consensus       226 ~~~~~  230 (350)
                      |++..
T Consensus       349 wd~~~  353 (430)
T 2xyi_A          349 WDLSK  353 (430)
T ss_dssp             EEGGG
T ss_pred             EeCCC
Confidence            54433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-27  Score=224.37  Aligned_cols=228  Identities=18%  Similarity=0.199  Sum_probs=177.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-CcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-TTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~   79 (350)
                      ++|+|+|++|++|+.||.|+|||+...                         .......+.+|.++|.+++|+++. +.+
T Consensus        15 l~~s~dg~~latg~~dg~I~vwd~~~~-------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~   69 (753)
T 3jro_A           15 AVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------THKLIDTLTGHEGPVWRVDWAHPKFGTI   69 (753)
T ss_dssp             ECCCSSSCCEEEEETTTEEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCTTSCSE
T ss_pred             EEECCCCCeEEEEECCCcEEEEecCCC-------------------------CCccceeccCCcCceEEEEecCCCCCCE
Confidence            579999999999999999999998721                         234566778999999999997642 789


Q ss_pred             EEEEeCCCcEEEEeCCCCc--eEEE-EecCCceeEEEEcCC--CcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           80 FVSSSLDATCKVWDLGSGI--LIQT-QVYPQAVTAIAFHPG--EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~--~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +++|+.||.|++||+.++.  .... ..|...|.+++|+|+  +..+++|+.||.|++||++....        .....+
T Consensus        70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------~~~~~~  141 (753)
T 3jro_A           70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIII  141 (753)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--------CCCEEE
T ss_pred             EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--------cceeEe
Confidence            9999999999999999986  3333 348899999999999  99999999999999999986422        223356


Q ss_pred             eccCCceEEEEecCC-------------e--EEEEeCCCcEEEEECCCc----eEEEEeccCCCceeEEEEEcc---CCe
Q 045370          155 KGHNGSITALAFSAS-------------H--LISASEDKTVCLWDVTRR----VSIRRFNHKKGVVTNLVVIRQ---SSL  212 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~-------------~--l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~---~~~  212 (350)
                      .+|...|.+++|+|.             +  +++|+.||.|++||++++    ..+..+.+|.++|++++|+|+   +.+
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~  221 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  221 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence            789999999999993             5  999999999999999876    667788899999999999999   899


Q ss_pred             EEeeecCccccccccCCc--------------cccCCCCccccccceEEeeccccCCCCcccccccc
Q 045370          213 LSEVSNCQRKLKKDRMPS--------------LEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRR  265 (350)
Q Consensus       213 l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  265 (350)
                      |++++.++.+ .+|+...              ....+....+++++..++   .+..+|.+.++...
T Consensus       222 l~s~s~Dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~---s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          222 LASVSQDRTC-IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA---LSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEESSSCE-EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE---EECSSSCEECCBCC
T ss_pred             EEEEecCCEE-EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE---EEcCCCEEEEEecC
Confidence            9988877532 2332221              122233445555555544   23346777666544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.9e-27  Score=206.54  Aligned_cols=188  Identities=18%  Similarity=0.273  Sum_probs=158.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||..                            ......+..|...|.+++|++ ++.+|
T Consensus       114 ~~~s~~~~~l~~~~~dg~i~i~~~~----------------------------~~~~~~~~~~~~~v~~~~~~~-~~~~l  164 (425)
T 1r5m_A          114 LAWSHDGNSIVTGVENGELRLWNKT----------------------------GALLNVLNFHRAPIVSVKWNK-DGTHI  164 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT----------------------------SCEEEEECCCCSCEEEEEECT-TSSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC----------------------------CCeeeeccCCCccEEEEEECC-CCCEE
Confidence            5799999999999999999999954                            555666778888888888865 66788


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE---------------------------------------------------------
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ---------------------------------------------------------  103 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~---------------------------------------------------------  103 (350)
                      ++++.|+.|++||+.+++.+..+                                                         
T Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  244 (425)
T 1r5m_A          165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI  244 (425)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred             EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence            88888888999988776544321                                                         


Q ss_pred             ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEE
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCL  182 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~i  182 (350)
                      .|...|.+++|+|++++|++++.||.|++||++..          .....+..|...|.+++|+|++ +++++.|+.|++
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i  314 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRL  314 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB----------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEE
Confidence            25567899999999999999999999999999843          3444677899999999999998 999999999999


Q ss_pred             EECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          183 WDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       183 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ||+++++.+..+..|..+|.+++|+|++++|++++.++ .+.+|++
T Consensus       315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~~~  359 (425)
T 1r5m_A          315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG-QVNVYDL  359 (425)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS-CEEEEEC
T ss_pred             EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC-eEEEEEC
Confidence            99999999999999999999999999999999888764 3334433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.1e-26  Score=206.29  Aligned_cols=215  Identities=16%  Similarity=0.219  Sum_probs=163.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc--------------cccccccEEEeeccccccceeeeccccCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH--------------SDQLDQRLIEMELRSLRSLLHYSLEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~   66 (350)
                      |+|+|||++||+|+.||+|+|||+.+.........+.              +...++.+...+.......+..+.+|...
T Consensus       153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence            5899999999999999999999998654332221111              11223344444444445566778899999


Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce-----EEEEecCCceeEEEEcCCCc-EEEE--EccCCeEEEEeCCcc
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL-----IQTQVYPQAVTAIAFHPGEQ-LLFA--GSIDGRIFVSPLKFL  138 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~  138 (350)
                      +..+.+.+ ++.++++++.|+.|++|+..+++.     .....|...|.+++|+|.+. .+++  |+.|+.|++||+.++
T Consensus       233 ~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          233 VCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            99998865 778999999999999999987653     22345888999999999654 5544  457999999999865


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEe--CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS--EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                      ...          ..+. +...+.++.|+|++  +++++  .|+.|+|||+.+++++.++.+|.+.|++++|+|+|++|+
T Consensus       312 ~~~----------~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          312 ACL----------SAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EEE----------EEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             ccc----------eeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            432          2333 34578899999988  55543  799999999999999999999999999999999999999


Q ss_pred             eeecCc--ccccccc
Q 045370          215 EVSNCQ--RKLKKDR  227 (350)
Q Consensus       215 ~~~~~~--~~~~~~~  227 (350)
                      +++.|+  ++|++..
T Consensus       381 S~s~D~tvriWdv~~  395 (420)
T 4gga_A          381 SAAADETLRLWRCFE  395 (420)
T ss_dssp             EEETTTEEEEECCSC
T ss_pred             EEecCCeEEEEECCC
Confidence            888774  4444443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=3.3e-27  Score=207.05  Aligned_cols=197  Identities=16%  Similarity=0.141  Sum_probs=157.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.||.|++||+.                            ...+..+.+|...|.+++|++.+..++
T Consensus       169 ~~~~~~~~~l~~~~~d~~i~i~d~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          169 VDVSVSRQMLATGDSTGRLLLLGLD----------------------------GHEIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETT----------------------------SCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             EEECCCCCEEEEECCCCCEEEEECC----------------------------CCEEEEeccCCCcEEEEEECCCCCCEE
Confidence            4799999999999999999999986                            455667788999999999987544499


Q ss_pred             EEEeCCCcEEEEeCCC----CceEEEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccccccccccc-------
Q 045370           81 VSSSLDATCKVWDLGS----GILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE-------  148 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------  148 (350)
                      ++|+.|+.|++||+.+    +.++..+.|...|.+++|+| ++.+|++++.|+.|++||++++..........       
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL  300 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence            9999999999999998    67777788999999999999 99999999999999999999765433211110       


Q ss_pred             ccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          149 DQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ..+...-.....+..++++|++ + +|+.||.|++||+.+++.+..+..  |.+.+..++|+|++++|++++ | ..+.+
T Consensus       301 ~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d-~~i~i  377 (383)
T 3ei3_B          301 TPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G-FNILI  377 (383)
T ss_dssp             CCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T-TEEEE
T ss_pred             cceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C-CcEEE
Confidence            0000001112455667778877 7 888999999999999999999976  457788889999999999886 4 44555


Q ss_pred             ccC
Q 045370          226 DRM  228 (350)
Q Consensus       226 ~~~  228 (350)
                      |++
T Consensus       378 w~~  380 (383)
T 3ei3_B          378 WNR  380 (383)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.3e-27  Score=208.49  Aligned_cols=199  Identities=17%  Similarity=0.233  Sum_probs=159.2

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+| ++++|++|+.||+|+|||+.+.....                    ........+.+|...|.+++|++.+..+
T Consensus        87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------------PLREPVITLEGHTKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEECCTTCCSS--------------------CBCSCSEEEECCSSCEEEEEECSSBTTE
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--------------------ccCCceEEecCCCCeEEEEEECcCCCCE
Confidence            57999 99999999999999999998321100                    0114566778999999999998755579


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee-e
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL-K  155 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~  155 (350)
                      |++|+.|+.|++||+.+++.+..+   .|...|.+++|+|++.+|++++.||.|++||++.+.          ....+ .
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~~~~  216 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT----------VVAEKDR  216 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----------EEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc----------eeeeecc
Confidence            999999999999999999988887   388899999999999999999999999999998543          33345 5


Q ss_pred             ccCCc-eEEEEecCCe--EEEE---eCCCcEEEEECCCceE-EEEec-cCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370          156 GHNGS-ITALAFSASH--LISA---SEDKTVCLWDVTRRVS-IRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       156 ~~~~~-i~~~~~~~~~--l~s~---~~dg~v~iwd~~~~~~-~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      .|.+. +.++.|+|++  +++|   +.|+.|++||++++.. +.... .|...+.+++|+|++++|++++..+..+.+|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d  296 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE  296 (402)
T ss_dssp             SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred             CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence            67665 8999999999  7777   6899999999998654 32222 46778999999999999986665444555554


Q ss_pred             CC
Q 045370          228 MP  229 (350)
Q Consensus       228 ~~  229 (350)
                      +.
T Consensus       297 ~~  298 (402)
T 2aq5_A          297 IT  298 (402)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-27  Score=227.62  Aligned_cols=189  Identities=14%  Similarity=0.155  Sum_probs=157.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++||+|+.||+|+||+...                           ... .....|...|.+++|++  +.+|
T Consensus        23 lafspdg~~lAsgs~Dg~I~lw~~~~---------------------------~~~-~~~~~~~~~V~~l~fsp--g~~L   72 (902)
T 2oaj_A           23 AAFDFTQNLLAIATVTGEVHIYGQQQ---------------------------VEV-VIKLEDRSAIKEMRFVK--GIYL   72 (902)
T ss_dssp             EEEETTTTEEEEEETTSEEEEECSTT---------------------------CEE-EEECSSCCCEEEEEEET--TTEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCC---------------------------cEE-EEEcCCCCCEEEEEEcC--CCEE
Confidence            58999999999999999999999872                           222 22345788999999987  5589


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc-eeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (350)
                      ++++.|++|++||+.+++.+..+.+...|++++|+|+++++++|+.||.|++||++............... ..+.+|.+
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence            99999999999999999999888888999999999999999999999999999998765321000000000 24467999


Q ss_pred             ceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccC------------------CCceeEEEEEccCCeEEeeec
Q 045370          160 SITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHK------------------KGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       160 ~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .|++++|+|++   +++|+.||.| +||+++++.+..+..|                  ...|.+++|+|+|++|++++.
T Consensus       153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence            99999999963   9999999999 9999999998888755                  467999999999999998887


Q ss_pred             Cc
Q 045370          219 CQ  220 (350)
Q Consensus       219 ~~  220 (350)
                      |+
T Consensus       232 Dg  233 (902)
T 2oaj_A          232 DN  233 (902)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.4e-26  Score=204.26  Aligned_cols=197  Identities=25%  Similarity=0.323  Sum_probs=157.8

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+| ++++|++|+.||.|++||+.+...........            .  .........+|...|.+++|++.++.+
T Consensus        49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA------------V--CSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE------------E--EEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc------------c--ccccccccccCCCcEEEEEEccCCCcE
Confidence            57999 99999999999999999998422111000000            0  000001123699999999998867789


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCC---CcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG---EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +++++.||.|++||+.+++....+.+...+.++.|+|.   +.++++++.||.|++||++.+          .....+.+
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----------~~~~~~~~  184 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----------SCSHILQG  184 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------CCCEEECC
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------ceeeeecC
Confidence            99999999999999999999999999999999999984   449999999999999999853          34457778


Q ss_pred             cCCceEEEEecCCe---EEEEeCCCcEEEEECCCce-EEEEe---------------ccCCCceeEEEEEccCCeEEeee
Q 045370          157 HNGSITALAFSASH---LISASEDKTVCLWDVTRRV-SIRRF---------------NHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       157 ~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      |...|++++|+|++   +++|+.||.|++||++++. .+..+               ..|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            99999999999987   7899999999999998765 34443               46888999999999999999888


Q ss_pred             cCcc
Q 045370          218 NCQR  221 (350)
Q Consensus       218 ~~~~  221 (350)
                      .++.
T Consensus       265 ~dg~  268 (408)
T 4a11_B          265 TDNR  268 (408)
T ss_dssp             TTSC
T ss_pred             CCCe
Confidence            7753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.6e-27  Score=210.15  Aligned_cols=199  Identities=18%  Similarity=0.136  Sum_probs=158.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|+|++++|++|+.||.|++||+.                           .......+.+|...|.+++|++ ++.+|+
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  155 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSN---------------------------FNLQREIDQAHVSEITKLKFFP-SGEALI  155 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTT---------------------------SCEEEEETTSSSSCEEEEEECT-TSSEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCC---------------------------CcceeeecccccCccEEEEECC-CCCEEE
Confidence            589999999999999999999998                           4555666679999999999976 678999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc---ccce-----
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE---DQHS-----  152 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~-----  152 (350)
                      +|+.|+.|++||+.+++.+..+. |...|.+++|+|++.+|++++.||.|++||++++..........   ..+.     
T Consensus       156 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            99999999999999998887765 88999999999999999999999999999998665432211100   0000     


Q ss_pred             ------eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCC-eEEeeecCccc
Q 045370          153 ------VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSS-LLSEVSNCQRK  222 (350)
Q Consensus       153 ------~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~-~l~~~~~~~~~  222 (350)
                            ....+...+.+++|+|++  +++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.++ .
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~  314 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG-M  314 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS-E
T ss_pred             cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC-e
Confidence                  011133555666678888  9999999999999999998877775 5788999999999999 888777664 3


Q ss_pred             cccccCC
Q 045370          223 LKKDRMP  229 (350)
Q Consensus       223 ~~~~~~~  229 (350)
                      +.+|++.
T Consensus       315 i~vwd~~  321 (420)
T 3vl1_A          315 LAQWDLR  321 (420)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcC
Confidence            3444443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-27  Score=211.74  Aligned_cols=188  Identities=13%  Similarity=0.174  Sum_probs=156.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++|+.||.|++||+....                       ........+.+|...|.+++|++.++.+|
T Consensus        73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  129 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNGSLELYSTNEAN-----------------------NAINSMARFSNHSSSVKTVKFNAKQDNVL  129 (416)
T ss_dssp             EEECSSSSCEEEEESSSCEEEECCSSTT-----------------------SCCCEEEECCCSSSCCCEEEECSSSTTBE
T ss_pred             EEECCCCCeEEEEccCCeEEEeeccccc-----------------------ccccchhhccCCccceEEEEEcCCCCCEE
Confidence            5799999999999999999999998210                       01235667788999999999987657899


Q ss_pred             EEEeCCCcEEEEeCCCCc------eEEE----EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGI------LIQT----QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~------~~~~----~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      ++++.|+.|++||+.++.      ....    ..|...|.+++|+|+ +.+|++++.||.|++||++.....        
T Consensus       130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--------  201 (416)
T 2pm9_A          130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV--------  201 (416)
T ss_dssp             EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE--------
T ss_pred             EEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc--------
Confidence            999999999999999876      3322    357889999999998 789999999999999999864432        


Q ss_pred             cceeeecc------CCceEEEEecCCe---EEEEeCCC---cEEEEECCCc-eEEEEec-cCCCceeEEEEEc-cCCeEE
Q 045370          150 QHSVLKGH------NGSITALAFSASH---LISASEDK---TVCLWDVTRR-VSIRRFN-HKKGVVTNLVVIR-QSSLLS  214 (350)
Q Consensus       150 ~~~~~~~~------~~~i~~~~~~~~~---l~s~~~dg---~v~iwd~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~  214 (350)
                        ..+..|      ...|.+++|+|++   +++++.|+   .|++||++++ .++..+. +|...|.+++|+| ++++|+
T Consensus       202 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          202 --IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             --EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred             --eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence              233333      7899999999986   88999998   9999999986 6777777 8999999999999 899999


Q ss_pred             eeecCcc
Q 045370          215 EVSNCQR  221 (350)
Q Consensus       215 ~~~~~~~  221 (350)
                      +++.++.
T Consensus       280 s~~~dg~  286 (416)
T 2pm9_A          280 SSGRDNT  286 (416)
T ss_dssp             EEESSSE
T ss_pred             EEeCCCC
Confidence            8887653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=3.7e-26  Score=196.75  Aligned_cols=215  Identities=20%  Similarity=0.245  Sum_probs=166.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccc----------------cccccccEEEeeccccccceeeecccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH----------------SDQLDQRLIEMELRSLRSLLHYSLEHK   64 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~h~   64 (350)
                      ++|+|+|++|++|+.|+.|++|+..............                +...++.+..++............+|.
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~  171 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS  171 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCS
T ss_pred             EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecccc
Confidence            4799999999999999999999988643322211111                111233333344333344455567899


Q ss_pred             CCceEEEEeeCC-CcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           65 SSVTGLLTISGG-TTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        65 ~~v~~~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ..+..++|.+.. ..++++++.|+.|++||+.+++....+ .|...|++++|+|++++|++|+.||.|++||++...   
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~---  248 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---  248 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE---
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc---
Confidence            999999997643 357889999999999999999888775 488999999999999999999999999999998543   


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec---------cCCCceeEEEEEccCCe
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN---------HKKGVVTNLVVIRQSSL  212 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~  212 (350)
                             .+..+. +...|.++.|+|++ +++++.|+.|++||++++..+..+.         .|...|++++|+|++++
T Consensus       249 -------~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          249 -------HLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             -------EEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             -------eeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence                   223443 44689999999999 8889999999999999988776653         57889999999999999


Q ss_pred             EEeeecCcccccccc
Q 045370          213 LSEVSNCQRKLKKDR  227 (350)
Q Consensus       213 l~~~~~~~~~~~~~~  227 (350)
                      |++++.|+. +++|+
T Consensus       321 l~sgs~Dg~-v~iW~  334 (340)
T 4aow_A          321 LFAGYTDNL-VRVWQ  334 (340)
T ss_dssp             EEEEETTSC-EEEEE
T ss_pred             EEEEeCCCE-EEEEe
Confidence            998887753 34443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=9.2e-27  Score=207.42  Aligned_cols=197  Identities=18%  Similarity=0.285  Sum_probs=160.1

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|++. +|++|+.||.|++||+........                    .......+.+|...|.+++|++.++.+
T Consensus       187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~  246 (430)
T 2xyi_A          187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESL  246 (430)
T ss_dssp             EEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCE
Confidence            57999998 999999999999999983111000                    011234566899999999998877889


Q ss_pred             EEEEeCCCcEEEEeCCCC---ceEEEE-ecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           80 FVSSSLDATCKVWDLGSG---ILIQTQ-VYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      |++++.||.|++||++++   .....+ .|...|++++|+|++. ++++|+.||.|++||++..         ..++..+
T Consensus       247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~---------~~~~~~~  317 (430)
T 2xyi_A          247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---------KLKLHSF  317 (430)
T ss_dssp             EEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT---------TSCSEEE
T ss_pred             EEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC---------CCCeEEe
Confidence            999999999999999987   445444 6889999999999887 6889999999999999852         3345578


Q ss_pred             eccCCceEEEEecCCe---EEEEeCCCcEEEEECCC--------------ceEEEEeccCCCceeEEEEEccCC-eEEee
Q 045370          155 KGHNGSITALAFSASH---LISASEDKTVCLWDVTR--------------RVSIRRFNHKKGVVTNLVVIRQSS-LLSEV  216 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~  216 (350)
                      ..|...|++++|+|++   |++++.||.|++||+..              .+.+..+.+|...|.+++|+|+++ +|+++
T Consensus       318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV  397 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred             ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence            8899999999999987   89999999999999987              367778888999999999999999 66666


Q ss_pred             ecCcccccccc
Q 045370          217 SNCQRKLKKDR  227 (350)
Q Consensus       217 ~~~~~~~~~~~  227 (350)
                      +.+ ..+.+|.
T Consensus       398 s~d-g~i~iw~  407 (430)
T 2xyi_A          398 SED-NIMQVWQ  407 (430)
T ss_dssp             ETT-SEEEEEE
T ss_pred             ECC-CCEEEeE
Confidence            655 4444443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=9.5e-27  Score=205.53  Aligned_cols=195  Identities=16%  Similarity=0.203  Sum_probs=157.0

Q ss_pred             eecCCCCE-EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFL-LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +++|+... +++|+.||.|+||++....                       ........+.+|...|.+++|++.++.+|
T Consensus        41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~-----------------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l   97 (402)
T 2aq5_A           41 AVNPKFMALICEASGGGAFLVLPLGKTG-----------------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVI   97 (402)
T ss_dssp             EECSSEEEEEBCCSSSCCEEEEETTCCE-----------------------ECCTTCCCBCCCSSCEEEEEECTTCTTEE
T ss_pred             EECCCeEEEEEEEcCCCEEEEEECccCC-----------------------CCCCCCceEecCCCCEEEEEeCCCCCCEE
Confidence            56666643 4457899999999987310                       01133455678999999999977577899


Q ss_pred             EEEeCCCcEEEEeCCCC-------ceEEEE-ecCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSG-------ILIQTQ-VYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ++|+.||.|++||+.++       ..+..+ .|...|.+++|+|++ ++|++++.||.|++||++++.          ..
T Consensus        98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----------~~  167 (402)
T 2aq5_A           98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----------AV  167 (402)
T ss_dssp             EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----------EE
T ss_pred             EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----------cc
Confidence            99999999999999987       444444 589999999999998 699999999999999998543          33


Q ss_pred             eee--eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe-ccCCCc-eeEEEEEccCCeEEeee--cCcccc
Q 045370          152 SVL--KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF-NHKKGV-VTNLVVIRQSSLLSEVS--NCQRKL  223 (350)
Q Consensus       152 ~~~--~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~~~--~~~~~~  223 (350)
                      ..+  .+|...|++++|+|++  |++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++++|+++.  ..+..+
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i  247 (402)
T 2aq5_A          168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV  247 (402)
T ss_dssp             EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE
T ss_pred             EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE
Confidence            355  6799999999999998  999999999999999999999998 677775 89999999999999873  334444


Q ss_pred             ccccCC
Q 045370          224 KKDRMP  229 (350)
Q Consensus       224 ~~~~~~  229 (350)
                      .+|+..
T Consensus       248 ~iwd~~  253 (402)
T 2aq5_A          248 ALWDTK  253 (402)
T ss_dssp             EEEETT
T ss_pred             EEEcCc
Confidence            555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=7.2e-27  Score=224.26  Aligned_cols=184  Identities=15%  Similarity=0.205  Sum_probs=162.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|||+|++|++|+.||.|+|||+.                           .+.....+.+|..+|.+++|+| ++.+|
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~---------------------------~~~~~~~~~~~~~~v~~~~~s~-~~~~l   70 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYE---------------------------TQVEVRSIQVTETPVRAGKFIA-RKNWI   70 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETT---------------------------TTEEEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECC---------------------------CCceEEEEecCCCcEEEEEEeC-CCCEE
Confidence            5899999999999999999999998                           4666777889999999999977 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.||.|++||+.+++.+..+. |...|.+++|+|++.+|++++.||.|++||+...         ......+.+|..
T Consensus        71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---------~~~~~~~~~~~~  141 (814)
T 3mkq_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN---------WALEQTFEGHEH  141 (814)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT---------SEEEEEEECCSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC---------ceEEEEEcCCCC
Confidence            999999999999999999888765 8899999999999999999999999999999853         233447778999


Q ss_pred             ceEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEc--cCCeEEeeecCcc
Q 045370          160 SITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIR--QSSLLSEVSNCQR  221 (350)
Q Consensus       160 ~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~~~~~~~~  221 (350)
                      .|.+++|+| ++  +++++.||.|++||+.++.....+..+. ..+.+++|+|  ++.+|++++.++.
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  209 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence            999999999 66  9999999999999999888777776544 8899999999  8999998877653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=3.1e-26  Score=195.34  Aligned_cols=208  Identities=14%  Similarity=0.186  Sum_probs=158.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc--------------ccccccEEEeeccccccceeeeccccCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS--------------DQLDQRLIEMELRSLRSLLHYSLEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~h~~~   66 (350)
                      |+|+|+|++|++|+.||+|++||+++.........+..              ...++.+..............+.+|...
T Consensus        73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (318)
T 4ggc_A           73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  152 (318)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence            57999999999999999999999987543322211111              1112233333333344556677899999


Q ss_pred             ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceE-----EEEecCCceeEEEEcCCCcE---EEEEccCCeEEEEeCCcc
Q 045370           67 VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILI-----QTQVYPQAVTAIAFHPGEQL---LFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~---l~~~~~dg~i~i~d~~~~  138 (350)
                      +..+.+.+ .+.++++++.|++|++||+.+++..     ....+...|.++.++|++..   +++++.++.|++||....
T Consensus       153 ~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          153 VCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             eEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            99998865 6788999999999999999886532     22347788999999997653   346678899999998853


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEE--EeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LIS--ASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                      ...           ....+...+..+.|+|.+  +++  |+.|+.|++||+++++++.++.+|.++|++++|+|++++|+
T Consensus       232 ~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          232 ACL-----------SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             CEE-----------EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             ccc-----------ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            321           334567789999999987  444  44899999999999999999999999999999999999999


Q ss_pred             eeecCc
Q 045370          215 EVSNCQ  220 (350)
Q Consensus       215 ~~~~~~  220 (350)
                      +++.|+
T Consensus       301 S~s~D~  306 (318)
T 4ggc_A          301 SAAADE  306 (318)
T ss_dssp             EEETTT
T ss_pred             EEecCC
Confidence            888774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=1.7e-27  Score=203.37  Aligned_cols=194  Identities=16%  Similarity=0.158  Sum_probs=151.5

Q ss_pred             CeecC--CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-C
Q 045370            1 MVFSD--DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-T   77 (350)
Q Consensus         1 i~~s~--dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~   77 (350)
                      |+|+|  ++++|++|+.|++|++||+++.                         .......+.+|...|.+++|+|.. +
T Consensus        63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------------------------~~~~~~~~~~h~~~V~~v~~~p~~~g  117 (316)
T 3bg1_A           63 VAWAHPMYGNILASCSYDRKVIIWREENG-------------------------TWEKSHEHAGHDSSVNSVCWAPHDYG  117 (316)
T ss_dssp             EEECCGGGSSCEEEEETTSCEEEECCSSS-------------------------CCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred             EEeCCCCCCCEEEEEECCCEEEEEECCCC-------------------------cceEEEEccCCCCceEEEEECCCCCC
Confidence            46876  4899999999999999999721                         012345567899999999998753 6


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEE---E-EecCCceeEEEEcCC-----------------CcEEEEEccCCeEEEEeCC
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQ---T-QVYPQAVTAIAFHPG-----------------EQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~---~-~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~  136 (350)
                      .+|++|+.|++|++||+..+....   . ..|...+.+++|+|+                 +.+|++|+.|+.|++||++
T Consensus       118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence            789999999999999998764321   1 247788999999997                 4689999999999999986


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe------EEEEeCCCcEEEEECCCc---e-EEEEeccCCCceeEEEE
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDVTRR---V-SIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------l~s~~~dg~v~iwd~~~~---~-~~~~~~~~~~~v~~l~~  206 (350)
                      ...       .......+.+|...|.+++|+|++      |++|+.|++|++||+.+.   . ....+..|...|.+++|
T Consensus       198 ~~~-------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~  270 (316)
T 3bg1_A          198 EDG-------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW  270 (316)
T ss_dssp             TTS-------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE
T ss_pred             CCC-------ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE
Confidence            321       012334678999999999999973      999999999999999762   1 12334568889999999


Q ss_pred             EccCCeEEeeecCcccccccc
Q 045370          207 IRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      +|++++|++++.|+. +++|+
T Consensus       271 sp~g~~las~~~D~~-v~lw~  290 (316)
T 3bg1_A          271 SITANILAVSGGDNK-VTLWK  290 (316)
T ss_dssp             CTTTCCEEEEESSSC-EEEEE
T ss_pred             cCCCCEEEEEcCCCe-EEEEE
Confidence            999999998887653 33443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-26  Score=200.17  Aligned_cols=217  Identities=14%  Similarity=0.092  Sum_probs=153.1

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccc-----------cccccccccEEEeecc--------cccc-ceeeec
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELM-----------HHSDQLDQRLIEMELR--------SLRS-LLHYSL   61 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--------~~~~-~~~~~~   61 (350)
                      .+.+++.+|++|+.||+|++||+.++........           -.+...++.+..++..        .... ......
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            3567889999999999999999986432211100           0111223333322211        1122 222334


Q ss_pred             cccCCceEEEEeeC-CCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           62 EHKSSVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        62 ~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      +|.+.|.+++|+|. ++.++++|+.||+|++||+.+++.....  .+...+.+++|+|++.+|++|+.||.|++||++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            67789999999651 5688999999999999999999887654  35567999999999999999999999999999964


Q ss_pred             ccccccccccccceeeec-cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc---CCCcee--EEEEEccC
Q 045370          139 LLEDHFIVGEDQHSVLKG-HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH---KKGVVT--NLVVIRQS  210 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~--~l~~~~~~  210 (350)
                      ...         ...+.. |..+|++++|+|++  |++++ |+.|++||+++++.+..+..   |...+.  +++|+|++
T Consensus       203 ~~~---------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          203 DQA---------SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             TSC---------CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             CCC---------ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            321         135566 99999999999998  88888 55999999999877655543   444444  59999999


Q ss_pred             CeEEeeecCccccccccC
Q 045370          211 SLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~  228 (350)
                      ++|++++.++..+.+|.+
T Consensus       273 ~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CEEEEecCCCCcEEEEEE
Confidence            999987763434445433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.8e-27  Score=209.39  Aligned_cols=198  Identities=8%  Similarity=0.008  Sum_probs=143.2

Q ss_pred             CeecC--------CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEE
Q 045370            1 MVFSD--------DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLT   72 (350)
Q Consensus         1 i~~s~--------dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   72 (350)
                      |+|+|        ||++||||+.|++|+|||+.                           ..........|..+|.+++|
T Consensus       142 v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~---------------------------~~~~~~~~~~~~~~v~~v~~  194 (393)
T 4gq1_A          142 IDIADVYSADNRLAEQVIASVGDDCTLIIWRLT---------------------------DEGPILAGYPLSSPGISVQF  194 (393)
T ss_dssp             EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE---------------------------TTEEEEEEEECSSCEEEEEE
T ss_pred             EEEccccccccCCCCCEEEEEECCCeEEEEECC---------------------------CCceeeeecCCCCCcEEEEE
Confidence            46776        89999999999999999997                           35566677889999999999


Q ss_pred             eeCCCcEEEEEeCCCcEEEEeCCCCceEEE--------------------------EecCCceeEEEEc-CCCcEEEEEc
Q 045370           73 ISGGTTFFVSSSLDATCKVWDLGSGILIQT--------------------------QVYPQAVTAIAFH-PGEQLLFAGS  125 (350)
Q Consensus        73 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--------------------------~~~~~~v~~~~~~-~~~~~l~~~~  125 (350)
                      +|.+..+|++|+.|++|++||+.+++....                          ..|...+.++.|. |++..|++++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s  274 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC  274 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence            886667899999999999999988754332                          1245678889987 7999999999


Q ss_pred             cCCeEEEEeCCcccccccccccc---------ccceeeeccCCceEEEEecCC--e--EEEEeCCCcEEEEECCCceEEE
Q 045370          126 IDGRIFVSPLKFLLLEDHFIVGE---------DQHSVLKGHNGSITALAFSAS--H--LISASEDKTVCLWDVTRRVSIR  192 (350)
Q Consensus       126 ~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~--~--l~s~~~dg~v~iwd~~~~~~~~  192 (350)
                      .|+.+++||+.............         ........+.. .....++|.  +  +++|+.||.|++||+.+++.+.
T Consensus       275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~  353 (393)
T 4gq1_A          275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS  353 (393)
T ss_dssp             TTSEEEEEEC-------------------CCSCSEEEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE
T ss_pred             CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence            99999999998654332111000         00111111222 222334442  2  6778899999999999998888


Q ss_pred             EeccCCCceeEEEEEccCCeEEeeecCcc-ccccc
Q 045370          193 RFNHKKGVVTNLVVIRQSSLLSEVSNCQR-KLKKD  226 (350)
Q Consensus       193 ~~~~~~~~v~~l~~~~~~~~l~~~~~~~~-~~~~~  226 (350)
                      .+..|..+|.+++|+|+|++|++++.++. +|+++
T Consensus       354 ~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          354 IPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             EecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            88888999999999999999999987753 34443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=205.00  Aligned_cols=213  Identities=15%  Similarity=0.190  Sum_probs=156.3

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeC----ccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSM----TRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++|+|+|+ +|++|+.||.|++||+    .++.......         ....+  ...........+|...|.+++|++ 
T Consensus        51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-  118 (425)
T 1r5m_A           51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT---------IIAEL--RHPFALSASSGKTTNQVTCLAWSH-  118 (425)
T ss_dssp             EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE---------EEEEE--ECCCCCC------CBCEEEEEECT-
T ss_pred             EEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc---------ccccc--cccccccccccCCCCceEEEEEcC-
Confidence            57999999 9999999999999999    5321000000         00000  000000011234788999999966 


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc--------
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV--------  146 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------  146 (350)
                      ++.+|++|+.||.|++|| .++..+..+ .|...|.+++|+|++++|++++.||.|++||+.++........        
T Consensus       119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            778999999999999999 556666655 4889999999999999999999999999999987653321110        


Q ss_pred             --------------------------------------ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC
Q 045370          147 --------------------------------------GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT  186 (350)
Q Consensus       147 --------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~  186 (350)
                                                            .......+..|...|.+++|+|++  |++++.||.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                                  112334566889999999999998  9999999999999999


Q ss_pred             CceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          187 RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       187 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +++.+..+..|...|.+++|+|++ ++++++.++ .+.+|++
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~  317 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSL  317 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEET
T ss_pred             CCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEEC
Confidence            999999998899999999999999 777777664 3344433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=4.1e-27  Score=207.26  Aligned_cols=181  Identities=17%  Similarity=0.164  Sum_probs=153.8

Q ss_pred             CeecCC----C---CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccc-----eeeeccc-----
Q 045370            1 MVFSDD----G---FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL-----LHYSLEH-----   63 (350)
Q Consensus         1 i~~s~d----g---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h-----   63 (350)
                      ++|+|+    |   ++|++|+.||.|++||+.+                           ...     ...+..|     
T Consensus        68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~---------------------------~~~~~~~~~~~~~~~~~~~~  120 (397)
T 1sq9_A           68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITR---------------------------EDETKKVIFEKLDLLDSDMK  120 (397)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE---------------------------CTTTCCEEEEEECCSCTTGG
T ss_pred             EEEecccccCCccccEEEEEcCCCCEEEEEccC---------------------------CcccccccceeecccccccC
Confidence            468888    9   9999999999999999983                           333     5666777     


Q ss_pred             cCCceEEEEe----eCCCcE-EEEEeCCCcEEEEeCCC------CceEE-----EEe--------cCCceeEEEEcCCCc
Q 045370           64 KSSVTGLLTI----SGGTTF-FVSSSLDATCKVWDLGS------GILIQ-----TQV--------YPQAVTAIAFHPGEQ  119 (350)
Q Consensus        64 ~~~v~~~~~~----~~~~~~-l~s~~~d~~v~vwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~  119 (350)
                      ...|.+++|+    + ++.+ |++++.||.|++||+.+      +..+.     .+.        |...+.+++|+|++ 
T Consensus       121 ~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  198 (397)
T 1sq9_A          121 KHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  198 (397)
T ss_dssp             GSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-
Confidence            5999999997    5 6677 99999999999999998      55544     442        67889999999999 


Q ss_pred             EEEEEccCCeEEEEeCCccccccccccccccceeeec---c---CCceEEEEecCCe--EEEEeCC---CcEEEEECCCc
Q 045370          120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG---H---NGSITALAFSASH--LISASED---KTVCLWDVTRR  188 (350)
Q Consensus       120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~--l~s~~~d---g~v~iwd~~~~  188 (350)
                      ++++++.||.|++||++..          .....+..   |   ...|.+++|+|++  |++++.|   |.|++||++++
T Consensus       199 ~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTL----------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EEEEECTTSEEEEEETTTT----------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             eEEEEeCCCcEEEEECCCC----------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            9999999999999999853          33446666   8   8999999999998  9999999   99999999999


Q ss_pred             eEEEEecc-------------CCCceeEEEEEccCCeEEeeecCc
Q 045370          189 VSIRRFNH-------------KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       189 ~~~~~~~~-------------~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +.+..+..             |...|.+++|+|++++|++++.++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            99999988             999999999999999999888765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.2e-26  Score=192.95  Aligned_cols=211  Identities=18%  Similarity=0.207  Sum_probs=166.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccc--ccccccccc---------------cccccEEEeeccccccceeeeccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQ--TSELMHHSD---------------QLDQRLIEMELRSLRSLLHYSLEH   63 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~h   63 (350)
                      ++|+|++++|++|+.||.|++|++......  ......+..               ..++.+..++   .......+..|
T Consensus        65 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~  141 (313)
T 3odt_A           65 VCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAH  141 (313)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECC
T ss_pred             EEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccC
Confidence            579999999999999999999998754311  111111111               1123333333   34556667889


Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      ...+.++.|.+.++.++++++.|+.|++||.  +.....+.  +...+.+++|+|++. +++++.||.|++||+++    
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~----  214 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT----  214 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT----
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc----
Confidence            9999999999988899999999999999993  44444443  888999999999998 89999999999999984    


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                            .+....+.+|...|++++|+|++ +++++.||.|++||+++++.+..+..|..+|.+++|+|++++++ ++.++
T Consensus       215 ------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~dg  287 (313)
T 3odt_A          215 ------GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV-GSSDN  287 (313)
T ss_dssp             ------CCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE-EETTS
T ss_pred             ------hhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE-EeCCC
Confidence                  34455778899999999999998 99999999999999999999999999999999999999999554 55543


Q ss_pred             cccccccCC
Q 045370          221 RKLKKDRMP  229 (350)
Q Consensus       221 ~~~~~~~~~  229 (350)
                       .+.+|++.
T Consensus       288 -~i~iw~~~  295 (313)
T 3odt_A          288 -LVRIFSQE  295 (313)
T ss_dssp             -CEEEEESC
T ss_pred             -cEEEEeCC
Confidence             44455443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=3e-26  Score=201.69  Aligned_cols=188  Identities=16%  Similarity=0.196  Sum_probs=154.3

Q ss_pred             Ceec----CCCCE-EEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccccee-----ee-------ccc
Q 045370            1 MVFS----DDGFL-LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH-----YS-------LEH   63 (350)
Q Consensus         1 i~~s----~dg~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~h   63 (350)
                      ++|+    |++++ |++|+.||.|++||+.......                     ....+.     .+       ..|
T Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~  185 (397)
T 1sq9_A          127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES---------------------NSLTLNWSPTLELQGTVESPMTP  185 (397)
T ss_dssp             EEEECCC----CEEEEEEETTSCEEEEEEESSSSHH---------------------HHTTTCCCCEEEEEEEECCSSSS
T ss_pred             EEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc---------------------ccceeeccCcceeeeeeccccCC
Confidence            4688    99999 9999999999999998310000                     011111     33       458


Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe----c---CCceeEEEEcCCCcEEEEEccC---CeEEEE
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV----Y---PQAVTAIAFHPGEQLLFAGSID---GRIFVS  133 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~---~~~v~~~~~~~~~~~l~~~~~d---g~i~i~  133 (350)
                      ...|.+++|++ ++ ++++++.|+.|++||+.+++.+..+.    |   ...|.+++|+|++.+|++++.|   |.|++|
T Consensus       186 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          186 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            99999999977 55 99999999999999999999888866    5   8899999999999999999999   999999


Q ss_pred             eCCccccccccccccccceeeec-------------cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec---
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKG-------------HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN---  195 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~---  195 (350)
                      |++++.          .+..+.+             |...|.+++|+|++  |++++.||.|++||+++++.+..+.   
T Consensus       264 d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (397)
T 1sq9_A          264 ETEFGE----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC  333 (397)
T ss_dssp             ETTTCC----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             ECCCCc----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence            998543          3345556             89999999999998  9999999999999999999999998   


Q ss_pred             ---cC---------------CCceeEEEEEccC----------CeEEeeecCcc
Q 045370          196 ---HK---------------KGVVTNLVVIRQS----------SLLSEVSNCQR  221 (350)
Q Consensus       196 ---~~---------------~~~v~~l~~~~~~----------~~l~~~~~~~~  221 (350)
                         .|               ..+|.+++|+|++          ++|++++.++.
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence               77               8999999999998          78887777653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.4e-26  Score=201.81  Aligned_cols=188  Identities=18%  Similarity=0.188  Sum_probs=156.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc--ceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS--LLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|++++|++|+.||.|++||+.+                           ..  .......|...|.+++|++ ++.
T Consensus        58 ~~~~~~~~~l~~~~~dg~i~vwd~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~~-~~~  109 (372)
T 1k8k_C           58 VDWAPDSNRIVTCGTDRNAYVWTLKG---------------------------RTWKPTLVILRINRAARCVRWAP-NEK  109 (372)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEET---------------------------TEEEEEEECCCCSSCEEEEEECT-TSS
T ss_pred             EEEeCCCCEEEEEcCCCeEEEEECCC---------------------------CeeeeeEEeecCCCceeEEEECC-CCC
Confidence            57999999999999999999999972                           22  2233467899999999976 678


Q ss_pred             EEEEEeCCCcEEEEeCCCCce---EEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc--------cc
Q 045370           79 FFVSSSLDATCKVWDLGSGIL---IQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH--------FI  145 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~  145 (350)
                      ++++++.|+.|++||+..+..   ...+  .|...|.+++|+|++.+|++++.||.|++||++.......        ..
T Consensus       110 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  189 (372)
T 1k8k_C          110 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM  189 (372)
T ss_dssp             EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred             EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence            999999999999999998763   2222  3678999999999999999999999999999763321110        01


Q ss_pred             cccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          146 VGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      ........+..|...|.+++|+|++  |++++.||.|++||+++++.+..+..|..+|.+++|+|++.+++++
T Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          190 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence            1234455677899999999999998  9999999999999999999999999999999999999999999876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-27  Score=213.14  Aligned_cols=191  Identities=12%  Similarity=0.020  Sum_probs=136.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-----CCc
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-----GTT   78 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~   78 (350)
                      +|+++.|++++.|++|+|||+.+...                       .......+.+|.+.|.+++|+|.     ++.
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~-----------------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~  226 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTL-----------------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG  226 (524)
T ss_dssp             ------------CEEEEEEEEETTTC-----------------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSC
T ss_pred             chhhhhhccCCCCceEEEEEccCCCC-----------------------CceEEEEEEecCCcEEEEEECCCCCCCCCCc
Confidence            34555566677899999999873100                       00012335667899999999874     357


Q ss_pred             EEEEEeCCCcEEEEeCCCCceE-----------EE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILI-----------QT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~-----------~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      +|++++.||+|++||+..+...           .. ..|...|.+++|+++ ..|++|+.||.|++||++.+        
T Consensus       227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~--------  297 (524)
T 2j04_B          227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDP--------  297 (524)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBC--------
T ss_pred             eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCC--------
Confidence            9999999999999999876421           12 247789999999986 48999999999999999853        


Q ss_pred             ccccceeeeccCCceEEE--EecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCC--ceeEEEEEccCCeEEeeecC
Q 045370          147 GEDQHSVLKGHNGSITAL--AFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKG--VVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~--~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~~  219 (350)
                       ..+...+.+|...|+++  .|+|++   |++|+.|++|+|||+++++.+..+.+|..  .|.+++|+|+++.+++++.+
T Consensus       298 -~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d  376 (524)
T 2j04_B          298 -EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA  376 (524)
T ss_dssp             -SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred             -CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC
Confidence             12334678999999999  577763   89999999999999999887766665543  58899999999998877766


Q ss_pred             ccccccccC
Q 045370          220 QRKLKKDRM  228 (350)
Q Consensus       220 ~~~~~~~~~  228 (350)
                      . .+++|+.
T Consensus       377 ~-tv~lwd~  384 (524)
T 2j04_B          377 S-SLRAVPS  384 (524)
T ss_dssp             S-EEEEEET
T ss_pred             C-cEEEEEC
Confidence            4 3444443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.1e-26  Score=200.08  Aligned_cols=196  Identities=16%  Similarity=0.189  Sum_probs=157.3

Q ss_pred             CeecCC--CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-C
Q 045370            1 MVFSDD--GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-T   77 (350)
Q Consensus         1 i~~s~d--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~   77 (350)
                      |+|+|+  +++|++|+.||.|++||+.+.                         .......+..|...|.+++|++.+ +
T Consensus        61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           61 VDWAHPKFGTILASCSYDGKVLIWKEENG-------------------------RWSQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EEeCCCCCCCEEEEeccCCEEEEEEcCCC-------------------------ceeEeeeecCCCcceEEEEeCCCCCC
Confidence            478877  999999999999999999821                         012556677899999999997742 7


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceE---EEEecCCceeEEEEcC-------------CCcEEEEEccCCeEEEEeCCccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILI---QTQVYPQAVTAIAFHP-------------GEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      .++++++.|+.|++||+.++...   ....|...|.+++|+|             ++.+|++++.||.|++||++.....
T Consensus       116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred             CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence            89999999999999999987432   2346888999999999             6999999999999999999854321


Q ss_pred             cccccccccceeeeccCCceEEEEecCC---e--EEEEeCCCcEEEEECCCce-----EEEEeccCCCceeEEEEEccCC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSAS---H--LISASEDKTVCLWDVTRRV-----SIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~--l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                            ......+.+|...|++++|+|+   +  |++++.||.|++||++++.     .+.....|...|.+++|+|+++
T Consensus       196 ------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  269 (379)
T 3jrp_A          196 ------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  269 (379)
T ss_dssp             ------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             ------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC
Confidence                  1233467789999999999998   6  9999999999999999863     2223334888999999999999


Q ss_pred             eEEeeecCccccccccC
Q 045370          212 LLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       212 ~l~~~~~~~~~~~~~~~  228 (350)
                      +|++++.++. +.+|++
T Consensus       270 ~l~~~~~dg~-i~iw~~  285 (379)
T 3jrp_A          270 VLALSGGDNK-VTLWKE  285 (379)
T ss_dssp             CEEEEESSSS-EEEEEE
T ss_pred             EEEEecCCCc-EEEEeC
Confidence            9998887643 444444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=199.68  Aligned_cols=231  Identities=19%  Similarity=0.222  Sum_probs=169.8

Q ss_pred             CeecCC---CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc-ceeeeccccCCceEEEEee--
Q 045370            1 MVFSDD---GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS-LLHYSLEHKSSVTGLLTIS--   74 (350)
Q Consensus         1 i~~s~d---g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~--   74 (350)
                      ++|+|+   |.+|++|+.||.|++||+.+                           .. ....+.+|...|.++.|.+  
T Consensus        71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~  123 (357)
T 3i2n_A           71 GTFGATSLQQRYLATGDFGGNLHIWNLEA---------------------------PEMPVYSVKGHKEIINAIDGIGGL  123 (357)
T ss_dssp             EECTTCCTTTCCEEEEETTSCEEEECTTS---------------------------CSSCSEEECCCSSCEEEEEEESGG
T ss_pred             EEEcCCCCCCceEEEecCCCeEEEEeCCC---------------------------CCccEEEEEecccceEEEeecccc
Confidence            478898   79999999999999999983                           33 5677789999999997753  


Q ss_pred             ---CCCcEEEEEeCCCcEEEEeCCCCc-eEEEEe-c----CCceeEEE----EcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           75 ---GGTTFFVSSSLDATCKVWDLGSGI-LIQTQV-Y----PQAVTAIA----FHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        75 ---~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~-~----~~~v~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                         +++.+|++++.||.|++||+.++. ....+. +    ...+.+++    |+|++.++++++.||.|++||++.+.. 
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-  202 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-  202 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-
Confidence               577899999999999999999886 555543 2    33788888    678999999999999999999986432 


Q ss_pred             cccccccccceeeeccCCceEEEEecC---Ce--EEEEeCCCcEEEEECCCceEEEEec-----cCCCceeEEEEEccCC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSA---SH--LISASEDKTVCLWDVTRRVSIRRFN-----HKKGVVTNLVVIRQSS  211 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~  211 (350)
                                .....|...|.+++|+|   ++  +++++.||.|++||+++++.+..+.     .|...|.+++|+|+++
T Consensus       203 ----------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          203 ----------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             ----------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             ----------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence                      24467889999999999   66  9999999999999999877655544     8999999999999998


Q ss_pred             -eEEeeecCccccccccCCccccCCCC---c--cccccceEEeeccccCCCCcccccccccchhh
Q 045370          212 -LLSEVSNCQRKLKKDRMPSLEKYPQL---N--SLSMEMVILLQSCFFNKDDQCSINIRRTKSLF  270 (350)
Q Consensus       212 -~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (350)
                       +|++++.++ .+.+|++.........   .  .........+....+|...+..+.|++++.++
T Consensus       273 ~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          273 ELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             EEEEEEETTS-EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             cEEEEEeCCC-cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence             777777664 3334433221111000   0  00000112333345566666677777776654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=4e-26  Score=191.03  Aligned_cols=214  Identities=14%  Similarity=0.060  Sum_probs=145.7

Q ss_pred             CeecCC----CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee--
Q 045370            1 MVFSDD----GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS--   74 (350)
Q Consensus         1 i~~s~d----g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--   74 (350)
                      |+||||    ++++++++.+  +.+|++.++....    ......++.+..+.....+..+.....|...+..++|++  
T Consensus       117 la~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~----ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          117 LFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVS----SSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             ECC------CCEEEEEEEEE--EEEEEETTTEEEE----EESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             EEECCCccccccEEEeCCCe--EEEEecCCCcEEE----ecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            478999    8899988743  7777764211111    101112333333333334566677788999998888876  


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEEEe-c---CCceeEEEEcCCCcEE------------EEEccCCeEEEEeCCcc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQTQV-Y---PQAVTAIAFHPGEQLL------------FAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~  138 (350)
                      .++.+|++|+.|++|++||+.+++++..+. |   ...+.+++|+|+|.++            ++|+.|++|++||..++
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            356899999999999999999999999875 3   3467788999999886            56778999999999876


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCcee-EEEEEccCCeEEeee
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVT-NLVVIRQSSLLSEVS  217 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~  217 (350)
                      .........     .-.+|...+.+..++...+++|+.|++|+|||+.+++++.++.+|...+. +++|+|+|++|++|+
T Consensus       271 k~l~v~~~~-----~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          271 LSVGVMLYC-----LPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             EEEEEEEEC-----CCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             EEEEEEEee-----ccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            543211000     01356655555555533389999999999999999999999998877655 589999999999887


Q ss_pred             cCccccccc
Q 045370          218 NCQRKLKKD  226 (350)
Q Consensus       218 ~~~~~~~~~  226 (350)
                      .|+ .+++|
T Consensus       346 ~D~-TIklW  353 (356)
T 2w18_A          346 KDG-NIFVY  353 (356)
T ss_dssp             TTS-CEEEE
T ss_pred             CCC-cEEEe
Confidence            663 34444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.9e-26  Score=198.47  Aligned_cols=182  Identities=12%  Similarity=0.187  Sum_probs=148.1

Q ss_pred             CeecCC----CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-----cccCCceEEE
Q 045370            1 MVFSDD----GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-----EHKSSVTGLL   71 (350)
Q Consensus         1 i~~s~d----g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~   71 (350)
                      |+|+|+    ...+++++.++.|++||+.+                           ...+..+.     .|...|.+++
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~---------------------------~~~~~~~~~~~~~~~~~~v~~~~   76 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTLYECHS---------------------------QGEIRLLQSYVDADADENFYTCA   76 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEEEEECG---------------------------GGCEEEEEEEECSCTTCCEEEEE
T ss_pred             EEEecccCCCCceEEEECCCCEEEEEEcCC---------------------------CcEEEeeeeccccCCCCcEEEEE
Confidence            478884    45677777778999999983                           22222222     3678899999


Q ss_pred             EeeCC---CcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           72 TISGG---TTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        72 ~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      |++..   +.+|++|+.||.|++||+.+++.+..+. |...|.+++|+| ++.+|++++.||.|++||++.+..      
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------  150 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------  150 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE------
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE------
Confidence            98853   5689999999999999999999888876 899999999999 999999999999999999985432      


Q ss_pred             ccccceee---eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--------------------------
Q 045370          147 GEDQHSVL---KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--------------------------  195 (350)
Q Consensus       147 ~~~~~~~~---~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------  195 (350)
                          ...+   .+|...|.+++|+|++  |++++.||.|++||+++++.+..+.                          
T Consensus       151 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          151 ----VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             ----EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             ----EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence                2244   6799999999999998  9999999999999999876554443                          


Q ss_pred             --cCCCceeEEEEEccCCeEEeeecCcc
Q 045370          196 --HKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       196 --~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                        .|...|.+++|+  +.++++++.++.
T Consensus       227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~  252 (366)
T 3k26_A          227 RDIHRNYVDCVRWL--GDLILSKSCENA  252 (366)
T ss_dssp             CSSCSSCCCEEEEE--TTEEEEECSSSE
T ss_pred             ccCCcceEEEEEEc--CCEEEEEecCCE
Confidence              388999999999  778887777643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=2.8e-26  Score=197.72  Aligned_cols=193  Identities=18%  Similarity=0.056  Sum_probs=153.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc-E
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT-F   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~   79 (350)
                      ++|+|++++|++|+.||.|++||+....                        ..........|...|.+++|++ ++. +
T Consensus        17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~~~   71 (342)
T 1yfq_A           17 IKIIPSKSLLLITSWDGSLTVYKFDIQA------------------------KNVDLLQSLRYKHPLLCCNFID-NTDLQ   71 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTT------------------------TEEEEEEEEECSSCEEEEEEEE-SSSEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEeCCCC------------------------ccccceeeeecCCceEEEEECC-CCCcE
Confidence            5799999999999999999999998310                        0112445568999999999987 577 8


Q ss_pred             EEEEeCCCcEEEEeC-CCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           80 FVSSSLDATCKVWDL-GSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        80 l~s~~~d~~v~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +++|+.||.|++||+ .++.......  |...|.+++|+| +.+|++++.||.|++||++....... .........+. 
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-  148 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTK-  148 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSS-
T ss_pred             EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc-cccCCeeeEEe-
Confidence            999999999999999 8887755566  899999999999 99999999999999999985110000 00022222344 


Q ss_pred             cCCceEEEEecCCeEEEEeCCCcEEEEECCC-ce--EEEEeccCCCceeEEEEEc-cCCeEEeeecCcc
Q 045370          157 HNGSITALAFSASHLISASEDKTVCLWDVTR-RV--SIRRFNHKKGVVTNLVVIR-QSSLLSEVSNCQR  221 (350)
Q Consensus       157 ~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~~~  221 (350)
                      |...|.+++|+|+++++++.|+.|++||+++ +.  .......|...+.+++|+| +++++++++.++.
T Consensus       149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            8889999999999999999999999999998 44  2333446788999999999 9999998887653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.5e-26  Score=203.34  Aligned_cols=194  Identities=19%  Similarity=0.294  Sum_probs=150.6

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+| ++++|++|+.||+|+|||+.+.....                     .... .....|...|.+++|++ ++.+
T Consensus        69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---------------------~~~~-~~~~~h~~~v~~~~~~~-~~~~  125 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---------------------VYSS-SLTYDCSSTVTQITMIP-NFDA  125 (437)
T ss_dssp             EEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---------------------CCSC-SEEEECSSCEEEEEECT-TSSE
T ss_pred             EEECCCCCCEEEEecCCceEEEeECcccccCc---------------------ccce-eeeccCCCCEEEEEEeC-CCCE
Confidence            57999 99999999999999999987311000                     0111 12225999999999976 7789


Q ss_pred             EEEEeCCCcEEEEeCC---CCceEEEEe-------------cCCceeEEE--EcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           80 FVSSSLDATCKVWDLG---SGILIQTQV-------------YPQAVTAIA--FHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      |++|+.||+|++||+.   +++......             +...+.++.  +++++.+|++++.||.|++||++++   
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  202 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL---  202 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC---
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---
Confidence            9999999999999995   555444322             345566666  5578999999999999999999853   


Q ss_pred             cccccccccceeeec--cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEc----cCCe
Q 045370          142 DHFIVGEDQHSVLKG--HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIR----QSSL  212 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~----~~~~  212 (350)
                             .....+.+  |...|++++|+|++  |++|+.||.|++||+++++++..+. .|..+|.+++|+|    ++.+
T Consensus       203 -------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          203 -------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             -------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             -------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence                   33446666  88999999999998  9999999999999999999999886 6788999996665    5778


Q ss_pred             EEeeecCccccccccC
Q 045370          213 LSEVSNCQRKLKKDRM  228 (350)
Q Consensus       213 l~~~~~~~~~~~~~~~  228 (350)
                      |++++.++ .+.+|++
T Consensus       276 l~s~~~dg-~i~iwd~  290 (437)
T 3gre_A          276 VVGGSSKT-FLTIWNF  290 (437)
T ss_dssp             EEEESTTE-EEEEEET
T ss_pred             EEEEcCCC-cEEEEEc
Confidence            88777664 3344443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=7.4e-26  Score=226.64  Aligned_cols=156  Identities=26%  Similarity=0.330  Sum_probs=138.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|||||++|++|+.||+|++||+.                           ....+..+.+|...|.+++|++ ++.++
T Consensus       621 ~~~s~~~~~l~s~~~d~~i~vw~~~---------------------------~~~~~~~~~~h~~~v~~~~~s~-~~~~l  672 (1249)
T 3sfz_A          621 ACFSQDGQRIASCGADKTLQVFKAE---------------------------TGEKLLDIKAHEDEVLCCAFSS-DDSYI  672 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT---------------------------TCCEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECC---------------------------CCCEEEEeccCCCCEEEEEEec-CCCEE
Confidence            5799999999999999999999998                           4667777889999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC--CCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP--GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|+.|+.|++||+.+++.+..+ .|...|.+++|+|  ++.++++|+.||.|++||+.++          .....+.+|
T Consensus       673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h  742 (1249)
T 3sfz_A          673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK----------ECRNTMFGH  742 (1249)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS----------SEEEEECCC
T ss_pred             EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc----------chhheecCC
Confidence            99999999999999999988886 4888999999999  5568999999999999999854          344477899


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                      ...|++++|+|++  +++++.||.|++||+++++....+
T Consensus       743 ~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence            9999999999998  999999999999999887665443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-26  Score=199.88  Aligned_cols=152  Identities=7%  Similarity=-0.029  Sum_probs=121.9

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCC---------CCceEEEE--ecCCceeEEEEcC--CCcEEEEEccCCeE
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLG---------SGILIQTQ--VYPQAVTAIAFHP--GEQLLFAGSIDGRI  130 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~---------~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i  130 (350)
                      ...|.++.++|.    +++++.|++|++|+..         +++.+..+  .|..+|.+++|+|  +++++++++.||.|
T Consensus        76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence            456777777553    8999999999999765         55545443  3567899999999  99999999999999


Q ss_pred             EEEeCCccccccccccccccceee-eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEE-EEecc-CCCceeEEE
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVL-KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSI-RRFNH-KKGVVTNLV  205 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~v~~l~  205 (350)
                      ++||++.+..          .... ..|...+++++|+|++  |++|+.||.|++||+++++.+ ..+.. |.++|++++
T Consensus       152 ~~wd~~~~~~----------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~  221 (343)
T 3lrv_A          152 GFQSYEDDSQ----------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVK  221 (343)
T ss_dssp             EEEESSSSCE----------EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEE
T ss_pred             EEEECCCCcE----------EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEE
Confidence            9999986433          1222 2455689999999999  889999999999999999877 77887 999999999


Q ss_pred             EEccCCeEEeeecCccccccccCCcc
Q 045370          206 VIRQSSLLSEVSNCQRKLKKDRMPSL  231 (350)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~~~~~~~  231 (350)
                      |+|++.+|++++.+  .+.+|++...
T Consensus       222 fs~~g~~l~s~~~~--~v~iwd~~~~  245 (343)
T 3lrv_A          222 FADNGYWMVVECDQ--TVVCFDLRKD  245 (343)
T ss_dssp             ECTTSSEEEEEESS--BEEEEETTSS
T ss_pred             EeCCCCEEEEEeCC--eEEEEEcCCC
Confidence            99999999988844  6666655443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=3.4e-25  Score=199.20  Aligned_cols=189  Identities=21%  Similarity=0.240  Sum_probs=160.2

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      +++++++|++|+.||+|++||+.                           .......+.+|...|.+++|.+ ++ ++++
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~---------------------------~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s  178 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSI---------------------------NKKFLLQLSGHDGGVWALKYAH-GG-ILVS  178 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECS-TT-EEEE
T ss_pred             EEECCCEEEEEcCCCcEEEEECC---------------------------CCcEEEEEeCCCcCEEEEEEcC-CC-EEEE
Confidence            45678899999999999999998                           4667777889999999999965 44 8999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEc--CCCcEEEEEccCCeEEEEeCCcccccccccc-------------
Q 045370           83 SSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFH--PGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV-------------  146 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------  146 (350)
                      |+.||+|++||+.+++.+..+. |...|.+++|+  +++.++++|+.||.|++||++..........             
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            9999999999999999888875 88999999998  5789999999999999999987543211100             


Q ss_pred             ccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          147 GEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .......+.+|...+.++..++..+++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++++.++
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg  332 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT  332 (464)
T ss_dssp             CTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            01124467789999999977666699999999999999999999999999999999999999999999888775

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.9e-26  Score=201.86  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=149.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccc-------cc--cEEEeeccccccceeeeccccCCceEEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQL-------DQ--RLIEMELRSLRSLLHYSLEHKSSVTGLL   71 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~   71 (350)
                      |+|||||+++||++.|++|+  |...+...    .++....       ++  ..+.+...  .........|...|.+++
T Consensus        21 v~~SpDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg~~~~~~~~~~--~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPLEFENKLDFELA--QQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECCCCCCTTTTSCC--CSSCSSTTSCSCCEEEEE
T ss_pred             EEECCCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCCCCcceEEEEeC--CCceEeecCCCCcEEEEE
Confidence            58999999999999999999  64432111    1221111       11  11111111  111111225688999999


Q ss_pred             EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCC-----ceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQ-----AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      |+| ++.+|++++.||.|++||...  ++..+.|..     .+.+++|+|+|++|++|+.||.|++||+..+......  
T Consensus        93 wSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~--  167 (588)
T 2j04_A           93 PSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE--  167 (588)
T ss_dssp             ECS-SSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC--
T ss_pred             ECC-CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc--
Confidence            966 788899999999999999654  555555444     4999999999999999999999999999864321100  


Q ss_pred             ccccceee----eccCCceEEEEecCCeEEEEeCCCcEEEEECCCceE---EEEe-ccCCCceeEEEEEccCCeEEeeec
Q 045370          147 GEDQHSVL----KGHNGSITALAFSASHLISASEDKTVCLWDVTRRVS---IRRF-NHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       147 ~~~~~~~~----~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~-~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                       -..+..+    .+|...|.+++|+|+++++++.|+.|++||+.++..   ..++ .+|...|.+++|+  ++.|++++.
T Consensus       168 -~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~  244 (588)
T 2j04_A          168 -FYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP  244 (588)
T ss_dssp             -CEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS
T ss_pred             -ceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC
Confidence             0012243    568889999999999988999999999999988773   3456 4788899999999  688887763


Q ss_pred             CccccccccCC
Q 045370          219 CQRKLKKDRMP  229 (350)
Q Consensus       219 ~~~~~~~~~~~  229 (350)
                        +.+.+|+..
T Consensus       245 --~tIkLWd~~  253 (588)
T 2j04_A          245 --GYVHKIDLK  253 (588)
T ss_dssp             --SEEEEEETT
T ss_pred             --CeEEEEECC
Confidence              455555443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2e-25  Score=196.95  Aligned_cols=186  Identities=16%  Similarity=0.239  Sum_probs=152.8

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++++..+++++.||.|++||+.+                           +....... .|...|.+++|++ ++.+|+
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~---------------------------~~~~~~~~~~~~~~v~~v~~s~-~~~~l~  150 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADS---------------------------GSVSALAETDESTYVASVKWSH-DGSFLS  150 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTT---------------------------CCEEEEEECCTTCCEEEEEECT-TSSEEE
T ss_pred             EeecCCCEEEEECCCeEEEeeCCC---------------------------CcEeEeeecCCCCCEEEEEECC-CCCEEE
Confidence            334456688899999999999983                           33333333 3889999999976 778999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +|+.||.|++||+.+++.+..+ .|...|.+++|  ++.++++++.||.|++||++..         ......+.+|...
T Consensus       151 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~  219 (401)
T 4aez_A          151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA---------NHQIGTLQGHSSE  219 (401)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS---------SCEEEEEECCSSC
T ss_pred             EECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC---------cceeeEEcCCCCC
Confidence            9999999999999999888876 58889999999  4679999999999999999842         3344577889999


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec--Ccccccccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN--CQRKLKKDR  227 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--~~~~~~~~~  227 (350)
                      |.+++|+|++  |++|+.||.|++||+++++.+..+..|...|.+++|+|++..++++++  .+..+.+|+
T Consensus       220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence            9999999998  999999999999999999999999999999999999998764444332  344444553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-25  Score=194.84  Aligned_cols=181  Identities=14%  Similarity=0.175  Sum_probs=154.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|++++|++++.||.|++||+.                           .......+. |...|.+++|++ ++.++
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~---------------------------~~~~~~~~~-~~~~v~~~~~~~-~~~~l  130 (369)
T 3zwl_B           80 IDVDCFTKYCVTGSADYSIKLWDVS---------------------------NGQCVATWK-SPVPVKRVEFSP-CGNYF  130 (369)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETT---------------------------TCCEEEEEE-CSSCEEEEEECT-TSSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEee-cCCCeEEEEEcc-CCCEE
Confidence            5799999999999999999999998                           344444444 889999999966 67889


Q ss_pred             EEEeCC-----CcEEEEeCCCCceE-----------E-EEecCC--ceeEEEEcCCCcEEEEEccCCeEEEEeCCccccc
Q 045370           81 VSSSLD-----ATCKVWDLGSGILI-----------Q-TQVYPQ--AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        81 ~s~~~d-----~~v~vwd~~~~~~~-----------~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      ++++.+     +.|.+||+..+...           . ...+..  .+.+++|+|++++|++++.||.|++||++..   
T Consensus       131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  207 (369)
T 3zwl_B          131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN---  207 (369)
T ss_dssp             EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT---
T ss_pred             EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---
Confidence            999998     99999998865321           1 123444  8999999999999999999999999999852   


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                            ......+..|...|.+++|+|++  |++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.+
T Consensus       208 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          208 ------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECC
T ss_pred             ------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecC
Confidence                  33445777899999999999998  9999999999999999999998888 77899999999999999988876


Q ss_pred             c
Q 045370          220 Q  220 (350)
Q Consensus       220 ~  220 (350)
                      +
T Consensus       281 ~  281 (369)
T 3zwl_B          281 E  281 (369)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=4.8e-26  Score=203.11  Aligned_cols=184  Identities=12%  Similarity=0.094  Sum_probs=142.5

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccc--eeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL--LHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      |+|+| ++++|+||+.||+|++||+++                           ...  ......+...+.+++|++ ++
T Consensus       170 l~f~p~~~~~l~s~s~D~~v~iwd~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~  221 (435)
T 4e54_B          170 LKFNPLNTNQFYASSMEGTTRLQDFKG---------------------------NILRVFASSDTINIWFCSLDVSA-SS  221 (435)
T ss_dssp             EEECSSCTTEEEEECSSSCEEEEETTS---------------------------CEEEEEECCSSCSCCCCCEEEET-TT
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEeeccC---------------------------CceeEEeccCCCCccEEEEEECC-CC
Confidence            57998 689999999999999999972                           211  112233445678888865 77


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      .+|++|+.||.|++||++.........|...|.+++|+|++. +|++|+.|+.|++||++......       ......+
T Consensus       222 ~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------~~~~~~~  294 (435)
T 4e54_B          222 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------SFLYSLP  294 (435)
T ss_dssp             TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------CCSBCCB
T ss_pred             CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-------eEEEeee
Confidence            899999999999999998654433356889999999999876 78899999999999998654221       2224457


Q ss_pred             cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC------ceeEEEEEccCCeEEeeecC
Q 045370          157 HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG------VVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       157 ~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~~  219 (350)
                      |...|++++|+|++  |++++.||.|+|||++++.....+..|..      .+..+.|+|++.++++++..
T Consensus       295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (435)
T 4e54_B          295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP  365 (435)
T ss_dssp             CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC
T ss_pred             ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC
Confidence            99999999999998  99999999999999999887777655432      23456788887777766543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=3.2e-25  Score=199.33  Aligned_cols=179  Identities=22%  Similarity=0.351  Sum_probs=152.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-CCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-GGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~   79 (350)
                      ++|+|++ +|++|+.||+|++||+.                           .......+.+|...|.+++|.+ +++.+
T Consensus       168 l~~~~~~-~l~s~s~dg~i~vwd~~---------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~  219 (464)
T 3v7d_B          168 LKYAHGG-ILVSGSTDRTVRVWDIK---------------------------KGCCTHVFEGHNSTVRCLDIVEYKNIKY  219 (464)
T ss_dssp             EEECSTT-EEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred             EEEcCCC-EEEEEeCCCCEEEEECC---------------------------CCcEEEEECCCCCccEEEEEecCCCCCE
Confidence            4688888 99999999999999998                           4666777889999999999986 46689


Q ss_pred             EEEEeCCCcEEEEeCCCCceEE-----------------------E-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQ-----------------------T-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~-----------------------~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                      +++|+.|++|++||+.++....                       . ..|...+.++  +++++++++++.||.|++||+
T Consensus       220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~  297 (464)
T 3v7d_B          220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV  297 (464)
T ss_dssp             EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred             EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999875321                       2 2356666665  578899999999999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      +++          ..+..+.+|...|.+++|+|++  +++|+.||.|++||+++++.+..+.+|...|.+++|+  +.+|
T Consensus       298 ~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l  365 (464)
T 3v7d_B          298 AQM----------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL  365 (464)
T ss_dssp             TTT----------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEE
T ss_pred             CCC----------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEE
Confidence            853          3445778899999999999998  9999999999999999999999999999999999997  5788


Q ss_pred             EeeecCcc
Q 045370          214 SEVSNCQR  221 (350)
Q Consensus       214 ~~~~~~~~  221 (350)
                      ++++.|+.
T Consensus       366 ~s~s~dg~  373 (464)
T 3v7d_B          366 VSAAADGS  373 (464)
T ss_dssp             EEEETTSE
T ss_pred             EEEeCCCc
Confidence            87877753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-25  Score=200.08  Aligned_cols=179  Identities=12%  Similarity=0.022  Sum_probs=144.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC-----CceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS-----SVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~   75 (350)
                      ++|||||.+||+++.||.|++||.+                            . ++..+. |..     .|.+++|+| 
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~----------------------------~-~l~~l~-~~~~~~~~sv~svafSP-  139 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDN----------------------------K-MLTNLD-SKGNLSSRTYHCFEWNP-  139 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETT----------------------------E-EEEECC-CSSCSTTTCEEEEEECS-
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCC----------------------------c-eeeecc-CCCccccccEEEEEEcC-
Confidence            5899999999999999999999976                            1 344444 554     599999966 


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCce-------EEEE-----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGIL-------IQTQ-----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~-------~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      ++.+|++|+.||+|++||+.++..       +..+     +|...|.+++|+|+|  +++++.|+.|++||+......  
T Consensus       140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--  215 (588)
T 2j04_A          140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--  215 (588)
T ss_dssp             SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--
Confidence            789999999999999999998853       4443     256799999999999  888888999999999853210  


Q ss_pred             cccccccceee-eccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE--EccCCeEEeeecC
Q 045370          144 FIVGEDQHSVL-KGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV--IRQSSLLSEVSNC  219 (350)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~~~~  219 (350)
                           .....+ .+|...|.+++|+ +. +++++ +++|++||+.+++......+|.+.|.+++|  +|++..+++++.+
T Consensus       216 -----~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed  288 (588)
T 2j04_A          216 -----PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT  288 (588)
T ss_dssp             -----CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred             -----cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence                 012245 4788999999999 44 88887 699999999998884444379999999999  9999999988866


Q ss_pred             cc
Q 045370          220 QR  221 (350)
Q Consensus       220 ~~  221 (350)
                      +.
T Consensus       289 G~  290 (588)
T 2j04_A          289 SY  290 (588)
T ss_dssp             EE
T ss_pred             CC
Confidence            65

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.9e-25  Score=200.11  Aligned_cols=191  Identities=13%  Similarity=0.152  Sum_probs=155.9

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec--cccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL--EHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~   77 (350)
                      ++|+|+|++| ++|+.||.|+|||+...                         .......+.  .|...|.+++|++ ++
T Consensus       108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B          108 LRLTSDESRLIACADSDKSLLVFDVDKT-------------------------SKNVLKLRKRFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECSS-------------------------SSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEECcCC-------------------------CCceeeeeecccCCCCceEEEEcC-CC
Confidence            4799999996 89999999999998710                         122333333  5778999999966 77


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEE----E-EecCCceeEEEEcCC---CcEEEEEccCCeEEEEeCCccccccccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQ----T-QVYPQAVTAIAFHPG---EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~----~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      .+|++|+.||.|.+|++.++....    . ..|...|.+++|+|+   +.+|++++.|+.|++||++.+.          
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----------  231 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----------  231 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----------
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----------
Confidence            899999999999999998876543    3 468899999999999   9999999999999999998543          


Q ss_pred             ccee-eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc-------------------------CCCce
Q 045370          150 QHSV-LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH-------------------------KKGVV  201 (350)
Q Consensus       150 ~~~~-~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~v  201 (350)
                      .... +.+|...|++++|+ ++  |++++.|+.|++||+++++.+..+..                         ....|
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            2223 55899999999999 77  99999999999999999998887752                         23568


Q ss_pred             eEEEEEccCCeEEeeecCccccccccC
Q 045370          202 TNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .+++|+|++++|++++..+..+.+|++
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            999999999999988855555666655

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=4.5e-25  Score=191.48  Aligned_cols=190  Identities=13%  Similarity=0.125  Sum_probs=138.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||++|++|+.|+ ++|||+.+                           .......  +...+..+.+.+....++
T Consensus        25 v~fs~dg~~la~g~~~~-~~iw~~~~---------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A           25 YEFNQDQSCLILSTLKS-FEIYNVHP---------------------------VAHIMSQ--EMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             EEECTTSSEEEEECSSE-EEEEEETT---------------------------EEEEEEE--ECSCCCEEEECTTSSEEE
T ss_pred             EEECCCCCEEEEEcCCE-EEEEecCC---------------------------cceeeee--ecCCeEEEEEcCCCCEEE
Confidence            58999999999998775 78999872                           2222221  222466777766544455


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcE-----------------------------------EEE--
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL-----------------------------------LFA--  123 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------------------------l~~--  123 (350)
                      ++++.|++|++||+.+++.+..+.+...|.+++|+++...                                   ++.  
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s  154 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN  154 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence            7788899999999999999999888899999999875311                                   111  


Q ss_pred             EccCCeEEEEeCCccccccccc-----ccccc-ceeeeccCCceEEEEecCCe--EEEEeCCCc-EEEEECCCceEEEEe
Q 045370          124 GSIDGRIFVSPLKFLLLEDHFI-----VGEDQ-HSVLKGHNGSITALAFSASH--LISASEDKT-VCLWDVTRRVSIRRF  194 (350)
Q Consensus       124 ~~~dg~i~i~d~~~~~~~~~~~-----~~~~~-~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~-v~iwd~~~~~~~~~~  194 (350)
                      |+.||.|++||+..+.......     ....+ ...+.+|...|++++|+|++  |++|+.|++ |++||+++++.+..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            2344444444444321000000     00011 56788999999999999999  999999998 999999999999999


Q ss_pred             c-c-CCCceeEEEEEccCCeEEeeecCc
Q 045370          195 N-H-KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       195 ~-~-~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      . + |...|.+++|+|++++|++++.|+
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            8 5 999999999999999999888764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=3.8e-25  Score=192.55  Aligned_cols=148  Identities=15%  Similarity=0.022  Sum_probs=117.6

Q ss_pred             ccCCceEEEEeeCCCcEEE--EEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           63 HKSSVTGLLTISGGTTFFV--SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      +...+.+++|+| ++++++  +++.|++|++||+.+++.+..+.|...|.+++|+|+|+++++++.++ +.+|+..++..
T Consensus       132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~  209 (365)
T 4h5i_A          132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC  209 (365)
T ss_dssp             TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE
T ss_pred             cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcc
Confidence            445688899866 667665  45579999999999999999999999999999999999999998655 55555553321


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCC----cEEEEECCCceE----EEEeccCCCceeEEEEEccC
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDK----TVCLWDVTRRVS----IRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg----~v~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~  210 (350)
                      .        .......|...|.+++|+|++  +++++.|+    .+++||+.....    ...+..|..+|++++|+|+|
T Consensus       210 ~--------~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          210 I--------ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             E--------EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             e--------eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            1        112345688899999999998  88888877    688999876543    34567889999999999999


Q ss_pred             CeEEeeecCc
Q 045370          211 SLLSEVSNCQ  220 (350)
Q Consensus       211 ~~l~~~~~~~  220 (350)
                      ++|++|+.|+
T Consensus       282 ~~lasgs~D~  291 (365)
T 4h5i_A          282 ELAVLASNDN  291 (365)
T ss_dssp             CEEEEEETTS
T ss_pred             CceEEEcCCC
Confidence            9999888874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=5.6e-26  Score=227.49  Aligned_cols=185  Identities=23%  Similarity=0.359  Sum_probs=158.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||+.+                           .. ......|...|.++.|++ + ..+
T Consensus      1009 l~~s~dg~~l~s~~~dg~i~vwd~~~---------------------------~~-~~~~~~~~~~v~~~~~~~-~-~~l 1058 (1249)
T 3sfz_A         1009 IQFTADGKTLISSSEDSVIQVWNWQT---------------------------GD-YVFLQAHQETVKDFRLLQ-D-SRL 1058 (1249)
T ss_dssp             EEECSSSSCEEEECSSSBEEEEETTT---------------------------TE-EECCBCCSSCEEEEEECS-S-SEE
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCC---------------------------Cc-eEEEecCCCcEEEEEEcC-C-CcE
Confidence            47999999999999999999999982                           22 234568999999999976 4 458


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++++.||.|++||+.+++....+. |...|.+++|+|++.++++++.||.|++||+.++          .....+.+|..
T Consensus      1059 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~----------~~~~~l~~h~~ 1128 (1249)
T 3sfz_A         1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL----------SPLHELKGHNG 1128 (1249)
T ss_dssp             EEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS----------SCSBCCCCCSS
T ss_pred             EEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc----------ceeeeeccCCC
Confidence            899999999999999999887765 8889999999999999999999999999999853          34457788999


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe---------ccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF---------NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .|++++|+|++  |++|+.||.|++||+.+++.+..+         ..|.+.|++++|+|++++|+++++..++|.+
T Consensus      1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~ 1205 (1249)
T 3sfz_A         1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNV 1205 (1249)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCS
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEEC
Confidence            99999999999  999999999999999998887765         5688999999999999999988754455544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=2.3e-24  Score=191.33  Aligned_cols=192  Identities=16%  Similarity=0.258  Sum_probs=139.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccccee--eeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH--YSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~   78 (350)
                      |+||++ ++||+|. |++|+|||..                           .+....  ...+|...|++++|++ ++.
T Consensus       111 l~wS~~-n~lAvgl-d~tV~lWd~~---------------------------tg~~~~~~~~~~~~~~V~sv~fsp-dg~  160 (420)
T 4gga_A          111 VDWSSG-NVLAVAL-DNSVYLWSAS---------------------------SGDILQLLQMEQPGEYISSVAWIK-EGN  160 (420)
T ss_dssp             EEECTT-SEEEEEE-TTEEEEEETT---------------------------TCCEEEEEECCSTTCCEEEEEECT-TSS
T ss_pred             EEECCC-CEEEEEe-CCEEEEEECC---------------------------CCCEEEEEEecCCCCcEEEEEECC-CCC
Confidence            578875 4777775 8999999998                           344433  3457888999999966 788


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe-cCC-----------------------------------------ceeEEEEcC
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV-YPQ-----------------------------------------AVTAIAFHP  116 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~-----------------------------------------~v~~~~~~~  116 (350)
                      +|++|+.||+|++||+.+++.+..+. |..                                         .+..+.|+|
T Consensus       161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            99999999999999999887665532 433                                         344455555


Q ss_pred             CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEE--EeCCCcEEEEECCCceEE
Q 045370          117 GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LIS--ASEDKTVCLWDVTRRVSI  191 (350)
Q Consensus       117 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s--~~~dg~v~iwd~~~~~~~  191 (350)
                      ++.++++++.|+.+++|+...+..      ..........|...|.+++|+|.+   +++  |+.|+.|++||+.+++++
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSS------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred             CCCeeeeeeccccceEEeeccccc------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence            555555555555555555553321      112334566788999999999977   444  558999999999999999


Q ss_pred             EEeccCCCceeEEEEEccCCeEEeeec-CccccccccCC
Q 045370          192 RRFNHKKGVVTNLVVIRQSSLLSEVSN-CQRKLKKDRMP  229 (350)
Q Consensus       192 ~~~~~~~~~v~~l~~~~~~~~l~~~~~-~~~~~~~~~~~  229 (350)
                      ..+.. ...+.++.|+|+++.++++++ .+..+.+|+..
T Consensus       315 ~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          315 SAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             EEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             eeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            98885 467899999999998887764 34555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=4.8e-25  Score=211.61  Aligned_cols=182  Identities=20%  Similarity=0.246  Sum_probs=158.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++|++|+.||.|++||+.                           .+.....+.+|...|.+++|++ ++.++
T Consensus        61 ~~~s~~~~~l~~~~~dg~i~vw~~~---------------------------~~~~~~~~~~~~~~v~~~~~s~-~~~~l  112 (814)
T 3mkq_A           61 GKFIARKNWIIVGSDDFRIRVFNYN---------------------------TGEKVVDFEAHPDYIRSIAVHP-TKPYV  112 (814)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCSSCEEEEEECS-SSSEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEecCCCCEEEEEEeC-CCCEE
Confidence            4799999999999999999999998                           4666777788999999999966 67889


Q ss_pred             EEEeCCCcEEEEeCCCC-ceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccceeeec-
Q 045370           81 VSSSLDATCKVWDLGSG-ILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG-  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-  156 (350)
                      ++++.||.|++||+.++ .....+ .|...|.+++|+| ++..|++++.||.|++||+....          ....+.. 
T Consensus       113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----------~~~~~~~~  182 (814)
T 3mkq_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----------PNFTLTTG  182 (814)
T ss_dssp             EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----------CSEEEECC
T ss_pred             EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------ceeEEecC
Confidence            99999999999999987 444444 4888999999999 88999999999999999997432          2224444 


Q ss_pred             cCCceEEEEecC--Ce--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          157 HNGSITALAFSA--SH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       157 ~~~~i~~~~~~~--~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +...+.+++|+|  ++  +++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.++
T Consensus       183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            448899999998  76  99999999999999999999999999999999999999999999888765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.6e-25  Score=185.59  Aligned_cols=201  Identities=21%  Similarity=0.229  Sum_probs=155.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccc----------------ccccccE--EEeeccccccceeeecc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHS----------------DQLDQRL--IEMELRSLRSLLHYSLE   62 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~~~~~~~~   62 (350)
                      |+| |++++|++|+.||.|++||+.+.........+..                ...++.+  +.+...........+.+
T Consensus        24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  102 (313)
T 3odt_A           24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG  102 (313)
T ss_dssp             EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred             EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence            467 8999999999999999999975432221111110                0112222  22322333355667788


Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCcccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      |...|.++.|   ++.++++++.|+.|++||  .+.....+ .|...+.+++|.| ++.++++++.||.|++||...   
T Consensus       103 ~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---  174 (313)
T 3odt_A          103 HQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---  174 (313)
T ss_dssp             CSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---
T ss_pred             cccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---
Confidence            9999999998   356899999999999999  55555554 5888999999998 899999999999999999442   


Q ss_pred             ccccccccccceeeec-cCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          141 EDHFIVGEDQHSVLKG-HNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                               ....+.. |...+.+++|+|++ +++++.||.|++||+++++.+..+..|..+|.+++|+|++. |++++.
T Consensus       175 ---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~  244 (313)
T 3odt_A          175 ---------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE  244 (313)
T ss_dssp             ---------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEET
T ss_pred             ---------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEec
Confidence                     1224444 88999999999999 99999999999999999999999999999999999999994 666666


Q ss_pred             Cc
Q 045370          219 CQ  220 (350)
Q Consensus       219 ~~  220 (350)
                      ++
T Consensus       245 dg  246 (313)
T 3odt_A          245 DR  246 (313)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.8e-26  Score=201.79  Aligned_cols=191  Identities=11%  Similarity=0.200  Sum_probs=152.2

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc--ccCCceEEEEeeCCCcEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE--HKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l   80 (350)
                      +++++.+|++|+.||.|++||+.                           ....+..+..  |...|.+++|++ ++.+|
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~---------------------------~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l  229 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIR---------------------------TLERLQIIENSPRHGAVSSICIDE-ECCVL  229 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCGGGCCEEEEEECT-TSCEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCC---------------------------CCeeeEEEccCCCCCceEEEEECC-CCCEE
Confidence            56889999999999999999998                           4556666666  899999999966 68899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcC----CCcEEEEEccCCeEEEEeCCccccccccccccccc---
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHP----GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH---  151 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---  151 (350)
                      ++|+.||.|++||+++++.+..+  .|..+|.+++|+|    ++.+|++|+.||.|++||++++.............   
T Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME  309 (437)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred             EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence            99999999999999999988876  5677899997665    67799999999999999998766433221111000   


Q ss_pred             -----------eeeec--cCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc---------------------
Q 045370          152 -----------SVLKG--HNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH---------------------  196 (350)
Q Consensus       152 -----------~~~~~--~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~---------------------  196 (350)
                                 ..+.+  |...|++++|++.. |++|+.||.|++||+.+++.+..+.+                     
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (437)
T 3gre_A          310 HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL  389 (437)
T ss_dssp             GGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE
T ss_pred             eecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE
Confidence                       01233  88889999999555 99999999999999998876666654                     


Q ss_pred             ----------------CCCceeEEEEEcc--CCeEEeeecCcc
Q 045370          197 ----------------KKGVVTNLVVIRQ--SSLLSEVSNCQR  221 (350)
Q Consensus       197 ----------------~~~~v~~l~~~~~--~~~l~~~~~~~~  221 (350)
                                      |...|.+++|+++  +.+|++++.++.
T Consensus       390 ~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          390 RKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence                            7788999999988  668887776653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.8e-26  Score=201.01  Aligned_cols=177  Identities=12%  Similarity=0.104  Sum_probs=121.4

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee-------C
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS-------G   75 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~   75 (350)
                      +++++.+|++|+.|++|+|||.......                      ....+..+.+|.+.|.+++|+|       .
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~  154 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHHNFVNDIDIADVYSADNRL  154 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCCCceEEEEEccccccccCC
Confidence            4567789999999999999998731100                      1123445689999999999976       2


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEE-EEecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCcccccccccc-------
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQ-TQVYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIV-------  146 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------  146 (350)
                      ++++|++|+.|++|+|||+.++.... .+.|..++.+++|+|++. +|++++.||.|++||++++........       
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            56899999999999999998776554 467999999999999874 899999999999999987653321100       


Q ss_pred             --------ccccceeeeccCCceEEEEec-CCe--EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370          147 --------GEDQHSVLKGHNGSITALAFS-ASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVV  201 (350)
Q Consensus       147 --------~~~~~~~~~~~~~~i~~~~~~-~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  201 (350)
                              .........+|...+.++.|+ |++  +++++.|+.+++||+.+++....+..|...+
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~  300 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL  300 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence                    001111335688899999987 676  9999999999999999877666665444333

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.4e-25  Score=211.45  Aligned_cols=197  Identities=17%  Similarity=0.193  Sum_probs=159.2

Q ss_pred             CeecCC--CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-C
Q 045370            1 MVFSDD--GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-T   77 (350)
Q Consensus         1 i~~s~d--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~   77 (350)
                      |+|+|+  +++|++|+.||.|++||+.++                         .........+|...|.+++|+|.. +
T Consensus        59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-------------------------~~~~~~~~~~h~~~V~~v~~sp~~~~  113 (753)
T 3jro_A           59 VDWAHPKFGTILASCSYDGKVLIWKEENG-------------------------RWSQIAVHAVHSASVNSVQWAPHEYG  113 (753)
T ss_dssp             EEECCTTSCSEEEEEETTSCEEEEEEETT-------------------------EEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EEecCCCCCCEEEEEeCCCeEEEEECCCC-------------------------cccccccccCCCCCeEEEEECCCCCC
Confidence            478888  999999999999999999821                         112556678899999999997742 7


Q ss_pred             cEEEEEeCCCcEEEEeCCCCc---eEEEEecCCceeEEEEcC-------------CCcEEEEEccCCeEEEEeCCccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGI---LIQTQVYPQAVTAIAFHP-------------GEQLLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                      .++++|+.||.|++||+.++.   ......|...|.+++|+|             ++.++++|+.||.|++||++.....
T Consensus       114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~  193 (753)
T 3jro_A          114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  193 (753)
T ss_dssp             SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE
T ss_pred             CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc
Confidence            899999999999999998873   233346889999999999             5899999999999999999864221


Q ss_pred             cccccccccceeeeccCCceEEEEecCC---e--EEEEeCCCcEEEEECCCce-----EEEEeccCCCceeEEEEEccCC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSAS---H--LISASEDKTVCLWDVTRRV-----SIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~--l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                            ......+.+|...|++++|+|+   +  +++|+.||.|++||++++.     .+.....|...|++++|+|+++
T Consensus       194 ------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~  267 (753)
T 3jro_A          194 ------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (753)
T ss_dssp             ------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC
T ss_pred             ------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC
Confidence                  1233467789999999999999   6  9999999999999999864     3333445888999999999999


Q ss_pred             eEEeeecCccccccccCC
Q 045370          212 LLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       212 ~l~~~~~~~~~~~~~~~~  229 (350)
                      ++++++.++. +.+|++.
T Consensus       268 ~l~s~s~Dg~-I~vwd~~  284 (753)
T 3jro_A          268 VLALSGGDNK-VTLWKEN  284 (753)
T ss_dssp             CEEEECSSSC-EECCBCC
T ss_pred             EEEEEcCCCE-EEEEecC
Confidence            9998887653 4455443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=2.3e-24  Score=190.00  Aligned_cols=199  Identities=17%  Similarity=0.161  Sum_probs=156.1

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC--C
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG--T   77 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~   77 (350)
                      ++|+| ++.+|++|+.||.|++||+.+                           ...... ..+...+.++.+.+..  +
T Consensus       105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B          105 VQWYPHDTGMFTSSSFDKTLKVWDTNT---------------------------LQTADV-FNFEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             EEECTTCTTCEEEEETTSEEEEEETTT---------------------------TEEEEE-EECSSCEEEEEECSSCSSC
T ss_pred             EEEccCCCcEEEEEeCCCeEEEeeCCC---------------------------Ccccee-ccCCCceeeeEeecCCCCC
Confidence            47899 778999999999999999982                           333333 3477889999887643  3


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccc------cccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFI------VGED  149 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~  149 (350)
                      .++++++.|+.|++||+.+++.+..+. |...|.+++|+|++. .+++++.||.|++||++.........      ....
T Consensus       157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence            489999999999999999998887765 888999999999998 58899999999999998654211100      1111


Q ss_pred             cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc---------------------------------------
Q 045370          150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR---------------------------------------  188 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~---------------------------------------  188 (350)
                      .......|...|.+++|+|++  |++++.||.|++||++++                                       
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence            222346789999999999998  999999999999998754                                       


Q ss_pred             --------eEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          189 --------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       189 --------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                              +.+..+.+|...|++++|+|++++|++++.|+. +.+|++
T Consensus       317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~  363 (408)
T 4a11_B          317 AVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVP  363 (408)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEEE
T ss_pred             EEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCe-EEEEeC
Confidence                    445666778899999999999999998877653 334433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=1.5e-25  Score=193.13  Aligned_cols=187  Identities=11%  Similarity=0.056  Sum_probs=155.3

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeC-ccccccccccccccccccccEEEeeccccccceeeecc--ccCCceEEEEeeCC
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSM-TRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE--HKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~   76 (350)
                      ++|+|+++ +|++|+.||.|++||+ .                            ......+.+  |...|.+++|++  
T Consensus        62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~----------------------------~~~~~~~~~~~~~~~v~~l~~~~--  111 (342)
T 1yfq_A           62 CNFIDNTDLQIYVGTVQGEILKVDLIG----------------------------SPSFQALTNNEANLGICRICKYG--  111 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSS----------------------------SSSEEECBSCCCCSCEEEEEEET--
T ss_pred             EEECCCCCcEEEEEcCCCeEEEEEecc----------------------------CCceEeccccCCCCceEEEEeCC--
Confidence            57999999 9999999999999999 7                            223355667  999999999977  


Q ss_pred             CcEEEEEeCCCcEEEEeCCC---------CceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc-ccccccccc
Q 045370           77 TTFFVSSSLDATCKVWDLGS---------GILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF-LLLEDHFIV  146 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~  146 (350)
                      +.++++++.|+.|++||+.+         ++++..+.+...+.+++|+|++  +++++.|+.|++||++. +..      
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~------  183 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD------  183 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC------
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc------
Confidence            67899999999999999987         7666667788999999999887  99999999999999985 321      


Q ss_pred             ccccceeeeccCCceEEEEecC-Ce--EEEEeCCCcEEEEECCCc------eEEEEeccCCC---------ceeEEEEEc
Q 045370          147 GEDQHSVLKGHNGSITALAFSA-SH--LISASEDKTVCLWDVTRR------VSIRRFNHKKG---------VVTNLVVIR  208 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~---------~v~~l~~~~  208 (350)
                        ........|...+.+++|+| ++  +++++.||.|++||++..      +....+..|..         +|.+++|+|
T Consensus       184 --~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  261 (342)
T 1yfq_A          184 --NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             --CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred             --cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence              11224446788999999999 77  999999999999999886      67777777755         999999999


Q ss_pred             cCCeEEeeecCccccccccC
Q 045370          209 QSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ++++|++++.++. +.+|+.
T Consensus       262 ~~~~l~~~~~dg~-i~vwd~  280 (342)
T 1yfq_A          262 RHKFLYTAGSDGI-ISCWNL  280 (342)
T ss_dssp             TTCCEEEEETTSC-EEEEET
T ss_pred             CCCEEEEecCCce-EEEEcC
Confidence            9999998887653 334433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=8.4e-25  Score=203.23  Aligned_cols=180  Identities=12%  Similarity=0.094  Sum_probs=156.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccc----cceeeeccccCC-ceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLR----SLLHYSLEHKSS-VTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~-v~~~~~~~~   75 (350)
                      ++|+|||++|++++ ++.|++||+.                           ..    .....+.+|... |.+++|+|.
T Consensus        24 ~~~spdg~~l~~~~-~~~v~v~~~~---------------------------~~~~~~~~~~~~~~h~~~~v~~~~~sp~   75 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GKSAFVRCLD---------------------------DGDSKVPPVVQFTGHGSSVVTTVKFSPI   75 (615)
T ss_dssp             CEEETTTTEEEEEE-TTEEEEEECC---------------------------SSCCSSCSEEEECTTTTSCEEEEEECSS
T ss_pred             EEECCCCCEEEEec-CCeEEEEECC---------------------------CCCCccccceEEecCCCceEEEEEECcC
Confidence            68999999999998 8899999998                           34    567778899999 999999652


Q ss_pred             -CCcEEEEEeCCCcEEEEeCCCC--------ceEEEEe-cCCceeEEEEcCCCcEEEEEccC----CeEEEEeCCccccc
Q 045370           76 -GTTFFVSSSLDATCKVWDLGSG--------ILIQTQV-YPQAVTAIAFHPGEQLLFAGSID----GRIFVSPLKFLLLE  141 (350)
Q Consensus        76 -~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~  141 (350)
                       ++.+|++|+.||.|++||+.++        .....+. |...|.+++|+|++++|++++.+    +.|++||..     
T Consensus        76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~-----  150 (615)
T 1pgu_A           76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-----  150 (615)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-----
T ss_pred             CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-----
Confidence             6789999999999999999755        4444444 88899999999999999999987    799999843     


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCC---ceeEEEEEcc-CCeEE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKG---VVTNLVVIRQ-SSLLS  214 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~  214 (350)
                             .....+.+|...|.+++|+|++   +++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +++|+
T Consensus       151 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (615)
T 1pgu_A          151 -------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  223 (615)
T ss_dssp             -------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             -------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence                   2334677899999999999997   99999999999999999999999999998   9999999999 99999


Q ss_pred             eeecCc
Q 045370          215 EVSNCQ  220 (350)
Q Consensus       215 ~~~~~~  220 (350)
                      +++.++
T Consensus       224 ~~~~dg  229 (615)
T 1pgu_A          224 TVGSDR  229 (615)
T ss_dssp             EEETTC
T ss_pred             EEeCCC
Confidence            888764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=7e-24  Score=180.74  Aligned_cols=192  Identities=16%  Similarity=0.239  Sum_probs=149.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~   78 (350)
                      |+||+++ +||+| .|++|+|||+.                           .+.....  ..+|...|.+++|++ +++
T Consensus        31 l~WS~~~-~lAvg-~D~tV~iWd~~---------------------------tg~~~~~~~~~~~~~~V~~v~~~~-~~~   80 (318)
T 4ggc_A           31 VDWSSGN-VLAVA-LDNSVYLWSAS---------------------------SGDILQLLQMEQPGEYISSVAWIK-EGN   80 (318)
T ss_dssp             EEECTTS-EEEEE-ETTEEEEEETT---------------------------TCCEEEEEECCSTTCCEEEEEECT-TSS
T ss_pred             EEECCCC-EEEEE-eCCEEEEEECC---------------------------CCCEEEEEEecCCCCeEEEEEECC-CCC
Confidence            5799886 77766 59999999998                           3444443  357888999999966 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe------------------------------------------cCCceeEEEEcC
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV------------------------------------------YPQAVTAIAFHP  116 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~------------------------------------------~~~~v~~~~~~~  116 (350)
                      ++++|+.||+|++||+.+++.+..+.                                          |...+..+.+++
T Consensus        81 ~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            99999999999999999876654421                                          335678888999


Q ss_pred             CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEECCCceEE
Q 045370          117 GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDVTRRVSI  191 (350)
Q Consensus       117 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~~~~  191 (350)
                      ++.++++++.||.|++||++++...      .........|...|.++.++|.+     +++++.++.|++||.......
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTB------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             CCCEEEEEecCcceeEEECCCCccc------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            9999999999999999999865432      12233556788899999999876     456778999999999998877


Q ss_pred             EEeccCCCceeEEEEEccCCeEEeeec-CccccccccCC
Q 045370          192 RRFNHKKGVVTNLVVIRQSSLLSEVSN-CQRKLKKDRMP  229 (350)
Q Consensus       192 ~~~~~~~~~v~~l~~~~~~~~l~~~~~-~~~~~~~~~~~  229 (350)
                      .... +...+..+.|+|++..++++++ .+..+.+|+..
T Consensus       235 ~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          235 SAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             EEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            7665 6778999999999998887654 34555566543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=3.5e-25  Score=197.93  Aligned_cols=212  Identities=16%  Similarity=0.213  Sum_probs=149.5

Q ss_pred             CeecCCC--CEEEEEeCCCcEEEEeCcccccccccccccc--c---------cccccEEEe-eccccccce-eeeccccC
Q 045370            1 MVFSDDG--FLLISGSDDGMICVWSMTRLLKQTSELMHHS--D---------QLDQRLIEM-ELRSLRSLL-HYSLEHKS   65 (350)
Q Consensus         1 i~~s~dg--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~--~---------~~~~~~~~~-~~~~~~~~~-~~~~~h~~   65 (350)
                      |+|+|++  .+|++|+.||+|++||+..............  +         ...-..... ......... ....+|..
T Consensus        99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B           99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            4799998  7999999999999999985332111000000  0         000000000 000001111 22468999


Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCC-CceEEEE--------ecCCceeEEEEcCCC-cEEEEEccCCeEEEEeC
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGS-GILIQTQ--------VYPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~--------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~  135 (350)
                      .|.+++|++ ++.+|++| .|+.|++||+.+ +.....+        .|...|.+++|+|++ .+|++|+.||.|++||+
T Consensus       179 ~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          179 HINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             CCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            999999976 67889998 799999999994 4444433        478889999999998 99999999999999999


Q ss_pred             CccccccccccccccceeeeccCC------------ceEEEEecCCe--EEEEeCCCcEEEEECCC-ceEEEEeccCCCc
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNG------------SITALAFSASH--LISASEDKTVCLWDVTR-RVSIRRFNHKKGV  200 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~--l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~  200 (350)
                      +.+....      .....+..|..            .|.+++|+|++  |++++. +.|++||+++ ++++..+..|...
T Consensus       257 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          257 RASALCD------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             TTCSSSC------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred             cCCcccc------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccc
Confidence            9654311      11234555554            99999999998  888887 9999999997 8888888877542


Q ss_pred             ---------------eeEEEEEccCCeEEeeecCcc
Q 045370          201 ---------------VTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       201 ---------------v~~l~~~~~~~~l~~~~~~~~  221 (350)
                                     +..++|+|++++|++++.++.
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence                           234999999999998877653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8.7e-25  Score=195.84  Aligned_cols=152  Identities=14%  Similarity=0.191  Sum_probs=129.4

Q ss_pred             ccccCCceEEEEeeCCCcE-EEEEeCCCcEEEEeCC--CCceEEEE---ecCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370           61 LEHKSSVTGLLTISGGTTF-FVSSSLDATCKVWDLG--SGILIQTQ---VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP  134 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~-l~s~~~d~~v~vwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  134 (350)
                      ..|...|.+++|++ ++.+ +++|+.||.|++||+.  ++..+..+   .+...|.+++|+|++.+|++|+.+|.|++|+
T Consensus        99 ~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             -CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            46778899999977 5566 5899999999999999  88777775   5678999999999999999999999999999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCC---e--EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEc
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS---H--LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIR  208 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~--l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~  208 (350)
                      +.......      .....+.+|...|++++|+|+   +  |++|+.|+.|++||+++++.+.. +.+|...|.+++|+ 
T Consensus       178 ~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-  250 (450)
T 2vdu_B          178 INSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-  250 (450)
T ss_dssp             TTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred             cCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence            98543211      023366789999999999999   6  99999999999999999988877 55899999999999 


Q ss_pred             cCCeEEeeecCc
Q 045370          209 QSSLLSEVSNCQ  220 (350)
Q Consensus       209 ~~~~l~~~~~~~  220 (350)
                      ++++|++++.++
T Consensus       251 d~~~l~s~~~d~  262 (450)
T 2vdu_B          251 KDYLLLSAGGDD  262 (450)
T ss_dssp             STTEEEEEESSS
T ss_pred             CCCEEEEEeCCC
Confidence            999999888764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-25  Score=214.39  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=150.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|||++|+||+.||+|++||+..+.....           ..+.....   .  ....+|...|.+++|+| ++.+|
T Consensus       441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-----------~~~~~~l~---~--~~~~~h~~~V~svafsp-dg~~L  503 (902)
T 2oaj_A          441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-----------ASFEVNLS---R--TLNKAKELAVDKISFAA-ETLEL  503 (902)
T ss_dssp             CCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----------BCEEEEHH---H--HTTCSSSCCEEEEEEET-TTTEE
T ss_pred             ccccccCcEEEEecCCCcEEEEECCCccccCC-----------ceEEeech---h--hcCCCCCCceeEEEecC-CCCeE
Confidence            47899999999999999999999984311000           00000000   0  00127999999999976 77899


Q ss_pred             EEEeCCCcEEEEeCCCCc---------------------------------------------eEEEE-ecCCceeEEEE
Q 045370           81 VSSSLDATCKVWDLGSGI---------------------------------------------LIQTQ-VYPQAVTAIAF  114 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~---------------------------------------------~~~~~-~~~~~v~~~~~  114 (350)
                      |+|+.||+|++||+.+++                                             ++..+ .|.+.|++++|
T Consensus       504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf  583 (902)
T 2oaj_A          504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN  583 (902)
T ss_dssp             EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred             EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence            999999999999998662                                             23444 38899999999


Q ss_pred             cCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee-ccCCceEEEEec-----CC---e--EEEEeCCCcEEEE
Q 045370          115 HPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK-GHNGSITALAFS-----AS---H--LISASEDKTVCLW  183 (350)
Q Consensus       115 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-----~~---~--l~s~~~dg~v~iw  183 (350)
                      +|+| +|++|+.|+.|++||++.......     .....+. +|...|++++|+     |+   +  |++|+.|++|++|
T Consensus       584 SpdG-~lAsgs~D~tv~lwd~~~~~~~~~-----~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          584 SNIG-FVGIAYAAGSLMLIDRRGPAIIYM-----ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITY  657 (902)
T ss_dssp             CBTS-EEEEEETTSEEEEEETTTTEEEEE-----EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEE
T ss_pred             cCCc-EEEEEeCCCcEEEEECCCCeEEEE-----eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEE
Confidence            9999 999999999999999875433211     0112454 899999999999     87   3  9999999999999


Q ss_pred             EC---CCceEEEEeccC-----CCceeEEE-EE----------------------ccCCeEEeeecCccccccc
Q 045370          184 DV---TRRVSIRRFNHK-----KGVVTNLV-VI----------------------RQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       184 d~---~~~~~~~~~~~~-----~~~v~~l~-~~----------------------~~~~~l~~~~~~~~~~~~~  226 (350)
                      |+   .+|+.+..+.+|     .++|.+++ |+                      +++.+|+++....++|...
T Consensus       658 d~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~  731 (902)
T 2oaj_A          658 KILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLG  731 (902)
T ss_dssp             EEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTT
T ss_pred             EEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCc
Confidence            99   788888777655     47788877 76                      5666777664445566554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=4.7e-24  Score=190.26  Aligned_cols=178  Identities=24%  Similarity=0.341  Sum_probs=151.3

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ++++++++|++|+.||.|++||+.                           .......+.+|...|.++.|   ++.+++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~---------------------------~~~~~~~~~~h~~~v~~l~~---~~~~l~  187 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKN---------------------------TLECKRILTGHTGSVLCLQY---DERVII  187 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESS---------------------------SCCEEEEECCCSSCEEEEEC---CSSEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCC---------------------------CCeEEEEEcCCCCcEEEEEE---CCCEEE
Confidence            467799999999999999999998                           46667778899999999988   567899


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +|+.||+|++||+.+++.+..+. |...|.+++|+  +..+++|+.||.|++||+......       .....+.+|...
T Consensus       188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~  258 (435)
T 1p22_A          188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAA  258 (435)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSC
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc-------eeeeEecCCCCc
Confidence            99999999999999999888764 88899999996  469999999999999999854321       112366788999


Q ss_pred             eEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          161 ITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       161 i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      |.++.+.+..+++|+.||.|++||+++++.+..+..|...|.++.|  ++.++++++.++
T Consensus       259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg  316 (435)
T 1p22_A          259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  316 (435)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             EEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            9999996666999999999999999999999999989999999888  467888777664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=6.4e-24  Score=189.90  Aligned_cols=210  Identities=24%  Similarity=0.310  Sum_probs=160.3

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccc--------------cccccccEEEeeccccccceeeeccccCCc
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHH--------------SDQLDQRLIEMELRSLRSLLHYSLEHKSSV   67 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v   67 (350)
                      +|+  +++|++|+.||.|++||+.+.........+.              +...++.+..++.. ....+..+.+|...|
T Consensus       206 ~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v  282 (445)
T 2ovr_B          206 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE-TETCLHTLQGHTNRV  282 (445)
T ss_dssp             EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG-GTEEEEEECCCSSCE
T ss_pred             Eec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECC-CCcEeEEecCCCCce
Confidence            453  5679999999999999998643322111110              11123333333332 345666778899999


Q ss_pred             eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           68 TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .++.|   ++.++++|+.|+.|++||+.+++.+..+. |...+.++.+  +++++++|+.||.|++||++++.       
T Consensus       283 ~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~-------  350 (445)
T 2ovr_B          283 YSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQ-------  350 (445)
T ss_dssp             EEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-------
T ss_pred             EEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCc-------
Confidence            99998   56789999999999999999999888764 7777888777  46799999999999999998543       


Q ss_pred             ccccceeeec---cCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEe-----ccCCCceeEEEEEccCCeEEeeec
Q 045370          147 GEDQHSVLKG---HNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRF-----NHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       147 ~~~~~~~~~~---~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                         ....+..   |...|++++|+++.+++|+.||.|++||+.+++.+..+     ..|.+.|.+++|+|++.++++++.
T Consensus       351 ---~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~  427 (445)
T 2ovr_B          351 ---CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  427 (445)
T ss_dssp             ---EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             ---EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc
Confidence               2334444   88999999998877999999999999999999998888     467889999999999999998888


Q ss_pred             Ccc---ccccccCC
Q 045370          219 CQR---KLKKDRMP  229 (350)
Q Consensus       219 ~~~---~~~~~~~~  229 (350)
                      ++.   .+.++++.
T Consensus       428 dg~~~~~l~v~df~  441 (445)
T 2ovr_B          428 NGTEETKLLVLDFD  441 (445)
T ss_dssp             SSSSCCEEEEEECC
T ss_pred             CCCCccEEEEEECC
Confidence            764   34444443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=1.3e-23  Score=187.99  Aligned_cols=175  Identities=23%  Similarity=0.309  Sum_probs=149.2

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++++|++|++|+.||+|++||+.                           .......+.+|...|.++.|.   +.+++
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~---------------------------~~~~~~~~~~h~~~v~~~~~~---~~~l~  173 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAV---------------------------TGKCLRTLVGHTGGVWSSQMR---DNIII  173 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETT---------------------------TCCEEEECCCCSSCEEEEEEE---TTEEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECC---------------------------CCcEEEEEcCCCCCEEEEEec---CCEEE
Confidence            467789999999999999999998                           466677788999999999985   46899


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +|+.||+|++||+.+++.+..+. |...|.++.|+  +..+++|+.||.|++||+.++          .....+.+|...
T Consensus       174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~  241 (445)
T 2ovr_B          174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG----------QCLHVLMGHVAA  241 (445)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC----------CEEEEEECCSSC
T ss_pred             EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC----------cEEEEEcCCccc
Confidence            99999999999999998887764 88889999995  578999999999999999853          344467788899


Q ss_pred             eEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          161 ITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       161 i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      |.++.+.+..+++|+.||.|++||+++++.+..+..|...|.+++|  ++.++++++.++
T Consensus       242 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~  299 (445)
T 2ovr_B          242 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT  299 (445)
T ss_dssp             EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred             EEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence            9999995555999999999999999999999998888889999888  788888777664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=1.8e-23  Score=186.39  Aligned_cols=174  Identities=23%  Similarity=0.341  Sum_probs=151.9

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      +..++++|++|+.||+|++||+.                           .......+.+|...|.++.|.   +.++++
T Consensus       179 l~~~~~~l~sg~~dg~i~vwd~~---------------------------~~~~~~~~~~h~~~v~~l~~~---~~~l~s  228 (435)
T 1p22_A          179 LQYDERVIITGSSDSTVRVWDVN---------------------------TGEMLNTLIHHCEAVLHLRFN---NGMMVT  228 (435)
T ss_dssp             EECCSSEEEEEETTSCEEEEESS---------------------------SCCEEEEECCCCSCEEEEECC---TTEEEE
T ss_pred             EEECCCEEEEEcCCCeEEEEECC---------------------------CCcEEEEEcCCCCcEEEEEEc---CCEEEE
Confidence            34488999999999999999998                           466677788999999999984   358999


Q ss_pred             EeCCCcEEEEeCCCCceEE---E-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           83 SSLDATCKVWDLGSGILIQ---T-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      |+.||.|++||+.++....   . ..|...|.+++|  +++++++|+.||.|++||++++          .....+.+|.
T Consensus       229 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~  296 (435)
T 1p22_A          229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----------EFVRTLNGHK  296 (435)
T ss_dssp             EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----------CEEEEEECCS
T ss_pred             eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----------cEEEEEcCCC
Confidence            9999999999999876542   2 358889999999  7889999999999999999853          4445778899


Q ss_pred             CceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..|.++.+++..+++|+.||.|++||+++++.+..+.+|...|.+++|  ++.+|++++.++
T Consensus       297 ~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg  356 (435)
T 1p22_A          297 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG  356 (435)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred             CcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCC
Confidence            999999998777999999999999999999999999999999999999  788999888775

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.8e-23  Score=194.32  Aligned_cols=187  Identities=15%  Similarity=0.149  Sum_probs=155.0

Q ss_pred             CeecC--CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSD--DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~--dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|  ++++|++|+.||.|++||+.++.....                   ........+..|...|.+++|++ ++.
T Consensus        70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~-~~~  129 (615)
T 1pgu_A           70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-------------------VEVNVKSEFQVLAGPISDISWDF-EGR  129 (615)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-------------------EEEEEEEEEECCSSCEEEEEECT-TSS
T ss_pred             EEECcCCCCCEEEEecCCCEEEEEeCCCCccccc-------------------ccccccchhhcccccEEEEEEeC-CCC
Confidence            57999  999999999999999999962100000                   01244556678999999999966 778


Q ss_pred             EEEEEeCC----CcEEEEeCCCCceEEE-EecCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           79 FFVSSSLD----ATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        79 ~l~s~~~d----~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++++++.+    +.|.+||  .++.+.. ..|...|.+++|+|++. .+++++.||.|++||+..+          ....
T Consensus       130 ~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----------~~~~  197 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----------KFSA  197 (615)
T ss_dssp             EEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----------EEEE
T ss_pred             EEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----------ceee
Confidence            89999887    6889998  4555555 45888999999999998 8999999999999998843          3344


Q ss_pred             eeeccCC---ceEEEEecCC-e--EEEEeCCCcEEEEECCCceEEEEe-c---cCCCceeEEEEEccCCeEEeeecCc
Q 045370          153 VLKGHNG---SITALAFSAS-H--LISASEDKTVCLWDVTRRVSIRRF-N---HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       153 ~~~~~~~---~i~~~~~~~~-~--l~s~~~dg~v~iwd~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+.+|..   .|++++|+|+ +  |++++.||.|++||+++++.+..+ .   .|..+|.+++|+ ++++|++++.++
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            6778888   9999999999 7  999999999999999999999999 5   799999999999 999999888764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=6.8e-23  Score=176.39  Aligned_cols=176  Identities=19%  Similarity=0.187  Sum_probs=131.0

Q ss_pred             CeecC--CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC-C
Q 045370            1 MVFSD--DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG-T   77 (350)
Q Consensus         1 i~~s~--dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~   77 (350)
                      |+|+|  |+++|++|+.||.|++||+........                  .........+..|...|.+++|++.. +
T Consensus        63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~  124 (351)
T 3f3f_A           63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECS------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG  124 (351)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS------------------SCSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc------------------ccCcceeeeecccCCceeEEEEcCCCCC
Confidence            47888  699999999999999999984211100                  00113456667899999999987632 6


Q ss_pred             cEEEEEeCCCcEEEEeCCCCce----------------------------------------------------------
Q 045370           78 TFFVSSSLDATCKVWDLGSGIL----------------------------------------------------------   99 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~----------------------------------------------------------   99 (350)
                      .++++++.||.|++||+.+++.                                                          
T Consensus       125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~  204 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL  204 (351)
T ss_dssp             SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred             cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence            7899999999999999865431                                                          


Q ss_pred             --EEEE-ecCCceeEEEEcCCC----cEEEEEccCCeEEEEeCCccccccc-----------------------------
Q 045370          100 --IQTQ-VYPQAVTAIAFHPGE----QLLFAGSIDGRIFVSPLKFLLLEDH-----------------------------  143 (350)
Q Consensus       100 --~~~~-~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------  143 (350)
                        ...+ .|...|.+++|+|++    .+|++++.||.|++||++.......                             
T Consensus       205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3f3f_A          205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT  284 (351)
T ss_dssp             EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence              1111 367789999999998    8999999999999999986421110                             


Q ss_pred             -------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370          144 -------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       144 -------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                             .......+..+.+|...|++++|+|++  |++|+.||.|++||+.+++.+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                   000124455677899999999999998  999999999999999987544433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=3.7e-22  Score=175.31  Aligned_cols=187  Identities=12%  Similarity=0.124  Sum_probs=147.3

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|++| ++++.|+.|++||+.                           .......+..+. .+.+++|++.+..+
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~---------------------------~~~~~~~~~~~~-~v~~~~~spdg~~l   88 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTA---------------------------TNNVIATVPAGS-SPQGVAVSPDGKQV   88 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETT---------------------------TTEEEEEEECSS-SEEEEEECTTSSEE
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECC---------------------------CCeEEEEEECCC-CccceEECCCCCEE
Confidence            4799999976 677799999999998                           344444444444 89999997744444


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEE-EEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL-FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++++.++.|++||+.+++.+..+.+...+.+++|+|+++.+ ++++.++.|++||+.++..          ...+..+ 
T Consensus        89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----------~~~~~~~-  157 (391)
T 1l0q_A           89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----------INTVSVG-  157 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------EEEEECC-
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----------EEEEecC-
Confidence            456667899999999999998888888889999999999977 6788899999999985432          2234444 


Q ss_pred             CceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec--Ccccccccc
Q 045370          159 GSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN--CQRKLKKDR  227 (350)
Q Consensus       159 ~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--~~~~~~~~~  227 (350)
                      ..+.+++|+|++  + ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++.  ....+.+|+
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence            457999999998  4 677889999999999999888877 4568899999999999888874  334444443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=2.7e-22  Score=173.97  Aligned_cols=202  Identities=10%  Similarity=0.056  Sum_probs=133.2

Q ss_pred             eecCCCCEE-EEEeCCCcEEEEeCccccccccccccccc-------------cccccEEEeeccccccceeeeccccCCc
Q 045370            2 VFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSD-------------QLDQRLIEMELRSLRSLLHYSLEHKSSV   67 (350)
Q Consensus         2 ~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~h~~~v   67 (350)
                      +|+++++++ ++|+.|++|++||+.++....... ....             ..++.+..++.......+..+..   +.
T Consensus        65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~  140 (355)
T 3vu4_A           65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FG  140 (355)
T ss_dssp             EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred             EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CC
Confidence            567778777 567888999999998644322111 0000             01122222222211122222222   22


Q ss_pred             eEEEEeeCCCcEEEE--EeCCCcEEEEeCCCCc-----------------eEEEEecCCceeEEEEcCCCcEEEEEccCC
Q 045370           68 TGLLTISGGTTFFVS--SSLDATCKVWDLGSGI-----------------LIQTQVYPQAVTAIAFHPGEQLLFAGSIDG  128 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s--~~~d~~v~vwd~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  128 (350)
                      ..+++ ++  .+++.  |+.||.|++||+.++.                 ......|...|.+++|+|++.+|++|+.||
T Consensus       141 ~~~~~-s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          141 GVCEF-SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEE-ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             ceEEE-Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence            22333 32  34554  6899999999999865                 233346899999999999999999999999


Q ss_pred             e-EEEEeCCccccccccccccccceeee-c-cCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEE--EE--------
Q 045370          129 R-IFVSPLKFLLLEDHFIVGEDQHSVLK-G-HNGSITALAFSASH--LISASEDKTVCLWDVTRRVSI--RR--------  193 (350)
Q Consensus       129 ~-i~i~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~--~~--------  193 (350)
                      . |++||++++          ..+..+. + |...|++++|+|++  |++++.|++|++||++.+...  ..        
T Consensus       218 ~~v~iwd~~~~----------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~  287 (355)
T 3vu4_A          218 TIIRVFKTEDG----------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK  287 (355)
T ss_dssp             SEEEEEETTTC----------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred             CEEEEEECCCC----------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence            8 999999854          3344666 5 99999999999998  999999999999999764311  11        


Q ss_pred             ------------ec-cCCCceeEEEEEccCCeEEeeecCc
Q 045370          194 ------------FN-HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       194 ------------~~-~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                                  +. .+..+...++|+++++.+++++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence                        11 1122347789999999999887765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=5.5e-22  Score=176.57  Aligned_cols=180  Identities=10%  Similarity=0.038  Sum_probs=150.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|+++++++.|+.|++||+.                           .......+..|...+.+++|++.+..++
T Consensus       175 ~~~~~~~~~~~s~~~d~~v~~~d~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          175 ISIPEHNELWVSQMQANAVHVFDLK---------------------------TLAYKATVDLTGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETT---------------------------TCCEEEEEECSSSSEEEEEEETTTTEEE
T ss_pred             EEEcCCCEEEEEECCCCEEEEEECC---------------------------CceEEEEEcCCCCCeeEEEEcCCCCEEE
Confidence            4689999999999999999999998                           4556666678899999999977544444


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc--------cCCeEEEEeCCccccccccccccccce
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS--------IDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++++.|+.|++||+.+++.+..+.....+.+++|+|+++++++++        .||.|++||+.++...           
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~-----------  296 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI-----------  296 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE-----------
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE-----------
Confidence            666689999999999999888887778899999999999999888        4889999999854322           


Q ss_pred             eeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ....|...+.+++|+|++   +++++.|+.|++||+.+++.+..+. +...+.+++|+|+++++++++.+
T Consensus       297 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          297 DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECC
T ss_pred             eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecC
Confidence            222455688999999988   5677899999999999999988887 67789999999999988877764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=2.3e-22  Score=168.33  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             eecC---CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc---CCceEEEEeeC
Q 045370            2 VFSD---DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK---SSVTGLLTISG   75 (350)
Q Consensus         2 ~~s~---dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~   75 (350)
                      +|+|   ++.+|++|+.|++|+|||+.                           ++..+..+.+|.   ..+.+++|+| 
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~---------------------------TGk~l~tL~g~~~~v~~v~~vafSp-  236 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLK---------------------------TGQLLKKMHIDDSYQASVCHKAYSE-  236 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETT---------------------------TCCEEEEEECCC---CCCEEEEEEE-
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECC---------------------------CCcEEEEEcCCCcceeeeEEEEECC-
Confidence            5677   67899999999999999999                           466666666543   3566778877 


Q ss_pred             CCcEE------------EEEeCCCcEEEEeCCCCceEEEEe------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCc
Q 045370           76 GTTFF------------VSSSLDATCKVWDLGSGILIQTQV------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF  137 (350)
Q Consensus        76 ~~~~l------------~s~~~d~~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  137 (350)
                      ++.++            ++|+.|++|++||..+++.+..+.      |...+.+.  +.++.++++++.|++|++||+.+
T Consensus       237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCC
Confidence            55554            678899999999999998876642      33333333  33478899999999999999995


Q ss_pred             cccccccccccccceeeeccCCceE-EEEecCCe--EEEEeCCCcEEEEEC
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSIT-ALAFSASH--LISASEDKTVCLWDV  185 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~--l~s~~~dg~v~iwd~  185 (350)
                      +          +.+..+.+|...+. +++|+|++  |++|+.|++|+|||+
T Consensus       315 G----------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          315 G----------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C----------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             C----------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4          44447778877655 68999998  999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=1.4e-21  Score=169.66  Aligned_cols=126  Identities=16%  Similarity=0.250  Sum_probs=107.3

Q ss_pred             cccceeeeccccCCceEEEEeeCC--CcEEEEEeCCCcEEEEeCCC-CceE-EE-EecCCceeEEEEcCCCcEEEEEccC
Q 045370           53 LRSLLHYSLEHKSSVTGLLTISGG--TTFFVSSSLDATCKVWDLGS-GILI-QT-QVYPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~vwd~~~-~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                      ....+..+.+|.+.|.+++|++.+  +.+|++|+.||.|++||+.+ +... .. ..|...|.+++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            345666788999999999998754  68999999999999999997 5544 33 4589999999999999999999999


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEe--cCCe--EEEEeCCCcEEEEECCCce
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF--SASH--LISASEDKTVCLWDVTRRV  189 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~--l~s~~~dg~v~iwd~~~~~  189 (350)
                      |.|++||+......           .+..|...|++++|  +|++  |++++.||.|++||+++++
T Consensus       108 g~v~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          108 KTAKMWDLSSNQAI-----------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             SEEEEEETTTTEEE-----------EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             CcEEEEEcCCCCce-----------eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            99999999854321           35679999999999  8887  9999999999999998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=7.6e-21  Score=166.88  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=145.5

Q ss_pred             CeecCCCCEEE-EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLI-SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|++|+ +++.|+.|++||+.                           .......+. +...+.+++|++.+..+
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~---------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTT---------------------------SNTVAGTVK-TGKSPLGLALSPDGKKL  130 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETT---------------------------TTEEEEEEE-CSSSEEEEEECTTSSEE
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECC---------------------------CCeEEEEEe-CCCCcceEEECCCCCEE
Confidence            47999999875 45567999999998                           233333333 44578899997644344


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEE-EEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLL-FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++++.|+.|++||+.+++....+.....+.+++|+|+++++ ++++.++.|++||++++...          ..+ .+.
T Consensus       131 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----------~~~-~~~  199 (391)
T 1l0q_A          131 YVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI----------DTV-KVE  199 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----------EEE-ECS
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE----------EEE-ecC
Confidence            478888999999999999998888877888999999999887 57788899999999864322          122 345


Q ss_pred             CceEEEEecCCe--EEEEe---CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          159 GSITALAFSASH--LISAS---EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ..+.+++|+|++  +++++   .++.|++||+.+++.+..+..+. .+.+++|+|+++++++++..+..+.+|+.
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            688999999998  66666   68999999999999998888654 57899999999988655554444555543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=2.7e-21  Score=172.10  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=147.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccccee-----eeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH-----YSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~   75 (350)
                      ++|+|++.++++++.|+.|++||+.+                           .....     .+.+|...|.+++| ++
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~---------------------------g~~~~~~~~~~~~~~~~~v~~~~~-~~  179 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINS---------------------------GQTVRLSPPEKYKKKLGFVETISI-PE  179 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTT---------------------------CCEEEECCCHHHHTTCCEEEEEEE-GG
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCC---------------------------CeEeeecCcccccccCCceeEEEE-cC
Confidence            57999888888888899999999983                           22222     34578899999999 55


Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCcccccccccccccccee
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++.++++++.|+.|++||+.+++.+..+. +...+.+++|+|+++.++ +++.|+.|++||++++...          ..
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----------~~  249 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----------RK  249 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------EE
T ss_pred             CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----------EE
Confidence            78899999999999999999998888765 677899999999999885 5557999999999854332          23


Q ss_pred             eeccCCceEEEEecCCe--EEEEe--------CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          154 LKGHNGSITALAFSASH--LISAS--------EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~--------~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      +.. ...+.+++|+|++  +++++        .||.|++||+++++.+..+. |...+.+++|+|+++.+++++..+..+
T Consensus       250 ~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          250 TDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKI  327 (433)
T ss_dssp             CCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEE
T ss_pred             ecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEE
Confidence            333 3468999999998  77776        48899999999998887764 556889999999998766555444444


Q ss_pred             ccccC
Q 045370          224 KKDRM  228 (350)
Q Consensus       224 ~~~~~  228 (350)
                      .+|+.
T Consensus       328 ~v~d~  332 (433)
T 3bws_A          328 EVYDL  332 (433)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            45543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.9e-21  Score=172.78  Aligned_cols=192  Identities=14%  Similarity=0.125  Sum_probs=138.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |++++++.++++++.|+ +++|+..........     ......+..       ........+...|.+++|++ ++.+|
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~v~~l~~sp-dg~~l  107 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP-----GDDPNKIVD-------KVQGLLVPMKFPIHHLALSC-DNLTL  107 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT-----TCCTTCEEE-------CCCCEEECCSSCEEEEEECT-TSCEE
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhccc-----ccCcccccc-------cCccccccCCCcccEEEEcC-CCCEE
Confidence            47899999999999988 999887632110000     000000000       00111234677899999976 66777


Q ss_pred             E----EEeCCCcEEEEeCCCC--------ceEEE----EecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCccccccc
Q 045370           81 V----SSSLDATCKVWDLGSG--------ILIQT----QVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        81 ~----s~~~d~~v~vwd~~~~--------~~~~~----~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      +    +|+.|+.|++||+.++        +.+..    ..|...|.+++|+|+ +.+|++++.||.|++||++...    
T Consensus       108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~----  183 (434)
T 2oit_A          108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV----  183 (434)
T ss_dssp             EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----
T ss_pred             EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----
Confidence            7    8889999999998754        22222    237889999999997 7899999999999999998542    


Q ss_pred             cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC-------CCceeEEEEEccCCeEE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK-------KGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~l~  214 (350)
                            ......+|...|++++|+|++  |++|+.||.|++||++ ++....+..|       ...+.+++|++++.+++
T Consensus       184 ------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          184 ------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             ------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             ------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence                  222445688899999999999  9999999999999998 5555555433       23799999999998886


Q ss_pred             eee
Q 045370          215 EVS  217 (350)
Q Consensus       215 ~~~  217 (350)
                      +.+
T Consensus       257 ~~~  259 (434)
T 2oit_A          257 VYA  259 (434)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=4e-20  Score=163.60  Aligned_cols=179  Identities=12%  Similarity=0.044  Sum_probs=139.4

Q ss_pred             CeecCCCCEEEEEeCCC---cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDG---MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      ++|||||++|++++.|+   .|++||+.+                           +.. ..+..|...+.+++|+| ++
T Consensus       184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~t---------------------------g~~-~~l~~~~~~~~~~~~sp-dg  234 (415)
T 2hqs_A          184 PAWSPDGSKLAYVTFESGRSALVIQTLAN---------------------------GAV-RQVASFPRHNGAPAFSP-DG  234 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTT---------------------------CCE-EEEECCSSCEEEEEECT-TS
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCC---------------------------CcE-EEeecCCCcccCEEEcC-CC
Confidence            47999999999999885   999999982                           332 34566788899999976 56


Q ss_pred             cEEE-EEeCCCc--EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CC--eEEEEeCCccccccccccccccc
Q 045370           78 TFFV-SSSLDAT--CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DG--RIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        78 ~~l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ..|+ +++.++.  |.+||+.+++......+...+.+++|+|+|++|++++. ++  .|++||+..+.           .
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----------~  303 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----------P  303 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----------C
T ss_pred             CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----------E
Confidence            6555 7776665  99999999887655667888999999999999888775 44  67778887532           1


Q ss_pred             eeeeccCCceEEEEecCCe--EEEEeCC---CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          152 SVLKGHNGSITALAFSASH--LISASED---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~--l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ..+..+...+.+++|+|++  |++++.+   ..|++||+.+++.. .+..+. .+.+++|+|+|++|+.++.+..
T Consensus       304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred             EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence            2344566789999999999  6666654   58999999988774 455443 8999999999999988887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=5.4e-20  Score=163.42  Aligned_cols=198  Identities=13%  Similarity=0.107  Sum_probs=134.1

Q ss_pred             CeecCCCCEEE----EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            1 MVFSDDGFLLI----SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~l~----sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      ++|+|+|++|+    +|+.|+.|+|||+.+.......                ..........+.+|...|.+++|+|.+
T Consensus        98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~h~~~V~~v~~~p~~  161 (434)
T 2oit_A           98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----------------QKRPFAYHKLLKDAGGMVIDMKWNPTV  161 (434)
T ss_dssp             EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS----------------SCCCSEEEECCCSGGGSEEEEEECSSC
T ss_pred             EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC----------------CcceeeeeeccCCCCCceEEEEECCCC
Confidence            57999999999    8889999999999742100000                000011234556799999999998866


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +.+|++++.||+|++||++++..... ..|...|.+++|+|+|++|++|+.||.|++||.+ +.........   .....
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~---~~~~~  237 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP---PFYES  237 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC---TTCCT
T ss_pred             CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC---cccCC
Confidence            88999999999999999998866544 4578899999999999999999999999999998 2211100000   00011


Q ss_pred             ccCCceEEEEecCCe-EE--EEeCCC------cEEEEECCCce-----EEEEec-------cCCCceeEEEEEccCCeEE
Q 045370          156 GHNGSITALAFSASH-LI--SASEDK------TVCLWDVTRRV-----SIRRFN-------HKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~-l~--s~~~dg------~v~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~~~~~~~l~  214 (350)
                      .|...|.++.|++++ ++  .++.||      .+++||+++..     ....+.       ....+-..+.+.++.++++
T Consensus       238 ~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~  317 (434)
T 2oit_A          238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVL  317 (434)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEE
T ss_pred             CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEE
Confidence            344589999999988 33  233443      38999998641     112221       1122333344558888777


Q ss_pred             eeec
Q 045370          215 EVSN  218 (350)
Q Consensus       215 ~~~~  218 (350)
                      +++.
T Consensus       318 v~s~  321 (434)
T 2oit_A          318 AASA  321 (434)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            6665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=7.7e-19  Score=155.36  Aligned_cols=172  Identities=13%  Similarity=0.075  Sum_probs=137.1

Q ss_pred             CCEEEEEeCC------CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            7 GFLLISGSDD------GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         7 g~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +..++.++.+      +.|++||+.                            ......+..|...+.+++|+| ++..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~----------------------------g~~~~~l~~~~~~v~~~~~Sp-dg~~l  193 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD----------------------------GYNQFVVHRSPQPLMSPAWSP-DGSKL  193 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT----------------------------SCSCEEEEEESSCEEEEEECT-TSSEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC----------------------------CCCCEEEeCCCCcceeeEEcC-CCCEE
Confidence            6677776664      799999987                            334566678999999999966 77889


Q ss_pred             EEEeCCC---cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCC--eEEEEeCCccccccccccccccceee
Q 045370           81 VSSSLDA---TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDG--RIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 ~s~~~d~---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      ++++.++   .|++||+.+++......+...+.+++|+|+|+.|+ +++.++  .|++||+.++..           ..+
T Consensus       194 a~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----------~~l  262 (415)
T 2hqs_A          194 AYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----------RQV  262 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------EEC
T ss_pred             EEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----------EeC
Confidence            9988875   99999999998877677888999999999999887 666655  499999885422           255


Q ss_pred             eccCCceEEEEecCCe--EEEEeC-CC--cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          155 KGHNGSITALAFSASH--LISASE-DK--TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ..|...+.+++|+|++  |++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|+.++.+
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc
Confidence            6788899999999999  776665 44  688889988764 3455567789999999999999987765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=1.4e-18  Score=145.89  Aligned_cols=180  Identities=13%  Similarity=0.048  Sum_probs=133.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccc-ccceeeeccc-cCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSL-RSLLHYSLEH-KSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h-~~~v~~~~~~~~~~~   78 (350)
                      ++|+|||++|++++ ++.|.+||+.                           . .........| ...+.+++|++ ++.
T Consensus        47 ~~~spdg~~l~~~~-~~~i~~~d~~---------------------------~~~~~~~~~~~~~~~~~~~~~~sp-dg~   97 (297)
T 2ojh_A           47 PNWSPDGKYLLLNS-EGLLYRLSLA---------------------------GDPSPEKVDTGFATICNNDHGISP-DGA   97 (297)
T ss_dssp             EEECTTSSEEEEEE-TTEEEEEESS---------------------------SCCSCEECCCTTCCCBCSCCEECT-TSS
T ss_pred             eEECCCCCEEEEEc-CCeEEEEeCC---------------------------CCCCceEeccccccccccceEECC-CCC
Confidence            47999999999987 7899999998                           2 2333333344 46788899866 677


Q ss_pred             EEEEEe--CCCcEEEEe--CCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCcccccccccccccccee
Q 045370           79 FFVSSS--LDATCKVWD--LGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        79 ~l~s~~--~d~~v~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++++++  .++...+|.  ..++. ...+.....+..++|+|++++|+ +++.++.+.+|++...         ......
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~---------~~~~~~  167 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID---------SGVETR  167 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT---------TCCEEE
T ss_pred             EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC---------CCcceE
Confidence            888888  334555555  45554 33444455689999999999877 7778999999987521         122235


Q ss_pred             eeccCCceEEEEecCCe--EEEEe-CCCcEEEEECC-CceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          154 LKGHNGSITALAFSASH--LISAS-EDKTVCLWDVT-RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      +..+...+.++.|+|++  ++.++ .++.+++|++. .+..+..+..|...+.+++|+|++++|+.++.+
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            56677889999999998  55554 58999999886 455667777777889999999999999877765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=1.5e-18  Score=158.22  Aligned_cols=195  Identities=10%  Similarity=0.032  Sum_probs=146.0

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|+|++.++++++.|++|.+||..                           ...++..+..+.. +.++++++ ++++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~---------------------------t~~~~~~i~~g~~-~~~v~~sp-dg~~l~  194 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGD---------------------------SKKIVKVIDTGYA-VHISRMSA-SGRYLL  194 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETT---------------------------TCCEEEEEECSTT-EEEEEECT-TSCEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECC---------------------------CceEEEEEecCcc-cceEEECC-CCCEEE
Confidence            478899999999999999999998                           4555555553333 77888855 788999


Q ss_pred             EEeCCCcEEEEeC--CCCceEEEEecCCceeEEEEcC----CCcEEEEEcc-CCeEEEEeCCccccccccccccccceee
Q 045370           82 SSSLDATCKVWDL--GSGILIQTQVYPQAVTAIAFHP----GEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        82 s~~~d~~v~vwd~--~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +++.|++|.+||+  .+++++..+.+...+..++|+|    +|+++++++. ++.|.+||..+.+...............
T Consensus       195 v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~  274 (543)
T 1nir_A          195 VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ  274 (543)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred             EECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc
Confidence            9999999999999  8898888888888899999999    9999999884 8999999988655433211110000000


Q ss_pred             eccC-CceEEEEecCCe---EEEEeCCCcEEEEECCCceEEE--EeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          155 KGHN-GSITALAFSASH---LISASEDKTVCLWDVTRRVSIR--RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       155 ~~~~-~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ..|. ..+..+.++|++   +++...++.|.+||+.+.+.+.  .+. +...+..++|+|+|+++++++.....+.+|
T Consensus       275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence            1133 378999999976   7778889999999998765433  444 556788999999999887676544333344

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=7e-18  Score=144.50  Aligned_cols=192  Identities=11%  Similarity=0.060  Sum_probs=138.1

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccc-eeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL-LHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|||++|++++. ++.|.+||..                           .... ......+..+..+++|++ ++.
T Consensus        45 ~~~s~dg~~l~~~~~~~~~i~~~d~~---------------------------~~~~~~~~~~~~~~~~~~~~~s~-dg~   96 (331)
T 3u4y_A           45 TAITSDCSNVVVTSDFCQTLVQIETQ---------------------------LEPPKVVAIQEGQSSMADVDITP-DDQ   96 (331)
T ss_dssp             EEECSSSCEEEEEESTTCEEEEEECS---------------------------SSSCEEEEEEECSSCCCCEEECT-TSS
T ss_pred             EEEcCCCCEEEEEeCCCCeEEEEECC---------------------------CCceeEEecccCCCCccceEECC-CCC
Confidence            579999997766665 8999999998                           2333 444555556655588866 667


Q ss_pred             EEEEEeCCC---cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCe-EEEEeCCcccccccccccccccee
Q 045370           79 FFVSSSLDA---TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGR-IFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        79 ~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +++++..++   .|.+||+.+++.+..+.....+.+++|+|+|++++++ ..++. |.+|++.......    ... . .
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~----~~~-~-~  170 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF----DTG-Q-E  170 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE----EEE-E-E
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe----ecC-C-c
Confidence            777555553   8999999999998888877788999999999866655 44578 9999987432110    000 1 1


Q ss_pred             eeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceE---EEEeccCCCceeEEEEEccCCeEEeeecCcccccccc
Q 045370          154 LKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVS---IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~  227 (350)
                      .......+..++|+|++  + +++..++.|++||+.+++.   +..+.. ...+..++|+|+|+++++++.....+.+++
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            12334568999999998  4 4555689999999999887   777764 467789999999998776665443344443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=2e-18  Score=145.02  Aligned_cols=184  Identities=12%  Similarity=0.059  Sum_probs=133.0

Q ss_pred             CeecCCCCEEEEEe--CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGS--DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|||++|++++  .++.+.||.++..                          ......+. +...+..++|++.+..
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~--------------------------~~~~~~~~-~~~~~~~~~~spdg~~  142 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPST--------------------------GGTPRLMT-KNLPSYWHGWSPDGKS  142 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETT--------------------------CCCCEECC-SSSSEEEEEECTTSSE
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECC--------------------------CCceEEee-cCCCccceEECCCCCE
Confidence            57999999999999  4456777766410                          11122222 2334788888664433


Q ss_pred             EEEEEeCCCcEEEEeC--CCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDL--GSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++++++.++.+++|++  .++.......+...+.+++|+|++++|+.++ .++.+.+|++..         .......+.
T Consensus       143 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------~~~~~~~~~  213 (297)
T 2ojh_A          143 FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------DGSSVERIT  213 (297)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET---------TSSCEEECC
T ss_pred             EEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC---------CCCCcEEEe
Confidence            4448889999999985  4455544456778899999999999887665 588999998762         122334566


Q ss_pred             ccCCceEEEEecCCe--EEEEeCC-----------CcEEEEECCCceE--EEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          156 GHNGSITALAFSASH--LISASED-----------KTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~--l~s~~~d-----------g~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .|...+.++.|+|++  |++++.+           +.|++||+.+++.  +..+..|...+.+++|+|+++.|++++.+.
T Consensus       214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            677889999999999  6666655           5699999988754  444557788999999999999998887653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=5.6e-18  Score=154.51  Aligned_cols=183  Identities=11%  Similarity=0.048  Sum_probs=138.6

Q ss_pred             CeecC----CCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc----------ccC
Q 045370            1 MVFSD----DGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE----------HKS   65 (350)
Q Consensus         1 i~~s~----dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~   65 (350)
                      |+|||    ||++|++++. +++|.|||..+                           ..++..+..          |..
T Consensus       227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---------------------------~~~~~~i~~~g~~~~~~~~~~~  279 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGET---------------------------LEPKQIVSTRGMTVDTQTYHPE  279 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTT---------------------------CCEEEEEECCEECSSSCCEESC
T ss_pred             EEeCCCcCCCCCEEEEEEccCCeEEEEeccc---------------------------cccceeecccCcccCccccccC
Confidence            57999    9999999885 89999999873                           222222221          333


Q ss_pred             -CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEE--EEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccc
Q 045370           66 -SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQ--TQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        66 -~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  141 (350)
                       .+..+.+++.++.++++...++.|.+||+.+++.+.  .+.+...+..+.|+|++++++++ ..++.|.+||..++++.
T Consensus       280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence             788898988777888899999999999998876544  46677788999999999987765 45899999999976543


Q ss_pred             cccccccccceeeeccCCceEEEEecCC-e--EEEEe-CCCcEEEEECCC-------ceEEEEeccCCCceeEEEEEccC
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSAS-H--LISAS-EDKTVCLWDVTR-------RVSIRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~--l~s~~-~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~  210 (350)
                      ......      ...|.+....+ ++|+ +  +++++ .|++|.+||+.+       ++++.++..|.+.+..+.|+|++
T Consensus       360 ~~i~~g------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg  432 (543)
T 1nir_A          360 ALVDVG------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS  432 (543)
T ss_dssp             EEEECS------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             EeeccC------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC
Confidence            221110      01255444333 4676 5  66665 589999999998       89999999988888999999999


Q ss_pred             CeEEeee
Q 045370          211 SLLSEVS  217 (350)
Q Consensus       211 ~~l~~~~  217 (350)
                      ++|++++
T Consensus       433 ~~l~v~~  439 (543)
T 1nir_A          433 SHLYVDT  439 (543)
T ss_dssp             CEEEECC
T ss_pred             CcEEEec
Confidence            9999876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.78  E-value=9.3e-18  Score=159.45  Aligned_cols=209  Identities=10%  Similarity=-0.031  Sum_probs=131.6

Q ss_pred             CeecCCCCEEEEEeC-CC-----cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSD-DG-----MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~   74 (350)
                      ++|||||++|++++. |+     .|++||+.++....... ......++..+.........  .........+.+++|+|
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRE--RQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC----------------------CCEESCCCEECT
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhh--hhhhccccCcceeEECC
Confidence            479999999999998 88     99999998432111000 00000000000000000000  00000013478888865


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCC---ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSG---ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                       ++++|++++. +.|.+||+.++   .......+...+.+++|+|||++|+.++ ++.|++||+..+...........  
T Consensus       119 -Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~--  193 (741)
T 2ecf_A          119 -DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST--  193 (741)
T ss_dssp             -TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS--
T ss_pred             -CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc--
Confidence             7788888875 99999999988   6555556778899999999999999887 56999999986543211000000  


Q ss_pred             eeeecc--------CCceEEEEecCCe--EEEEeCCC---------------------------------cEEEEECCC-
Q 045370          152 SVLKGH--------NGSITALAFSASH--LISASEDK---------------------------------TVCLWDVTR-  187 (350)
Q Consensus       152 ~~~~~~--------~~~i~~~~~~~~~--l~s~~~dg---------------------------------~v~iwd~~~-  187 (350)
                      ....++        ...+..+.|+|++  |++++.|+                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            000010        1124789999999  88877665                                 889999988 


Q ss_pred             ceEEEEec--cCCCceeEEEEEccCCeEEeeec
Q 045370          188 RVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       188 ~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ++......  .|...+.+++| |||+.|+.++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence            77654432  36778999999 99999886654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=3.9e-17  Score=140.99  Aligned_cols=188  Identities=11%  Similarity=0.103  Sum_probs=141.1

Q ss_pred             CeecCCCCEEEEEeC-------CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEe
Q 045370            1 MVFSDDGFLLISGSD-------DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTI   73 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   73 (350)
                      ++|+|+|+++++++.       ++.|.+||..+                           ......+. ....+..++++
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---------------------------~~~~~~~~-~~~~~~~~~~s   97 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---------------------------LEVTQAIH-NDLKPFGATIN   97 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTT---------------------------CCEEEEEE-ESSCCCSEEEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---------------------------CeEEEEEe-cCCCcceEEEC
Confidence            479999998888874       56899999882                           33333332 23456778887


Q ss_pred             eCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCC----------ceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccc
Q 045370           74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQ----------AVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLE  141 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  141 (350)
                      +.+..+++++..++.|.+||..+++.+..+....          .+.+++|+|+++++++++  .++.|.+||..++...
T Consensus        98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A           98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            7544466677778999999999999888766432          268899999999888776  4789999999854332


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEe
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~  215 (350)
                                ..+..+...+.+++|+|++  +++++.++.|.+||+.+++.+..+..    +...+.+++|+|+++++++
T Consensus       178 ----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          178 ----------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             ----------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             ----------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence                      2444345567889999998  88888899999999999999888764    4556788999999998887


Q ss_pred             eecCccccccc
Q 045370          216 VSNCQRKLKKD  226 (350)
Q Consensus       216 ~~~~~~~~~~~  226 (350)
                      ++.....+.++
T Consensus       248 ~~~~~~~v~~~  258 (353)
T 3vgz_A          248 TDSKAAEVLVV  258 (353)
T ss_dssp             EESSSSEEEEE
T ss_pred             EeCCCCEEEEE
Confidence            77664444444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=3.1e-17  Score=140.93  Aligned_cols=197  Identities=11%  Similarity=0.071  Sum_probs=129.3

Q ss_pred             CeecCCCCEEEEEeCC-CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDD-GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|++|++++.+ +.|.+|++....                       .....+..+..+ ..+..++|++ ++.+
T Consensus        43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~~~~s~-dg~~   97 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDD-----------------------GALTFAAESALP-GSLTHISTDH-QGQF   97 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTT-----------------------CCEEEEEEEECS-SCCSEEEECT-TSSE
T ss_pred             EEECCCCCEEEEeecCCCeEEEEEecCCC-----------------------CceeeccccccC-CCCcEEEEcC-CCCE
Confidence            5799999999988886 999999986100                       001122222223 3788899866 5565


Q ss_pred             EEEE-eCCCcEEEEeCC---CCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCc-ccccccccccccccee
Q 045370           80 FVSS-SLDATCKVWDLG---SGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKF-LLLEDHFIVGEDQHSV  153 (350)
Q Consensus        80 l~s~-~~d~~v~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~  153 (350)
                      ++++ ..++.|.+||+.   .......+.....+.+++|+|+++++++++ .++.|.+||+.. +......      ...
T Consensus        98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------~~~  171 (343)
T 1ri6_A           98 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD------PAE  171 (343)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE------EEE
T ss_pred             EEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec------ccc
Confidence            5554 458899999994   334445555666799999999999888877 899999999975 3221100      001


Q ss_pred             ee-ccCCceEEEEecCCe--EE-EEeCCCcEEEEECCC--ceE--EEEec---cC---CCceeEEEEEccCCeEEeeecC
Q 045370          154 LK-GHNGSITALAFSASH--LI-SASEDKTVCLWDVTR--RVS--IRRFN---HK---KGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       154 ~~-~~~~~i~~~~~~~~~--l~-s~~~dg~v~iwd~~~--~~~--~~~~~---~~---~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .. .....+.+++|+|++  ++ ++..++.|.+||+..  ++.  ...+.   ..   ...+..++|+|++++|+++...
T Consensus       172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            11 233578899999998  44 445789999999953  332  22222   11   2356689999999988866644


Q ss_pred             ccccccccC
Q 045370          220 QRKLKKDRM  228 (350)
Q Consensus       220 ~~~~~~~~~  228 (350)
                      ...+.+|+.
T Consensus       252 ~~~i~v~d~  260 (343)
T 1ri6_A          252 ASLITVFSV  260 (343)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            444444433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=3.2e-17  Score=140.80  Aligned_cols=195  Identities=11%  Similarity=0.092  Sum_probs=130.5

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|++|++++. ++.|.+||+..+.                        ......... ....+.+++|++ ++.+
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~------------------------~~~~~~~~~-~~~~~~~~~~s~-dg~~  142 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGL------------------------PVGVVDVVE-GLDGCHSANISP-DNRT  142 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTE------------------------EEEEEEEEC-CCTTBCCCEECT-TSSE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECCCCc------------------------ccccccccc-CCCCceEEEECC-CCCE
Confidence            479999998876665 8899999984100                        122222222 334578888866 5565


Q ss_pred             EEEEe-CCCcEEEEeCCC-CceEEE------EecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCc--ccccccccccc
Q 045370           80 FVSSS-LDATCKVWDLGS-GILIQT------QVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKF--LLLEDHFIVGE  148 (350)
Q Consensus        80 l~s~~-~d~~v~vwd~~~-~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~~~~~~~~~  148 (350)
                      +++++ .++.|.+||+.+ ++....      ......+..++|+|++++++++ ..++.|.+|++..  +.....     
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~-----  217 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-----  217 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-----
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-----
Confidence            66665 899999999987 654322      1234578899999999977655 4789999999963  211100     


Q ss_pred             ccceeee---ccCCceEEEEecCCe--EE-EEeCCCcEEEEECC----CceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          149 DQHSVLK---GHNGSITALAFSASH--LI-SASEDKTVCLWDVT----RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       149 ~~~~~~~---~~~~~i~~~~~~~~~--l~-s~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .....+.   .....+.+++|+|++  |+ ++..++.|++||+.    +.+.+..+..+.. +.+++|+|++++|++++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred             eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence            0000111   113467789999998  44 55578999999998    3455666654444 899999999998888876


Q ss_pred             Ccccccccc
Q 045370          219 CQRKLKKDR  227 (350)
Q Consensus       219 ~~~~~~~~~  227 (350)
                      +...+.+|.
T Consensus       297 ~~~~v~v~~  305 (343)
T 1ri6_A          297 KSHHISVYE  305 (343)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            555555553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=9.4e-17  Score=138.59  Aligned_cols=192  Identities=9%  Similarity=0.019  Sum_probs=138.0

Q ss_pred             CeecCCCCEEE-EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC---------CceEE
Q 045370            1 MVFSDDGFLLI-SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS---------SVTGL   70 (350)
Q Consensus         1 i~~s~dg~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~   70 (350)
                      ++|+|||++++ ++..++.|.+||..+                           ......+..+..         .+.++
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKT---------------------------GEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTT---------------------------CCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCC---------------------------CeeEEEEecCCCccccccCCCCCceE
Confidence            47899999555 555579999999983                           333333332221         26788


Q ss_pred             EEeeCCCcEEEEEe--CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccc
Q 045370           71 LTISGGTTFFVSSS--LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        71 ~~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      +|++ ++.++++++  .++.|.+||..+++....+. +...+.+++|+|+++++++++.++.|.+||..++........ 
T Consensus       147 ~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-  224 (353)
T 3vgz_A          147 VADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL-  224 (353)
T ss_dssp             EEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC-
T ss_pred             EECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc-
Confidence            8876 455455444  57899999999999988887 566689999999999999999999999999986544321111 


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                           ...++...+..++|+|++  +++++ .++.|.+||+.+++.+..+....  ...++|+|+++++++++.....+.
T Consensus       225 -----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          225 -----LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             -----CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred             -----CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence                 011245678899999998  55444 55999999999999988887433  367999999997776765544444


Q ss_pred             cccC
Q 045370          225 KDRM  228 (350)
Q Consensus       225 ~~~~  228 (350)
                      +++.
T Consensus       298 ~~d~  301 (353)
T 3vgz_A          298 VIDA  301 (353)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            4443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=5.8e-18  Score=160.40  Aligned_cols=187  Identities=10%  Similarity=0.006  Sum_probs=131.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC---CceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS---SVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~   77 (350)
                      ++|||||+++++ +.||+|++||+.                           .+.....+..|..   .|.+++|+| ++
T Consensus        22 ~~~spdg~~~~~-~~dg~i~~~d~~---------------------------~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg   72 (723)
T 1xfd_A           22 AKWISDTEFIYR-EQKGTVRLWNVE---------------------------TNTSTVLIEGKKIESLRAIRYEISP-DR   72 (723)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGG---------------------------GCCCEEEECTTTTTTTTCSEEEECT-TS
T ss_pred             cEEcCCCcEEEE-eCCCCEEEEECC---------------------------CCcEEEEeccccccccccceEEECC-CC
Confidence            579999998876 789999999998                           3444444455554   489999966 77


Q ss_pred             cEEEEEeCC---------CcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccc
Q 045370           78 TFFVSSSLD---------ATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        78 ~~l~s~~~d---------~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  145 (350)
                      ++|++++.+         +.+.+||+.+++......   +...+..++|+|||+.|+.++. +.|++||+..+.......
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence            888888764         778899999987633222   3334889999999999998875 899999998643321100


Q ss_pred             cccccceeeeccC---------CceEEEEecCCe--EEEEeCCC----------------------------------cE
Q 045370          146 VGEDQHSVLKGHN---------GSITALAFSASH--LISASEDK----------------------------------TV  180 (350)
Q Consensus       146 ~~~~~~~~~~~~~---------~~i~~~~~~~~~--l~s~~~dg----------------------------------~v  180 (350)
                      .. .....+.++.         ..+.+++|+|++  |++++.|+                                  .|
T Consensus       152 ~~-~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          152 TG-KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CC-BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CC-CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            00 0000011111         133789999999  77776543                                  79


Q ss_pred             EEEECCCceEEEEeccC------CCceeEEEEEccCCeEEeeec
Q 045370          181 CLWDVTRRVSIRRFNHK------KGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       181 ~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ++||+.+++....+..+      ...+.+++|+|||+++++.+.
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence            99999988765566543      567899999999998876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=2.1e-16  Score=136.33  Aligned_cols=204  Identities=13%  Similarity=0.096  Sum_probs=133.6

Q ss_pred             CeecCCCCEEEEEe-CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|+|||++|++++ .++.|.+|++.......            .+......... +.  ...+...+.+++|+| ++++
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~------------~~~~~~~~~~~-p~--~~~~~~~~~~~~~sp-dg~l  154 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALT------------LTDTVQHSGHG-PR--PEQDGSHIHYTDLTP-DNRL  154 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEE------------EEEEEECCCCC-SS--TTCSSCCEEEEEECT-TSCE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCee------------ecceeecCCCC-CC--ccccCCCceEEEECC-CCcE
Confidence            57999999988888 68999999986210000            00000000000 00  011334578899876 5557


Q ss_pred             EEEEeCCCcEEEEeCC-CCceEEE--Ee--cCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCc--cccccccccccccc
Q 045370           80 FVSSSLDATCKVWDLG-SGILIQT--QV--YPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKF--LLLEDHFIVGEDQH  151 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~-~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~~  151 (350)
                      +++...++.|.+|++. ++.....  +.  ....+..++|+|+|+++++ ...++.|.+|++..  +....        .
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~--------~  226 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ--------L  226 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE--------E
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE--------e
Confidence            7777778999999998 5554332  22  2336788999999996665 56689999999874  22110        1


Q ss_pred             eeeecc------CCceEEEEecCCe--E-EEEeCCCcEEEEECC---CceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          152 SVLKGH------NGSITALAFSASH--L-ISASEDKTVCLWDVT---RRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       152 ~~~~~~------~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ..+...      ...+..++|+|++  | ++...++.|.+||+.   ..+.+..+..+...+..++|+|+|++|++++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence            111111      1458899999999  4 556678999999997   335666666666678999999999999888776


Q ss_pred             ccccccccC
Q 045370          220 QRKLKKDRM  228 (350)
Q Consensus       220 ~~~~~~~~~  228 (350)
                      ...+.+|.+
T Consensus       307 ~~~v~v~~~  315 (347)
T 3hfq_A          307 TDNATLYAR  315 (347)
T ss_dssp             TTEEEEEEE
T ss_pred             CCcEEEEEE
Confidence            555555533

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=2.7e-16  Score=134.63  Aligned_cols=194  Identities=10%  Similarity=0.006  Sum_probs=137.4

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-c----ccCCceEEEEee
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-E----HKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~v~~~~~~~   74 (350)
                      ++|+|||+++ ++++.++.|.+||+.+                           ......+. .    |...+.+++|++
T Consensus        39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~s~   91 (337)
T 1pby_B           39 PMVAPGGRIAYATVNKSESLVKIDLVT---------------------------GETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT---------------------------CCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             eEEcCCCCEEEEEeCCCCeEEEEECCC---------------------------CCeEeeEEcCCcccccccccceEECC
Confidence            4799999765 5566689999999873                           22222221 1    233677888865


Q ss_pred             CCCcEEEEEe------------CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           75 GGTTFFVSSS------------LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        75 ~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                       ++.++++++            .++.|.+||+.+++....+.....+.+++|+|++++++++  ++.|.+||+.++....
T Consensus        92 -dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~  168 (337)
T 1pby_B           92 -DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE  168 (337)
T ss_dssp             -TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred             -CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence             666677765            5799999999999888887777788999999999988888  6889999998765432


Q ss_pred             cccccc-----------c---------------------------------cce------------eeeccCCceEEEEe
Q 045370          143 HFIVGE-----------D---------------------------------QHS------------VLKGHNGSITALAF  166 (350)
Q Consensus       143 ~~~~~~-----------~---------------------------------~~~------------~~~~~~~~i~~~~~  166 (350)
                      ......           .                                 .+.            .+..+...+.+++|
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence            111000           0                                 000            12233446778999


Q ss_pred             cCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          167 SASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       167 ~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +|++  ++++  ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.+ ..+.+|+.
T Consensus       249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~i~v~d~  308 (337)
T 1pby_B          249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGAL-GDLAAYDA  308 (337)
T ss_dssp             CTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBS-SEEEEEET
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCC-CcEEEEEC
Confidence            9998  5555  78999999999998888774 3567899999999988877554 33444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=5.8e-17  Score=159.48  Aligned_cols=177  Identities=14%  Similarity=0.048  Sum_probs=143.4

Q ss_pred             Ceec-CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC-CceEEEEeeCCCc
Q 045370            1 MVFS-DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS-SVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s-~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~   78 (350)
                      ++|| |||++|++++ ++.|.+|++..                           .. ...+..|.. .+..++|+  ++.
T Consensus       301 ~~~S~pdG~~la~~~-~~~i~~~~~~~---------------------------~~-~~~~~~~~~~~~~~~~~s--dg~  349 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVS-RGQAFIQDVSG---------------------------TY-VLKVPEPLRIRYVRRGGD--TKV  349 (1045)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTS---------------------------SB-EEECSCCSCEEEEEECSS--SEE
T ss_pred             eeecCCCCCEEEEEE-cCEEEEEcCCC---------------------------Cc-eEEccCCCcceEEeeeEc--CCC
Confidence            4799 9999999888 78999999872                           22 233456666 78889886  777


Q ss_pred             EEEEEeCCCcEE-EEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           79 FFVSSSLDATCK-VWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        79 ~l~s~~~d~~v~-vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      .+++++.++.+. +||+.++.......+...+..++|+|+|++|++++.++.|++||+.++.          ......+|
T Consensus       350 ~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~----------~~~~~~~~  419 (1045)
T 1k32_A          350 AFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK----------PTVIERSR  419 (1045)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------EEEEEECS
T ss_pred             eEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc----------eEEeccCC
Confidence            888888888888 9999887765545566789999999999999999999999999998543          22244578


Q ss_pred             CCceEEEEecCCe--EEEEeCCC----------cEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          158 NGSITALAFSASH--LISASEDK----------TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ...+.+++|+|++  |++++.++          .|++||+.+++ +..+..|...+.+++|+|+|+.|+.++.+
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            8899999999999  77666543          89999999988 66777788889999999999998877764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=1.3e-16  Score=147.35  Aligned_cols=203  Identities=10%  Similarity=0.020  Sum_probs=137.0

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccc-------cccccccEEEeec--cc------------ccccee
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHH-------SDQLDQRLIEMEL--RS------------LRSLLH   58 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~------------~~~~~~   58 (350)
                      ++|+|||++||+++. ||+++||++..+... ....+.       .-..+..++....  ..            .+... 
T Consensus        27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-  104 (582)
T 3o4h_A           27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-  104 (582)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-
T ss_pred             eecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-
Confidence            479999999999887 999999998543221 111111       0011211111111  00            01111 


Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC----CeEEEEe
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID----GRIFVSP  134 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d  134 (350)
                      .+. ....+...+|++.+...+++.+.++.+.+||+.+++......+..  .+++|+|||++|++++.+    +.|++||
T Consensus       105 ~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d  181 (582)
T 3o4h_A          105 RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN  181 (582)
T ss_dssp             ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence            111 122344557766554444444445556699999998776665554  899999999999988776    7899999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCC--cEEEEECCCceEEEEeccCCCceeEEE-----
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDK--TVCLWDVTRRVSIRRFNHKKGVVTNLV-----  205 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~-----  205 (350)
                      +.++..           ..+..|...+..++|+|+|  |+++..++  .|++||+.+++.. .+..|...+..++     
T Consensus       182 ~~~g~~-----------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          182 LSSGGL-----------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             TTTCCC-----------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred             CCCCCc-----------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence            875432           2566788889999999999  77777888  8999999998887 7777777777777     


Q ss_pred             ---EEccCCeEEeeecCc
Q 045370          206 ---VIRQSSLLSEVSNCQ  220 (350)
Q Consensus       206 ---~~~~~~~l~~~~~~~  220 (350)
                         |+|||.++++++.++
T Consensus       250 ~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EEEECTTSCEEEEEEETT
T ss_pred             ceeEcCCCcEEEEEEcCC
Confidence               999997777666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=6.1e-16  Score=132.41  Aligned_cols=186  Identities=11%  Similarity=0.007  Sum_probs=126.0

Q ss_pred             eecCCCCE-EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFL-LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|++++++ +++++.++.|.+||..                           ..........+...+ .++|++ ++.++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~---------------------------~~~~~~~~~~~~~~~-~~~~s~-dg~~l   54 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD---------------------------TLEILNQITLGYDFV-DTAITS-DCSNV   54 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT---------------------------TCCEEEEEECCCCEE-EEEECS-SSCEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc---------------------------ccceeeeEEccCCcc-eEEEcC-CCCEE
Confidence            46666655 7788889999999998                           344444444555556 888866 55544


Q ss_pred             -EEEeCCCcEEEEeCCCCce-EEEEecCCceeE-EEEcCCCcEEEEEccCC---eEEEEeCCccccccccccccccceee
Q 045370           81 -VSSSLDATCKVWDLGSGIL-IQTQVYPQAVTA-IAFHPGEQLLFAGSIDG---RIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        81 -~s~~~d~~v~vwd~~~~~~-~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                       +++..++.|.+||+.+++. ...+........ ++|+|++++++++..++   .|.+||+..+...          ..+
T Consensus        55 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~----------~~~  124 (331)
T 3u4y_A           55 VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI----------STI  124 (331)
T ss_dssp             EEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE----------EEE
T ss_pred             EEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE----------EEE
Confidence             4555589999999999987 666554444455 99999999999655553   8999999864432          233


Q ss_pred             eccCCceEEEEecCCe--E-EEEeCCCc-EEEEECCCceEE----EEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          155 KGHNGSITALAFSASH--L-ISASEDKT-VCLWDVTRRVSI----RRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~--l-~s~~~dg~-v~iwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      .. .....+++|+|++  + +++..++. |.+|++.....+    .........+..++|+|+|+++++++.....+.+|
T Consensus       125 ~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  203 (331)
T 3u4y_A          125 PI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL  203 (331)
T ss_dssp             EC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence            22 3456899999998  4 44456688 999998753322    11122345679999999999777666554444444


Q ss_pred             c
Q 045370          227 R  227 (350)
Q Consensus       227 ~  227 (350)
                      +
T Consensus       204 d  204 (331)
T 3u4y_A          204 E  204 (331)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.73  E-value=6.6e-17  Score=153.59  Aligned_cols=181  Identities=12%  Similarity=0.051  Sum_probs=134.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc--ceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS--LLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|||||++|++++. +.|.+||+.+                           ..  ....+..|...+.+++|+| +++
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~---------------------------~~~~~~~~l~~~~~~~~~~~~SP-DG~  164 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQ---------------------------EGKAAVRQLTHGEGFATDAKLSP-KGG  164 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSS---------------------------CSTTSCCBCCCSSSCEEEEEECT-TSS
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCC---------------------------CCcceEEEcccCCcccccccCCC-CCC
Confidence            579999999999987 9999999982                           21  3344566778899999966 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCCc-----------------eeEEEEcCCCcEEEEEccCC-------------
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQA-----------------VTAIAFHPGEQLLFAGSIDG-------------  128 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~dg-------------  128 (350)
                      +|+.++ ++.|.+||+.+++..........                 +.+++|+|||++|++++.|+             
T Consensus       165 ~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p  243 (741)
T 2ecf_A          165 FVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA  243 (741)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred             EEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence            888877 56899999998876654332221                 47899999999999987765             


Q ss_pred             --------------------eEEEEeCCc-cccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-----CCcE
Q 045370          129 --------------------RIFVSPLKF-LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-----DKTV  180 (350)
Q Consensus       129 --------------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-----dg~v  180 (350)
                                          .|++||+.+ +.....        .....|...+..++| |++  |++++.     +..|
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI--------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE--------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred             CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe--------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence                                788888875 432110        001147788999999 998  665443     5689


Q ss_pred             EEEECCCceEEEEeccCCC----ceeEEEEEccCCeEEeeecCc
Q 045370          181 CLWDVTRRVSIRRFNHKKG----VVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       181 ~iwd~~~~~~~~~~~~~~~----~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ++||+.+++....+..+..    .+..++|+|+|+++++++.++
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  358 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG  358 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence            9999999987776654433    457899999999887666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=6.5e-16  Score=133.00  Aligned_cols=158  Identities=10%  Similarity=-0.001  Sum_probs=116.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~   79 (350)
                      +++++++.++++++.++.|.+||..+                           ......+..+. ..+..++|++.+..+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~   57 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVAS---------------------------DTVYKSCVMPDKFGPGTAMMAPDNRTA   57 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT---------------------------TEEEEEEECSSCCSSCEEEECTTSSEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCC---------------------------CcEEEEEecCCCCCCceeEECCCCCEE
Confidence            46889999999999999999999982                           33333333222 257788886644345


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCC-------ceeEEEEcCCCcEEEEEccC------------CeEEEEeCCcccc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQ-------AVTAIAFHPGEQLLFAGSID------------GRIFVSPLKFLLL  140 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~  140 (350)
                      ++++..++.|.+||+.+++....+....       .+..++|+|+|+++++++.+            +.|.+||+.++..
T Consensus        58 ~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           58 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            5666778999999999998887765432       37899999999999998865            8999999986432


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      ..       ....+ .+...+.+++|+|++ +++++.  .|++||+.+++.+..+.
T Consensus       138 ~~-------~~~~~-~~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          138 AK-------PVRTF-PMPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             BC-------CSEEE-ECCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEEC
T ss_pred             cc-------eeeec-cCCCcccceeECCCCcEEEccC--cEEEEeCCCCceecccc
Confidence            21       11122 233468899999999 666544  49999999988877664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.72  E-value=7.7e-16  Score=132.78  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=125.8

Q ss_pred             CeecCCCCEEEEEeC---CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD---DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      |+|+|||+ |++++.   ++.|.+||+..+                         ....+.....+...+..++|++ ++
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-------------------------~~~~~~~~~~~~~~p~~~a~sp-dg   97 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-------------------------TAHKLNTVVAPGTPPAYVAVDE-AR   97 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETT-------------------------EEEEEEEEEEESCCCSEEEEET-TT
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCC-------------------------cEEEeeeeecCCCCCEEEEECC-CC
Confidence            57999999 555544   689999998621                         1123334455778889999866 66


Q ss_pred             cEEEEEe-CCCcEEEEeCC-CCce--EEEEecC----------CceeEEEEcCCCcEEEEEccCCeEEEEeCC-cccccc
Q 045370           78 TFFVSSS-LDATCKVWDLG-SGIL--IQTQVYP----------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLK-FLLLED  142 (350)
Q Consensus        78 ~~l~s~~-~d~~v~vwd~~-~~~~--~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~  142 (350)
                      +++++++ .++.|.+|++. ++..  +..+.+.          ..+.+++|+|+|+.+++...++.|.+|++. .+....
T Consensus        98 ~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A           98 QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE
Confidence            6666666 78999999996 3332  2233322          237889999999966666778999999998 222110


Q ss_pred             ccccccccceeeec-cCCceEEEEecCCe--E-EEEeCCCcEEEEECCC--ceE--EEEeccCC------CceeEEEEEc
Q 045370          143 HFIVGEDQHSVLKG-HNGSITALAFSASH--L-ISASEDKTVCLWDVTR--RVS--IRRFNHKK------GVVTNLVVIR  208 (350)
Q Consensus       143 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~--~~~--~~~~~~~~------~~v~~l~~~~  208 (350)
                              ...+.. ....+..++|+|++  + +++..++.|.+|++..  ++.  +..+....      ..+..++|+|
T Consensus       178 --------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          178 --------QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             --------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             --------eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence                    111122 23367889999998  4 4456788999999874  543  33333222      3588899999


Q ss_pred             cCCeEEeeecCcccccccc
Q 045370          209 QSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~  227 (350)
                      +|++|++++.....+.+|+
T Consensus       250 dG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEE
Confidence            9998865555443344443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=2.9e-15  Score=129.86  Aligned_cols=153  Identities=7%  Similarity=0.044  Sum_probs=104.6

Q ss_pred             ceEEEEeeCCCc-EEEEEeCCCcEEEEeCCCCc-------e-------EEEEecCCceeEEEEcCCCcEEEEEc-cCCeE
Q 045370           67 VTGLLTISGGTT-FFVSSSLDATCKVWDLGSGI-------L-------IQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRI  130 (350)
Q Consensus        67 v~~~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~-------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  130 (350)
                      +.+++|+| +++ +++++..++.|.+|++....       .       .........+..++|+|+|+++++++ .++.|
T Consensus       157 ~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          157 LHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             EEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             ceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            46788866 565 44555568999999887543       2       11233456688999999999887776 68999


Q ss_pred             EEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC--CCcEEEEECC--Cce--EEEEeccCCCcee
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE--DKTVCLWDVT--RRV--SIRRFNHKKGVVT  202 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~--dg~v~iwd~~--~~~--~~~~~~~~~~~v~  202 (350)
                      .+|++..+......     .......+...+..++|+|++  |++++.  ++.|.+|++.  +++  .+..+.. ...+.
T Consensus       236 ~v~~~~~g~~~~~~-----~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~  309 (361)
T 3scy_A          236 IAFRYADGMLDEIQ-----TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPR  309 (361)
T ss_dssp             EEEEEETTEEEEEE-----EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCC
T ss_pred             EEEEecCCceEEeE-----EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCc
Confidence            99998854322111     111223344567899999999  555554  5899999985  444  4555554 55788


Q ss_pred             EEEEEccCCeEEeeecCccccccc
Q 045370          203 NLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      .++|+|+|++|++++.+...+.++
T Consensus       310 ~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          310 NFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEE
T ss_pred             eEEECCCCCEEEEEECCCCCEEEE
Confidence            999999999998887665444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=1.6e-16  Score=156.43  Aligned_cols=187  Identities=9%  Similarity=0.050  Sum_probs=142.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +|||||++|+++ .++.|.+||+....                +..+... ..........|...+.+++|+++++.+++
T Consensus       251 ~~SpDG~~la~~-~~~~i~~~d~~~~~----------------l~~l~~~-~~~~~~~~~~~~~~v~~~~~S~pdG~~la  312 (1045)
T 1k32_A          251 HLNTDGRRILFS-KGGSIYIFNPDTEK----------------IEKIEIG-DLESPEDRIISIPSKFAEDFSPLDGDLIA  312 (1045)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCC----------------EEECCCC-CCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred             eEcCCCCEEEEE-eCCEEEEecCCceE----------------eeeeccC-cccccccccccccccceeeecCCCCCEEE
Confidence            689999999888 48999999984210                0000000 00001112346678999999724777788


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEecCC-ceeEEEEcCCCcEEEEEccCCeEE-EEeCCccccccccccccccceeeeccCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVYPQ-AVTAIAFHPGEQLLFAGSIDGRIF-VSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +++ ++.|.+|++..+.......+.. .+..++|+ +|+.|+.++.++.+. +||+.....           ..+.+|..
T Consensus       313 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-----------~~l~~~~~  379 (1045)
T 1k32_A          313 FVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-----------EKFEENLG  379 (1045)
T ss_dssp             EEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-----------EECCCCCC
T ss_pred             EEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-----------eEecCCcc
Confidence            777 8899999999887665555666 89999999 999999988888888 889874321           13336778


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+..++|+|++  |++++.++.|++||+.+++....+..|.+.+.+++|+|+|++|++++.+
T Consensus       380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence            89999999999  8899999999999999999888777788999999999999999877653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.71  E-value=1.4e-15  Score=130.18  Aligned_cols=148  Identities=11%  Similarity=0.099  Sum_probs=109.6

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccC-CceEEEEeeCCCcEEEEEeC
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKS-SVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~l~s~~~   85 (350)
                      ++|++++.++.|.+||+.+                           ......+. ++.. .+..++|++.+..++++++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK---------------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT---------------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCC---------------------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC
Confidence            4789999999999999982                           33333332 2222 47788887644455667777


Q ss_pred             CCcEEEEeCCCCceEEEEecCC------ceeEEEEcCCCcEEEEEc------------cCCeEEEEeCCccccccccccc
Q 045370           86 DATCKVWDLGSGILIQTQVYPQ------AVTAIAFHPGEQLLFAGS------------IDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      ++.|.+||+.+++.+..+....      .+..++|+|+++++++++            .++.|.+||+.++...      
T Consensus        55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------  128 (337)
T 1pby_B           55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------  128 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------
T ss_pred             CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE------
Confidence            8999999999999887766443      688999999999988886            5799999999854322      


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                          ..+.. ...+.+++|+|++  ++++  ++.|++||+.+++.+..+.
T Consensus       129 ----~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~  171 (337)
T 1pby_B          129 ----KAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             ----EEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred             ----EEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence                12222 3457788999998  6666  6889999999888776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.71  E-value=3.3e-16  Score=148.00  Aligned_cols=143  Identities=14%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             ceEEEEeeCCCcEEEEEe---------------------------------CCCcEEEEeCCCCceEEEE---ecCCcee
Q 045370           67 VTGLLTISGGTTFFVSSS---------------------------------LDATCKVWDLGSGILIQTQ---VYPQAVT  110 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~---------------------------------~d~~v~vwd~~~~~~~~~~---~~~~~v~  110 (350)
                      +.++.|+| ++++|++++                                 .+..|.+||+.+++.....   .+...+.
T Consensus       183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence            57888865 778888877                                 4467999999988765543   3556799


Q ss_pred             EEEEcCCCcEEEEEccCC-----eEEEEeCCccccccccccccccceee-eccC---CceEEEEecC--Ce--EEEEeCC
Q 045370          111 AIAFHPGEQLLFAGSIDG-----RIFVSPLKFLLLEDHFIVGEDQHSVL-KGHN---GSITALAFSA--SH--LISASED  177 (350)
Q Consensus       111 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~--~~--l~s~~~d  177 (350)
                      +++|+|+|+.|++++.++     .|++||+.++.....         .. ..+.   ..+.++.|+|  ++  +++++.|
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---------~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~  332 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT---------LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD  332 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE---------EEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE---------EEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence            999999999999987775     999999986521110         11 1122   2346789999  88  7788889


Q ss_pred             CcEEEEECC-CceEEEEeccCCCceeE-EEEEccCCeEEeeecC
Q 045370          178 KTVCLWDVT-RRVSIRRFNHKKGVVTN-LVVIRQSSLLSEVSNC  219 (350)
Q Consensus       178 g~v~iwd~~-~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~~~  219 (350)
                      +.++||++. ++..+..+..+...+.+ ++|+|+++.|+.++.+
T Consensus       333 g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          333 GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            999999876 67777788777777877 7999999987766554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=3.6e-17  Score=154.90  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=129.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC---CceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS---SVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~   77 (350)
                      ++|+|||+++++ +.|++|++||+.                           .+.....+..|..   .+.+++|+| ++
T Consensus        21 ~~~s~dg~~~~~-~~d~~i~~~~~~---------------------------~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg   71 (719)
T 1z68_A           21 PNWISGQEYLHQ-SADNNIVLYNIE---------------------------TGQSYTILSNRTMKSVNASNYGLSP-DR   71 (719)
T ss_dssp             CEESSSSEEEEE-CTTSCEEEEESS---------------------------SCCEEEEECHHHHHTTTCSEEEECT-TS
T ss_pred             cEECCCCeEEEE-cCCCCEEEEEcC---------------------------CCcEEEEEccccccccceeeEEECC-CC
Confidence            479999965554 469999999998                           3343334444433   488999965 77


Q ss_pred             cEEEEEeC---------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370           78 TFFVSSSL---------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE  148 (350)
Q Consensus        78 ~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  148 (350)
                      ++|++++.         ++.|++||+.+++.+........+..++|+|||+.|+.+. ++.|++||+.++..... ....
T Consensus        72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~  149 (719)
T 1z68_A           72 QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNG  149 (719)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCCC
T ss_pred             CeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCC
Confidence            88888776         7899999999987632122245688999999999999885 78999999986543210 0011


Q ss_pred             ccceeeeccCCce---------EEEEecCCe--EEEEeCCC----------------------------------cEEEE
Q 045370          149 DQHSVLKGHNGSI---------TALAFSASH--LISASEDK----------------------------------TVCLW  183 (350)
Q Consensus       149 ~~~~~~~~~~~~i---------~~~~~~~~~--l~s~~~dg----------------------------------~v~iw  183 (350)
                      .....+.++...|         .+++|+|+|  |++++.|.                                  .|++|
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            1111222333222         589999999  77776552                                  78899


Q ss_pred             ECCCceEE--------EEeccCCCceeEEEEEccCCeEEeee
Q 045370          184 DVTRRVSI--------RRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       184 d~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      |+.+++..        ..+..|...+.+++|+||++++++..
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~  271 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL  271 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe
Confidence            99987642        12335778899999999988777643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=5.8e-16  Score=146.70  Aligned_cols=183  Identities=10%  Similarity=-0.015  Sum_probs=127.3

Q ss_pred             CeecCCCCEEEEEeCC---------CcEEEEeCccccccccccccccccccccEEEeeccccccc--eeeeccccCCceE
Q 045370            1 MVFSDDGFLLISGSDD---------GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL--LHYSLEHKSSVTG   69 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~   69 (350)
                      ++|||||++|++++.+         +.|.+||+.+                           +..  +.....|...+..
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~---------------------------~~~~~l~~~~~~~~~~~~  118 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH---------------------------GDPQSLDPPEVSNAKLQY  118 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS---------------------------CCCEECCCTTCCSCCCSB
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCC---------------------------CceEeccCCccccccccc
Confidence            4799999999999875         7888999983                           222  2222345556888


Q ss_pred             EEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-CCc------------------eeEEEEcCCCcEEEEEccCC--
Q 045370           70 LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-PQA------------------VTAIAFHPGEQLLFAGSIDG--  128 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~l~~~~~dg--  128 (350)
                      ++|+| +++.|+.++. +.|.+||+.+++....... ...                  +.+++|+|||++|++++.|+  
T Consensus       119 ~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~  196 (723)
T 1xfd_A          119 AGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR  196 (723)
T ss_dssp             CCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             cEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc
Confidence            88866 6777888775 7999999999877665432 222                  37899999999999887553  


Q ss_pred             --------------------------------eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE
Q 045370          129 --------------------------------RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA  174 (350)
Q Consensus       129 --------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~  174 (350)
                                                      .|++||+.++........    ......+...+..++|+|++  +++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~----~~~~~~~~~~~~~~~~SpDg~~l~~~  272 (723)
T 1xfd_A          197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP----PDDPRMREYYITMVKWATSTKVAVTW  272 (723)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC----CCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC----CccCCCccceeEEEEEeCCCeEEEEE
Confidence                                            788888875432110000    00112246789999999999  5454


Q ss_pred             eC----CCcEEEEECCCceEEEEecc-CCCce----eEEEEEccCCeEEee
Q 045370          175 SE----DKTVCLWDVTRRVSIRRFNH-KKGVV----TNLVVIRQSSLLSEV  216 (350)
Q Consensus       175 ~~----dg~v~iwd~~~~~~~~~~~~-~~~~v----~~l~~~~~~~~l~~~  216 (350)
                      +.    +..|++||+.+++....+.. +.+.+    ..++|+|+|+.|+..
T Consensus       273 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            32    35799999999887766543 33443    378999999977754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=2.8e-15  Score=129.07  Aligned_cols=193  Identities=10%  Similarity=0.010  Sum_probs=130.2

Q ss_pred             CeecCCCCEEE-EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-c-----cCCceEEEEe
Q 045370            1 MVFSDDGFLLI-SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-H-----KSSVTGLLTI   73 (350)
Q Consensus         1 i~~s~dg~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~~~~~   73 (350)
                      ++|+|||++++ ++..++.|.+||+.+                           ......+.. +     ...+.+++|+
T Consensus        48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s  100 (349)
T 1jmx_B           48 AMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------------CKNTFHANLSSVPGEVGRSMYSFAIS  100 (349)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT---------------------------TEEEEEEESCCSTTEEEECSSCEEEC
T ss_pred             eEECCCCCEEEEEeCCCCcEEEEeCCC---------------------------CcEEEEEEcccccccccccccceEEC
Confidence            47899998654 555789999999983                           222222221 1     2347788886


Q ss_pred             eCCCcEEEEEeCC------------CcEEEEeCCCCc---eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           74 SGGTTFFVSSSLD------------ATCKVWDLGSGI---LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        74 ~~~~~~l~s~~~d------------~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      + +++++++++.+            +.|.+||+.+++   .+....+...+.+++|+|+++ +++++.  .|.+||+.++
T Consensus       101 p-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~  176 (349)
T 1jmx_B          101 P-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTG  176 (349)
T ss_dssp             T-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTC
T ss_pred             C-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCC
Confidence            5 67777777755            899999998854   334456666789999999999 666543  4999999876


Q ss_pred             cccccccccc--cc--------------------------------------------------------ceeeeccCCc
Q 045370          139 LLEDHFIVGE--DQ--------------------------------------------------------HSVLKGHNGS  160 (350)
Q Consensus       139 ~~~~~~~~~~--~~--------------------------------------------------------~~~~~~~~~~  160 (350)
                      ..........  ..                                                        ...+..+...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (349)
T 1jmx_B          177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL  256 (349)
T ss_dssp             CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence            5432211110  00                                                        0000112235


Q ss_pred             eEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          161 ITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       161 i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +..++++| ++  ++++  ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.+ ..+.+|+.
T Consensus       257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~v~v~d~  323 (349)
T 1jmx_B          257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTF-NDLAVFNP  323 (349)
T ss_dssp             EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBS-SEEEEEET
T ss_pred             ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCC-CeEEEEec
Confidence            67788899 88  5555  88999999999999888763 3457899999999988876544 44445544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.66  E-value=4.4e-15  Score=140.30  Aligned_cols=146  Identities=11%  Similarity=0.156  Sum_probs=105.8

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCC-----cEEEEeCCCC-ceEEEEe--cCC---ceeEEEEcC--CCcEEEEEccCC
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDA-----TCKVWDLGSG-ILIQTQV--YPQ---AVTAIAFHP--GEQLLFAGSIDG  128 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~-----~v~vwd~~~~-~~~~~~~--~~~---~v~~~~~~~--~~~~l~~~~~dg  128 (350)
                      .|...+.+++|+| +++++++++.++     .|.+||+.++ .......  +..   .+.+++|+|  +|+++++++.||
T Consensus       255 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          255 PKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             CTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence            5667889999966 777788877775     8999999998 4333332  222   246789999  999999999999


Q ss_pred             eEEEEeCCccccccccccccccceeeeccCCceEE-EEecCCe--EE-EEeCCC----cEEEEECCCceEEEEeccCCCc
Q 045370          129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA-LAFSASH--LI-SASEDK----TVCLWDVTRRVSIRRFNHKKGV  200 (350)
Q Consensus       129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--l~-s~~~dg----~v~iwd~~~~~~~~~~~~~~~~  200 (350)
                      .+++|.+..         .......+..+...+.. ++|+|++  |+ +++.++    .|+.||+.++. +..+. +...
T Consensus       334 ~~~l~~~~~---------~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~  402 (706)
T 2z3z_A          334 WNHLYLYDT---------TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESG  402 (706)
T ss_dssp             SCEEEEEET---------TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSS
T ss_pred             ccEEEEEEC---------CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCc
Confidence            999998762         12223355667777876 7999998  44 444554    67778887765 44444 5677


Q ss_pred             eeEEEEEccCCeEEeeecC
Q 045370          201 VTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       201 v~~l~~~~~~~~l~~~~~~  219 (350)
                      +.+++|+|+|++++.++.+
T Consensus       403 ~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          403 MHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             EEEEEECTTSSEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEecC
Confidence            8999999999988766443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.65  E-value=2.8e-15  Score=138.43  Aligned_cols=170  Identities=10%  Similarity=0.095  Sum_probs=126.9

Q ss_pred             eecCCCC--EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            2 VFSDDGF--LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         2 ~~s~dg~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      +|+|||+  ++++++ ++.+.+||+.+                           +.... +..+..  .+++|+| ++++
T Consensus       116 ~~s~dg~~~~~~s~~-~~~~~l~d~~~---------------------------g~~~~-l~~~~~--~~~~~sp-DG~~  163 (582)
T 3o4h_A          116 SGVDTGEAVVFTGAT-EDRVALYALDG---------------------------GGLRE-LARLPG--FGFVSDI-RGDL  163 (582)
T ss_dssp             EEEECSSCEEEEEEC-SSCEEEEEEET---------------------------TEEEE-EEEESS--CEEEEEE-ETTE
T ss_pred             eeCCCCCeEEEEecC-CCCceEEEccC---------------------------CcEEE-eecCCC--ceEEECC-CCCE
Confidence            6888885  344444 44555999872                           22222 222222  7888866 7788


Q ss_pred             EEEEeCC----CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC--eEEEEeCCcccccccccccccccee
Q 045370           80 FVSSSLD----ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG--RIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        80 l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +++++.+    +.|.+||+.+++......+...+..++|+|||+.|+++..++  .|++||+.++...           .
T Consensus       164 la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-----------~  232 (582)
T 3o4h_A          164 IAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-----------D  232 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-----------E
T ss_pred             EEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-----------E
Confidence            8887777    789999999998876667888899999999999999888888  8999999854322           3


Q ss_pred             eeccCCceEEEE--------ecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          154 LKGHNGSITALA--------FSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~--------~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      +.+|...+..+.        |+|++  +++++.|+.+++|++  ++...   .+.+.+.+++|+ +++++++++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCC
Confidence            345555555555        99998  888899999999999  76655   244678999999 999888777663

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=1.3e-15  Score=144.60  Aligned_cols=184  Identities=14%  Similarity=0.110  Sum_probs=126.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC-----ceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS-----VTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~   75 (350)
                      ++|+|||.+++++  ||+|++||+.+                           +.....+.+|...     ...+.|+| 
T Consensus        22 ~~w~~dg~~~~~~--~~~i~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sp-   71 (740)
T 4a5s_A           22 LRWISDHEYLYKQ--ENNILVFNAEY---------------------------GNSSVFLENSTFDEFGHSINDYSISP-   71 (740)
T ss_dssp             EEECSSSEEEEEE--TTEEEEEETTT---------------------------CCEEEEECTTTTTTCCSCCCEEEECT-
T ss_pred             cEECCCCcEEEEc--CCcEEEEECCC---------------------------CceEEEEechhhhhhcccccceEECC-
Confidence            4799999999886  99999999983                           3333344444432     23466655 


Q ss_pred             CCcEEEEEeCC---------CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           76 GTTFFVSSSLD---------ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        76 ~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      ++++++.++.+         +.+.+||+.+++......+...+...+|+|||+.|+.+. ++.|++|++..+.... ...
T Consensus        72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-lt~  149 (740)
T 4a5s_A           72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-ITW  149 (740)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-CCS
T ss_pred             CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-EcC
Confidence            78888888876         556799999998766556678899999999999998884 7899999998654221 111


Q ss_pred             ccccceeeeccCC---------ceEEEEecCCe--EEEEeCCC------------------------------------c
Q 045370          147 GEDQHSVLKGHNG---------SITALAFSASH--LISASEDK------------------------------------T  179 (350)
Q Consensus       147 ~~~~~~~~~~~~~---------~i~~~~~~~~~--l~s~~~dg------------------------------------~  179 (350)
                      .......+.++..         ....+.|||+|  |+.++.|.                                    .
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            1111112223322         22358999999  76664321                                    5


Q ss_pred             EEEEECCC---c---eEEEEec------cCCCceeEEEEEccCCeEEeee
Q 045370          180 VCLWDVTR---R---VSIRRFN------HKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       180 v~iwd~~~---~---~~~~~~~------~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      |++||+.+   +   +.. .+.      .|...+..++|+|||++++...
T Consensus       230 l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             EEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEe
Confidence            88899988   7   333 333      2677899999999999666443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.64  E-value=1.5e-14  Score=125.57  Aligned_cols=197  Identities=12%  Similarity=0.047  Sum_probs=128.3

Q ss_pred             CeecCCCCE--EEEEe-------------CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee----c
Q 045370            1 MVFSDDGFL--LISGS-------------DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS----L   61 (350)
Q Consensus         1 i~~s~dg~~--l~sg~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   61 (350)
                      ++|+|||++  +++++             .+|.+.+|++...                          +......    .
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--------------------------g~~~~~~~~~~~  141 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--------------------------GKLEKNVQNYEY  141 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--------------------------CCEEEEEEEEEC
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC--------------------------CcCcceEeeEEe
Confidence            478999994  55553             6899999998621                          1111111    1


Q ss_pred             cccCCceEEEEeeCCCcEEEEEe-CCCcEEEEeCC-CCceEE--EEe---cCCceeEEEEcCCCcEEEEEcc-CCeEEEE
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSS-LDATCKVWDLG-SGILIQ--TQV---YPQAVTAIAFHPGEQLLFAGSI-DGRIFVS  133 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~-~d~~v~vwd~~-~~~~~~--~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~  133 (350)
                      .+...+.+++|+| ++++++++. .++.|.+||+. +++...  .+.   +...+..++|+|+|+++++++. ++.|.+|
T Consensus       142 ~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          142 QENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence            2456788999866 666666655 46899999998 776543  233   2566899999999999887764 6899999


Q ss_pred             eCCc--cccccccccccccceee----eccCC------ceEEEE-ecCCe--EEEEeCC-C-----cEEEEECC-CceEE
Q 045370          134 PLKF--LLLEDHFIVGEDQHSVL----KGHNG------SITALA-FSASH--LISASED-K-----TVCLWDVT-RRVSI  191 (350)
Q Consensus       134 d~~~--~~~~~~~~~~~~~~~~~----~~~~~------~i~~~~-~~~~~--l~s~~~d-g-----~v~iwd~~-~~~~~  191 (350)
                      ++..  +.....    ...+..+    .+|..      .+..++ |+|++  |++++.+ +     .|.+|++. +++..
T Consensus       221 ~~~~~~g~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          221 VIDPATHMPVYT----HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EECTTTCCEEEE----EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEeCCCCcEEEc----cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            7652  221100    0000111    12232      588999 99999  6555533 2     89999996 56654


Q ss_pred             E---EeccCCCceeEEEEEc---cCCeEEeeecCccccccccC
Q 045370          192 R---RFNHKKGVVTNLVVIR---QSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       192 ~---~~~~~~~~v~~l~~~~---~~~~l~~~~~~~~~~~~~~~  228 (350)
                      .   ....+...+..++|+|   +|++|++++.+...+.+|..
T Consensus       297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            3   2333445678899999   89999988776555545433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.64  E-value=1.4e-14  Score=125.86  Aligned_cols=181  Identities=10%  Similarity=0.176  Sum_probs=120.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCc-cccccccccccccccccccEEEeeccccccceee--eccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMT-RLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY--SLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~   77 (350)
                      ++|+|||++|++++.+ .|.+|++. +                           +.....  ...+ +.+.+++++| ++
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~---------------------------g~~~~~~~~~~~-g~~~~~~~sp-dg   94 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSP---------------------------TEIVHEASHPIG-GHPRANDADT-NT   94 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEET---------------------------TEEEEEEEEECC-SSGGGGCTTS-CC
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCC---------------------------CCEEEeeEeecC-CCCccEEECC-CC
Confidence            4789999999999888 99999986 2                           111111  1111 2244566655 56


Q ss_pred             c--EEEEEe-------------CCCcEEEEeCC-CCceEEEEe-----cCCceeEEEEcCCCcEEEEEc-cCCeEEEEeC
Q 045370           78 T--FFVSSS-------------LDATCKVWDLG-SGILIQTQV-----YPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPL  135 (350)
Q Consensus        78 ~--~l~s~~-------------~d~~v~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~  135 (350)
                      +  +++++.             .++.+.+|++. .++....+.     +...+.+++|+|+|+++++++ .++.|++|++
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence            6  344553             68999999997 466544332     456799999999999888765 4689999999


Q ss_pred             C-ccccccccccccccceeee--ccCCceEEEEecCCe--EEEEeC-CCcEEEEECC--CceEE---EEe---cc----C
Q 045370          136 K-FLLLEDHFIVGEDQHSVLK--GHNGSITALAFSASH--LISASE-DKTVCLWDVT--RRVSI---RRF---NH----K  197 (350)
Q Consensus       136 ~-~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~--l~s~~~-dg~v~iwd~~--~~~~~---~~~---~~----~  197 (350)
                      . ++....        ...+.  .|...+..++|+|++  +++++. ++.|.+|++.  +++..   ..+   ..    |
T Consensus       175 ~~~g~~~~--------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          175 LASGEVEL--------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             CTTSCEEE--------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CCCCCEEE--------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            7 433211        11222  245678999999999  666664 7899999765  55542   122   21    1


Q ss_pred             CC------ceeEEE-EEccCCeEEeeecC
Q 045370          198 KG------VVTNLV-VIRQSSLLSEVSNC  219 (350)
Q Consensus       198 ~~------~v~~l~-~~~~~~~l~~~~~~  219 (350)
                      ..      .+..++ |+|+|++|++++..
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             ccccccccccccEEEECCCCCEEEEECCC
Confidence            21      478999 99999988866543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=143.44  Aligned_cols=183  Identities=9%  Similarity=0.043  Sum_probs=125.0

Q ss_pred             CeecCCCCEEEEEeC---------CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEE
Q 045370            1 MVFSDDGFLLISGSD---------DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLL   71 (350)
Q Consensus         1 i~~s~dg~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   71 (350)
                      ++|||||++|++++.         ++.|++||+.+                           +..... ......+..++
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~---------------------------g~~~~~-~~l~~~~~~~~  116 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN---------------------------GEFVRG-NELPRPIQYLC  116 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT---------------------------TEECCS-SCCCSSBCCEE
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCC---------------------------Cccccc-eecCcccccce
Confidence            479999999999876         78999999983                           221000 01124578888


Q ss_pred             EeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCc-----------------eeEEEEcCCCcEEEEEccCC----
Q 045370           72 TISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQA-----------------VTAIAFHPGEQLLFAGSIDG----  128 (350)
Q Consensus        72 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~-----------------v~~~~~~~~~~~l~~~~~dg----  128 (350)
                      |+| +++.|+.+. ++.|++||+.++.......  +...                 ..+++|+|||++|+.++.|.    
T Consensus       117 ~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~  194 (719)
T 1z68_A          117 WSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP  194 (719)
T ss_dssp             ECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred             ECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence            866 677787775 7899999999887654321  1111                 25899999999999987652    


Q ss_pred             ------------------------------eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC
Q 045370          129 ------------------------------RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE  176 (350)
Q Consensus       129 ------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~  176 (350)
                                                    .|++||+..+......  .......+.+|...+..++|+|++  +++...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~  272 (719)
T 1z68_A          195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ--EVPVPAMIASSDYYFSWLTWVTDERVCLQWLK  272 (719)
T ss_dssp             EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE--ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred             eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee--EccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence                                          7889998865431000  000001344688889999999999  444332


Q ss_pred             C----CcEEEEE----CCCceEEEEe----ccCCCcee-----EEEEEccCCeEEe
Q 045370          177 D----KTVCLWD----VTRRVSIRRF----NHKKGVVT-----NLVVIRQSSLLSE  215 (350)
Q Consensus       177 d----g~v~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~~  215 (350)
                      .    ..|++||    +.+++....+    ..|.+.+.     .+.|+|+|+.++.
T Consensus       273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          273 RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            2    2488999    8888766555    35666676     8899999996654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=6.8e-14  Score=119.70  Aligned_cols=188  Identities=12%  Similarity=0.099  Sum_probs=133.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee---------ccccCCceEEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS---------LEHKSSVTGLL   71 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~   71 (350)
                      |+|+|+|+++++...++.|++||.....                          ..+..+         ..+...+.+++
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~--------------------------~~~~~~~~~~~~g~~~~~~~~P~~ia  149 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKE--------------------------GPLLILGRSMQPGSDQNHFCQPTDVA  149 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSS--------------------------CCSEEESBTTBCCCSTTCCSSEEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCe--------------------------EEEEEecccCCCCCCccccCCCcEEE
Confidence            5789999999988889999999976210                          011111         24455788999


Q ss_pred             EeeCCCcEEEEEe-CCCcEEEEeCCCCceEEEEecC-----------CceeEEEEcCC-CcEEEEEccCCeEEEEeCCcc
Q 045370           72 TISGGTTFFVSSS-LDATCKVWDLGSGILIQTQVYP-----------QAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        72 ~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      +.+.++.++++.+ .++.|++|+ .++..+..+...           ..+..++++|+ +.++++...++.|++||..++
T Consensus       150 ~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          150 VEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             ECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             EeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence            9775778888876 689999999 557766665421           23889999998 777777778899999998854


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe-EEEE-------eCCCcEEEEECCCceEEEEec---cCCCceeEEEEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISA-------SEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVI  207 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~-------~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~  207 (350)
                      ......        ....+...+..++++|.. +++.       ..+..|++||+.+++.+..+.   .+...+.+++++
T Consensus       229 ~~~~~~--------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          229 EFVREI--------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             CEEEEE--------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred             cEEEEE--------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence            432211        112456678899999932 2222       234589999999999998873   566778999999


Q ss_pred             ccCCeEEeeecCcccc
Q 045370          208 RQSSLLSEVSNCQRKL  223 (350)
Q Consensus       208 ~~~~~l~~~~~~~~~~  223 (350)
                      |+|.++++...+.+++
T Consensus       301 ~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          301 EDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTSEEEEEESSSCCEE
T ss_pred             CCCCEEEEECCCCEEE
Confidence            9997666555555444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=5.5e-14  Score=121.16  Aligned_cols=177  Identities=11%  Similarity=0.044  Sum_probs=128.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |++++...+|++|+.++ +++|++............                .... .....+.. |..++|   ++.+|
T Consensus        43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~----------------~~~~-~~~~~lp~-V~~l~f---d~~~L  100 (388)
T 1xip_A           43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDST----------------PLTF-KWEKEIPD-VIFVCF---HGDQV  100 (388)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC----------------CCCC-SEEEECTT-EEEEEE---ETTEE
T ss_pred             EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc----------------cccc-eEEeeCCC-eeEEEE---CCCEE
Confidence            47889999999999985 666998743211000000                0011 11223556 999999   56778


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +++ .++.|++||+.+...... ..+..++.++.+.+.  .+++++.||.|.+||+..+...              .+..
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--------------~~~~  163 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--------------QLAQ  163 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE--------------EEEE
T ss_pred             EEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc--------------cccC
Confidence            888 889999999987654443 346677888777654  3888899999999999854321              1446


Q ss_pred             ceEEEEecCCeEEEEeCCCcEEEEECCCceE--EEEe------c---cCCCceeEEEEEccCCeEEee
Q 045370          160 SITALAFSASHLISASEDKTVCLWDVTRRVS--IRRF------N---HKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       160 ~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      .|+|++|+|+|++.|..||.+++|+...+..  ..++      .   +|...|.++.|.+++.++++-
T Consensus       164 ~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          164 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            8999999999988999999999999988775  5566      2   367889999999999998863

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=1.3e-12  Score=109.34  Aligned_cols=179  Identities=6%  Similarity=0.077  Sum_probs=129.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee------ccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS------LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~   74 (350)
                      |+++++|+++++...++.|.+||...                            .....+      .++...+.++++.+
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~g----------------------------~~~~~~~~~~~~~~~~~~p~~i~~~~   86 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKEG----------------------------RFKFQFGECGKRDSQLLYPNRVAVVR   86 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTS----------------------------CEEEEECCBSSSTTCBSSEEEEEEET
T ss_pred             EEECCCCCEEEEECCCCEEEEECCCC----------------------------cEEEEecccCCCcccccCceEEEEEc
Confidence            47899999888888899999999761                            111111      23456778888865


Q ss_pred             CCCcEEEEEeC-CCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           75 GGTTFFVSSSL-DATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        75 ~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +++.++++... ++.|.+|| .+++.+..+.  +...+..++++|+++.+++...++.|.+||.... .          .
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~----------~  154 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V----------L  154 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E----------E
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E----------E
Confidence            56776666643 88999999 5677666654  2346899999999998888788899999996521 1          1


Q ss_pred             eeee--ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccC--CCceeEEEEEccCCeEEeeecCc
Q 045370          152 SVLK--GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHK--KGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       152 ~~~~--~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+.  .+...+..++++|++  +++...++.|++||.. ++.+..+..+  ...+..++++|+|+++++...+.
T Consensus       155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence            1221  344568999999998  5555678999999984 5566666533  35788999999999888665554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.56  E-value=4.3e-13  Score=117.21  Aligned_cols=177  Identities=15%  Similarity=0.042  Sum_probs=123.2

Q ss_pred             eecCCCCEEEEEeC-CCc--EEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSD-DGM--ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +|||||++|+.++. +|.  |.+||+.                           .........++...+..+.|+| ++.
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~---------------------------~g~~~~lt~~~~~~~~~~~~sp-dg~   93 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLN---------------------------TQVATQLTEGRGDNTFGGFLSP-DDD   93 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETT---------------------------TCEEEECCCSSCBCSSSCEECT-TSS
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCC---------------------------CCceEEeeeCCCCCccceEEcC-CCC
Confidence            69999999999887 674  7777877                           2344444445555555667755 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCC-ceeEE--EEcCCCcEEEEE----------------------ccCCeEEEE
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQ-AVTAI--AFHPGEQLLFAG----------------------SIDGRIFVS  133 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~----------------------~~dg~i~i~  133 (350)
                      .|+.++.++.|.+||+.+++.......+. .+...  .++|++..++..                      ..+..|++|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            89999989999999999998776655433 33333  348999988743                      234689999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecC-Ce--EEEEeCC------CcEEEEECCCceEEEEeccCC--Ccee
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA-SH--LISASED------KTVCLWDVTRRVSIRRFNHKK--GVVT  202 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--l~s~~~d------g~v~iwd~~~~~~~~~~~~~~--~~v~  202 (350)
                      |+.++..           ..+..+...+..+.|+| ++  |+..+.+      ..|.++|+..+.. ..+..+.  ..+.
T Consensus       174 d~~~g~~-----------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~  241 (388)
T 3pe7_A          174 DLKTGES-----------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCT  241 (388)
T ss_dssp             ETTTCCE-----------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEE
T ss_pred             ECCCCce-----------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccc
Confidence            9885432           24445667789999999 88  6555543      3788888876543 3343333  3578


Q ss_pred             EEEEEccCCeEEeeec
Q 045370          203 NLVVIRQSSLLSEVSN  218 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~  218 (350)
                      .+.|+|+|+.|+..+.
T Consensus       242 ~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEECTTSSCEEEEEE
T ss_pred             cceECCCCCEEEEEec
Confidence            8999999997765544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=3.7e-13  Score=116.58  Aligned_cols=182  Identities=12%  Similarity=0.124  Sum_probs=114.6

Q ss_pred             CeecCCCCEEEEEe-CCCcEEEEeCcccccccccccccccccccc-EEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQR-LIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|||++|++++ .++.|.+|++.........          . +..     ..........+...+..++|+| +++
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~----------~~l~~-----~~~~~~~~~~~~~~~~~~~~sp-dg~  223 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNK----------EKFLT-----KGTPEAFKVAPGSGPRHLIFNS-DGK  223 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC----------CCCEE-----EEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc----------cceee-----cccccceecCCCCCCeEEEEcC-CCC
Confidence            47999999766555 5899999998731100000          0 000     0000111223445667888866 666


Q ss_pred             EEEEEe-CCCcEEEEeCCCCceEEE--Ee----cCCceeEEEEcCCCcEEEEEccC--CeEEEEeCCc--cccccccccc
Q 045370           79 FFVSSS-LDATCKVWDLGSGILIQT--QV----YPQAVTAIAFHPGEQLLFAGSID--GRIFVSPLKF--LLLEDHFIVG  147 (350)
Q Consensus        79 ~l~s~~-~d~~v~vwd~~~~~~~~~--~~----~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~--~~~~~~~~~~  147 (350)
                      ++++++ .++.|.+|++.++.....  +.    +...+..++|+|+|++|+++..+  +.|.+|++..  +..       
T Consensus       224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-------  296 (361)
T 3scy_A          224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-------  296 (361)
T ss_dssp             EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-------
T ss_pred             EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-------
Confidence            665555 689999999997765332  22    22346799999999998776654  8999999862  211       


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEE--ECCCceEEEEec-cCCCceeEEEEE
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLW--DVTRRVSIRRFN-HKKGVVTNLVVI  207 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iw--d~~~~~~~~~~~-~~~~~v~~l~~~  207 (350)
                       ..+..+.. ...+.+++|+|++  |++++ .++.|.+|  |..+++...... .+...+.|+.|.
T Consensus       297 -~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          297 -TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             -EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             -EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence             11122333 4567899999998  66666 67899996  555777655432 244578888886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=2.8e-12  Score=112.00  Aligned_cols=178  Identities=12%  Similarity=-0.072  Sum_probs=115.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEE-eeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLT-ISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~   79 (350)
                      ++|||||++|+.++.++.|++||+.+                           .........+...+....| .++++.+
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~---------------------------g~~~~~~~~~~~~~~~~~~~~~~dg~~  138 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLAT---------------------------LEENVVYQVPAEWVGYGTWVANSDCTK  138 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTT---------------------------CCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCC---------------------------CcceeeeechhhcccccceeECCCCCe
Confidence            37999999999999999999999983                           2222223333343433333 2446666


Q ss_pred             EEEE----------------------eCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEccC------CeE
Q 045370           80 FVSS----------------------SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSID------GRI  130 (350)
Q Consensus        80 l~s~----------------------~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i  130 (350)
                      ++..                      ..+..|.+||+.+++......+...+..+.|+| +|+.|+.+..+      ..|
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (388)
T 3pe7_A          139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM  218 (388)
T ss_dssp             EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred             eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence            6532                      244679999999998777777778899999999 99988876653      377


Q ss_pred             EEEeCCccccccccccccccceeeeccC--CceEEEEecCCe--EEEEeC-CC----cEEEEECCCceE--EEEeccCCC
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKGHN--GSITALAFSASH--LISASE-DK----TVCLWDVTRRVS--IRRFNHKKG  199 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~--l~s~~~-dg----~v~iwd~~~~~~--~~~~~~~~~  199 (350)
                      .++|.....           ...+..+.  ..+..+.|+|++  |+..+. ++    .|++||+.+++.  +..+..+..
T Consensus       219 ~~~d~~~~~-----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~  287 (388)
T 3pe7_A          219 WLINEDGTN-----------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH  287 (388)
T ss_dssp             EEEETTSCC-----------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred             EEEeCCCCc-----------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence            888776322           11233333  357788999999  544332 22    399999998874  333332100


Q ss_pred             ---ceeEEEEEccCCeEEee
Q 045370          200 ---VVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       200 ---~v~~l~~~~~~~~l~~~  216 (350)
                         ....+.|+|+|+.|+..
T Consensus       288 ~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          288 LMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             EEECTTSSEEEEEECCC---
T ss_pred             eeecCCCCeEccCCCcceeE
Confidence               12334799999988754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.50  E-value=7.8e-12  Score=104.52  Aligned_cols=181  Identities=8%  Similarity=0.097  Sum_probs=123.2

Q ss_pred             ee-cCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCc
Q 045370            2 VF-SDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~-s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~   78 (350)
                      ++ +++|+++++... ++.|.+||..                            ...+..+ ..+...+.++++.+ ++.
T Consensus        83 ~~~~~~g~l~v~~~~~~~~i~~~d~~----------------------------g~~~~~~~~~~~~~~~~i~~~~-~g~  133 (286)
T 1q7f_A           83 AVVRNSGDIIVTERSPTHQIQIYNQY----------------------------GQFVRKFGATILQHPRGVTVDN-KGR  133 (286)
T ss_dssp             EEETTTTEEEEEECGGGCEEEEECTT----------------------------SCEEEEECTTTCSCEEEEEECT-TSC
T ss_pred             EEEcCCCeEEEEcCCCCCEEEEECCC----------------------------CcEEEEecCccCCCceEEEEeC-CCC
Confidence            56 466766666543 7889999854                            2222222 23445678888866 667


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++++...++.|.+||.. ++.+..+.   +...+..++++++++.+++...++.|++||.....           +..+.
T Consensus       134 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------~~~~~  201 (286)
T 1q7f_A          134 IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-----------LRQIG  201 (286)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-----------EEEES
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-----------EEEEc
Confidence            77777788999999965 55555554   33468999999999988888889999999975211           11222


Q ss_pred             --ccCCceEEEEecCCe--EEEEeCCC-cEEEEECCCceEEEEeccCC--CceeEEEEEccCCeEEeeecCccccccc
Q 045370          156 --GHNGSITALAFSASH--LISASEDK-TVCLWDVTRRVSIRRFNHKK--GVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       156 --~~~~~i~~~~~~~~~--l~s~~~dg-~v~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                        ++...+..+++++++  +++...++ .|.+||. +++.+..+..+.  ..+.+++++|+|+++++ +.+ ..+.+|
T Consensus       202 ~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~-~~v~v~  276 (286)
T 1q7f_A          202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD-YRLYIY  276 (286)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT-TEEEEE
T ss_pred             cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC-CeEEEE
Confidence              223578999999998  55555565 9999996 466666665443  24779999999987775 444 334444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.49  E-value=2.2e-13  Score=129.28  Aligned_cols=180  Identities=9%  Similarity=0.026  Sum_probs=119.8

Q ss_pred             eecCCCCEEEEEeCC---------CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEE
Q 045370            2 VFSDDGFLLISGSDD---------GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLT   72 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   72 (350)
                      +|||||++|+.++.+         +.+.+||+.+                           +. ...+..|...+...+|
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~---------------------------~~-~~~l~~~~~~~~~~~~  119 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK---------------------------RQ-LITEERIPNNTQWVTW  119 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT---------------------------TE-ECCSSCCCTTEEEEEE
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCC---------------------------Cc-EEEcccCCCcceeeEE
Confidence            579999999999876         5667999982                           22 3345567778999999


Q ss_pred             eeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCC-----------------ceeEEEEcCCCcEEEEEccCC-----
Q 045370           73 ISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQ-----------------AVTAIAFHPGEQLLFAGSIDG-----  128 (350)
Q Consensus        73 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~-----------------~v~~~~~~~~~~~l~~~~~dg-----  128 (350)
                      +| +++.|+.+ .|+.|.+|++.++...+...  +..                 ....+.|+|||+.|+.++.|.     
T Consensus       120 SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~  197 (740)
T 4a5s_A          120 SP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL  197 (740)
T ss_dssp             CS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred             CC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence            66 67777777 47899999999887554321  111                 123589999999998876432     


Q ss_pred             -------------------------------eEEEEeCCc---cccccccccccccceeee------ccCCceEEEEecC
Q 045370          129 -------------------------------RIFVSPLKF---LLLEDHFIVGEDQHSVLK------GHNGSITALAFSA  168 (350)
Q Consensus       129 -------------------------------~i~i~d~~~---~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~  168 (350)
                                                     .|++||+.+   +...        ....+.      +|...+..++|+|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~wsp  269 (740)
T 4a5s_A          198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA--------TSIQITAPASMLIGDHYLCDVTWAT  269 (740)
T ss_dssp             EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC--------CEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred             EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc--------eEEEecCCccCCCCCeEEEEEEEeC
Confidence                                           355555553   2100        111222      3777899999999


Q ss_pred             Ce--EEEEe----CCCcEEEEECCCce----EEE--Ee--ccCCCcee-----EEEEEccCCeEE-eeecC
Q 045370          169 SH--LISAS----EDKTVCLWDVTRRV----SIR--RF--NHKKGVVT-----NLVVIRQSSLLS-EVSNC  219 (350)
Q Consensus       169 ~~--l~s~~----~dg~v~iwd~~~~~----~~~--~~--~~~~~~v~-----~l~~~~~~~~l~-~~~~~  219 (350)
                      ++  ++...    .+..|++||+.+++    +..  .+  ..|.+.+.     .+.|+|||+.++ ..+..
T Consensus       270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~  340 (740)
T 4a5s_A          270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE  340 (740)
T ss_dssp             TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred             CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC
Confidence            99  33332    23479999998876    221  22  34555544     789999999776 55543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.49  E-value=8.8e-13  Score=123.64  Aligned_cols=175  Identities=11%  Similarity=-0.014  Sum_probs=116.0

Q ss_pred             CeecCCCCEEEEEeCC----------CcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceE
Q 045370            1 MVFSDDGFLLISGSDD----------GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTG   69 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~   69 (350)
                      ++|||||++|++++.|          ..|++||+.+....                      .......+. .+...+..
T Consensus       135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~  192 (662)
T 3azo_A          135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----------------------DRSAVRELSDDAHRFVTG  192 (662)
T ss_dssp             EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----------------------CGGGSEESSCSCSSEECC
T ss_pred             cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc----------------------cCCceeEEEecCCCcccC
Confidence            4799999999998877          58999998720000                      002223333 45566777


Q ss_pred             EEEeeCCCcEEEEEeCCC--------cEEEEeCC-CC---ceEEEEe-cCCceeEEEEcCCCcEEEEEccCC--eEEEEe
Q 045370           70 LLTISGGTTFFVSSSLDA--------TCKVWDLG-SG---ILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDG--RIFVSP  134 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~--------~v~vwd~~-~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d  134 (350)
                      ++|+| ++++|+.++.++        .|.+||+. ++   ....... +...+..+.|+|+|+++++++.++  .|++||
T Consensus       193 ~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          193 PRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             CEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             ceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence            88865 777788776553        79999999 56   4444443 467899999999999888888888  677777


Q ss_pred             CCccccccccccccccceeeeccCC--------ceEEEEecCCe--EEEEeCCCcEEEE--ECCCceEEEEeccCCCcee
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNG--------SITALAFSASH--LISASEDKTVCLW--DVTRRVSIRRFNHKKGVVT  202 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~--l~s~~~dg~v~iw--d~~~~~~~~~~~~~~~~v~  202 (350)
                      +..+....          ....+..        .+..++|+|++  +++++. +.++||  |+.+++ +..+..+...+.
T Consensus       272 ~~~~~~~~----------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~  339 (662)
T 3azo_A          272 PATGAATQ----------LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA  339 (662)
T ss_dssp             TTTCCEEE----------SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE
T ss_pred             CCCCceee----------cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE
Confidence            65432211          1111111        14568888888  777777 888998  666665 667777777777


Q ss_pred             EEEEEccCC
Q 045370          203 NLVVIRQSS  211 (350)
Q Consensus       203 ~l~~~~~~~  211 (350)
                      .+. ++++.
T Consensus       340 ~~~-s~~~~  347 (662)
T 3azo_A          340 ATL-TVSGT  347 (662)
T ss_dssp             EEE-EEETT
T ss_pred             EEE-ecCCC
Confidence            661 45554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.48  E-value=2.3e-12  Score=111.54  Aligned_cols=87  Identities=9%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             EEEcCCCcEEEEEcc-----------CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCC
Q 045370          112 IAFHPGEQLLFAGSI-----------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDK  178 (350)
Q Consensus       112 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg  178 (350)
                      ++|+|+++.++++..           .+.|.+||+.+.          +.+..+..+.  +.+++|+|++  |++++. +
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----------~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----------QRVARIPGRD--ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----------EEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----------cEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence            677888777776543           347888888753          3333555555  8999999999  766666 9


Q ss_pred             cEEEEECCCc--eEEEEeccCCCceeEEEEEccCC
Q 045370          179 TVCLWDVTRR--VSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       179 ~v~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      .|.+||..++  +.+.++..+......++++|+|.
T Consensus       326 ~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          326 NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999999  99999865667778999999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=1.1e-12  Score=122.91  Aligned_cols=187  Identities=10%  Similarity=-0.013  Sum_probs=121.3

Q ss_pred             eecCCCCEEEEE--eCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCce---------EE
Q 045370            2 VFSDDGFLLISG--SDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVT---------GL   70 (350)
Q Consensus         2 ~~s~dg~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~   70 (350)
                      +|++++-++++.  +.++...||....                           ......+..|...+.         ..
T Consensus        30 ~~s~~~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~   82 (662)
T 3azo_A           30 GAVGDEVWWVAPRPAEAGRATLVRRRA---------------------------DGAEESALPAPWNVRNRVFEYSGFPW   82 (662)
T ss_dssp             EEETTEEEEEEEETTTTTEEEEEEECT---------------------------TSCEEESSCTTCCBCCCGGGTCCCCE
T ss_pred             EEcCCeEEEEecCcccCCcEEEEEECC---------------------------CCCcceeCCCCccccccccccCCccc
Confidence            578777677777  5588899998641                           222233334444444         55


Q ss_pred             EEe-eCCCcE-EEEEe-CCCcEEEEeCC--C-CceEEEEe-----cCCceeEEEEcCCCcEEEEEccC----------Ce
Q 045370           71 LTI-SGGTTF-FVSSS-LDATCKVWDLG--S-GILIQTQV-----YPQAVTAIAFHPGEQLLFAGSID----------GR  129 (350)
Q Consensus        71 ~~~-~~~~~~-l~s~~-~d~~v~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~  129 (350)
                      .|+ ++++.. |+.++ .+..|.+|++.  . +.......     +...+..++|+|||+.|+.++.+          ..
T Consensus        83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred             eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence            566 256666 55544 35667777766  3 44433333     45578899999999999988876          58


Q ss_pred             EEEEeCCccccccccccccccceeee-ccCCceEEEEecCCe--EEEEeCC--------CcEEEEECC-Cc---eEEEEe
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLK-GHNGSITALAFSASH--LISASED--------KTVCLWDVT-RR---VSIRRF  194 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~--l~s~~~d--------g~v~iwd~~-~~---~~~~~~  194 (350)
                      |++||+.......     ......+. .+...+..++|+|+|  |+.++.+        ..|++||+. ++   +.....
T Consensus       163 i~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          163 LAAVPLDGSAAAD-----RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEETTSTTTTC-----GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEECCCCcccc-----CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            9999987510000     01112333 455678889999999  7766644        379999999 57   444444


Q ss_pred             ccCCCceeEEEEEccCCeEEeeecCc
Q 045370          195 NHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       195 ~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+...+..+.|+|||+++++++.++
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTS
T ss_pred             CCCCceEcceEECCCCeEEEEECCCC
Confidence            45578899999999999776655543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=9.7e-12  Score=106.26  Aligned_cols=179  Identities=14%  Similarity=0.061  Sum_probs=121.2

Q ss_pred             CeecCCCCEEEEEeCCC------------------------cEEEEeCccccccccccccccccccccEEEeeccccccc
Q 045370            1 MVFSDDGFLLISGSDDG------------------------MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL   56 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (350)
                      |+|+|+|+++++.+.++                        .|.+||..                           .+..
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---------------------------~g~~   81 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN---------------------------NAEI   81 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT---------------------------TCCE
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC---------------------------CCeE
Confidence            57999999999888874                        56666654                           2233


Q ss_pred             eeee-ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEe----------cCCceeEEEEcC-CCcEEEE
Q 045370           57 LHYS-LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQV----------YPQAVTAIAFHP-GEQLLFA  123 (350)
Q Consensus        57 ~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~  123 (350)
                      .... ..+-..+.++++.+ ++.++++...++.|++||..... .+..+.          +-..+..++++| ++.++++
T Consensus        82 ~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           82 LQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             EEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             EeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            2222 24456788898865 67788888889999999986542 444442          123588999999 7888887


Q ss_pred             Ec-cCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCC-e--EEEEeCCCcEEEEECCCceEEEEec--cC
Q 045370          124 GS-IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS-H--LISASEDKTVCLWDVTRRVSIRRFN--HK  197 (350)
Q Consensus       124 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~  197 (350)
                      .+ .++.|++|+.. +.................++-.....++++|+ +  +++...++.|++||..+++.+..+.  .+
T Consensus       161 d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~  239 (329)
T 3fvz_A          161 DGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF  239 (329)
T ss_dssp             ECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred             eCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence            76 68999999943 22211110000000000122345889999998 5  6666678899999999899888884  35


Q ss_pred             CCceeEEEEEc
Q 045370          198 KGVVTNLVVIR  208 (350)
Q Consensus       198 ~~~v~~l~~~~  208 (350)
                      ...+.+++|+|
T Consensus       240 ~~~~~~~~~~p  250 (329)
T 3fvz_A          240 GRNVFAISYIP  250 (329)
T ss_dssp             TTCEEEEEEET
T ss_pred             CCCcceeeecC
Confidence            56788999999

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=7.2e-12  Score=105.34  Aligned_cols=174  Identities=15%  Similarity=0.092  Sum_probs=124.3

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|+|+ +++++..++.|..||..+                           .  ...+..+...+.++++.+ ++.+
T Consensus        33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------------------~--~~~~~~~~~~~~~l~~~~-dg~l   82 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVRQNRTWAWSDDG---------------------------Q--LSPEMHPSHHQNGHCLNK-QGHL   82 (296)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTS---------------------------C--EEEEESSCSSEEEEEECT-TCCE
T ss_pred             CeEeCCCCEEEEEeCCCCEEEEEECCC---------------------------C--eEEEECCCCCcceeeECC-CCcE
Confidence            47999998 788888899999999882                           2  344455667788998866 6677


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEE----Ecc-------------CCeEEEEeCCc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFA----GSI-------------DGRIFVSPLKF  137 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~  137 (350)
                      +++...++.|.+||..+++......     ....+..++++|+|+++++    |+.             .+.|..++.. 
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            7776667899999998887654432     1234678999999998887    331             3456666544 


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC-CceE---EEEeccCCCceeEEEEEccCC
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT-RRVS---IRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-~~~~---~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      +.           ...+..+......++|+|++  +++.+.++.|++||+. +++.   ...+..+.+.+.+++++++|+
T Consensus       162 g~-----------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          162 GT-----------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             SC-----------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             CC-----------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            11           11334455677899999998  7666678899999997 4544   233333455678999999999


Q ss_pred             eEEee
Q 045370          212 LLSEV  216 (350)
Q Consensus       212 ~l~~~  216 (350)
                      +.++.
T Consensus       231 l~v~~  235 (296)
T 3e5z_A          231 IWASA  235 (296)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            87755

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=4.3e-11  Score=102.29  Aligned_cols=183  Identities=13%  Similarity=0.138  Sum_probs=122.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+|+|++++++..++.|.+||..+                           .........+...+.++++.+ ++.++
T Consensus        50 ~~~~~~g~l~~~~~~~~~i~~~d~~~---------------------------~~~~~~~~~~~~~~~~i~~~~-dg~l~  101 (333)
T 2dg1_A           50 LNFDRQGQLFLLDVFEGNIFKINPET---------------------------KEIKRPFVSHKANPAAIKIHK-DGRLF  101 (333)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTT---------------------------CCEEEEEECSSSSEEEEEECT-TSCEE
T ss_pred             cEECCCCCEEEEECCCCEEEEEeCCC---------------------------CcEEEEeeCCCCCcceEEECC-CCcEE
Confidence            46889999888888899999999872                           222222224567899998865 56777


Q ss_pred             EEEeCC----CcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEcc------CCeEEEEeCCccccccccccc
Q 045370           81 VSSSLD----ATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSI------DGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        81 ~s~~~d----~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      ++...+    +.|.+||..++.....+.   ....+..++++|+|+.+++...      .+.|..+|.......      
T Consensus       102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~------  175 (333)
T 2dg1_A          102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT------  175 (333)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE------
T ss_pred             EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE------
Confidence            766665    689999998877654432   3456899999999987776653      356666665532211      


Q ss_pred             cccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCC-ceEEE--------EeccCCCceeEEEEEccCCeEEe
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTR-RVSIR--------RFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~-~~~~~--------~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                           .+..+...+..++|+|++  + ++.+.++.|++||+.+ +..+.        .+..+ ..+..++++++|.++++
T Consensus       176 -----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~  249 (333)
T 2dg1_A          176 -----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVA  249 (333)
T ss_dssp             -----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEE
T ss_pred             -----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEE
Confidence                 222233457889999997  4 4445678999999963 32221        11222 46788999999998876


Q ss_pred             eecCcccc
Q 045370          216 VSNCQRKL  223 (350)
Q Consensus       216 ~~~~~~~~  223 (350)
                      ...+..+.
T Consensus       250 ~~~~~~v~  257 (333)
T 2dg1_A          250 MYGQGRVL  257 (333)
T ss_dssp             EETTTEEE
T ss_pred             EcCCCEEE
Confidence            65544333

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=1.6e-11  Score=103.16  Aligned_cols=184  Identities=11%  Similarity=0.014  Sum_probs=125.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee---c-cccCCceEEEEeeCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS---L-EHKSSVTGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~h~~~v~~~~~~~~~   76 (350)
                      |+|+|+|+++++...++.|.+||..+                           +......   . .....+.++++.+ +
T Consensus        74 l~~~~dg~l~v~~~~~~~i~~~d~~~---------------------------g~~~~~~~~~~~~~~~~~~~i~~d~-~  125 (296)
T 3e5z_A           74 HCLNKQGHLIACSHGLRRLERQREPG---------------------------GEWESIADSFEGKKLNSPNDVCLAP-D  125 (296)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECSTT---------------------------CCEEEEECEETTEECCCCCCEEECT-T
T ss_pred             eeECCCCcEEEEecCCCeEEEEcCCC---------------------------CcEEEEeeccCCCCCCCCCCEEECC-C
Confidence            47899999888877788999999852                           1111111   1 1123466788865 6


Q ss_pred             CcEEEE----Ee-------------CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC-cc
Q 045370           77 TTFFVS----SS-------------LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK-FL  138 (350)
Q Consensus        77 ~~~l~s----~~-------------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~  138 (350)
                      +.++++    |+             ..+.|..++.. ++......+......++|+|+++.+++.+.++.|++|++. .+
T Consensus       126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g  204 (296)
T 3e5z_A          126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG  204 (296)
T ss_dssp             SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS
T ss_pred             CCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC
Confidence            777776    32             13455556655 5554445556677899999999988777788999999986 22


Q ss_pred             cc-ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE-ccCCeEEe
Q 045370          139 LL-EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSLLSE  215 (350)
Q Consensus       139 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~  215 (350)
                      .. ..        ...+..+...+.++++++++ +..+. ++.|.+||.. ++.+..+..+.. +++++|. |+++.|.+
T Consensus       205 ~~~~~--------~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          205 ETEYQ--------GVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             CEEEE--------EEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred             cCcCC--------CeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence            21 10        01112345567789999999 66666 8899999987 777888876666 8999995 88888886


Q ss_pred             eecCcccccc
Q 045370          216 VSNCQRKLKK  225 (350)
Q Consensus       216 ~~~~~~~~~~  225 (350)
                      ++.+ .++++
T Consensus       274 ~t~~-~l~~~  282 (296)
T 3e5z_A          274 TVST-EFWSI  282 (296)
T ss_dssp             EETT-EEEEE
T ss_pred             EcCC-eEEEE
Confidence            6654 44443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.43  E-value=3.1e-11  Score=104.43  Aligned_cols=106  Identities=7%  Similarity=-0.032  Sum_probs=77.7

Q ss_pred             CCCCEEEEEe------CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            5 DDGFLLISGS------DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         5 ~dg~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +++++++...      .|+.|.+||..                           .......+..+..+  .+++++ +++
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~---------------------------t~~~~~~i~~g~~p--~i~~sp-dg~   62 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYT---------------------------NGKFLGMVPTAFNG--HVQVSN-DGK   62 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETT---------------------------TCCEEEEEECCEEE--EEEECT-TSS
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECC---------------------------CCeEEEEecCCCCC--ceEECC-CCC
Confidence            4667776654      37899999987                           34444445455444  788865 677


Q ss_pred             EEEEEe----------CCCcEEEEeCCCCceEEEEec-------CCceeEEEEcCCCcEEEEEcc--CCeEEEEeCCccc
Q 045370           79 FFVSSS----------LDATCKVWDLGSGILIQTQVY-------PQAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKFLL  139 (350)
Q Consensus        79 ~l~s~~----------~d~~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~  139 (350)
                      +++++.          .++.|.+||..+++.+..+..       ......++++|+|++|+++..  ++.|.+||+.+.+
T Consensus        63 ~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~  142 (361)
T 2oiz_A           63 KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD  142 (361)
T ss_dssp             EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred             EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence            777765          367899999999988887653       245778999999999998874  5799999987654


Q ss_pred             c
Q 045370          140 L  140 (350)
Q Consensus       140 ~  140 (350)
                      .
T Consensus       143 ~  143 (361)
T 2oiz_A          143 Y  143 (361)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=1.2e-11  Score=102.69  Aligned_cols=181  Identities=10%  Similarity=0.040  Sum_probs=130.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-CCceEEEEeeCCCcEEEEE
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-SSVTGLLTISGGTTFFVSS   83 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~   83 (350)
                      ..+++|++++.|+.|.+||.+                           ++..+..+..+. ..+.++.+.+ ++++++  
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~---------------------------tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--   52 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKD---------------------------TKEIVWEYPLEKGWECNSVAATK-AGEILF--   52 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETT---------------------------TTEEEEEEECCTTCCCCEEEECT-TSCEEE--
T ss_pred             CCCcEEEeeCCCCEEEEEECC---------------------------CCeEEEEeCCCccCCCcCeEECC-CCCEEE--
Confidence            346799999999999999997                           355555555554 4678887755 677777  


Q ss_pred             eCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370           84 SLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      +.++.|..||. +++.+..+...  ..+.++.+.++|+++++.+. ++.|..+|. .++.........    ....+...
T Consensus        53 s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~----~~~~~~~~  126 (276)
T 3no2_A           53 SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET----GIERPHAQ  126 (276)
T ss_dssp             ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC----SCSSGGGS
T ss_pred             eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC----CCCccccc
Confidence            45788999999 79888887753  47889999999999999887 778888875 333222211110    00122223


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ...+.+.+++  +++...++.|..||.. |+.+.++... ..+.++.+.++|.++++++.+.++.
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~  189 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFV  189 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEE
Confidence            4455678888  7788889999999998 9999998754 4566788899999988776665443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.42  E-value=2.1e-11  Score=100.87  Aligned_cols=184  Identities=7%  Similarity=-0.014  Sum_probs=123.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|+++++.. ++.|.+||...                           .............+.++++.+ ++.++
T Consensus        72 i~~~~~g~l~v~~~-~~~i~~~d~~~---------------------------~~~~~~~~~~~~~p~~i~~~~-~g~l~  122 (270)
T 1rwi_B           72 LAVDGAGTVYVTDF-NNRVVTLAAGS---------------------------NNQTVLPFDGLNYPEGLAVDT-QGAVY  122 (270)
T ss_dssp             EEECTTCCEEEEET-TTEEEEECTTC---------------------------SCCEECCCCSCSSEEEEEECT-TCCEE
T ss_pred             eEECCCCCEEEEcC-CCEEEEEeCCC---------------------------ceEeeeecCCcCCCcceEECC-CCCEE
Confidence            46889998666665 88999998772                           111111112235678888866 66777


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++...++.|.+|+..+....... .....+..++++++++.+++...++.|.+||........          ....+..
T Consensus       123 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----------~~~~~~~  192 (270)
T 1rwi_B          123 VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV----------LPFTDIT  192 (270)
T ss_dssp             EEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE----------CCCSSCC
T ss_pred             EEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe----------ecccCCC
Confidence            77777889999987665443321 223467899999999977777778999999987432111          1112236


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .+.++++++++  +++...++.|.+||............+...+.+++++|+|+++++...++++.
T Consensus       193 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            78899999998  44445678999999976544332223335689999999998777555554443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=2.8e-11  Score=100.17  Aligned_cols=185  Identities=10%  Similarity=0.019  Sum_probs=121.3

Q ss_pred             CeecCCCCEEE-EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLI-SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+++++|++++ +.+.++.|.+||..+                           .........+...+.++++.+ ++.+
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~---------------------------~~~~~~~~~~~~~p~~i~~~~-~g~l   80 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGS---------------------------TGTTVLPFNGLYQPQGLAVDG-AGTV   80 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC--------------------------------EECCCCSCCSCCCEEECT-TCCE
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCC---------------------------cccceEeeCCcCCcceeEECC-CCCE
Confidence            46889999777 546789999998762                           111111122335677888865 5565


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++.. ++.|.+||.......... .....+..++++++|+.+++...++.|.+|+.......          .......
T Consensus        81 ~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----------~~~~~~~  149 (270)
T 1rwi_B           81 YVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----------VLPFTGL  149 (270)
T ss_dssp             EEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----------ECCCCSC
T ss_pred             EEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----------eeccccC
Confidence            55555 889999998866543221 22356889999999997777777899999975532111          0111223


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                      ..+.++++++++  +++...++.|.+||............+...+.+++++++|.++++...+..+..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  217 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence            457889999988  445556789999999877655433334467889999999977775544444443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.38  E-value=5e-12  Score=110.60  Aligned_cols=193  Identities=9%  Similarity=-0.059  Sum_probs=112.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .|||||++|+.++.++.|.+||+.++..............++..+.+...  ..... ..     ...+.|.| ++..++
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~-~~-----~~~~~~sp-dg~~~~  157 (396)
T 3c5m_A           87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVG-IE-----ILKRDWQP-LTSWEK  157 (396)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEE-EE-----EEGGGCCC-CCSHHH
T ss_pred             eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--Ccccc-cc-----ccccccCC-CCccee
Confidence            58999999999999999999998742211100000000000000000000  00000 00     00012333 444443


Q ss_pred             EE-----eCCCcEEEEeCCCCceEEEEecCCceeEEEEcC-CCcEEEEEccC------CeEEEEeCCccccccccccccc
Q 045370           82 SS-----SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSID------GRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        82 s~-----~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      .+     ..+..|.+||+.+++......+...+..+.|+| ++..|+.++.+      ..|.+||+.....         
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------  228 (396)
T 3c5m_A          158 FAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---------  228 (396)
T ss_dssp             HHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---------
T ss_pred             eeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---------
Confidence            32     356789999999988777777778899999999 78877665543      3688888763221         


Q ss_pred             cceeeecc--CCceEEEEecCCe--EEEEeCC-----CcEEEEECCCceEEEEeccCCCceeEEEEEc-cCCeEEeee
Q 045370          150 QHSVLKGH--NGSITALAFSASH--LISASED-----KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR-QSSLLSEVS  217 (350)
Q Consensus       150 ~~~~~~~~--~~~i~~~~~~~~~--l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~  217 (350)
                        ..+..+  ...+..+.|+|++  |+.++.+     +.|++||+.+++...... ..+ .. +.|+| +|++++.++
T Consensus       229 --~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          229 --RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             --EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEE
T ss_pred             --eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEec
Confidence              112222  2357889999998  6666543     449999999886543322 112 23 89999 999888654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.37  E-value=4e-12  Score=111.22  Aligned_cols=179  Identities=12%  Similarity=0.023  Sum_probs=114.1

Q ss_pred             CeecCCCCEEEEEeCC---CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSDD---GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      ++|||||++|+.....   ..|.+||+.+                           .........+......+.|+ +++
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------------------------~~~~~l~~~~~~~~~~~~~s-pdg   92 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET---------------------------QQAVQLTEGKGDNTFGGFIS-TDE   92 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------------TEEEECCCSSCBCTTTCEEC-TTS
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCC---------------------------CcEEEeecCCCCccccceEC-CCC
Confidence            4699999998877543   3678888772                           22222222222223335564 477


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecC-CceeE-------------------EEEcCCCcEEEEE-----ccCCeEEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYP-QAVTA-------------------IAFHPGEQLLFAG-----SIDGRIFV  132 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i  132 (350)
                      ..|+.++.++.|.+||+.+++........ .....                   +.|+|+++.++.+     ..+..|++
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            88988888999999999988766655422 21112                   2456666665544     34568899


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecC-Ce--EEEEeCC------CcEEEEECCCceEEEEeccC--CCce
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA-SH--LISASED------KTVCLWDVTRRVSIRRFNHK--KGVV  201 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--l~s~~~d------g~v~iwd~~~~~~~~~~~~~--~~~v  201 (350)
                      ||+..+...           .+..+...+..+.|+| ++  |+..+.+      ..|.+||+.++... .+..+  ...+
T Consensus       173 ~d~~~g~~~-----------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~  240 (396)
T 3c5m_A          173 VDIETGELE-----------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESC  240 (396)
T ss_dssp             EETTTCCEE-----------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEE
T ss_pred             EECCCCcEE-----------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccc
Confidence            998754321           2334667789999999 66  5555433      46899998766533 33223  2357


Q ss_pred             eEEEEEccCCeEEeeecC
Q 045370          202 TNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~~  219 (350)
                      ..++|+|+|+.|+.++.+
T Consensus       241 ~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             EEEEECTTSSCEEEEEEE
T ss_pred             cceEECCCCCEEEEEecC
Confidence            889999999987766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.37  E-value=2e-10  Score=98.17  Aligned_cols=188  Identities=15%  Similarity=0.122  Sum_probs=119.7

Q ss_pred             CeecCCCCEEEEEeCC----CcEEEEeCccccccccccccccccccccEEEeeccccccceeee--ccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSDD----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS--LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~   74 (350)
                      |+|+|+|+++++...+    +.|.+||..+                           ......+  ..+...+.++++.+
T Consensus        92 i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~---------------------------~~~~~~~~~~~~~~~~~~i~~d~  144 (333)
T 2dg1_A           92 IKIHKDGRLFVCYLGDFKSTGGIFAATENG---------------------------DNLQDIIEDLSTAYCIDDMVFDS  144 (333)
T ss_dssp             EEECTTSCEEEEECTTSSSCCEEEEECTTS---------------------------CSCEEEECSSSSCCCEEEEEECT
T ss_pred             EEECCCCcEEEEeCCCCCCCceEEEEeCCC---------------------------CEEEEEEccCccCCcccceEECC
Confidence            4688999988877766    6899999872                           2111111  12345688888866


Q ss_pred             CCCcEEEEEeC------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCc-ccccccccc
Q 045370           75 GGTTFFVSSSL------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKF-LLLEDHFIV  146 (350)
Q Consensus        75 ~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~  146 (350)
                       ++.++++...      .+.|..+|..+++..........+..++|+|+++.++ +.+.++.|.+||+.. +......  
T Consensus       145 -~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~--  221 (333)
T 2dg1_A          145 -KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF--  221 (333)
T ss_dssp             -TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE--
T ss_pred             -CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc--
Confidence             5666666543      3556666666655544444445678999999998665 445678999999863 1111000  


Q ss_pred             ccccceeeeccCCceEEEEecCCe-E-EEEeCCCcEEEEECCCceEEEEeccCCC------ceeEEEEEccCCeEEeeec
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH-L-ISASEDKTVCLWDVTRRVSIRRFNHKKG------VVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~-l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~  218 (350)
                      .......+.++ ..+..+++++++ + ++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.
T Consensus       222 ~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          222 GATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            00000111222 467889999998 4 44456789999998 4666666654432      6899999999877765555


Q ss_pred             Cc
Q 045370          219 CQ  220 (350)
Q Consensus       219 ~~  220 (350)
                      .+
T Consensus       300 ~g  301 (333)
T 2dg1_A          300 DI  301 (333)
T ss_dssp             CG
T ss_pred             cc
Confidence            43

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.37  E-value=3.5e-11  Score=113.68  Aligned_cols=187  Identities=12%  Similarity=0.027  Sum_probs=119.3

Q ss_pred             CeecCCCCEEEEEeCCC-----cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDG-----MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++|||||++||.++.++     .|++||+.+                           +........+ ..+.+++|+| 
T Consensus       130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---------------------------g~~~~~~~~~-~~~~~~~wsp-  180 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------------AKELPDVLER-VKFSCMAWTH-  180 (710)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------------TEEEEEEEEE-ECSCCEEECT-
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------------CCCCcccccC-cccceEEEEe-
Confidence            37999999998776543     899999983                           3322222222 2366788866 


Q ss_pred             CCcEEEEEeCCCc----------------EEEEeCCCCceE--EEEe---cCCceeEEEEcCCCcEEEEEcc-----CCe
Q 045370           76 GTTFFVSSSLDAT----------------CKVWDLGSGILI--QTQV---YPQAVTAIAFHPGEQLLFAGSI-----DGR  129 (350)
Q Consensus        76 ~~~~l~s~~~d~~----------------v~vwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~-----dg~  129 (350)
                      +++.|+.++.++.                |.+|++.++...  ..+.   +...+..+.|+|+|++|+.++.     +..
T Consensus       181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence            6677777777766                999999987632  2222   3445789999999999887765     568


Q ss_pred             EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC----CCcEEEEECCCceE--EEEeccCCC--
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE----DKTVCLWDVTRRVS--IRRFNHKKG--  199 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~----dg~v~iwd~~~~~~--~~~~~~~~~--  199 (350)
                      |++||+......   .........+..+...+.. .|+|++  |+..+.    ++.|.+||+.++..  ...+..|..  
T Consensus       261 l~~~d~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          261 LWYCDLQQESNG---ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             EEEEEGGGSSSS---SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             EEEEECcccccc---cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            999998741000   0000022344555555544 477766  444443    23699999987641  233433433  


Q ss_pred             ceeEEEEEccCCeEEeeecCc
Q 045370          200 VVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       200 ~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .+..++|++++.++++...++
T Consensus       337 ~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEETT
T ss_pred             eEEEEEEEcCCEEEEEEEECC
Confidence            688899997777777666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.35  E-value=3.9e-11  Score=103.11  Aligned_cols=170  Identities=12%  Similarity=0.033  Sum_probs=107.3

Q ss_pred             CeecCCCCEEEEEeCC---Cc--EEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDD---GM--ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d---g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++|||||++|+.++.+   +.  |.+||+.+                           +.... +..+.. +..+.|+| 
T Consensus        64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~---------------------------g~~~~-l~~~~~-~~~~~wsp-  113 (347)
T 2gop_A           64 PRISPDGKKIAFMRANEEKKVSEIWVADLET---------------------------LSSKK-ILEAKN-IRSLEWNE-  113 (347)
T ss_dssp             EEECTTSSEEEEEEEETTTTEEEEEEEETTT---------------------------TEEEE-EEEESE-EEEEEECT-
T ss_pred             eEECCCCCEEEEEEeccCCCcceEEEEECCC---------------------------CceEE-EEcCCC-ccceeECC-
Confidence            3799999999987754   33  66777762                           22222 222233 88888866 


Q ss_pred             CCcEEEEEeC---------------------------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC
Q 045370           76 GTTFFVSSSL---------------------------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG  128 (350)
Q Consensus        76 ~~~~l~s~~~---------------------------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  128 (350)
                      +++.|+.++.                           ...|.+||+.+++.+..+... .+..+.|+|+| .++++..++
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~  191 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHRE  191 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCC
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEeccc
Confidence            6666666653                           257999999988873443334 88999999999 777775542


Q ss_pred             -------eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCC--------CcEEEEECCCceEE
Q 045370          129 -------RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASED--------KTVCLWDVTRRVSI  191 (350)
Q Consensus       129 -------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~d--------g~v~iwd~~~~~~~  191 (350)
                             ...+|.+..+..           ..+..+ ..+..+  +|++  |+.++.+        ..|++||  +++..
T Consensus       192 ~~~~~~~~~~l~~~d~~~~-----------~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          192 IIPQYFKFWDIYIWEDGKE-----------EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             SSCCSSCCEEEEEEETTEE-----------EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             ccccccccccEEEeCCCce-----------EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence                   334444332211           122233 444444  8888  6666543        4688888  66655


Q ss_pred             EEeccCCCceeE-EEEEccCCeEEeeecCc
Q 045370          192 RRFNHKKGVVTN-LVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       192 ~~~~~~~~~v~~-l~~~~~~~~l~~~~~~~  220 (350)
                      .....+...+.. +.|+ ++ ++++++.++
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            445556778886 8999 88 777666554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.34  E-value=2e-10  Score=104.71  Aligned_cols=185  Identities=10%  Similarity=0.021  Sum_probs=129.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEe
Q 045370            5 DDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS   84 (350)
Q Consensus         5 ~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   84 (350)
                      |.+.++++...++.|.++|..                           +...+..+. ....+..+.+++ +++++++++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~---------------------------t~~v~~~i~-~g~~p~~v~~Sp-DGr~lyv~~  215 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGS---------------------------TYEIKTVLD-TGYAVHISRLSA-SGRYLFVIG  215 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETT---------------------------TCCEEEEEE-CSSCEEEEEECT-TSCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECC---------------------------CCeEEEEEe-CCCCccceEECC-CCCEEEEEc
Confidence            445577788889999999998                           344444443 233556787755 778888899


Q ss_pred             CCCcEEEEeCC--CCceEEEEecCCceeEEEEc----CCCcEEEEEcc-CCeEEEEeCCccccccccccccccceeeecc
Q 045370           85 LDATCKVWDLG--SGILIQTQVYPQAVTAIAFH----PGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        85 ~d~~v~vwd~~--~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      .|+.|.+||+.  +++.+..+........++|+    |+|+++++++. ++.|.++|..+.+.................|
T Consensus       216 ~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~  295 (567)
T 1qks_A          216 RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH  295 (567)
T ss_dssp             TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred             CCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc
Confidence            99999999996  78888888777778899999    69998888765 5999999988655443221111000001112


Q ss_pred             CC-ceEEEEecCCe---EEEEeCCCcEEEEECCCceE--EEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          158 NG-SITALAFSASH---LISASEDKTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       158 ~~-~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .. .+..+..++++   +++...+|.|.++|..+...  +..+. .......+.|+|+++++++++..
T Consensus       296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~  362 (567)
T 1qks_A          296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANA  362 (567)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGG
T ss_pred             CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCC
Confidence            22 67788888876   56666789999999987543  23333 33456788999999998877654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.33  E-value=1.1e-10  Score=99.53  Aligned_cols=176  Identities=10%  Similarity=0.041  Sum_probs=118.6

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecccc-----CCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK-----SSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~   75 (350)
                      |+|+++|+++++...++.|.+||..+                           ......+....     .....+++ . 
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t---------------------------~~~~~~i~~g~~~~~~~~p~~i~~-~-  139 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKT---------------------------YEITGYIECPDMDMESGSTEQMVQ-Y-  139 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTT---------------------------TEEEEEEECTTCCTTTCBCCCEEE-E-
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCC---------------------------CeEEEEEEcCCccccCCCcceEEE-E-
Confidence            46788885555554899999999883                           22222222111     24556666 3 


Q ss_pred             CCcEEEEEe-CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC----------CeEEEEeCCcccccccc
Q 045370           76 GTTFFVSSS-LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID----------GRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        76 ~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~  144 (350)
                      ++.++++.. .++.|.++|+.+++....+........+.++|+|++++++..+          +.|.++|..++....  
T Consensus       140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--  217 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--  217 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--
T ss_pred             CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--
Confidence            455555544 4899999999999988888766677899999999977776654          789999988654322  


Q ss_pred             ccccccceeeecc-CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEE--eccCCCceeEEEEEccCCeEEeee
Q 045370          145 IVGEDQHSVLKGH-NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRR--FNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       145 ~~~~~~~~~~~~~-~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                              .+... ......++++|++  ++++..  .|.+||..+++....  +.........++++|++..|.++.
T Consensus       218 --------~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          218 --------QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             --------EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             --------EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence                    22211 2367899999977  555544  899999998876422  121235688999999554444444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.32  E-value=1.3e-10  Score=99.81  Aligned_cols=134  Identities=7%  Similarity=0.001  Sum_probs=88.8

Q ss_pred             CceEEEEeeCCCcEEEEEeCCC-------cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC--------CeE
Q 045370           66 SVTGLLTISGGTTFFVSSSLDA-------TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID--------GRI  130 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i  130 (350)
                      .+..+.|++ ++ +++++..++       ...+|.+.+++......+ ..+..+  +|+|++|+.++.+        ..|
T Consensus       172 ~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          172 RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred             CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence            788888876 56 777776542       345555445555444444 444443  9999988777643        468


Q ss_pred             EEEeCCccccccccccccccceeeeccCCceEE-EEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA-LAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      ++||  .+..          ......+...+.. +.|+ ++ +++++.++.++|| +.+++....+. +.+.|.+++|+|
T Consensus       247 ~~~d--~~~~----------~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~v~~~~~s~  311 (347)
T 2gop_A          247 YIYD--GKEV----------MGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIAK-GRHWIMGFDVDE  311 (347)
T ss_dssp             EEEC--SSCE----------EESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEEC-SSSEEEEEEESS
T ss_pred             EEEC--CCce----------EeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEec-CCCeEEeeeeeC
Confidence            8887  2211          1123345667876 8999 88 8888899999999 87666544443 577899999999


Q ss_pred             cCCeEEeeecCcc
Q 045370          209 QSSLLSEVSNCQR  221 (350)
Q Consensus       209 ~~~~l~~~~~~~~  221 (350)
                        .++++++.+..
T Consensus       312 --~~~~~~~~~~~  322 (347)
T 2gop_A          312 --IVVYLKETATR  322 (347)
T ss_dssp             --SEEEEEECSSS
T ss_pred             --cEEEEEcCCCC
Confidence              66666666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=2.3e-10  Score=108.08  Aligned_cols=183  Identities=11%  Similarity=0.007  Sum_probs=121.6

Q ss_pred             CeecCCCCEEEEEeCCCc----------------EEEEeCccccccccccccccccccccEEEeeccccccceeeecccc
Q 045370            1 MVFSDDGFLLISGSDDGM----------------ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHK   64 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~   64 (350)
                      ++|||||+.|+.++.++.                |++|++.+...                       ....+.....|.
T Consensus       176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-----------------------~~~~v~~~~~~~  232 (710)
T 2xdw_A          176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-----------------------EDILCAEFPDEP  232 (710)
T ss_dssp             EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-----------------------GCEEEECCTTCT
T ss_pred             EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-----------------------cceEEeccCCCC
Confidence            479999999999988776                88898873110                       001122223345


Q ss_pred             CCceEEEEeeCCCcEEEEEeC-----CCcEEEEeCCC------C--ceEEEEecCCceeEEEEcCCCcEEEEEccC----
Q 045370           65 SSVTGLLTISGGTTFFVSSSL-----DATCKVWDLGS------G--ILIQTQVYPQAVTAIAFHPGEQLLFAGSID----  127 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~-----d~~v~vwd~~~------~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  127 (350)
                      ..+..+.|++ ++.+|+.++.     +..|.+||+.+      +  .......+...+.. .|+|+|..|+..+..    
T Consensus       233 ~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          233 KWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPN  310 (710)
T ss_dssp             TCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTT
T ss_pred             eEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCC
Confidence            5677888865 6666766654     56899999986      4  23333444444544 588888877766543    


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCC--ceEEEEecCCe--EEEEeCCC--cEEEEECCCceEEEEeccCCCce
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG--SITALAFSASH--LISASEDK--TVCLWDVTRRVSIRRFNHKKGVV  201 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~--l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v  201 (350)
                      +.|.+||+..+...        ....+..|..  .+..+.|++++  +++...|+  .|++||+.+++.+..+..+.+.+
T Consensus       311 ~~l~~~d~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v  382 (710)
T 2xdw_A          311 YRLINIDFTDPEES--------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSV  382 (710)
T ss_dssp             CEEEEEETTSCCGG--------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEE
T ss_pred             CEEEEEeCCCCCcc--------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceE
Confidence            46999998754211        1123334433  68889998655  77777787  46677887788778887777888


Q ss_pred             eEEEEEccCCeEEee
Q 045370          202 TNLVVIRQSSLLSEV  216 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~  216 (350)
                      ..++++|++..++..
T Consensus       383 ~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          383 VGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EEEECCTTCSEEEEE
T ss_pred             EEEecCCCCCEEEEE
Confidence            999999998755533

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=8.3e-10  Score=92.76  Aligned_cols=149  Identities=7%  Similarity=0.000  Sum_probs=99.0

Q ss_pred             CCceEEEEeeCCCcEEEEEeCC---------CcEEEEeCCC-CceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEE
Q 045370           65 SSVTGLLTISGGTTFFVSSSLD---------ATCKVWDLGS-GILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVS  133 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d---------~~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~  133 (350)
                      ..+.++++.+ ++.++++...+         ..-.+|.+.. ++.............++|+|+++.++ +.+.++.|..|
T Consensus        98 ~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~  176 (297)
T 3g4e_A           98 NRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF  176 (297)
T ss_dssp             EEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             CCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence            3467788765 56665544322         2345555543 44444444445678999999998665 45567899999


Q ss_pred             eCC--ccccccccccccccceeeeccCCceEEEEecCCe-EEEE-eCCCcEEEEECCCceEEEEeccCCCceeEEEEE-c
Q 045370          134 PLK--FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISA-SEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-R  208 (350)
Q Consensus       134 d~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~  208 (350)
                      ++.  .+....     ......+..+...+..+++++++ |.++ ..++.|..||..+++.+..+..+...+++++|. |
T Consensus       177 ~~d~~~G~~~~-----~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~  251 (297)
T 3g4e_A          177 DYDLQTGQISN-----RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK  251 (297)
T ss_dssp             EECTTTCCEEE-----EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred             eccCCCCcccC-----cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence            873  332211     11112233344678899999998 4444 456789999999999999888776789999999 8


Q ss_pred             cCCeEEeeecC
Q 045370          209 QSSLLSEVSNC  219 (350)
Q Consensus       209 ~~~~l~~~~~~  219 (350)
                      +++.|+.++..
T Consensus       252 d~~~L~vt~~~  262 (297)
T 3g4e_A          252 NYSEMYVTCAR  262 (297)
T ss_dssp             GGCEEEEEEBC
T ss_pred             CCCEEEEEcCC
Confidence            98877766654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.27  E-value=7.7e-10  Score=94.37  Aligned_cols=170  Identities=11%  Similarity=0.040  Sum_probs=119.3

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      ++++++...++.|.+||..                           +...+..+. .......+++++ ++.++++...+
T Consensus        54 ~~lyv~~~~~~~v~viD~~---------------------------t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~  104 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDIN---------------------------TFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWD  104 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETT---------------------------TCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSC
T ss_pred             CEEEEEEcCCCEEEEEECc---------------------------ccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCC
Confidence            4455566667999999988                           344444442 346678888866 45655555589


Q ss_pred             CcEEEEeCCCCceEEEEecCC------ceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           87 ATCKVWDLGSGILIQTQVYPQ------AVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +.|.+||..+++....+....      ....+++  ++..+++++  .++.|.++|..++....          .+.. .
T Consensus       105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~----------~i~~-g  171 (328)
T 3dsm_A          105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD----------ELTI-G  171 (328)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE----------EEEC-S
T ss_pred             CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE----------EEEc-C
Confidence            999999999999887776555      6677888  344555544  48899999998655432          2221 2


Q ss_pred             CceEEEEecCCe-EEEEe-CC----------CcEEEEECCCceEEEEeccC-CCceeEEEEEccCCeEEeeec
Q 045370          159 GSITALAFSASH-LISAS-ED----------KTVCLWDVTRRVSIRRFNHK-KGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~-~d----------g~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .....+.++|++ ++.++ .+          +.|.++|..+++....+... ......++|+|+++.|+++..
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            234678899988 44443 33          78999999999988777632 236899999999998887665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=1.6e-10  Score=108.97  Aligned_cols=177  Identities=11%  Similarity=0.067  Sum_probs=113.3

Q ss_pred             CeecCCCCEEE-----EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC--ceEEEEe
Q 045370            1 MVFSDDGFLLI-----SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS--VTGLLTI   73 (350)
Q Consensus         1 i~~s~dg~~l~-----sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~   73 (350)
                      ++|||||++||     +|+.+..|++||+.+                           +....  ..+...  ...++|+
T Consensus       126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t---------------------------g~~~~--~~~~~~~~~~~~~ws  176 (695)
T 2bkl_A          126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDS---------------------------GEWSK--VDVIEGGKYATPKWT  176 (695)
T ss_dssp             EEECTTSSEEEEEEEETTCSCCEEEEEETTT---------------------------CCBCS--SCCBSCCTTCCCEEC
T ss_pred             EEECCCCCEEEEEECCCCCceEEEEEEECCC---------------------------CCCcC--CcccCcccccceEEe
Confidence            37999999998     444567899999983                           22210  011111  2567886


Q ss_pred             eCCCcEEEEEeCCCc-------------EEEEeCCCCce--EEEEe---cCCceeEEEEcCCCcEEEEEccCC----eEE
Q 045370           74 SGGTTFFVSSSLDAT-------------CKVWDLGSGIL--IQTQV---YPQAVTAIAFHPGEQLLFAGSIDG----RIF  131 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~-------------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg----~i~  131 (350)
                      + +++.|+.++.|..             |++|++.++..  ...+.   +...+..+.|+|+|++|+.++.++    .|+
T Consensus       177 p-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          177 P-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             T-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred             c-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence            5 6777888888776             99999998763  22222   345788999999999988877665    667


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCeE-EEEe---CCCcEEEEECCCceE---EEEeccC-CCceeE
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHL-ISAS---EDKTVCLWDVTRRVS---IRRFNHK-KGVVTN  203 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l-~s~~---~dg~v~iwd~~~~~~---~~~~~~~-~~~v~~  203 (350)
                      +|+...+           ....+..+...+....++++.+ +.+.   .++.|.+||+.++..   ...+..+ ...+..
T Consensus       256 ~~~~~~~-----------~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          256 WKRPGEK-----------DFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             EECTTCS-----------SCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             EEcCCCC-----------ceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence            7654322           1224445555666666644443 3333   258899999987642   2223323 446788


Q ss_pred             EEEEccCCeEEeeecC
Q 045370          204 LVVIRQSSLLSEVSNC  219 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~  219 (350)
                      ++|+ ++.++++...+
T Consensus       325 ~~~~-~~~lv~~~~~d  339 (695)
T 2bkl_A          325 VSIV-GGHLSLEYLKD  339 (695)
T ss_dssp             EEEE-TTEEEEEEEET
T ss_pred             EEEE-CCEEEEEEEEC
Confidence            8888 56666655544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.25  E-value=1.7e-09  Score=91.33  Aligned_cols=152  Identities=11%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             CCceEEEEeeCCCcEEEEEeCC---------------CcEEEEeCCCCceEEEEecCCceeEEEEc----CCCcEEEEE-
Q 045370           65 SSVTGLLTISGGTTFFVSSSLD---------------ATCKVWDLGSGILIQTQVYPQAVTAIAFH----PGEQLLFAG-  124 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d---------------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-  124 (350)
                      ..+.++++.+ ++.++++...+               +.|..||.. ++.............++|+    |+++.++++ 
T Consensus       117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence            4578888866 56666666554               567777766 6555444444567889999    999766555 


Q ss_pred             ccCCeEEEEeCC-ccccccccccccccceeeeccC-CceEEEEecCCe-E-EEEeCCCcEEEEECCCceEEEEeccCCCc
Q 045370          125 SIDGRIFVSPLK-FLLLEDHFIVGEDQHSVLKGHN-GSITALAFSASH-L-ISASEDKTVCLWDVTRRVSIRRFNHKKGV  200 (350)
Q Consensus       125 ~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  200 (350)
                      ..++.|.+||.. .+....     ......+..+. ..+..+++++++ + ++...++.|.+||..+++.+..+..+...
T Consensus       195 ~~~~~i~~~~~~~~g~~~~-----~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~  269 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIEN-----KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK  269 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEE-----EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC
T ss_pred             CCCCeEEEEECCCCCcccc-----ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC
Confidence            567899999976 222110     01111233343 567889999998 4 44456889999999877777767666678


Q ss_pred             eeEEEEEccCCeEEeeecC-cccc
Q 045370          201 VTNLVVIRQSSLLSEVSNC-QRKL  223 (350)
Q Consensus       201 v~~l~~~~~~~~l~~~~~~-~~~~  223 (350)
                      +.+++|+|+++.|..++.. +.++
T Consensus       270 ~~~i~~~~dg~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          270 PSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ceeEEECCCCCEEEEEeCCCCeEE
Confidence            9999999999955545443 3443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.25  E-value=7.3e-10  Score=91.97  Aligned_cols=172  Identities=12%  Similarity=0.054  Sum_probs=120.6

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccc-cCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEH-KSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l   80 (350)
                      +++|+|++|+  +.++.|..||..                            +..+..+..+ ...+.++.+.+ ++.++
T Consensus        43 ~~~pdG~ilv--s~~~~V~~~d~~----------------------------G~~~W~~~~~~~~~~~~~~~~~-dG~~l   91 (276)
T 3no2_A           43 AATKAGEILF--SYSKGAKMITRD----------------------------GRELWNIAAPAGCEMQTARILP-DGNAL   91 (276)
T ss_dssp             EECTTSCEEE--ECBSEEEEECTT----------------------------SCEEEEEECCTTCEEEEEEECT-TSCEE
T ss_pred             EECCCCCEEE--eCCCCEEEECCC----------------------------CCEEEEEcCCCCccccccEECC-CCCEE
Confidence            5678888777  346678888764                            3333333333 24566777655 77888


Q ss_pred             EEEeC-CCcEEEEeCCCCceEEEEecC-------CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           81 VSSSL-DATCKVWDLGSGILIQTQVYP-------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        81 ~s~~~-d~~v~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++.+. ++.|..+|. +|+.+..+...       .....+++.++|+++++...++.|..||.. ++...          
T Consensus        92 v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w----------  159 (276)
T 3no2_A           92 VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN----------  159 (276)
T ss_dssp             EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE----------
T ss_pred             EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE----------
Confidence            88776 777888886 67777665421       235567789999999999999999999987 55432          


Q ss_pred             eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC------CceeEEEEEccCCeEEeee
Q 045370          153 VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK------GVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~~~~  217 (350)
                      .+... ..+.++...+++  +++++.++.|..+|..+++.+.++..+.      ..+.+++..++|.++++.+
T Consensus       160 ~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          160 SVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            22222 344566777877  6667777789999999999999986322      2378888999999988664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=7.8e-11  Score=101.59  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=94.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|  |+++|+++ .++.|++||+.+                           .........|...+.++.+.+++   +
T Consensus        93 l~f--d~~~L~v~-~~~~l~v~dv~s---------------------------l~~~~~~~~~~~~v~~i~~~~p~---~  139 (388)
T 1xip_A           93 VCF--HGDQVLVS-TRNALYSLDLEE---------------------------LSEFRTVTSFEKPVFQLKNVNNT---L  139 (388)
T ss_dssp             EEE--ETTEEEEE-ESSEEEEEESSS---------------------------TTCEEEEEECSSCEEEEEECSSE---E
T ss_pred             EEE--CCCEEEEE-cCCcEEEEEchh---------------------------hhccCccceeecceeeEEecCCC---E
Confidence            467  88999999 889999999983                           22223345566778888776543   8


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee---cc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK---GH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~  157 (350)
                      ++++.||.|.+||+.++....   +...|+|++|+|+|  ++.|..||.+++|+...........+...  ..+.   +|
T Consensus       140 av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P--p~~~~~~~~  212 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP--SELEELPVE  212 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC--HHHHTSCTT
T ss_pred             EEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCC--cccccccCC
Confidence            889999999999999887653   44689999999999  67888999999998775442100000000  0112   47


Q ss_pred             CCceEEEEecCCe
Q 045370          158 NGSITALAFSASH  170 (350)
Q Consensus       158 ~~~i~~~~~~~~~  170 (350)
                      ...|.++.|.+++
T Consensus       213 ~~~V~sI~wl~~~  225 (388)
T 1xip_A          213 EYSPLSVTILSPQ  225 (388)
T ss_dssp             TSEEEEEEESSSS
T ss_pred             CeeEEEEEEecCC
Confidence            7899999999988

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.22  E-value=1.5e-09  Score=91.66  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=117.5

Q ss_pred             CeecCCCCEEEE-------EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee----ccccCCceE
Q 045370            1 MVFSDDGFLLIS-------GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS----LEHKSSVTG   69 (350)
Q Consensus         1 i~~s~dg~~l~s-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~   69 (350)
                      ++|+++|+++++       +..++.|.+||..+                           .......    .++...+.+
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---------------------------g~~~~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---------------------------GKKTVICKPEVNGYGGIPAG   75 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTT---------------------------CCEEEEECCEETTEECCEEE
T ss_pred             ceECCCCCEEEEEeccccCCCCCCEEEEEeCCC---------------------------CcEEEEEecccCCCCCCCce
Confidence            478899988887       57789999999762                           1111111    124567888


Q ss_pred             EEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-Eec-----CCceeEEEEcCCCcEEEEEccC---------------C
Q 045370           70 LLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVY-----PQAVTAIAFHPGEQLLFAGSID---------------G  128 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~d---------------g  128 (350)
                      +++.+.++.++++. ..+.|.+||.. ++.... ...     ...+.+++++++|+++++...+               +
T Consensus        76 i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence            88866325555444 44579999998 765443 221     1347899999999887777655               5


Q ss_pred             eEEEEeCCccccccccccccccceeeeccCCceEEEEec----CCe--EEEE-eCCCcEEEEECC-Cce-----EEEEec
Q 045370          129 RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS----ASH--LISA-SEDKTVCLWDVT-RRV-----SIRRFN  195 (350)
Q Consensus       129 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~--l~s~-~~dg~v~iwd~~-~~~-----~~~~~~  195 (350)
                      .|..||.. +...           .+..+......++++    |++  ++.+ ..++.|.+||+. +++     ....+.
T Consensus       154 ~l~~~~~~-g~~~-----------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          154 SIYCFTTD-GQMI-----------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             EEEEECTT-SCEE-----------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             eEEEECCC-CCEE-----------EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence            67777654 2111           122233456889999    987  4444 567899999986 444     233334


Q ss_pred             cCC-CceeEEEEEccCCeEEeeecCcccc
Q 045370          196 HKK-GVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       196 ~~~-~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .+. ..+..++++++|.++++...+..+.
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            343 5678899999999888665554443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.22  E-value=4.1e-09  Score=88.22  Aligned_cols=182  Identities=11%  Similarity=0.009  Sum_probs=122.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|+++++...++.|.+||...                           .........+...+.++++.+ ++.++
T Consensus        20 i~~d~~g~l~v~~~~~~~v~~~d~~~---------------------------~~~~~~~~~~~~~~~~i~~~~-~g~l~   71 (299)
T 2z2n_A           20 ITVSDKGKVWITQHKANMISCINLDG---------------------------KITEYPLPTPDAKVMCLTISS-DGEVW   71 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC---------------------------CEEEEECSSTTCCEEEEEECT-TSCEE
T ss_pred             eEECCCCCEEEEecCCCcEEEEcCCC---------------------------CeEEecCCcccCceeeEEECC-CCCEE
Confidence            46789998887776688999998761                           100111122346788888765 66777


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++...++.|..||.. +.. ..+.   ....+..+++++++..+++...++.|..||. .+....         .....+
T Consensus        72 v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~---------~~~~~~  139 (299)
T 2z2n_A           72 FTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE---------YELPNK  139 (299)
T ss_dssp             EEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---------EECSST
T ss_pred             EeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE---------ecCCCC
Confidence            776668889999986 443 2222   3456899999999988888777889999997 332211         011223


Q ss_pred             CCceEEEEecCCe-EEEE-eCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          158 NGSITALAFSASH-LISA-SEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       158 ~~~i~~~~~~~~~-l~s~-~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ...+..+++.+++ +..+ ..++.|..||. +++.... +......+.+++++++|.+.++......+.
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            4578999999998 5444 45689999999 6665432 333445688999999999777554444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.22  E-value=3.4e-09  Score=93.14  Aligned_cols=192  Identities=4%  Similarity=-0.088  Sum_probs=115.9

Q ss_pred             CeecCCCCEEEEEeCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeee----ccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS----LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~   74 (350)
                      ++|+|++++|+++..++  .|.+|+...                           ......+    ......+.++++.+
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~---------------------------~~~~~~~g~~~~~~~~~p~~iav~p  228 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKAS---------------------------GWAPTRIGQLGSTFSGKIGAVALDE  228 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGG---------------------------TTCEEEEEECCTTSCSCCCBCEECT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCC---------------------------CceeEEeeeccchhcCCcEEEEEeC
Confidence            46788888777777655  566666552                           1111111    11446677888876


Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCceEEE----Ee-cCCce-e-EEEEcCC-CcEEEEEccCCeEEEEeCCcccccccccc
Q 045370           75 GGTTFFVSSSLDATCKVWDLGSGILIQT----QV-YPQAV-T-AIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        75 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~----~~-~~~~v-~-~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .++.+++ +..++.|..||..++.....    .. ....- . .++|+|+ +.++++-..++.|+.|+..... .. ...
T Consensus       229 ~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~-~~g  305 (409)
T 3hrp_A          229 TEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EW-FCG  305 (409)
T ss_dssp             TSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EE-EEE
T ss_pred             CCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EE-EEe
Confidence            5565544 66788999999987764332    11 11111 3 9999995 5566666677899999876321 00 000


Q ss_pred             cc-c----cceeeeccCCceEEEEecCCe--EEEEe-CCCcEEEEECCCceEEEEeccC---------------CCceeE
Q 045370          147 GE-D----QHSVLKGHNGSITALAFSASH--LISAS-EDKTVCLWDVTRRVSIRRFNHK---------------KGVVTN  203 (350)
Q Consensus       147 ~~-~----~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg~v~iwd~~~~~~~~~~~~~---------------~~~v~~  203 (350)
                      .. .    .-......-.....++++|++  +++-+ .++.|+.||+.++... .+.++               ......
T Consensus       306 ~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~g  384 (409)
T 3hrp_A          306 SATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYD  384 (409)
T ss_dssp             CTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred             CCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceE
Confidence            00 0    000000112457899999999  55555 6889999998877743 33332               235789


Q ss_pred             EEEEccCCeEEeeecCcccc
Q 045370          204 LVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ++++|++.++++-....++.
T Consensus       385 iavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          385 ICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             EEECSSSEEEEEESTTCEEE
T ss_pred             EEEcCCCCEEEEECCCCeEE
Confidence            99999987777555554443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.22  E-value=8.6e-10  Score=103.90  Aligned_cols=183  Identities=10%  Similarity=-0.029  Sum_probs=120.2

Q ss_pred             CeecCCCCEEEEEeCCCc-------------EEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCc
Q 045370            1 MVFSDDGFLLISGSDDGM-------------ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSV   67 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v   67 (350)
                      ++|+|||+.|+.++.|..             |++|++.+...                       ...++.....|...+
T Consensus       173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----------------------~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----------------------KDTVVHERTGDPTTF  229 (695)
T ss_dssp             CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-----------------------GCEEEECCCCCTTCE
T ss_pred             eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-----------------------hceEEEecCCCCEEE
Confidence            579999999999998876             99999873110                       011222334455678


Q ss_pred             eEEEEeeCCCcEEEEEeCCC----cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc---cCCeEEEEeCCcccc
Q 045370           68 TGLLTISGGTTFFVSSSLDA----TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS---IDGRIFVSPLKFLLL  140 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~  140 (350)
                      .++.|++ ++++++.++.++    .|.+|+..++.......+...+....+ ++|.+++...   .++.|.+||+.++..
T Consensus       230 ~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~  307 (695)
T 2bkl_A          230 LQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR  307 (695)
T ss_dssp             EEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred             EEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence            8888866 666666666555    677777766666555566666666666 5666444443   258999999875432


Q ss_pred             ccccccccccceeeec-c-CCceEEEEecCCe-EEEEeCCCcEEEEECC-CceEEEEeccC-CCceeEEEEEccCCeEEe
Q 045370          141 EDHFIVGEDQHSVLKG-H-NGSITALAFSASH-LISASEDKTVCLWDVT-RRVSIRRFNHK-KGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~-~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~  215 (350)
                      ..        ...+.. + ...+..++++.+. +++...|+..+||.+. ++..+..+..+ .+.+..++++|+++.++.
T Consensus       308 ~~--------~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          308 AS--------WKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             GG--------CEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred             cC--------CeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence            10        112222 2 4567888888555 8888889988887654 35566666544 667888899999876663


Q ss_pred             e
Q 045370          216 V  216 (350)
Q Consensus       216 ~  216 (350)
                      .
T Consensus       380 ~  380 (695)
T 2bkl_A          380 V  380 (695)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.21  E-value=6.4e-09  Score=87.01  Aligned_cols=185  Identities=7%  Similarity=-0.072  Sum_probs=123.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|.++++...++.|..||...                           .............+.++++.+ ++.++
T Consensus        62 i~~~~~g~l~v~~~~~~~i~~~~~~g---------------------------~~~~~~~~~~~~~~~~i~~~~-~g~l~  113 (299)
T 2z2n_A           62 LTISSDGEVWFTENAANKIGRITKKG---------------------------IIKEYTLPNPDSAPYGITEGP-NGDIW  113 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTS---------------------------CEEEEECSSTTCCEEEEEECT-TSCEE
T ss_pred             EEECCCCCEEEeCCCCCeEEEECCCC---------------------------cEEEEeCCCcCCCceeeEECC-CCCEE
Confidence            45778888777776678888888651                           100011112345678888865 66777


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-e-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-V-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++...++.|.+||. ++...... . ....+..++++++++.+++...++.|..||. .+....         .....+.
T Consensus       114 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---------~~~~~~~  182 (299)
T 2z2n_A          114 FTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---------FKIPTPA  182 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---------EECSSTT
T ss_pred             EEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---------eeCCCCC
Confidence            77767889999998 56544332 1 3456899999999988887777889999998 433221         0122334


Q ss_pred             CceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          159 GSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ..+.++++++++ +..+. .++.|.+||. +++.... ...+...+.+++++++|.+.++...+..+..+
T Consensus       183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence            568899999988 55444 5789999999 6664332 23345678999999999977755444444433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=9.8e-09  Score=87.42  Aligned_cols=146  Identities=14%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             CCceEEEEeeCCCcEEEEEeC------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCC-
Q 045370           65 SSVTGLLTISGGTTFFVSSSL------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLK-  136 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~-  136 (350)
                      ..+.++++.+ ++.++++...      .+.|..++  +++.............++|+|+++.++.+ +.++.|.+||+. 
T Consensus       134 ~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          134 NRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            3577888866 5665554432      23455555  55544433444457799999999876554 557899999985 


Q ss_pred             -cc-ccccccccccccceeeeccCCceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEEeccCCCceeEEEEE-ccCC
Q 045370          137 -FL-LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSS  211 (350)
Q Consensus       137 -~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~  211 (350)
                       ++ ....     ......+......+..+++.+++ +..+. .++.|..||. +++.+..+..+...+++++|+ |++.
T Consensus       211 ~~Gl~~~~-----~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          211 RTGLPTGK-----AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             TTCCBSSC-----CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             ccCCcccC-----ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence             33 2111     01111222334567889999998 55444 5678999998 577777777666679999999 8888


Q ss_pred             eEEeeecC
Q 045370          212 LLSEVSNC  219 (350)
Q Consensus       212 ~l~~~~~~  219 (350)
                      .|+.++..
T Consensus       285 ~L~vt~~~  292 (326)
T 2ghs_A          285 RLLVTSAR  292 (326)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEecC
Confidence            77655544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=1.3e-08  Score=92.88  Aligned_cols=179  Identities=11%  Similarity=-0.006  Sum_probs=118.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEee---CCC
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTIS---GGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~   77 (350)
                      +.|||||+++++++.|+.|.+||+...                         ....+..+... .....+++++   +++
T Consensus       202 v~~SpDGr~lyv~~~dg~V~viD~~~~-------------------------t~~~v~~i~~G-~~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          202 SRLSASGRYLFVIGRDGKVNMIDLWMK-------------------------EPTTVAEIKIG-SEARSIETSKMEGWED  255 (567)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSS-------------------------SCCEEEEEECC-SEEEEEEECCSTTCTT
T ss_pred             eEECCCCCEEEEEcCCCeEEEEECCCC-------------------------CCcEeEEEecC-CCCceeEEccccCCCC
Confidence            479999999999999999999998400                         12333333332 2356888874   466


Q ss_pred             cEEEE-EeCCCcEEEEeCCCCceEEEEecC-----------C-ceeEEEEcCCCcE-EEEEccCCeEEEEeCCccccccc
Q 045370           78 TFFVS-SSLDATCKVWDLGSGILIQTQVYP-----------Q-AVTAIAFHPGEQL-LFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        78 ~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~-----------~-~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      +++++ ...+++|.++|..+.+.+..+...           . .+..+..++++.. ++....+|.|.++|........ 
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-  334 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-  334 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-
Confidence            65555 455699999999999988875421           2 5678888887654 4455567999999987432110 


Q ss_pred             cccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEecc-CCC--ceeEEE-EEccCCeEE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNH-KKG--VVTNLV-VIRQSSLLS  214 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~--~v~~l~-~~~~~~~l~  214 (350)
                             +..+ .......++.|+|++   +++...++.|.++|+.+++.+..+.. ...  +-.... ++|++..+.
T Consensus       335 -------v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~  404 (567)
T 1qks_A          335 -------TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  404 (567)
T ss_dssp             -------EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             -------eeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence                   1111 233456788999998   44555678999999999998877653 111  112333 578754443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=2.1e-09  Score=92.26  Aligned_cols=191  Identities=10%  Similarity=0.090  Sum_probs=118.6

Q ss_pred             CeecCCCCEEEEEeC-----CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec------cccCCceE
Q 045370            1 MVFSDDGFLLISGSD-----DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL------EHKSSVTG   69 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~   69 (350)
                      |+|+++|+++++-..     ++.|.+||+.+                           ......+.      .+...+..
T Consensus        72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t---------------------------g~~~~~~~~~~~~~~~~~~~~~  124 (343)
T 2qe8_A           72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN---------------------------NQLSRVIYLPPPITLSNSFVND  124 (343)
T ss_dssp             EEECSSSEEEEEECHHHHTSCCEEEEEETTT---------------------------TEEEEEEECCTTTSCTTCCCCE
T ss_pred             EEEcCCCcEEEEcCCCCcCCCCeEEEEECCC---------------------------CeEEEEEECChhhcccccccce
Confidence            468888876665543     57899999873                           22222111      22345688


Q ss_pred             EEEeeCCCcEEEEEe---CCCcEEEEeCCCCceEEEEec------------------------------CCceeEEEEcC
Q 045370           70 LLTISGGTTFFVSSS---LDATCKVWDLGSGILIQTQVY------------------------------PQAVTAIAFHP  116 (350)
Q Consensus        70 ~~~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~------------------------------~~~v~~~~~~~  116 (350)
                      +++.+.++..+++..   .++.|.+||+.+++....+..                              ...+..++|+|
T Consensus       125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~  204 (343)
T 2qe8_A          125 LAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA  204 (343)
T ss_dssp             EEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred             EEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence            888765566666665   688999999988776554321                              02357899999


Q ss_pred             CCcEEEEEccCC-eEEEEeCCccccccccccccccce--eeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEE
Q 045370          117 GEQLLFAGSIDG-RIFVSPLKFLLLEDHFIVGEDQHS--VLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSI  191 (350)
Q Consensus       117 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~  191 (350)
                      +++.|+.+..++ .++.++.....  ...........  ...++......+++++++  +++...++.|.+||..+++..
T Consensus       205 dg~~ly~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          205 ENEWLYLSPMHSTSMYRIKSADLS--NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             TSCEEEEEESSCSEEEEEEHHHHT--CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEHHHhc--CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence            999888887665 55555432110  00000000000  112344456778999998  666667889999999566643


Q ss_pred             EEecc-CCCceeEEEEEccCCeEEeeecCc
Q 045370          192 RRFNH-KKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       192 ~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..... +...+.+++|.+++.++++.+...
T Consensus       283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             EEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            33321 244688999999998877665543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=3.3e-09  Score=100.69  Aligned_cols=179  Identities=13%  Similarity=0.059  Sum_probs=109.9

Q ss_pred             CeecCCCCEEEEEeCC-----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISGSDD-----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++|||||++||.++.+     ..|++||+.+                           +..... ..+...+..++|++ 
T Consensus       168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t---------------------------g~~~~~-~~~~~~~~~~~wsp-  218 (741)
T 1yr2_A          168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVAD---------------------------GKPLAD-ELKWVKFSGLAWLG-  218 (741)
T ss_dssp             EEECTTSSEEEEEEEETTCSEEEEEEEETTT---------------------------CCEEEE-EEEEEESCCCEEST-
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------------CCCCCc-cCCCceeccEEEEC-
Confidence            3799999999887654     4699999983                           222211 11122235677866 


Q ss_pred             CCcEEEEEeCCCc--------------EEEEeCCCCce--EEEEec---CCceeEEEEcCCCcEEEEEccCC-----eEE
Q 045370           76 GTTFFVSSSLDAT--------------CKVWDLGSGIL--IQTQVY---PQAVTAIAFHPGEQLLFAGSIDG-----RIF  131 (350)
Q Consensus        76 ~~~~l~s~~~d~~--------------v~vwd~~~~~~--~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg-----~i~  131 (350)
                      + +.|+.++.++.              |.+|++.++..  ...+..   ...+..+.|+|+|++|+..+.++     .|+
T Consensus       219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence            5 56666666554              89999987763  222222   23588999999999888777544     899


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC----CCcEEEEECCCc--eEEEEeccCCCceeE
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE----DKTVCLWDVTRR--VSIRRFNHKKGVVTN  203 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~----dg~v~iwd~~~~--~~~~~~~~~~~~v~~  203 (350)
                      +||+..+..        .....+..+...+.... +|++  |+..+.    ++.|.+||+.++  .....+..+...+..
T Consensus       298 ~~d~~~~~~--------~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          298 VARVTNGKI--------GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             EEEEETTEE--------CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             EEECCCCCC--------cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence            999875310        10223444444444443 3655  555554    356999999874  334444445556667


Q ss_pred             EEEEccCCeEEeeecC
Q 045370          204 LVVIRQSSLLSEVSNC  219 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~  219 (350)
                      ++|+ ++.++++...+
T Consensus       369 ~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHD  383 (741)
T ss_dssp             EEEE-BTEEEEEEEET
T ss_pred             EEEE-CCEEEEEEEEC
Confidence            7777 45555555444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.14  E-value=3.6e-09  Score=92.93  Aligned_cols=179  Identities=12%  Similarity=0.027  Sum_probs=114.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+++|+++++...++.|++||..+                           ......... ..... ++|.+ ++..+
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~---------------------------g~~~~~~~~-~~~~~-ia~~~-~g~~l  185 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDD---------------------------NKVTTVHPG-FKGGK-PAVTK-DKQRV  185 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTT---------------------------TEEEEEEET-CCBCB-CEECT-TSSEE
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCC---------------------------CEEEEeecc-CCCCc-eeEec-CCCcE
Confidence            57899999888887789999999872                           222222222 22233 77755 56677


Q ss_pred             EEEeCCC--cEEEEeCCCCceEEEE----e-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           81 VSSSLDA--TCKVWDLGSGILIQTQ----V-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        81 ~s~~~d~--~v~vwd~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      +++..++  .|.+|+...+.....+    . ....+.+++++|++..|+++..++.|+.||............      .
T Consensus       186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~------~  259 (409)
T 3hrp_A          186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL------E  259 (409)
T ss_dssp             EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC------C
T ss_pred             EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc------c
Confidence            7777665  7889998776654444    2 345678999999655566677789999999875432110000      0


Q ss_pred             eeccCCce--EEEEecCC-e--EEEEeCCCcEEEEECCCceEEEEeccC---------------CCceeEEEEEccCCeE
Q 045370          154 LKGHNGSI--TALAFSAS-H--LISASEDKTVCLWDVTRRVSIRRFNHK---------------KGVVTNLVVIRQSSLL  213 (350)
Q Consensus       154 ~~~~~~~i--~~~~~~~~-~--l~s~~~dg~v~iwd~~~~~~~~~~~~~---------------~~~v~~l~~~~~~~~l  213 (350)
                      ..++...-  ..++|+|+ +  +++-..++.|+.||....  +..+.++               ......++++|+|.++
T Consensus       260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred             ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence            11111111  38999995 5  555567789999998654  2233222               2347899999999966


Q ss_pred             Eeee
Q 045370          214 SEVS  217 (350)
Q Consensus       214 ~~~~  217 (350)
                      ++-+
T Consensus       338 vad~  341 (409)
T 3hrp_A          338 IVDG  341 (409)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            6544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.11  E-value=1.1e-08  Score=83.28  Aligned_cols=182  Identities=7%  Similarity=0.027  Sum_probs=120.1

Q ss_pred             CeecCCCCEEEEEeC--CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD--DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~   77 (350)
                      |+|+|||.++++.+.  ++.|.++|+.+                           +.....+.- .......+++.  ++
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~t---------------------------g~v~~~i~l~~~~fgeGi~~~--g~   76 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQT---------------------------GKVENIHKMDDSYFGEGLTLL--NE   76 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTT---------------------------CCEEEEEECCTTCCEEEEEEE--TT
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCC---------------------------CCEEEEEecCCCcceEEEEEe--CC
Confidence            468898755555543  68999999983                           444433321 11122345553  34


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      .+.++.-.++.+.++|..+.+.+..+... ..  ...+++++..++++..++.|.++|..+.+.........     -..
T Consensus        77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-----~~~  149 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-----NGH  149 (266)
T ss_dssp             EEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-----TTE
T ss_pred             EEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-----CCc
Confidence            56666667899999999999999888755 33  34455688877777788999999998755433221110     000


Q ss_pred             cCCceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEEeccC-------------CCceeEEEEEccCCeEEeeecC
Q 045370          157 HNGSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRRFNHK-------------KGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       157 ~~~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .-..++.+.|. ++ +++.. .++.|.+.|..+++.+..+...             ......++|+|+++.+++++..
T Consensus       150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            11246778888 55 44444 5789999999999999888631             1256899999998866666644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.11  E-value=3.4e-08  Score=85.58  Aligned_cols=194  Identities=11%  Similarity=-0.058  Sum_probs=118.0

Q ss_pred             CeecCCCCEEEEEeC--CCcEEEEeCccccccccccccccccccccEEEeeccccccceee-eccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD--DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY-SLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~   77 (350)
                      ++|||||++|+.+..  ++.|.++| .+                           ...... +. ...   ++.+.+.+.
T Consensus       130 ~~~spDG~~l~v~n~~~~~~v~viD-~t---------------------------~~~~~~~i~-~~~---~~~~~~~~~  177 (373)
T 2mad_H          130 NANTPNNADLLFFQFAAGPAVGLVV-QG---------------------------GSSDDQLLS-SPT---CYHIHPGAP  177 (373)
T ss_pred             eEECCCCCEEEEEecCCCCeEEEEE-CC---------------------------CCEEeEEcC-CCc---eEEEEeCCC
Confidence            479999999998874  57899999 83                           333333 21 111   234445555


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEe------cCCc-eeEEEEcCCCcEEEEEccCCeEEEEeCCccccc--ccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQV------YPQA-VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLE--DHFIVGE  148 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~  148 (350)
                      ..+++.+.||.+.++|. +++......      ...+ .....+.+++..++..+..+.+.+.|+......  ..+....
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence            66778888999999999 887663321      1112 123455666655554456789999998643211  0000000


Q ss_pred             ccceeeeccCCceEEEEecCCe--EEEEeC----------CCcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEe
Q 045370          149 DQHSVLKGHNGSITALAFSASH--LISASE----------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSE  215 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~--l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~  215 (350)
                      ...............+.++|++  ++++..          ++.|.++|+.+++.+.++.. .....+++|+|||+ ++++
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v  335 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEE
Confidence            0000001112334557889987  554432          35799999999999999963 34689999999999 7776


Q ss_pred             eecCccccccccC
Q 045370          216 VSNCQRKLKKDRM  228 (350)
Q Consensus       216 ~~~~~~~~~~~~~  228 (350)
                      +......+.+.+.
T Consensus       336 ~~~~~~~V~ViD~  348 (373)
T 2mad_H          336 LSAGTEVLHIYDA  348 (373)
T ss_pred             EcCCCCeEEEEEC
Confidence            6543444444433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=4.5e-08  Score=81.80  Aligned_cols=184  Identities=9%  Similarity=-0.038  Sum_probs=119.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|+++++...++.|..||...                           .............+.++++.+ ++.++
T Consensus        67 i~~~~~g~l~v~~~~~~~v~~~d~~g---------------------------~~~~~~~~~~~~~~~~i~~~~-~g~l~  118 (300)
T 2qc5_A           67 LIVSSLGDIWFTENGANKIGKLSKKG---------------------------GFTEYPLPQPDSGPYGITEGL-NGDIW  118 (300)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTS---------------------------CEEEEECSSTTCCEEEEEECS-TTCEE
T ss_pred             EEECCCCCEEEEecCCCeEEEECCCC---------------------------CeEEecCCCCCCCCccceECC-CCCEE
Confidence            35677787777666677788887651                           111111122335678888765 66777


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-Ee-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++...++.|..+|.. ++.... .. ....+..++++++++.+++...++.|..||.. +....         .....+.
T Consensus       119 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~---------~~~~~~~  187 (300)
T 2qc5_A          119 FTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEE---------YPLPTNA  187 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE---------EECSSTT
T ss_pred             EEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEE---------eeCCCCC
Confidence            776668899999988 655433 22 34568899999999977766667899999873 32211         0122334


Q ss_pred             CceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          159 GSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                      ..+.++++++++ +..+. ..+.|.+||. +++.... +..+...+.+++++++|.+.++......+..
T Consensus       188 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          188 AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR  255 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence            578899999988 55554 4668999998 4544332 3334566889999999997775544444443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.09  E-value=5.1e-08  Score=81.48  Aligned_cols=184  Identities=9%  Similarity=-0.025  Sum_probs=121.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|+++++...++.|.+||...                           .........+...+.++++.+ ++.++
T Consensus        25 i~~d~~g~l~v~~~~~~~v~~~~~~~---------------------------~~~~~~~~~~~~~~~~i~~~~-~g~l~   76 (300)
T 2qc5_A           25 ITSSEDGKVWFTQHKANKISSLDQSG---------------------------RIKEFEVPTPDAKVMCLIVSS-LGDIW   76 (300)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTS---------------------------CEEEEECSSTTCCEEEEEECT-TSCEE
T ss_pred             eeECCCCCEEEEcCCCCeEEEECCCC---------------------------ceEEEECCCCCCcceeEEECC-CCCEE
Confidence            46788998888777788999998651                           000011122335678888754 66766


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-e-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-V-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++...++.|..||.. ++..... . ....+.+++++++++++++...++.|..||.. +....         ..+....
T Consensus        77 v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~---------~~~~~~~  145 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE---------YDLPNKG  145 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE---------EECSSTT
T ss_pred             EEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE---------ccCCCCC
Confidence            666667889999988 6553221 1 23568999999999888887778899999876 32211         0122234


Q ss_pred             CceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCccccc
Q 045370          159 GSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~  224 (350)
                      ..+.++++.+++ +..+. .++.|..||. +++.... ...+...+.+++++++|.+.++......+..
T Consensus       146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            578899999988 55444 4788999998 5554432 2234456889999999987775544444433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=6.3e-09  Score=87.70  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             CceEEEEeeCCCcEEEE----EeC-------------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-
Q 045370           66 SVTGLLTISGGTTFFVS----SSL-------------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-  127 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s----~~~-------------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  127 (350)
                      .+.++++.+ ++.++++    |..             .+.|..||..+++..... .......++|+|+++.|+++... 
T Consensus       132 ~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          132 SPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             CCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCC
Confidence            456777755 6676665    332             256777887777655444 44567889999999988877665 


Q ss_pred             -----CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCce
Q 045370          128 -----GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVV  201 (350)
Q Consensus       128 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  201 (350)
                           +.|.+|++........     ..  ...........+++++++ |.+++.+| |.+||. .++.+..+..+. .+
T Consensus       210 ~~~~~~~i~~~~~~~~~l~~~-----~~--~~~~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~-~g~~~~~~~~~~-~~  279 (305)
T 3dr2_A          210 QGHGSVEITAFAWRDGALHDR-----RH--FASVPDGLPDGFCVDRGGWLWSSSGTG-VCVFDS-DGQLLGHIPTPG-TA  279 (305)
T ss_dssp             ---CCCEEEEEEEETTEEEEE-----EE--EECCSSSCCCSEEECTTSCEEECCSSE-EEEECT-TSCEEEEEECSS-CC
T ss_pred             cCCCCCEEEEEEecCCCccCC-----eE--EEECCCCCCCeEEECCCCCEEEecCCc-EEEECC-CCCEEEEEECCC-ce
Confidence                 7899999874321110     00  011123445678899999 77777554 999998 477777776444 58


Q ss_pred             eEEEEEccCCeEEeeecC
Q 045370          202 TNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~~  219 (350)
                      .+++|+|+++.|..++.+
T Consensus       280 ~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          280 SNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             CEEEECTTSCEEEEEETT
T ss_pred             eEEEEeCCCCEEEEEcCC
Confidence            999999998877766554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.06  E-value=5.9e-08  Score=82.55  Aligned_cols=177  Identities=11%  Similarity=0.003  Sum_probs=111.9

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|+|++ .++++...++.|..||..+                           ... ..+ .....+.++++.+ ++.++
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~---------------------------~~~-~~~-~~~~~v~~i~~~~-dg~l~  104 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLAS---------------------------GRK-TVH-ALPFMGSALAKIS-DSKQL  104 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTT---------------------------TEE-EEE-ECSSCEEEEEEEE-TTEEE
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCC---------------------------CcE-EEE-ECCCcceEEEEeC-CCeEE
Confidence            688875 4566666788999999872                           211 111 2245788898876 55655


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec-----CCceeEEEEcCCCcEEEEEcc------CCeEEEEeCCccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY-----PQAVTAIAFHPGEQLLFAGSI------DGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      ++ +.+ .|.+||..+++.......     ...+..++++|+|+++++...      .+.|+.++  .+...        
T Consensus       105 v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~--------  172 (326)
T 2ghs_A          105 IA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT--------  172 (326)
T ss_dssp             EE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE--------
T ss_pred             EE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE--------
Confidence            54 344 499999988876544332     135889999999987665432      24566665  22211        


Q ss_pred             cceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECC--Cc-e-----EEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          150 QHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVT--RR-V-----SIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~--~~-~-----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                         .+..+......++|+|++  + ++.+.++.|.+||+.  ++ .     .+..+......+..++++++|.+.++...
T Consensus       173 ---~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          173 ---KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             ---EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred             ---EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC
Confidence               111223456789999998  4 444567899999986  55 2     23333334456788999999988776544


Q ss_pred             Ccccc
Q 045370          219 CQRKL  223 (350)
Q Consensus       219 ~~~~~  223 (350)
                      .+.+.
T Consensus       250 ~~~v~  254 (326)
T 2ghs_A          250 EGAVD  254 (326)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            44443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.06  E-value=3.2e-08  Score=79.62  Aligned_cols=180  Identities=10%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             CeecCCCCEEEEEeCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCc--eEEEEeeCC
Q 045370            1 MVFSDDGFLLISGSDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSV--TGLLTISGG   76 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~   76 (350)
                      |.|+ ++.++.+.+.+|  .|+++|+++                           +.......-. ...  -.++..  +
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~T---------------------------gkv~~~~~l~-~~~FgeGit~~--g   96 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIES---------------------------GKTLQQIELG-KRYFGEGISDW--K   96 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTT---------------------------CCEEEEEECC-TTCCEEEEEEE--T
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCC---------------------------CcEEEEEecC-CccceeEEEEe--C
Confidence            3577 677777777766  899999983                           4444433222 222  234442  4


Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      +.+.+....++.+.++|..+.+.+..+.....-..++  +++..|+....++.|.++|..+.+........      ..+
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~------~~g  168 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVT------AHG  168 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECE------ETT
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEec------cCC
Confidence            4555556678999999999999999988765444444  57787877777889999999876544322211      011


Q ss_pred             c-CCceEEEEecCCeEEEEe-CCCcEEEEECCCceEEEEeccC------------CCceeEEEEEccCCeEEeeecC
Q 045370          157 H-NGSITALAFSASHLISAS-EDKTVCLWDVTRRVSIRRFNHK------------KGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       157 ~-~~~i~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------------~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      . -..++.+.|....+.+.. .++.|.+.|..+++.+..+...            ......++|+|+++.|++++..
T Consensus       169 ~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          169 EELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            1 134566777733344444 6789999999999999887531            1356899999998877766643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=3.4e-08  Score=82.83  Aligned_cols=179  Identities=9%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             eecCCC-CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|+|++ .++++...++.|..||..+                           ... .. ......+.++++.+ ++.++
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~---------------------------~~~-~~-~~~~~~~~~i~~~~-dG~l~   68 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFT---------------------------KQV-QR-VTMDAPVSSVALRQ-SGGYV   68 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTT---------------------------CCE-EE-EECSSCEEEEEEBT-TSSEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCC---------------------------CcE-EE-EeCCCceEEEEECC-CCCEE
Confidence            588854 5666666789999999872                           221 11 22346788898866 55644


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec-----CCceeEEEEcCCCcEEEEEcc-----------CCeEEEEeCCcccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY-----PQAVTAIAFHPGEQLLFAGSI-----------DGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~  144 (350)
                      + +. ++.|.+||..+++.......     ...+..++++|+|+++++...           .+.|+.++.. +.     
T Consensus        69 v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-----  140 (297)
T 3g4e_A           69 A-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-----  140 (297)
T ss_dssp             E-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-----
T ss_pred             E-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-----
Confidence            4 44 56799999998876544332     134788999999996665432           2344444432 11     


Q ss_pred             ccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEEC--CCceE-----EEEeccCCCceeEEEEEccCCeEE
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDV--TRRVS-----IRRFNHKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~--~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~  214 (350)
                            ...+..+....+.++|+|++   +++.+.++.|.+||+  .++..     +..+..+.+....++++++|.+.+
T Consensus       141 ------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          141 ------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             ------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred             ------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence                  11222333456889999998   455666789999987  45543     233333345678999999998777


Q ss_pred             eeecCccccc
Q 045370          215 EVSNCQRKLK  224 (350)
Q Consensus       215 ~~~~~~~~~~  224 (350)
                      +....+++..
T Consensus       215 a~~~~~~v~~  224 (297)
T 3g4e_A          215 ACYNGGRVIR  224 (297)
T ss_dssp             EEETTTEEEE
T ss_pred             EEcCCCEEEE
Confidence            6655544443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=5.8e-08  Score=78.15  Aligned_cols=178  Identities=12%  Similarity=0.076  Sum_probs=119.7

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCce--EEEEeeCCCcE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVT--GLLTISGGTTF   79 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~   79 (350)
                      .|+ ++.++++.+.+|.|+++|+++                           ++.....  -.....  .++.  .++.+
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~T---------------------------gkv~~~~--l~~~~FgeGit~--~g~~L  108 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLES---------------------------AQPVWME--RLGNIFAEGLAS--DGERL  108 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSC---------------------------SSCSEEE--ECTTCCEEEEEE--CSSCE
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCC---------------------------CcEEeEE--CCCCcceeEEEE--eCCEE
Confidence            455 356777888889999999983                           4444443  112222  3444  24566


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++....++.+.+||..+.+.+..+.....-..++  +++..|+.+..++.|.++|..+.+.........     -...-.
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-----~g~~v~  181 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-----RGQPVE  181 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-----TTEECC
T ss_pred             EEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-----CCcccc
Confidence            6666778999999999999999988765555555  467888888889999999998765443322210     001113


Q ss_pred             ceEEEEecCCeEEEEe-CCCcEEEEECCCceEEEEeccC-------------CCceeEEEEEccCCeEEeeec
Q 045370          160 SITALAFSASHLISAS-EDKTVCLWDVTRRVSIRRFNHK-------------KGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       160 ~i~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .++.+.|....+.+.. .+..|.+.|..+++.+..+...             ......++|+|+++.|++++.
T Consensus       182 ~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          182 LINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            4567777733444444 6789999999999998887521             136789999998766655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.01  E-value=3.8e-08  Score=93.42  Aligned_cols=180  Identities=11%  Similarity=-0.011  Sum_probs=114.2

Q ss_pred             CeecCCCCEEEEEeCCCc--------------EEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC
Q 045370            1 MVFSDDGFLLISGSDDGM--------------ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~   66 (350)
                      ++|||| +.|+.++.|+.              |++|++.+...                       ....+.....+...
T Consensus       214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------------------~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-----------------------ADQPVFATPELPKR  269 (741)
T ss_dssp             CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-----------------------GCEEEECCTTCTTC
T ss_pred             EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-----------------------hCEEEeccCCCCeE
Confidence            579999 99988887664              77777752110                       01112222233345


Q ss_pred             ceEEEEeeCCCcEEEEEeCCC-----cEEEEeCCCC--c-eEEEEecCCceeEEEEcCCCcEEEEEcc----CCeEEEEe
Q 045370           67 VTGLLTISGGTTFFVSSSLDA-----TCKVWDLGSG--I-LIQTQVYPQAVTAIAFHPGEQLLFAGSI----DGRIFVSP  134 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~d~-----~v~vwd~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d  134 (350)
                      +.++.|++ ++++++..+.++     .|.+||+.++  . ......+...+.... +|+|..|+..+.    ++.|.+||
T Consensus       270 ~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          270 GHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             EEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence            77888855 777777666543     7999999877  4 444444444444443 488888877765    35699999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECC-CceEEEEecc-CCCceeEEEEEccCC
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVT-RRVSIRRFNH-KKGVVTNLVVIRQSS  211 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~~~~~~  211 (350)
                      +..+.        ......+..+...+..+.++.+. +++...|+..+||.+. ++..+..+.. +.+.+..+.++|+++
T Consensus       348 ~~~~~--------~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          348 LSGST--------PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             CSSSS--------CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             CCCCc--------cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence            87531        01111333445567778888555 7788888887777544 4556666653 356788999999987


Q ss_pred             eEE
Q 045370          212 LLS  214 (350)
Q Consensus       212 ~l~  214 (350)
                      .++
T Consensus       420 ~l~  422 (741)
T 1yr2_A          420 HAY  422 (741)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.00  E-value=1.5e-08  Score=95.36  Aligned_cols=178  Identities=17%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             CeecCCCCEEEEE-----eCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC
Q 045370            1 MVFSDDGFLLISG-----SDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG   75 (350)
Q Consensus         1 i~~s~dg~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (350)
                      ++|||||++||.+     +.+..|++||+++                           +..+... .+......++|+  
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------------g~~~~~~-~~~~k~~~~~Ws--  183 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------------KQPLETP-LKDVKFSGISWL--  183 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------------CSEEEEE-EEEEESCCCEEE--
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------------CCCCccc-cCCceeccEEEe--
Confidence            3799999998843     3336799999983                           2222111 111113456786  


Q ss_pred             CCcEEEEEeCCC-------------cEEEEeCCCCce--EEEEe----cCCceeEEEEcCCCcEEEEEcc----CCeEEE
Q 045370           76 GTTFFVSSSLDA-------------TCKVWDLGSGIL--IQTQV----YPQAVTAIAFHPGEQLLFAGSI----DGRIFV  132 (350)
Q Consensus        76 ~~~~l~s~~~d~-------------~v~vwd~~~~~~--~~~~~----~~~~v~~~~~~~~~~~l~~~~~----dg~i~i  132 (350)
                      +++.|+.++.+.             .|.+|++.++..  ...+.    +......+.|+|+|++|+....    ++.|++
T Consensus       184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            556666666664             399999988653  22222    2334678999999998865432    358999


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCC---CcEEEEECCCceE--EEEeccCCCceeEE
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED---KTVCLWDVTRRVS--IRRFNHKKGVVTNL  204 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~l  204 (350)
                      +|+..+.         .....+..+....... +++++   ++.+..+   +.|..+|+.++..  ...+..|...+.  
T Consensus       264 ~d~~~~~---------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--  331 (693)
T 3iuj_A          264 KDLSQEN---------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--  331 (693)
T ss_dssp             EETTSTT---------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--
T ss_pred             EECCCCC---------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--
Confidence            9987532         1223444555555554 44444   4444443   6799999987653  234444555544  


Q ss_pred             EEEccCCeEEeeecCc
Q 045370          205 VVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       205 ~~~~~~~~l~~~~~~~  220 (350)
                      .|+++++.|+....++
T Consensus       332 ~~s~~g~~lv~~~~~~  347 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVD  347 (693)
T ss_dssp             EEEEETTEEEEEEEET
T ss_pred             EEEEECCEEEEEEEEC
Confidence            8999999887666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=5.3e-07  Score=71.94  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=117.8

Q ss_pred             eecCCCCEEEEEeCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCC-ceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSS-VTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~   78 (350)
                      .|++ +.++.+.+.+|  .|+++|+.+                           +.......-.... --.++..  ++.
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~t---------------------------gkv~~~~~l~~~~fgeGi~~~--~~~   76 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLET---------------------------GRILQRAEVPPPYFGAGIVAW--RDR   76 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTT---------------------------CCEEEEEECCTTCCEEEEEEE--TTE
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCC---------------------------CCEEEEEeCCCCcceeEEEEe--CCE
Confidence            4665 55666666654  899999983                           4444333222111 1233332  456


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +++....++.+.++|..+.+.+..+.....-..++  +++..|+.+..++.|.++|..+...........     -...-
T Consensus        77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-----~g~~~  149 (243)
T 3mbr_X           77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-----GGRPL  149 (243)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-----TTEEC
T ss_pred             EEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-----CCccc
Confidence            66666778999999999999999988766555555  467777777778999999998765443322210     00011


Q ss_pred             CceEEEEecCCeEEEEe-CCCcEEEEECCCceEEEEeccC-------------CCceeEEEEEccCCeEEeeec
Q 045370          159 GSITALAFSASHLISAS-EDKTVCLWDVTRRVSIRRFNHK-------------KGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       159 ~~i~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ..++.+.+....+.+.. .+..|.+.|..+++.+..+...             ......++++|+++.|++++.
T Consensus       150 ~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          150 DNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            34566777644444444 6779999999999998887511             135789999998876665654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.94  E-value=8.4e-08  Score=82.44  Aligned_cols=196  Identities=14%  Similarity=0.051  Sum_probs=121.4

Q ss_pred             CeecCCCCEEEEEeC--CCcEEEEeCcccccccccccc--------c-----cccccccEEEeeccccccceeeeccc--
Q 045370            1 MVFSDDGFLLISGSD--DGMICVWSMTRLLKQTSELMH--------H-----SDQLDQRLIEMELRSLRSLLHYSLEH--   63 (350)
Q Consensus         1 i~~s~dg~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~h--   63 (350)
                      ++|+|||++|+.+..  ++.|.++|+.+..........        .     ....++.+.................+  
T Consensus       142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~  221 (386)
T 3sjl_D          142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  221 (386)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence            479999999888864  689999999874432211110        0     11234444444443322221111111  


Q ss_pred             --cCCce-EEEEeeCCCcEEEEEeCCCcEEEEeCCCCce--EEEEe-----------cCCceeEEEEcCCCcEEEEEcc-
Q 045370           64 --KSSVT-GLLTISGGTTFFVSSSLDATCKVWDLGSGIL--IQTQV-----------YPQAVTAIAFHPGEQLLFAGSI-  126 (350)
Q Consensus        64 --~~~v~-~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~-  126 (350)
                        ..++. ...|.++++.+++ .+.+|.|.+.|+.++..  ...+.           .+.....++++++++.+++... 
T Consensus       222 ~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~  300 (386)
T 3sjl_D          222 PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  300 (386)
T ss_dssp             CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence              12221 1345555665444 55689999999987643  22222           1334556888999998888653 


Q ss_pred             ---------CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEe-CCCcEEEEECCCceEEEE
Q 045370          127 ---------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISAS-EDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       127 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~-~dg~v~iwd~~~~~~~~~  193 (350)
                               .+.|.++|+.+.+...          .+... ..+..+++++++   |++++ .++.|.++|..+++.+.+
T Consensus       301 ~~~~~hk~~~~~V~viD~~t~kv~~----------~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          301 RDEWRHKTASRFVVVLDAKTGERLA----------KFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEE----------EEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             ccccccCCCCCEEEEEECCCCeEEE----------EEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence                     2579999998665443          22211 367889999997   55544 589999999999999999


Q ss_pred             eccCCCceeEEEEEcc
Q 045370          194 FNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       194 ~~~~~~~v~~l~~~~~  209 (350)
                      +.. .+....|.+++|
T Consensus       370 i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          370 VNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             ECC-CCSSCCEEEECC
T ss_pred             ecC-CCCCceeEECCc
Confidence            974 344567778776

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=1.1e-07  Score=82.60  Aligned_cols=188  Identities=14%  Similarity=0.100  Sum_probs=118.9

Q ss_pred             eecCCCCEEEEEeCC------CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccC---CceEEEE
Q 045370            2 VFSDDGFLLISGSDD------GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKS---SVTGLLT   72 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~   72 (350)
                      ..+||| +++++..+      |.|.++|.+                           +...+..+.....   .-..+-|
T Consensus       144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~---------------------------T~~v~~~~~~~~~~~~~~Yd~~~  195 (462)
T 2ece_A          144 HCGPDA-IYISALGNEEGEGPGGILMLDHY---------------------------SFEPLGKWEIDRGDQYLAYDFWW  195 (462)
T ss_dssp             EECSSC-EEEEEEEETTSCSCCEEEEECTT---------------------------TCCEEEECCSBCTTCCCCCCEEE
T ss_pred             eECCCe-EEEEcCCCcCCCCCCeEEEEECC---------------------------CCeEEEEEccCCCCccccceEEE
Confidence            457899 77776666      789999988                           3444444432211   1223544


Q ss_pred             eeCCCcEEEEEe-------------------CCCcEEEEeCCCCceEEEEecC---CceeEEEE--cCCCcEEEEEcc--
Q 045370           73 ISGGTTFFVSSS-------------------LDATCKVWDLGSGILIQTQVYP---QAVTAIAF--HPGEQLLFAGSI--  126 (350)
Q Consensus        73 ~~~~~~~l~s~~-------------------~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~l~~~~~--  126 (350)
                       +++++.+++..                   .+.+|.+||+.+++.+..+...   .....+.|  +|+++++++++.  
T Consensus       196 -~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~  274 (462)
T 2ece_A          196 -NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVS  274 (462)
T ss_dssp             -ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEE
T ss_pred             -CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeee
Confidence             45667777774                   3789999999999888887654   24556666  999999888774  


Q ss_pred             ----CCeEEEEeCCccccccccccc--cc-cceee-------eccCCceEEEEecCCe--EEE-EeCCCcEEEEECC---
Q 045370          127 ----DGRIFVSPLKFLLLEDHFIVG--ED-QHSVL-------KGHNGSITALAFSASH--LIS-ASEDKTVCLWDVT---  186 (350)
Q Consensus       127 ----dg~i~i~d~~~~~~~~~~~~~--~~-~~~~~-------~~~~~~i~~~~~~~~~--l~s-~~~dg~v~iwd~~---  186 (350)
                          ++.|.+|....+.......+.  .. ....+       .+-......|.++|++  |.+ .-..+.|.+||+.   
T Consensus       275 ~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~  354 (462)
T 2ece_A          275 LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF  354 (462)
T ss_dssp             TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred             ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence                568877766543221111110  00 00001       0012457889999999  444 4457899999985   


Q ss_pred             CceEEEEeccCC--------------CceeEEEEEccCCeEEeeec
Q 045370          187 RRVSIRRFNHKK--------------GVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       187 ~~~~~~~~~~~~--------------~~v~~l~~~~~~~~l~~~~~  218 (350)
                      +.+.+..+....              +....++++|+|++|+++..
T Consensus       355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            346666664210              13588999999999998774

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.91  E-value=4.1e-08  Score=85.82  Aligned_cols=64  Identities=13%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             EEecCCe--EEEEeC----------CCcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCccccccccC
Q 045370          164 LAFSASH--LISASE----------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       164 ~~~~~~~--l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~~~~~~~~~  228 (350)
                      ++++|++  +++...          ++.|.++|+.+++.+.++.. .....++.|+|+++ +++++......+.+.+.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            6788887  444432          35799999999999999873 23578999999999 88877754444444433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.90  E-value=1.3e-07  Score=79.58  Aligned_cols=172  Identities=13%  Similarity=0.088  Sum_probs=111.8

Q ss_pred             eecCCCC-EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGF-LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .|+|+|+ +++++..++.|..|+..                            +. ...+..+...+.++++.+ ++.++
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~~----------------------------g~-~~~~~~~~~~~~gl~~d~-dG~l~  100 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRED----------------------------GT-VDVLLDATAFTNGNAVDA-QQRLV  100 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEETT----------------------------SC-EEEEEESCSCEEEEEECT-TSCEE
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeCC----------------------------CC-EEEEeCCCCccceeeECC-CCCEE
Confidence            6899998 66777778999999865                            11 223334556788888865 66766


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec-----CCceeEEEEcCCCcEEEE----Ecc-------------CCeEEEEeCCcc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY-----PQAVTAIAFHPGEQLLFA----GSI-------------DGRIFVSPLKFL  138 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~  138 (350)
                      ++...++.|.+|+.. ++.......     ...+..++++|+|+++++    |..             .+.|+.||..++
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            555556789999986 654333221     134678999999998876    332             256777776543


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCC------CcEEEEECCCceEE--EEe-ccCCCceeEEEEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASED------KTVCLWDVTRRVSI--RRF-NHKKGVVTNLVVI  207 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~d------g~v~iwd~~~~~~~--~~~-~~~~~~v~~l~~~  207 (350)
                      ...           .+. .....+.++|+|++  |+.+...      +.|++||+..+...  ..+ ....+....++++
T Consensus       180 ~~~-----------~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d  247 (305)
T 3dr2_A          180 PLQ-----------RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD  247 (305)
T ss_dssp             CCE-----------EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC
T ss_pred             cEE-----------EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC
Confidence            221           111 33456789999998  6666554      78999998765411  111 1123456789999


Q ss_pred             ccCCeEEee
Q 045370          208 RQSSLLSEV  216 (350)
Q Consensus       208 ~~~~~l~~~  216 (350)
                      ++|++.++.
T Consensus       248 ~~G~lwv~~  256 (305)
T 3dr2_A          248 RGGWLWSSS  256 (305)
T ss_dssp             TTSCEEECC
T ss_pred             CCCCEEEec
Confidence            999966644

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.85  E-value=1e-07  Score=81.73  Aligned_cols=201  Identities=11%  Similarity=0.091  Sum_probs=114.6

Q ss_pred             CeecCCCCEEEEEeC--CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSD--DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      |+++|+|+++++...  ++.++||.+..+                .+..+.     ........|-..+.++++.+ ++.
T Consensus        22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g----------------~~~~~p-----~~~~~~~~~~~~p~gv~~d~-~g~   79 (343)
T 2qe8_A           22 ITLTPDGRLFLSLHQFYQPEMQVAELTQD----------------GLIPFP-----PQSGNAIITFDTVLGIKSDG-NGI   79 (343)
T ss_dssp             EEECTTSCEEEEECGGGCCSCSEEEEETT----------------EEEESC-----CCCSSCCCCCSCEEEEEECS-SSE
T ss_pred             EEECCCCCEEEEeCCCCCCceEEEEECCC----------------CeecCC-----CcccCcccceeEeeEEEEcC-CCc
Confidence            578999999888642  343566655411                000000     00011224667889999866 456


Q ss_pred             EEEEEeC-----CCcEEEEeCCCCceEEEEecC-------CceeEEEEcCCCcEE-EEEc---cCCeEEEEeCCcccccc
Q 045370           79 FFVSSSL-----DATCKVWDLGSGILIQTQVYP-------QAVTAIAFHPGEQLL-FAGS---IDGRIFVSPLKFLLLED  142 (350)
Q Consensus        79 ~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l-~~~~---~dg~i~i~d~~~~~~~~  142 (350)
                      ++++-..     ++.|.+||+.+++.+..+..+       ..+..+++++++..+ ++-.   .++.|.+||+.++....
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            5555433     578999999999877766532       346899999865554 4444   57899999987654322


Q ss_pred             cccc----cccc-ceeeec--------------cCCceEEEEecCCe--EEEEeCCC-cEEEEECC---Cce-----EEE
Q 045370          143 HFIV----GEDQ-HSVLKG--------------HNGSITALAFSASH--LISASEDK-TVCLWDVT---RRV-----SIR  192 (350)
Q Consensus       143 ~~~~----~~~~-~~~~~~--------------~~~~i~~~~~~~~~--l~s~~~dg-~v~iwd~~---~~~-----~~~  192 (350)
                      ....    .... .....+              ....+..|+++|++  |+.+..++ .|+.++..   .+.     ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            1100    0000 000000              11346889999998  66666555 55555432   110     000


Q ss_pred             --EeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          193 --RFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       193 --~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                        ...++.+....++++++|.++++......+.
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~  272 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIG  272 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEE
T ss_pred             ceEecccCCCCceEEECCCCCEEEEccCCCeEE
Confidence              1112334567899999998888665554444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.84  E-value=3e-07  Score=78.99  Aligned_cols=145  Identities=9%  Similarity=-0.019  Sum_probs=101.7

Q ss_pred             ecCCCCEEEEEeC-----CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            3 FSDDGFLLISGSD-----DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         3 ~s~dg~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      ..|+++.++....     ++.|.+.|..                           ....+..+.....+  .++++| ++
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~---------------------------t~~v~~~I~vG~~P--~va~sp-DG   89 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGE---------------------------AGRVIGMIDGGFLP--NPVVAD-DG   89 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETT---------------------------TTEEEEEEEECSSC--EEEECT-TS
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECC---------------------------CCeEEEEEECCCCC--cEEECC-CC
Confidence            5689988887765     6899999998                           45555555444444  477766 55


Q ss_pred             cEEEEEe----------CCCcEEEEeCCCCceEEEEecC--------CceeEEEEcCCCcEEEEEcc--CCeEEEEeCCc
Q 045370           78 TFFVSSS----------LDATCKVWDLGSGILIQTQVYP--------QAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKF  137 (350)
Q Consensus        78 ~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  137 (350)
                      ++++.+.          .++.|.+||..+++.+..+...        .....+.|+|||++++++..  ++.|.++|+.+
T Consensus        90 ~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D           90 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence            5555543          4678999999999998887543        25678999999999998864  68999999997


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceEE
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVSI  191 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~~  191 (350)
                      .+...          .+....    |....|.+   +++.+.||.+.+.++.+ ++..
T Consensus       170 ~~vv~----------tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          170 KAFKR----------MLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             TEEEE----------EEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CcEEE----------EEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence            65433          222111    11223444   77888899999999976 5543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=8.1e-10  Score=95.78  Aligned_cols=145  Identities=17%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      ++..+++++.||.|..||..+                           +.....+..  +.+.+..+.. ++..+++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t---------------------------G~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT---------------------------GSIKWTLKE--DPVLQVPTHV-EEPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT---------------------------CCEEEEEEC--CCSCCCC------CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCC---------------------------CCEEEEecC--CCceecceEc-CCCEEEEeCC
Confidence            577899999999999999883                           333333322  3343333333 4556777789


Q ss_pred             CCcEEEEeCCCCceEEEEecC--Ccee-EEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           86 DATCKVWDLGSGILIQTQVYP--QAVT-AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~--~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      |+.|..||..+|+.+......  ..+. +..+. .+..+++++.|+.++.||..+++....          +..+.    
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~----------~~~~~----  122 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT----------LSSAF----  122 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE----------ecCCC----
Confidence            999999999998876654322  1111 00111 355778888899999999997765432          11121    


Q ss_pred             EEEecCCe--EEEEeCCCcEEEEECCCceEEEEec
Q 045370          163 ALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       163 ~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      ...++|++  +++++.|+.|+.||.++++.+..+.
T Consensus       123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ----------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            12344544  8889999999999999998776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.76  E-value=1.9e-09  Score=93.38  Aligned_cols=118  Identities=19%  Similarity=0.030  Sum_probs=67.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ..+++|+.|+.|..||..+|+.+..+....   ...++|++..+++++.|+.|+.||.++++.......        ...
T Consensus        93 ~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--------~~~  161 (369)
T 2hz6_A           93 GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY--------FDY  161 (369)
T ss_dssp             --CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEE--------EEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec--------ccc
Confidence            457788889999999999999887765433   234567888999999999999999987654332111        111


Q ss_pred             CCceEEEEecC----Ce-EEEEeCCCcEEEEECCCceEEEEeccCCCceeE-EEEEccCC
Q 045370          158 NGSITALAFSA----SH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTN-LVVIRQSS  211 (350)
Q Consensus       158 ~~~i~~~~~~~----~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~~  211 (350)
                          ....+.+    ++ +++++.||.|+.||..+++.+.++.. ..++.. ..+++++.
T Consensus       162 ----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          162 ----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             ----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             ----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence                1222333    14 88889999999999999999988873 344443 44555664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.73  E-value=3.3e-06  Score=73.01  Aligned_cols=145  Identities=12%  Similarity=-0.060  Sum_probs=97.5

Q ss_pred             ecCCCCEEEEEeC--CC---cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCC
Q 045370            3 FSDDGFLLISGSD--DG---MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         3 ~s~dg~~l~sg~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (350)
                      ..|+++++++...  ..   +|.+||..+                           ...+..+.....+  .++++| ++
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t---------------------------~~~~~~i~~g~~p--~i~~sp-Dg   77 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGS---------------------------GSILGHVNGGFLP--NPVAAH-SG   77 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCC---------------------------CeEEEEecCCCCC--CeEECC-CC
Confidence            3578887777653  22   789999873                           3334444333333  788866 66


Q ss_pred             cEEEEEe----------CCCcEEEEeCCCCceEEEEecC--------CceeEEEEcCCCcEEEEEcc--CCeEEEEeCCc
Q 045370           78 TFFVSSS----------LDATCKVWDLGSGILIQTQVYP--------QAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKF  137 (350)
Q Consensus        78 ~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  137 (350)
                      ++++.+.          .++.|.+||..+.+.+..+...        .....+.|+|+|++|+++..  ++.|.++| .+
T Consensus        78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            6666654          3678999999998888776543        23568999999999998874  47899999 86


Q ss_pred             ccccccccccccccee-eeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE
Q 045370          138 LLLEDHFIVGEDQHSV-LKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~  193 (350)
                      ++...          . +.. ..   ++.+.|.+   +++.+.||.+.++|. +++.+..
T Consensus       157 ~~~~~----------~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          157 GSSDD----------QLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             CCEEe----------EEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            54321          2 211 11   23444444   777888999999999 8776643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.72  E-value=9.8e-06  Score=66.56  Aligned_cols=179  Identities=11%  Similarity=-0.045  Sum_probs=105.8

Q ss_pred             CeecCCCCEEE-EEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLI-SGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|++++..|+ +-..++.|.+++...                           ...............++++.+.++.+
T Consensus        41 i~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------------~~~~~~~~~~~~~p~~ia~d~~~~~l   93 (267)
T 1npe_A           41 LAFDCVDKVVYWTDISEPSIGRASLHG---------------------------GEPTTIIRQDLGSPEGIALDHLGRTI   93 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSS---------------------------CCCEEEECTTCCCEEEEEEETTTTEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEEecCC---------------------------CCcEEEEECCCCCccEEEEEecCCeE
Confidence            46777655444 444567888888762                           11111111222467888887656666


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecC-CceeEEEEcCCCcEEEEEcc---CCeEEEEeCCccccccccccccccceeee
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYP-QAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +++-...+.|.++++............ .....++++|++..|+.+..   .+.|..+++.....          .....
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------~~~~~  163 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------RILAQ  163 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------EEEEC
T ss_pred             EEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------EEEEE
Confidence            667677789999998754333223222 46789999997666655543   36888887752110          00111


Q ss_pred             ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ........++++|++   +++-...+.|.++|+........+.. ......++..  +..|+.+...
T Consensus       164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETT
T ss_pred             CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECC
Confidence            223467899999965   45555678999999986544333332 2334566654  4555555544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.71  E-value=2.8e-07  Score=82.79  Aligned_cols=138  Identities=12%  Similarity=0.020  Sum_probs=94.2

Q ss_pred             CcEEEEeCCC--Cce-EEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccc--cccccccccceeeeccCCc
Q 045370           87 ATCKVWDLGS--GIL-IQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLE--DHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        87 ~~v~vwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~  160 (350)
                      +.|.+.|..+  ++. +..+.......++.++|||+++++++ .+..|.++|+.+....  ............. .-...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCC
Confidence            4589999998  655 66777777889999999999887766 5689999999965311  0000011111111 22356


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCC----------ceEEEEeccCCCce-----eEEEEEccCCeEEeeecC--cc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTR----------RVSIRRFNHKKGVV-----TNLVVIRQSSLLSEVSNC--QR  221 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v-----~~l~~~~~~~~l~~~~~~--~~  221 (350)
                      ...++|+|+|  +++.-.|+.|.+||+.+          .+.+.++..|..+-     .++.++|||++|+++..-  ++
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            7889999999  55666899999999987          56788877664432     334568999999976643  44


Q ss_pred             cccc
Q 045370          222 KLKK  225 (350)
Q Consensus       222 ~~~~  225 (350)
                      .+.+
T Consensus       413 ~~~~  416 (595)
T 1fwx_A          413 FLNV  416 (595)
T ss_dssp             SCCC
T ss_pred             cccC
Confidence            4433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.65  E-value=2.8e-06  Score=79.59  Aligned_cols=129  Identities=10%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCC----------------------------------------ceeEEEEcCCC
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQ----------------------------------------AVTAIAFHPGE  118 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----------------------------------------~v~~~~~~~~~  118 (350)
                      .++.++.+|.+.++|..+|+.+.......                                        .-..++|+|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            68899999999999999999875433211                                        01126888888


Q ss_pred             cEEEEEcc---------------------------------------------CCeEEEEeCCcccccccccccccccee
Q 045370          119 QLLFAGSI---------------------------------------------DGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus       119 ~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      .++++.+.                                             +|.|..||+.+++....          
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~----------  470 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWE----------  470 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEE----------
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeE----------
Confidence            88877643                                             36677888876554322          


Q ss_pred             eeccCCceEEEEec-CCe-EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeeec
Q 045370          154 LKGHNGSITALAFS-ASH-LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       154 ~~~~~~~i~~~~~~-~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~~  218 (350)
                      +..+. ++..-.+. ..+ ++.|+.||.|+.||.++|+.+.++....+ ...-+.|..+|+ ++++.++
T Consensus       471 ~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          471 VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            22221 12212222 334 88899999999999999999999874332 234567888886 5554444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.65  E-value=2.1e-06  Score=77.14  Aligned_cols=224  Identities=11%  Similarity=0.003  Sum_probs=137.2

Q ss_pred             CCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEee-CCCcEEE
Q 045370            5 DDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTIS-GGTTFFV   81 (350)
Q Consensus         5 ~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~~l~   81 (350)
                      +||++|+.... ++.|.+.|+.+                           .+....+ ......+..+++.. +++.+++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t---------------------------~~~~~ii~ip~g~~phg~~~~~~p~~~~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDV---------------------------MKCDAILEIPNAKGIHGLRPQKWPRSNYVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTT---------------------------TEEEEEEECSSCCSEEEEEECCSSBCSEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCC---------------------------ceEeeEEeCCCCCCCcceeeeecCCCcEEE
Confidence            37887776665 55799999883                           3333322 12234466777654 5677776


Q ss_pred             EEe------------------CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC---------------
Q 045370           82 SSS------------------LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG---------------  128 (350)
Q Consensus        82 s~~------------------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------  128 (350)
                      .++                  .++.+.+.|..+.+....+...+....++++|+|+++++.+.+.               
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence            663                  35679999999999988887656778899999999999988653               


Q ss_pred             eEEEEeCCccccc----------cccccc-----ccc-ceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCce
Q 045370          129 RIFVSPLKFLLLE----------DHFIVG-----EDQ-HSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRV  189 (350)
Q Consensus       129 ~i~i~d~~~~~~~----------~~~~~~-----~~~-~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~  189 (350)
                      .|.+.|.......          ....+.     ... ...+.. .....++.++|+|   ++++..+.+|.++|+.+.+
T Consensus       232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence            3555554322100          000000     011 112211 2345678999999   6666678899999999753


Q ss_pred             ------------EEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCCc-------------cccC----------
Q 045370          190 ------------SIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS-------------LEKY----------  234 (350)
Q Consensus       190 ------------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~----------  234 (350)
                                  .+.++.. ......++|+|+| .+.+...-+..+..|++..             ..+.          
T Consensus       311 ~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          311 AVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             HHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             cccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence                        4555543 3456889999999 6665554332222232111             1111          


Q ss_pred             -CCCccccccceEEeeccccCCCCc
Q 045370          235 -PQLNSLSMEMVILLQSCFFNKDDQ  258 (350)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~  258 (350)
                       ......+.+++.++....+++|.+
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             eccceEeCCCCCEEEEcCCCCcccc
Confidence             122345677888888888887776

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.62  E-value=4.1e-06  Score=78.81  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             CeecCCCCEEEEEeCCCc-------------EEEEeCccccccccccccccccccccEEEeeccccccceeeecc-ccCC
Q 045370            1 MVFSDDGFLLISGSDDGM-------------ICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-HKSS   66 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~   66 (350)
                      ++|+ ||+.|+.++.+..             |++|++.+...                       ....+..... |...
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----------------------~~~~v~~~~~~~~~~  235 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----------------------DDRLVFGAIPAQHHR  235 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-----------------------GCEEEESCSGGGCCS
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-----------------------cceEEEecCCCCCeE
Confidence            5799 9999998888743             88888763110                       0112222233 4455


Q ss_pred             ceEEEEeeCCCcEEE-EEeC---CCcEEEEeCCCC--ceEEEEecCCceeEEEEcCCCcEEE-EEccC---CeEEEEeCC
Q 045370           67 VTGLLTISGGTTFFV-SSSL---DATCKVWDLGSG--ILIQTQVYPQAVTAIAFHPGEQLLF-AGSID---GRIFVSPLK  136 (350)
Q Consensus        67 v~~~~~~~~~~~~l~-s~~~---d~~v~vwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d---g~i~i~d~~  136 (350)
                      ..++.|++ ++++++ +.+.   +..|.++|+.++  .......+....... |++++..|+ ....+   +.|..+|+.
T Consensus       236 ~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~  313 (693)
T 3iuj_A          236 YVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA  313 (693)
T ss_dssp             EEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             EEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            67788865 566554 4332   257999999876  334434444444444 566666554 44333   689999988


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-CCC--cEEEEECCCceEEEEec-cCCCceeEEEEEccC
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-EDK--TVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQS  210 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~dg--~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~  210 (350)
                      .+...        ....+..|...+.  .|++++  |+... .++  .|++||+..+. ...+. ...+.+..+.++|++
T Consensus       314 ~~~~~--------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~  382 (693)
T 3iuj_A          314 NPGPA--------HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDD  382 (693)
T ss_dssp             SCCGG--------GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTC
T ss_pred             CCCcc--------ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCC
Confidence            64321        1123444554444  666665  54444 454  68999988554 44443 344567777888888


Q ss_pred             CeEEeee
Q 045370          211 SLLSEVS  217 (350)
Q Consensus       211 ~~l~~~~  217 (350)
                      ..++...
T Consensus       383 ~~l~~~~  389 (693)
T 3iuj_A          383 PALYFGF  389 (693)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEe
Confidence            7655443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.59  E-value=2.2e-06  Score=80.17  Aligned_cols=126  Identities=10%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCC------------ce------------------------eEEEEcCCCcEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ------------AV------------------------TAIAFHPGEQLL  121 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------------~v------------------------~~~~~~~~~~~l  121 (350)
                      ..++.++.+|.|.++|..+|+.+.......            ++                        ..++|+|+..++
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            678999999999999999999887754221            01                        156889988888


Q ss_pred             EEEccC-------------------------------------------CeEEEEeCCccccccccccccccceeeeccC
Q 045370          122 FAGSID-------------------------------------------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus       122 ~~~~~d-------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++...+                                           |.|..||+.+++.....          . +.
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~----------~-~~  476 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV----------E-HV  476 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE----------E-ES
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec----------C-CC
Confidence            876432                                           67888888866543321          1 11


Q ss_pred             CceEEEEecCC-e-EEEEeCCCcEEEEECCCceEEEEeccCC-CceeEEEEEccCCeEE
Q 045370          159 GSITALAFSAS-H-LISASEDKTVCLWDVTRRVSIRRFNHKK-GVVTNLVVIRQSSLLS  214 (350)
Q Consensus       159 ~~i~~~~~~~~-~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~  214 (350)
                      .++....+... + ++.++.||.+++||.++++.+.++.... ....-+.|.++|+.++
T Consensus       477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            22223333333 3 7788999999999999999999987432 2334566788887444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.57  E-value=1.8e-06  Score=74.15  Aligned_cols=85  Identities=8%  Similarity=-0.011  Sum_probs=60.4

Q ss_pred             EEEcCCCcEEEEEcc-C--------CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEe-CCC
Q 045370          112 IAFHPGEQLLFAGSI-D--------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISAS-EDK  178 (350)
Q Consensus       112 ~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~-~dg  178 (350)
                      ++++|+++.++++.. +        +.+.++|+.+.+...          .+... .....++|+|++   +++.. .++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~----------~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~  337 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG----------PISNG-HDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE----------CCEEE-EEECEEEECCSSSCEEEEEETTTT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE----------EEECC-CCcceEEECCCCCEEEEEccCCCC
Confidence            679999988887643 2        356699998654332          33222 257889999998   56666 589


Q ss_pred             cEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          179 TVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       179 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                      .|.++|+.+++.+.++.... ....+++.+
T Consensus       338 ~VsVID~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          338 VLDIYDAASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred             eEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence            99999999999999998543 345666544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.56  E-value=2.7e-06  Score=73.07  Aligned_cols=82  Identities=16%  Similarity=-0.044  Sum_probs=59.7

Q ss_pred             cccceeeeccccCCceEEEEeeCCCcEEEEEe----------CCCcEEEEeCCCCceEEEEecC--------CceeEEEE
Q 045370           53 LRSLLHYSLEHKSSVTGLLTISGGTTFFVSSS----------LDATCKVWDLGSGILIQTQVYP--------QAVTAIAF  114 (350)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~v~~~~~  114 (350)
                      ....+..+.....+  .+.+++ ++.+++.+.          .++.|.+||+.+++.+..+...        .....+.+
T Consensus        55 t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence            45555555444445  788866 555555554          4789999999999999987643        34678999


Q ss_pred             cCCCcEEEEEcc--CCeEEE--EeCCc
Q 045370          115 HPGEQLLFAGSI--DGRIFV--SPLKF  137 (350)
Q Consensus       115 ~~~~~~l~~~~~--dg~i~i--~d~~~  137 (350)
                      +|||++++++..  +..+.+  +|..+
T Consensus       132 SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          132 CASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             cCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            999999998864  467888  88854

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.53  E-value=5.3e-06  Score=72.52  Aligned_cols=170  Identities=12%  Similarity=0.043  Sum_probs=108.0

Q ss_pred             CCCCEEEEEeC-C----CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            5 DDGFLLISGSD-D----GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         5 ~dg~~l~sg~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      +++++++.... +    +.|.++|..                           ....+..+..-..+  .+++++ ++++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~---------------------------t~~vv~~I~vG~~P--gia~Sp-Dgk~  131 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGS---------------------------TGRILGMTDGGFLP--HPVAAE-DGSF  131 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETT---------------------------TTEEEEEEEECSSC--EEEECT-TSSC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECC---------------------------CCEEEEEEECCCCC--ceEECC-CCCE
Confidence            56776665554 2    699999998                           35555555444444  788866 5555


Q ss_pred             EEEEe----------CCCcEEEEeCCCCceEEEEecC--------CceeEEEEcCCCcEEEEEcc--CCeEEEEeCCccc
Q 045370           80 FVSSS----------LDATCKVWDLGSGILIQTQVYP--------QAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKFLL  139 (350)
Q Consensus        80 l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~  139 (350)
                      ++.+.          .++.|.++|..+++.+..+...        .....+.|+|+|++++++..  ++.|.++|+.+.+
T Consensus       132 lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          132 FAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence            55443          4678999999999998887543        34678999999999999874  5789999999765


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEE----eccCCCce-eEEEEEccCC
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRR----FNHKKGVV-TNLVVIRQSS  211 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~~l~~~~~~~  211 (350)
                      ...          .+.-..    +....|++   +++.+.||.+.+.+..+++....    +.....++ ..+.|.+++.
T Consensus       212 vv~----------~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          212 FDR----------MLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEE----------EEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEE----------EEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            433          222111    12334443   67777888888888866655432    22111221 2345677766


Q ss_pred             eEEeeec
Q 045370          212 LLSEVSN  218 (350)
Q Consensus       212 ~l~~~~~  218 (350)
                      .++..+.
T Consensus       278 ~~~~~s~  284 (426)
T 3c75_H          278 RLVWPTY  284 (426)
T ss_dssp             EEEEEBT
T ss_pred             EEEEEeC
Confidence            5443333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.52  E-value=6e-05  Score=61.80  Aligned_cols=145  Identities=13%  Similarity=-0.004  Sum_probs=93.2

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-CCceeEEEEcCCCcEEEE-EccCCeEEEEeCCcccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  142 (350)
                      ..+.++++.+.++.++++-..++.|..+++..+........ ......+++++++..++. -...+.|.++++.....  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            45678888776667777777788999999987654433332 246789999997655554 45568999998763211  


Q ss_pred             ccccccccceeeeccCCceEEEEecCC-e-EEEEeC---CCcEEEEECCCceEEEEe-ccCCCceeEEEEEccCCeEEee
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSAS-H-LISASE---DKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-l~s~~~---dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                              .............++++|+ + |+.+..   .+.|..+++.... ...+ .........++++|++..|+.+
T Consensus       114 --------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          114 --------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             --------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             --------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence                    0011112245789999995 4 555543   3688888876432 2222 1223457899999998777666


Q ss_pred             ecCc
Q 045370          217 SNCQ  220 (350)
Q Consensus       217 ~~~~  220 (350)
                      ....
T Consensus       185 d~~~  188 (267)
T 1npe_A          185 DAGT  188 (267)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            6543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.52  E-value=1.7e-05  Score=68.90  Aligned_cols=187  Identities=11%  Similarity=0.024  Sum_probs=113.5

Q ss_pred             CCCCEEEE-EeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec------c-ccCCceEEEEeeCC
Q 045370            5 DDGFLLIS-GSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL------E-HKSSVTGLLTISGG   76 (350)
Q Consensus         5 ~dg~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~   76 (350)
                      +++++|+. |..++.|.|+|+.+....                       ......+.      . .......+...+ +
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----------------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-d  148 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----------------------PKIIKVIEPEEVKKVSGYSRLHTVHCGP-D  148 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-----------------------CEEEEEECHHHHHHHHCEEEEEEEEECS-S
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-----------------------ceeeeeechhhcccccCCCcccceeECC-C
Confidence            77877655 556899999998631110                       01111110      0 011233444434 5


Q ss_pred             CcEEEEEeCC------CcEEEEeCCCCceEEEEecC----CceeEEEEcCCCcEEEEEc-------------------cC
Q 045370           77 TTFFVSSSLD------ATCKVWDLGSGILIQTQVYP----QAVTAIAFHPGEQLLFAGS-------------------ID  127 (350)
Q Consensus        77 ~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------------------~d  127 (350)
                      + +++++..+      +.|.+.|..+++++..+...    .-...+-|+|+++.+++..                   .+
T Consensus       149 G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~  227 (462)
T 2ece_A          149 A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG  227 (462)
T ss_dssp             C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred             e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence            5 66666555      78999999999999887532    2244688899999888884                   36


Q ss_pred             CeEEEEeCCccccccccccccccceeeec--cCCceEEEEe--cCCe---EEEEe-----CCCcEEEEECCCceE--EEE
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKG--HNGSITALAF--SASH---LISAS-----EDKTVCLWDVTRRVS--IRR  193 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~---l~s~~-----~dg~v~iwd~~~~~~--~~~  193 (350)
                      ..|.+||+.+.+...          .+..  .......+.|  +|++   ++++-     .+++|.+|....+..  ...
T Consensus       228 d~V~v~D~~~~k~~~----------tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          228 NRIHFWDLRKRKRIH----------SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             CEEEEEETTTTEEEE----------EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEECCCCcEee----------EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence            899999998643322          2221  1123444545  9988   44444     567888776654431  111


Q ss_pred             e--ccC----------------CCceeEEEEEccCCeEEeeecCccccccc
Q 045370          194 F--NHK----------------KGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       194 ~--~~~----------------~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      +  ...                ......+.++|||++|.++......+.+.
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf  348 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY  348 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            1  110                23578899999999999887764444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.50  E-value=5.8e-06  Score=69.96  Aligned_cols=140  Identities=10%  Similarity=0.010  Sum_probs=89.5

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ...+.++...+ ++. +..++  +.|..+| .+++...... ....+.++..++++. +++++.++.+..+|... ... 
T Consensus       176 ~~~~~~~~~d~-~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~-  247 (330)
T 3hxj_A          176 DAITSAASIGK-DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEK-  247 (330)
T ss_dssp             SCCCSCCEECT-TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEE-
T ss_pred             CCceeeeEEcC-CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEe-
Confidence            34455555433 444 44444  7899999 6777666554 335678888887765 55566678888887432 111 


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                               ..+......+..+...+++ |..++.+|.|..+|. +++.+..+......+.++...+++.+.+ ++.++.
T Consensus       248 ---------~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~  316 (330)
T 3hxj_A          248 ---------WRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGK  316 (330)
T ss_dssp             ---------EEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSC
T ss_pred             ---------EEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCe
Confidence                     1222222333345566666 888999999999996 6777777765556677888888888777 555543


Q ss_pred             c
Q 045370          222 K  222 (350)
Q Consensus       222 ~  222 (350)
                      +
T Consensus       317 ~  317 (330)
T 3hxj_A          317 F  317 (330)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.43  E-value=2e-05  Score=66.71  Aligned_cols=186  Identities=10%  Similarity=-0.036  Sum_probs=106.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccc--------ccceeeeccccCCceEEEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSL--------RSLLHYSLEHKSSVTGLLT   72 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~v~~~~~   72 (350)
                      ++|+++|++++++..++.|..||.......                .+.....        .............+.++++
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV----------------DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEE----------------EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceE----------------EEecccccccccccccccchhccccCCCCceEEE
Confidence            468889987888888999999987621000                0000000        0000000011235678887


Q ss_pred             eeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcC-CCcEEEEEcc-----------------CCe
Q 045370           73 ISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHP-GEQLLFAGSI-----------------DGR  129 (350)
Q Consensus        73 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~  129 (350)
                      .+.++. |+.+...+.|..+|..++.......     .......+++++ +|+..++-..                 ++.
T Consensus        88 ~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           88 NLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             ETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             cCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence            653555 4444444558888887654322211     113467899999 8876665432                 367


Q ss_pred             EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEE-eCCCcEEEEECCCc-----eEEEEeccCCCce
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA-SEDKTVCLWDVTRR-----VSIRRFNHKKGVV  201 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~-~~dg~v~iwd~~~~-----~~~~~~~~~~~~v  201 (350)
                      |..||...+...           .+.......+.++++|++  |+.+ ..++.|.+|++...     +....   ..+ .
T Consensus       167 v~~~d~~~~~~~-----------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P  231 (322)
T 2fp8_A          167 LIKYDPSTKETT-----------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-P  231 (322)
T ss_dssp             EEEEETTTTEEE-----------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-E
T ss_pred             EEEEeCCCCEEE-----------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-C
Confidence            888887543221           111112345678999987  4444 55689999998742     22222   223 6


Q ss_pred             eEEEEEccCCeEEeeec
Q 045370          202 TNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~  218 (350)
                      ..+++.++|.+.++...
T Consensus       232 ~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEEEECTTSCEEEEEEE
T ss_pred             CCeEECCCCCEEEEecC
Confidence            88999999987775543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.39  E-value=1.5e-05  Score=67.39  Aligned_cols=142  Identities=13%  Similarity=0.004  Sum_probs=91.2

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ...+.++...+ ++. +..++.++.|..+|.. ++....... ...+.++.+++++..+ .++  +.|..+| .++... 
T Consensus       136 ~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~-  207 (330)
T 3hxj_A          136 KAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEK-  207 (330)
T ss_dssp             SCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEE-
T ss_pred             CceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEE-
Confidence            33444554433 444 6677888999999999 777666553 3456777777777654 444  7889998 533221 


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                               .........+.++...+++ +..++.++.|..+|. ++..+..+......+.++.+.+++.+.+ ++.++.
T Consensus       208 ---------~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg  276 (330)
T 3hxj_A          208 ---------WNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH  276 (330)
T ss_dssp             ---------EEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE
T ss_pred             ---------EEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC
Confidence                     1222333567788888887 888888889999985 5666666664444455666766776665 555544


Q ss_pred             ccc
Q 045370          222 KLK  224 (350)
Q Consensus       222 ~~~  224 (350)
                      +..
T Consensus       277 l~~  279 (330)
T 3hxj_A          277 LYA  279 (330)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.35  E-value=0.00015  Score=61.26  Aligned_cols=147  Identities=7%  Similarity=-0.097  Sum_probs=88.0

Q ss_pred             CceEEEEeeCCCcEEEEEeC-----------------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccC
Q 045370           66 SVTGLLTISGGTTFFVSSSL-----------------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SID  127 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  127 (350)
                      ....+++.+.++.++++-..                 ++.|..||..+++.......-.....++++|+++.|+++ +.+
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC
Confidence            35667775424555554322                 367888898777654443333456789999999876665 556


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeC-----------CCcEEEEECCCceEEEEec
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASE-----------DKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~-----------dg~v~iwd~~~~~~~~~~~  195 (350)
                      +.|..|++.......        ...+....+ ...+++.+++ |..+..           .+.|..+|.. ++.+..+.
T Consensus       207 ~~I~~~~~~~~~~~~--------~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGT--------AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             TEEEEEESSSTTTTC--------EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred             CeEEEEECCCCcCCc--------cceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE
Confidence            899999987421110        011111223 7889999998 544443           3678888874 77777665


Q ss_pred             cC----CCceeEEEEEccCCeEEeeecCcccc
Q 045370          196 HK----KGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       196 ~~----~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ..    ...++++++ .++.++++.....++.
T Consensus       277 ~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          277 LPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             CCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             CCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence            33    235677766 4565555443444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.29  E-value=0.00036  Score=59.61  Aligned_cols=150  Identities=13%  Similarity=-0.016  Sum_probs=88.5

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEE-ccC-CeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAG-SID-GRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d-g~i~i~d~~~~~~~  141 (350)
                      ....++++.+.++.++++-...+.|.+.++.......... .-.....++++|.+..|+.. ... +.|..+++....  
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--  193 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--  193 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence            4557788876667777777777899999987554333332 23457899999966555444 444 788888876311  


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                              ........-...+.++++|++   +++-...+.|..+|+........+........++++. .+.++.+-..
T Consensus       194 --------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          194 --------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             --------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             --------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence                    111111223467899999755   4444456789999987533222233234456778773 3433333333


Q ss_pred             Ccccccc
Q 045370          219 CQRKLKK  225 (350)
Q Consensus       219 ~~~~~~~  225 (350)
                      ..++..+
T Consensus       265 ~~~V~~~  271 (349)
T 3v64_C          265 TKSINSA  271 (349)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            3444433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.28  E-value=5.8e-05  Score=65.25  Aligned_cols=133  Identities=8%  Similarity=-0.001  Sum_probs=85.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ..++.++.++.+..+|..+++.+....... ...+..  ++..+++++.++.+..+|..+++.......         ..
T Consensus       240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---------~~  307 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---------LL  307 (376)
T ss_dssp             TEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---------TT
T ss_pred             CEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---------cC
Confidence            457777889999999999999887665433 334444  467788888899999999987654321110         11


Q ss_pred             CCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          158 NGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       158 ~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ...+.......+.++.++.+|.|+.+|..+++.+.........+.+.....++ .|+.++.++.+.
T Consensus       308 ~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~-~l~v~~~~G~l~  372 (376)
T 3q7m_A          308 HRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG-KLLIQAKDGTVY  372 (376)
T ss_dssp             TSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT-EEEEEBTTSCEE
T ss_pred             CCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC-EEEEEeCCCEEE
Confidence            11222233334448889999999999999999988876533433332222344 444466555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.00026  Score=61.49  Aligned_cols=150  Identities=13%  Similarity=-0.017  Sum_probs=88.4

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-cC-CeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-ID-GRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~  141 (350)
                      .....+++.+.++.++++-...+.|.+.++........+. .-.....++++|.+..|+.+. .. +.|..+++....  
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--  236 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--  236 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--
Confidence            3456777766666777777777889999987554333333 225678999998766555544 34 678888776211  


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                              ........-...+.|+++|++   +++-+..+.|..+|+........+.........+++ ..+.++.+...
T Consensus       237 --------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~  307 (386)
T 3v65_B          237 --------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH  307 (386)
T ss_dssp             --------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred             --------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCC
Confidence                    111122233457899999755   444456678999998753322223323445677888 33444443333


Q ss_pred             Ccccccc
Q 045370          219 CQRKLKK  225 (350)
Q Consensus       219 ~~~~~~~  225 (350)
                      ..++..+
T Consensus       308 ~~~V~~~  314 (386)
T 3v65_B          308 TKSINSA  314 (386)
T ss_dssp             TTEEEEE
T ss_pred             CCeEEEE
Confidence            3444433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00041  Score=56.04  Aligned_cols=192  Identities=13%  Similarity=0.120  Sum_probs=112.6

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~   78 (350)
                      |+|+|++..| ++...++.|...|..                            +.....+. .-....-+|++.. ++.
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~----------------------------g~v~~~i~l~g~~D~EGIa~~~-~g~   82 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN----------------------------GDLIRTIPLDFVKDLETIEYIG-DNQ   82 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT----------------------------CCEEEEEECSSCSSEEEEEECS-TTE
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC----------------------------CCEEEEEecCCCCChHHeEEeC-CCE
Confidence            4788876644 456677888887776                            22333221 2224566777764 556


Q ss_pred             EEEEEeCCCcEEEEeCCCCce---EEEEe-------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc-cccc
Q 045370           79 FFVSSSLDATCKVWDLGSGIL---IQTQV-------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH-FIVG  147 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~---~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~  147 (350)
                      ++++.-.++.+.++++.....   +....       .......++|+|.++.|+++.......+|.+. +..... ....
T Consensus        83 ~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~~~~~l~i~  161 (255)
T 3qqz_A           83 FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLLSSNELHIS  161 (255)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STTCSSCCEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccccCCceeee
Confidence            666665677888888765442   22222       12346899999999888877766555555544 110000 0000


Q ss_pred             cccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCC---------CceeEEEEEccCCeEEe
Q 045370          148 EDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKK---------GVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~~  215 (350)
                      ......-..+...+.+++++|..   ++.......|.++|.. ++.+..+.-..         ...-.|+|.++|++.+ 
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-  239 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-  239 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-
Confidence            00000001123457889999876   6666678889999976 55655553221         2568899999998666 


Q ss_pred             eecCccccc
Q 045370          216 VSNCQRKLK  224 (350)
Q Consensus       216 ~~~~~~~~~  224 (350)
                      .+.....+.
T Consensus       240 vsE~n~~y~  248 (255)
T 3qqz_A          240 VSEPNRFYR  248 (255)
T ss_dssp             EETTTEEEE
T ss_pred             EcCCceEEE
Confidence            465554443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.22  E-value=0.00015  Score=62.58  Aligned_cols=198  Identities=12%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccc---cc-----------cccccEEEeeccccccceeeeccccCCc----
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHH---SD-----------QLDQRLIEMELRSLRSLLHYSLEHKSSV----   67 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~h~~~v----   67 (350)
                      ++..++.++.++.|..+|..++..........   ..           ..++.++.++... +......... .++    
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~-~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEAD-GAVKWTVNLD-MPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTT-CCEEEEEECC-C-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCC-CcEEEEEeCC-CCceeec
Confidence            46678888899999999988654332211110   00           1122333333222 1211111111 111    


Q ss_pred             --eEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCce-----eE---EEEcC--CCcEEEEEccCCeEEEEeC
Q 045370           68 --TGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAV-----TA---IAFHP--GEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        68 --~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v-----~~---~~~~~--~~~~l~~~~~dg~i~i~d~  135 (350)
                        ..... .  +..++.++.++.|..+|..+|+.+.......+.     ..   +...|  .+..+++++.++.+..+|.
T Consensus       180 ~~~~~~~-~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          180 GESAPTT-A--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             CCCCCEE-E--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             CCCCcEE-E--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence              11111 1  235777888999999999999988776533210     00   11111  3567788888999999999


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEecc-CCCceeEEEEEccCCeEE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~  214 (350)
                      .+++.....            .......+....+.++.++.++.|..+|..+++.+..... ....+......  +..|+
T Consensus       257 ~tG~~~w~~------------~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~  322 (376)
T 3q7m_A          257 RSGQIMWKR------------ELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLV  322 (376)
T ss_dssp             TTCCEEEEE------------CCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEE
T ss_pred             CCCcEEeec------------cCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEE
Confidence            876543211            1123445555545588888899999999999998887752 22233333332  34455


Q ss_pred             eeecCccc
Q 045370          215 EVSNCQRK  222 (350)
Q Consensus       215 ~~~~~~~~  222 (350)
                      .++.++.+
T Consensus       323 v~~~~g~l  330 (376)
T 3q7m_A          323 VGDSEGYL  330 (376)
T ss_dssp             EECTTSEE
T ss_pred             EEeCCCeE
Confidence            45555433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.21  E-value=0.00012  Score=67.04  Aligned_cols=131  Identities=14%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCce----------------------------------------------eE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAV----------------------------------------------TA  111 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v----------------------------------------------~~  111 (350)
                      ..++.++.+|.+.++|..+|+.+........+                                              ..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence            46888999999999999999988765432100                                              13


Q ss_pred             EEEcCCCcEEEEEc---------------------------------cCCeEEEEeCCccccccccccccccceeeeccC
Q 045370          112 IAFHPGEQLLFAGS---------------------------------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus       112 ~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++++|+...+++..                                 .+|.|..||+.+++........      .....
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~------~~~~~  490 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH------LPLWA  490 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES------SCCCS
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC------CCCcc
Confidence            45666555555433                                 2577888888766543221110      00011


Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCce-eEEEEEccCC-eEEeeec
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVV-TNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~-~l~~~~~  218 (350)
                      ..   +. ...+ ++.|+.||.++.||.++|+.+.++....+.. .-+.|..+|+ ++++.+.
T Consensus       491 g~---~~-tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          491 GV---LA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CC---EE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cc---eE-eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            11   11 2344 7779999999999999999999987533322 2367778886 5554444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.20  E-value=0.00012  Score=68.59  Aligned_cols=151  Identities=9%  Similarity=0.023  Sum_probs=93.3

Q ss_pred             EEEEeeCCCcEEEEEeCCC-------------------cEEEEeCCCCceEEEEecC----------CceeEEEEcCCC-
Q 045370           69 GLLTISGGTTFFVSSSLDA-------------------TCKVWDLGSGILIQTQVYP----------QAVTAIAFHPGE-  118 (350)
Q Consensus        69 ~~~~~~~~~~~l~s~~~d~-------------------~v~vwd~~~~~~~~~~~~~----------~~v~~~~~~~~~-  118 (350)
                      .+++.+ +...++.+..++                   +|..+|..+|+.+..+...          .....+....+| 
T Consensus       247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            455655 445666665553                   5999999999998876521          122333344477 


Q ss_pred             --cEEEEEccCCeEEEEeCCcccccccccccccc-ceeeeccCCce------------------------EEEEecCCe-
Q 045370          119 --QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQ-HSVLKGHNGSI------------------------TALAFSASH-  170 (350)
Q Consensus       119 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~i------------------------~~~~~~~~~-  170 (350)
                        ..++.++.+|.++++|..+++........... ...+.....++                        ..++++|+. 
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              68899999999999999988765332211100 00000000000                        146778765 


Q ss_pred             -EEEEeC-------------------------------------------CCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          171 -LISASE-------------------------------------------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       171 -l~s~~~-------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                       +++...                                           .|.|..||+.+++.+.++. +..++.+..+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcce
Confidence             444322                                           2789999999999999887 3445566667


Q ss_pred             EccCCeEEeeecCcc
Q 045370          207 IRQSSLLSEVSNCQR  221 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~  221 (350)
                      ...+.+++.++.++.
T Consensus       485 ~~~g~~v~~g~~dg~  499 (677)
T 1kb0_A          485 TTAGNVVFQGTADGR  499 (677)
T ss_dssp             EETTTEEEEECTTSE
T ss_pred             EeCCCEEEEECCCCc
Confidence            777777777765543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.19  E-value=0.002  Score=54.15  Aligned_cols=150  Identities=13%  Similarity=0.008  Sum_probs=88.2

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEcc-C-CeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSI-D-GRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~  141 (350)
                      ....++++.+.++.++++-...+.|.+.++.......... .-.....++++|.+..|+.+.. . +.|..+++....  
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--
Confidence            4567888866566766776778899999987554433333 3356789999996665555443 3 688888765211  


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCce--EEEEeccCCCceeEEEEEccCCeEEee
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRV--SIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                              ........-...+.++++|++  | ++-+..+.|..+|+....  .+............+++. .+.++.+.
T Consensus       155 --------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d  225 (316)
T 1ijq_A          155 --------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (316)
T ss_dssp             --------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             --------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence                    000111233567899999765  4 444466789999987422  222221123345677775 34444433


Q ss_pred             ecCcccccc
Q 045370          217 SNCQRKLKK  225 (350)
Q Consensus       217 ~~~~~~~~~  225 (350)
                      ....++..+
T Consensus       226 ~~~~~V~~~  234 (316)
T 1ijq_A          226 IINEAIFSA  234 (316)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCeEEEE
Confidence            333444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.19  E-value=0.00066  Score=56.79  Aligned_cols=191  Identities=12%  Similarity=0.038  Sum_probs=104.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+++|+++++-..++.|..||...                            ..... ......+.++++.+ ++.++
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g----------------------------~~~~~-~~~~~~p~gia~~~-dG~l~   86 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDG----------------------------NQQIH-ATVEGKVSGLAFTS-NGDLV   86 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC----------------------------CEEEE-EECSSEEEEEEECT-TSCEE
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCC----------------------------ceEEE-EeCCCCceeEEEcC-CCcEE
Confidence            47889998777776788999988762                            11111 11224577888865 55655


Q ss_pred             EEEeCCC--cEEEEeCCCCceEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc-eeee
Q 045370           81 VSSSLDA--TCKVWDLGSGILIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLK  155 (350)
Q Consensus        81 ~s~~~d~--~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~  155 (350)
                      ++.....  .|..+|..+++.......  ......++..+++..+++-..++.|+.+|...+...... ...... ....
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~-~~~~~~~~~~~  165 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL-EHPMLARSNSE  165 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE-ECGGGSCSSTT
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEE-ECCcccccccc
Confidence            5543322  466677777776544332  223445555555555555556889999997642110000 000000 0000


Q ss_pred             ccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceE--EEEeccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          156 GHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVS--IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      ..-...+.+  +|++   +++-...+.|..||+.. ++.  ...+.. ......++++++|++.++.....++..+
T Consensus       166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence            111234555  5554   45555678999999874 321  111111 1346788999999877655444444433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.17  E-value=0.00012  Score=58.96  Aligned_cols=139  Identities=14%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             cccCCc--eEEEEeeCCCcEEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCC
Q 045370           62 EHKSSV--TGLLTISGGTTFFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLK  136 (350)
Q Consensus        62 ~h~~~v--~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~  136 (350)
                      .|....  ..+.|.  ++.++.+.+.+|  .|+++|+.+++.+..+............+++..|+... .++.+.+||..
T Consensus        38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            555444  778775  457777877776  89999999999999987666665544444566666554 57999999998


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccC--CCc---eeEEEEEccCC
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHK--KGV---VTNLVVIRQSS  211 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~---v~~l~~~~~~~  211 (350)
                      +.+...          .+.... .-..+++....|+.+..++.|.++|..+.+.+.++...  ..+   +..+.|. +|+
T Consensus       116 t~~~~~----------ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          116 NLRQVR----------SFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             TCCEEE----------EEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             cCcEEE----------EEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            655443          222211 11233333222666666788999999999988887632  223   4457776 666


Q ss_pred             eEE
Q 045370          212 LLS  214 (350)
Q Consensus       212 ~l~  214 (350)
                      +.+
T Consensus       184 lya  186 (262)
T 3nol_A          184 IFA  186 (262)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.15  E-value=0.00099  Score=57.78  Aligned_cols=149  Identities=11%  Similarity=-0.075  Sum_probs=94.7

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCCcccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      ....+..++|.+.++.++++-...+.|..+++..+....... .......+++++.+. ++++-...+.|.+.++.... 
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-  192 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-  192 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-
Confidence            345578899987777777777778899999998765444333 223467889987554 45555567888888876321 


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe---EEEEeCC-CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED-KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                               ....+.........++++|.+   +++-... +.|..+++..................|+|+|++..|+.+
T Consensus       193 ---------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          193 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             ---------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred             ---------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence                     111222233567899999855   4443344 788888887533322222233457899999987777766


Q ss_pred             ecCcc
Q 045370          217 SNCQR  221 (350)
Q Consensus       217 ~~~~~  221 (350)
                      .....
T Consensus       264 D~~~~  268 (386)
T 3v65_B          264 DAKHH  268 (386)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            65543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.15  E-value=0.00038  Score=63.68  Aligned_cols=129  Identities=12%  Similarity=0.026  Sum_probs=82.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCC--------------ce--------------------------eEEEEcCC
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQ--------------AV--------------------------TAIAFHPG  117 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--------------~v--------------------------~~~~~~~~  117 (350)
                      ..++.++.+|.+.++|..+|+.+.......              ++                          ..++++|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            357788899999999999999887754322              11                          24578887


Q ss_pred             CcEEEEEcc-------------------------------------CCeEEEEeCCccccccccccccccceeeeccCCc
Q 045370          118 EQLLFAGSI-------------------------------------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus       118 ~~~l~~~~~-------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (350)
                      ..++++.+.                                     +|.|..||..+++.....          .. ...
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~----------~~-~~~  465 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK----------WE-KFA  465 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEE----------EE-SSC
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEe----------cC-CCC
Confidence            777776543                                     467888887765543221          11 111


Q ss_pred             eEEEE-ecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCc-eeEEEEEccCCeEEeee
Q 045370          161 ITALA-FSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGV-VTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       161 i~~~~-~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~  217 (350)
                      +.... ...++ ++.++.||.|+.||.++++.+.++...... -.-+.+..+|+.++...
T Consensus       466 ~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          466 AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            11111 12234 777899999999999999999988743221 22344667887555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.13  E-value=0.0002  Score=67.94  Aligned_cols=148  Identities=11%  Similarity=-0.003  Sum_probs=83.1

Q ss_pred             eec-CCCCEEEEEeC-CC----cEEEEeCccccccccccccccccccccEEEeecccccccee-eeccccCCceEEEEee
Q 045370            2 VFS-DDGFLLISGSD-DG----MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH-YSLEHKSSVTGLLTIS   74 (350)
Q Consensus         2 ~~s-~dg~~l~sg~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~   74 (350)
                      +|| |||++||.+.. +|    .|+++|+.++.                          ..+. .+.   ....++.|++
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~--------------------------~~l~~~~~---~~~~~~~Wsp  230 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS--------------------------QTIADKVS---GTNGEIVWGP  230 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTT--------------------------CCCCCCEE---EECSCCEECS
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCC--------------------------EeCCcccc---CceeeEEEec
Confidence            689 99998885543 23    59999998320                          1110 010   1134567866


Q ss_pred             CCCcEEEEEeCC-----CcEEEEeCCCCce--EEEEe--cCCceeEEEEcCCCcEEEEEcc---CCeEEEEeCCcccccc
Q 045370           75 GGTTFFVSSSLD-----ATCKVWDLGSGIL--IQTQV--YPQAVTAIAFHPGEQLLFAGSI---DGRIFVSPLKFLLLED  142 (350)
Q Consensus        75 ~~~~~l~s~~~d-----~~v~vwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  142 (350)
                       +++.|+....|     ..|.++++.++..  ...+.  .......+.|+|||++|+..+.   ...|+++|+..+..  
T Consensus       231 -Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--  307 (751)
T 2xe4_A          231 -DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--  307 (751)
T ss_dssp             -STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--
T ss_pred             -CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--
Confidence             55445444444     2588888887642  22222  2334667899999998876653   34688888875311  


Q ss_pred             cccccccc--ceeeeccCCceEEEEecCCe--EEEEeCC----CcEEEEECCC
Q 045370          143 HFIVGEDQ--HSVLKGHNGSITALAFSASH--LISASED----KTVCLWDVTR  187 (350)
Q Consensus       143 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~~--l~s~~~d----g~v~iwd~~~  187 (350)
                            ..  .............+.|+..+  ++.+..+    ..|..+|+.+
T Consensus       308 ------~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          308 ------HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ------CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             ------CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence                  01  11122234455666655444  3444333    3677778765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0017  Score=55.49  Aligned_cols=149  Identities=11%  Similarity=-0.073  Sum_probs=95.0

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCC-cEEEEEccCCeEEEEeCCcccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGE-QLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      ....+..++|.+.++.++++-...+.|..+++.......... .......+++++.+ +.+++-...+.|.+.++.... 
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-  149 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-  149 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-
Confidence            334578899987777777777778899999988765444333 22456789999754 455555667899999876321 


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe---EEEEeCC-CcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASED-KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                               ....+...-.....++++|.+   +++-... +.|..+++........+.........++++|++..|+.+
T Consensus       150 ---------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          150 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             ---------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred             ---------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE
Confidence                     111222233567899999854   4444444 788888887433222222233457899999988777766


Q ss_pred             ecCcc
Q 045370          217 SNCQR  221 (350)
Q Consensus       217 ~~~~~  221 (350)
                      .....
T Consensus       221 D~~~~  225 (349)
T 3v64_C          221 DAKHH  225 (349)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            65433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0027  Score=53.31  Aligned_cols=147  Identities=12%  Similarity=0.005  Sum_probs=90.5

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCC----CceEEEEe-cCCceeEEEEcCCCc-EEEEEccCCeEEEEeCC
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS----GILIQTQV-YPQAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~  136 (350)
                      ....+.+++|.+.++.++++-..++.|..+++..    ......+. .-.....+++++.+. .+++-...+.|.++++.
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            3456788999876667777777788999999876    22222232 224568899987554 44555667899999876


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe--EEEEeC-C-CcEEEEECCCceEEEEe-ccCCCceeEEEEEccCC
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-D-KTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-d-g~v~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~  211 (350)
                      ....          ...+.........++++|.+  |+.+.. . +.|..+++.... ...+ .........++++|++.
T Consensus       108 g~~~----------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~  176 (316)
T 1ijq_A          108 GVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSG  176 (316)
T ss_dssp             SSSE----------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTT
T ss_pred             CCce----------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCC
Confidence            3211          11122233567899999854  444443 3 688888886432 2222 22345678999999887


Q ss_pred             eEEeeecCc
Q 045370          212 LLSEVSNCQ  220 (350)
Q Consensus       212 ~l~~~~~~~  220 (350)
                      .|+.+....
T Consensus       177 ~lY~~D~~~  185 (316)
T 1ijq_A          177 RLYWVDSKL  185 (316)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            777666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.07  E-value=0.00017  Score=58.64  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=86.0

Q ss_pred             ceEEEEeeCCCcEEEEEeC--CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccc
Q 045370           67 VTGLLTISGGTTFFVSSSL--DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  143 (350)
                      ...+.|.+ ++.++++.+.  ++.|.+.|+.+++.+..+..........+..++..++.+ -.++.+.++|..+.+... 
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~-  100 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK-  100 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE-
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE-
Confidence            57888865 4555555543  579999999999999987644433333333345555544 467999999998654432 


Q ss_pred             cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCC--C---ceeEEEEEccCCeEEe
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKK--G---VVTNLVVIRQSSLLSE  215 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~l~~~~~~~~l~~  215 (350)
                               .+......-..  +++++  ++++..++.|.++|..+.+.+..+....  .   .+..+.|. ++.+.+.
T Consensus       101 ---------~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn  167 (266)
T 2iwa_A          101 ---------NFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN  167 (266)
T ss_dssp             ---------EEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             ---------EEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe
Confidence                     22211011122  44455  6666678899999999999888876321  1   35678888 6654443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=0.00023  Score=66.76  Aligned_cols=72  Identities=8%  Similarity=-0.003  Sum_probs=50.1

Q ss_pred             EEEEeeCCCcEEEEEeCCC-------------------cEEEEeCCCCceEEEEecC----------CceeEEEEcCCCc
Q 045370           69 GLLTISGGTTFFVSSSLDA-------------------TCKVWDLGSGILIQTQVYP----------QAVTAIAFHPGEQ  119 (350)
Q Consensus        69 ~~~~~~~~~~~l~s~~~d~-------------------~v~vwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~  119 (350)
                      .+++.+ ...+++.+..++                   .|..||..+|+.+..+...          .++.......+|.
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            455655 455677777665                   3999999999998876521          1122222233565


Q ss_pred             ---EEEEEccCCeEEEEeCCccccc
Q 045370          120 ---LLFAGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus       120 ---~l~~~~~dg~i~i~d~~~~~~~  141 (350)
                         .++.++.+|.++++|..+++..
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEe
Confidence               7889999999999999988764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.98  E-value=0.002  Score=53.88  Aligned_cols=132  Identities=13%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEE-Ee----------cCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCc-ccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQT-QV----------YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKF-LLLED  142 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~----------~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~~  142 (350)
                      ++..+++-..++.|.++|..++..... ..          .-.....+  ++++..|+++ ...+.|..|++.. +....
T Consensus       127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~  204 (306)
T 2p4o_A          127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE  204 (306)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred             CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence            444455554688888888876532111 10          01134455  7788766555 4568999999874 21110


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe-EEEE-eCCCcEEEEECCCceE--EEEeccCCCceeEEEEE---ccCCeEEe
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH-LISA-SEDKTVCLWDVTRRVS--IRRFNHKKGVVTNLVVI---RQSSLLSE  215 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~-~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~---~~~~~l~~  215 (350)
                              ...+. .......+++++++ ++++ ...+.|.++|.. ++.  +..+.......++++|.   |++..|+.
T Consensus       205 --------~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          205 --------PEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             --------CEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             --------cEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence                    01111 11345668889988 5444 456889999976 555  32344333568999999   88877776


Q ss_pred             eecC
Q 045370          216 VSNC  219 (350)
Q Consensus       216 ~~~~  219 (350)
                      ++..
T Consensus       275 t~~~  278 (306)
T 2p4o_A          275 VTNG  278 (306)
T ss_dssp             EECT
T ss_pred             ECCC
Confidence            6554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.98  E-value=0.0014  Score=52.30  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=90.0

Q ss_pred             cccC--CceEEEEeeCCCcEEEEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCC
Q 045370           62 EHKS--SVTGLLTISGGTTFFVSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLK  136 (350)
Q Consensus        62 ~h~~--~v~~~~~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~  136 (350)
                      .|..  ....+.|..  +.++.+.+.+|  .|+.+|+.+++.+.....+.........+.++.|+.. -.++.+.+||..
T Consensus        16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence            4543  355788753  56677777654  8999999999999988766665544444445555544 468999999998


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccC--C---CceeEEEEEccCC
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHK--K---GVVTNLVVIRQSS  211 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~~~  211 (350)
                      +.+...          .+.... .-..++.....|+.+..++.|.++|..+.+.+.++...  .   ..+..+.|. +|+
T Consensus        94 tl~~~~----------ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           94 TLTPRA----------RFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             TTEEEE----------EEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             cCcEEE----------EEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            765443          222211 12344443333666667889999999999988887632  1   234556655 555


Q ss_pred             eEE
Q 045370          212 LLS  214 (350)
Q Consensus       212 ~l~  214 (350)
                      +.+
T Consensus       162 lya  164 (243)
T 3mbr_X          162 LLA  164 (243)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.97  E-value=0.0033  Score=52.86  Aligned_cols=133  Identities=11%  Similarity=0.005  Sum_probs=81.4

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  141 (350)
                      ....++++.+.++.++++-...+.|.++++......... ..-.....++++|.+..|+.+.  ..+.|..+++....  
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--  156 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--  156 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence            456678886666777777777789999998754433333 2335678999999766665554  25788888765211  


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                              ........-...+.++++|++  | ++-+..+.|..+|+........+.........+++.
T Consensus       157 --------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          157 --------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             --------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred             --------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence                    111111223457899999854  4 444567889999987432221222233455677775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.97  E-value=0.00058  Score=55.01  Aligned_cols=138  Identities=13%  Similarity=0.138  Sum_probs=90.9

Q ss_pred             cccCC--ceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEE-EccCCeEEEEeCCcc
Q 045370           62 EHKSS--VTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFA-GSIDGRIFVSPLKFL  138 (350)
Q Consensus        62 ~h~~~--v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~  138 (350)
                      .|...  ...+.|.  ++.++.+.+.+|.|+++|+.+++.+..+ ...........++++.|+. .-.++.+.+||..+.
T Consensus        50 phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           50 PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            45433  3677774  4678888889999999999999998887 6555544333334554444 446799999999876


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEecc--CCC---ceeEEEEEccCCeE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNH--KKG---VVTNLVVIRQSSLL  213 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~l~~~~~~~~l  213 (350)
                      +...          .+... ..-..+++....|+.+..++.|+++|..+.+.+.++..  +..   .+..+.|. +|++.
T Consensus       127 ~~~~----------ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          127 QRER----------TTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEEE----------EEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             cEEE----------EEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            5443          22221 11234444433366666788999999999999888753  222   34567776 66655


Q ss_pred             E
Q 045370          214 S  214 (350)
Q Consensus       214 ~  214 (350)
                      +
T Consensus       195 a  195 (268)
T 3nok_A          195 A  195 (268)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.97  E-value=0.0046  Score=53.84  Aligned_cols=149  Identities=11%  Similarity=0.001  Sum_probs=93.9

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEe-cCCceeEEEEcCC-CcEEEEEccCCeEEEEeC
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG----ILIQTQV-YPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~  135 (350)
                      .....+..++|.+.++.++++-...+.|..+++...    ....... .......+++++. ++++++-...+.|.+.++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            445678899998767777777667788999998752    2222232 3346788999984 555555566789999887


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEEe--CCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS--EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      ....          ....+.........|+++|.+  |+.+.  ..+.|...++........+.........|+++|++.
T Consensus       189 ~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~  258 (400)
T 3p5b_L          189 KGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG  258 (400)
T ss_dssp             TTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred             CCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC
Confidence            6321          111222233457899999854  44443  247899888875433222333335678999999888


Q ss_pred             eEEeeecCc
Q 045370          212 LLSEVSNCQ  220 (350)
Q Consensus       212 ~l~~~~~~~  220 (350)
                      .|+.+....
T Consensus       259 ~lY~aD~~~  267 (400)
T 3p5b_L          259 RLYWVDSKL  267 (400)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            777666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.96  E-value=0.006  Score=53.11  Aligned_cols=134  Identities=14%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-c-CCeEEEEeCCccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-I-DGRIFVSPLKFLL  139 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~  139 (350)
                      .......+++...++.++++-...+.|.+.++........+. .-.....++++|.+..|+... . .+.|...++... 
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-  235 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-  235 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-
Confidence            345667888876567777777778899999988665444443 334578999999766665554 2 367888877621 


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--EEEE-eCCCcEEEEECCCceEEEEec--cCCCceeEEEE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA-SEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVV  206 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~-~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~  206 (350)
                               .........-...+.|++++++  |+.+ ...+.|..+|+........+.  .......++++
T Consensus       236 ---------~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          236 ---------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             ---------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred             ---------ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence                     1111222233567899999765  4444 456789999987533222222  12234456666

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00096  Score=62.30  Aligned_cols=129  Identities=11%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecCC-------------ce------------------------eEEEEcCCCcEE
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQVYPQ-------------AV------------------------TAIAFHPGEQLL  121 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------------~v------------------------~~~~~~~~~~~l  121 (350)
                      .++.++.+|.+.++|..+|+.+.......             ++                        ..++++|+...+
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~  395 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence            68899999999999999999885433211             00                        126777776666


Q ss_pred             EEEc------------------------------------cCCeEEEEeCCccccccccccccccceeeeccCCceE--E
Q 045370          122 FAGS------------------------------------IDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT--A  163 (350)
Q Consensus       122 ~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~  163 (350)
                      ++..                                    .+|.|..||+.+++.....          ..+ .+..  .
T Consensus       396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~----------~~~-~~~~~~~  464 (668)
T 1kv9_A          396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV----------PYP-THWNGGT  464 (668)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE----------EES-SSCCCCE
T ss_pred             EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc----------cCC-CCCcCce
Confidence            5421                                    2377888888766543221          111 1111  1


Q ss_pred             EEecCCeEEEEeCCCcEEEEECCCceEEEEeccCCCc-eeEEEEEccCC-eEEeeec
Q 045370          164 LAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGV-VTNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       164 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~-~l~~~~~  218 (350)
                      +....+.++.++.|+.|+.||.++++.+..+....+. -.-+.+..+|+ +++.++.
T Consensus       465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence            2222222888899999999999999999988744321 13345566776 5554443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.93  E-value=0.0019  Score=59.24  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeeec
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~~  218 (350)
                      ++.++.||.|+.||.++|+.+.++....+ ...-+.+..+|+ ++++.+.
T Consensus       487 vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          487 VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            77789999999999999999998864332 223356777886 4544443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.91  E-value=0.0041  Score=59.40  Aligned_cols=145  Identities=10%  Similarity=0.044  Sum_probs=98.0

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------cCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSP  134 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  134 (350)
                      ...|.++...+ ++. +..|+.++-|..||..++.......         ....|.++..+++++.|++|+.++-|..||
T Consensus       356 ~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            45688887654 444 6668888789999998876554321         135688999988888677788777899999


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc------CCCceeEEEEE
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH------KKGVVTNLVVI  207 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~l~~~  207 (350)
                      ..++.........      -..+...|.++...+++ |..|+. +-|.+||..+++.......      ....|.++...
T Consensus       434 ~~~~~~~~~~~~~------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          434 RNSGQVENFNQRN------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             TTTCCEEEECTTT------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred             CCCCcEEEeecCC------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence            8764432110000      00234579999998888 777777 4589999988765432211      23568899999


Q ss_pred             ccCCeEEeee
Q 045370          208 RQSSLLSEVS  217 (350)
Q Consensus       208 ~~~~~l~~~~  217 (350)
                      ++|.+.+++.
T Consensus       507 ~~g~lWigt~  516 (795)
T 4a2l_A          507 SHKRLWIGGE  516 (795)
T ss_dssp             TTCCEEEEES
T ss_pred             CCCCEEEEeC
Confidence            9998877554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.00075  Score=59.43  Aligned_cols=143  Identities=8%  Similarity=0.008  Sum_probs=88.5

Q ss_pred             CceEEEEee-CCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC-C----eEEEEeCCccc
Q 045370           66 SVTGLLTIS-GGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID-G----RIFVSPLKFLL  139 (350)
Q Consensus        66 ~v~~~~~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~  139 (350)
                      ....+++.| .++. |+.+...+.|+.+|+..+..............++|++++++|+++... +    .+.+++.. +.
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            457888865 2444 444444488999999887766555555668899999999977666542 2    23333322 21


Q ss_pred             cccccccccccceeeeccCCceEEEEecC-Ce-EE-EEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEe
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSA-SH-LI-SASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-l~-s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~  215 (350)
                      ...        ...+. .......++++| ++ |+ +-..++.|..+|..++....... ........++|+|++++|+.
T Consensus       216 ~~~--------~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          216 FKV--------ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             SCS--------EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             eee--------eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            110        01111 123456788999 66 44 44467899999998776522222 12234678999999996665


Q ss_pred             eecC
Q 045370          216 VSNC  219 (350)
Q Consensus       216 ~~~~  219 (350)
                      +...
T Consensus       287 ~d~~  290 (430)
T 3tc9_A          287 VVVN  290 (430)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            5544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.87  E-value=0.0045  Score=52.01  Aligned_cols=134  Identities=9%  Similarity=-0.048  Sum_probs=81.9

Q ss_pred             ccCCceEEEEeeCCCcEEEEEe-CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSS-LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLL  139 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~  139 (350)
                      .......+++.+.++.++++-. ..+.|...++.......... .-.....+++++++..|+.+ +..+.|..+|+....
T Consensus       120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            3455678888776665555542 35778888876433222222 22456899999976666555 456889999886311


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  206 (350)
                                ......+.......+++..++ +++-...+.|..+|..+++....+........+++.
T Consensus       200 ----------~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v  257 (318)
T 3sov_A          200 ----------RQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA  257 (318)
T ss_dssp             ----------CEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred             ----------eEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence                      111112233456777877777 666667788999999887766665533333445544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.82  E-value=0.0021  Score=53.53  Aligned_cols=166  Identities=7%  Similarity=-0.046  Sum_probs=103.0

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-Eec-------CCceeEEEE---cCCCcEEEEEc----
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVY-------PQAVTAIAF---HPGEQLLFAGS----  125 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~l~~~~----  125 (350)
                      .......-++.|...++.++++.-..++|..||...+..... +..       ...+..+.|   +|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            344455667789876777777776899999999986654443 221       013578999   68877777544    


Q ss_pred             ---------cCCeEEEEeCC---ccccccccccccc--cceeeec-cCCceEEEEecCCe--EEEEeCC-CcEEEEECCC
Q 045370          126 ---------IDGRIFVSPLK---FLLLEDHFIVGED--QHSVLKG-HNGSITALAFSASH--LISASED-KTVCLWDVTR  187 (350)
Q Consensus       126 ---------~dg~i~i~d~~---~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~--l~s~~~d-g~v~iwd~~~  187 (350)
                               .+..|..||+.   +++..........  ......+ -......++..++|  .++++.. +.|...+...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                     26789999988   5443221111000  0000001 11358899999998  7778877 8887777764


Q ss_pred             ceEEEEe-cc----CCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          188 RVSIRRF-NH----KKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       188 ~~~~~~~-~~----~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      .....-+ ..    .....+.++++|+|..|++....++++.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            4222111 11    122367999999999888777766655543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.81  E-value=0.0036  Score=57.45  Aligned_cols=110  Identities=14%  Similarity=0.089  Sum_probs=69.4

Q ss_pred             CCCcEEEEeCCCCceEEEEecCCce---------------------------------------eEEEEcCCCcEEEEEc
Q 045370           85 LDATCKVWDLGSGILIQTQVYPQAV---------------------------------------TAIAFHPGEQLLFAGS  125 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~  125 (350)
                      .++.|.-+|..+|+.+..+....+.                                       ..+++++....++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3899999999999998876543221                                       1356777778888877


Q ss_pred             cCC----------------eEEEEeCCccccccccccccccceeeeccCCceEEEEec-CCe-----EEEEeCCCcEEEE
Q 045370          126 IDG----------------RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS-ASH-----LISASEDKTVCLW  183 (350)
Q Consensus       126 ~dg----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-----l~s~~~dg~v~iw  183 (350)
                      .++                .|..+|..+++....+.......-.+.....++. +... .++     ++.++.+|.++++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            653                7889999877655332211110001111112222 2221 222     6678899999999


Q ss_pred             ECCCceEEEEec
Q 045370          184 DVTRRVSIRRFN  195 (350)
Q Consensus       184 d~~~~~~~~~~~  195 (350)
                      |..+|+.+....
T Consensus       339 D~~tG~~lw~~~  350 (599)
T 1w6s_A          339 DRTDGALVSANK  350 (599)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCCEeeccc
Confidence            999999987764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.79  E-value=0.0048  Score=49.78  Aligned_cols=161  Identities=16%  Similarity=0.115  Sum_probs=102.7

Q ss_pred             eeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           59 YSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      .+.+-...+..++|.+.++.++++...++.|...|.. ++.+..+...  .....|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3445557899999988666777778888999999998 8888877543  468899999888877776677889999876


Q ss_pred             cccccccccccccccee-eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCC---c---eEEEE--e--ccCCCceeE
Q 045370          137 FLLLEDHFIVGEDQHSV-LKGHNGSITALAFSASH--LISASEDKTVCLWDVTR---R---VSIRR--F--NHKKGVVTN  203 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~---~---~~~~~--~--~~~~~~v~~  203 (350)
                      .......  ........ ........-.++|+|.+  |+++.+.....||.+..   .   +.+..  +  ..+...+.+
T Consensus       100 ~~~~i~~--~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A          100 PNSEVKI--LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             TTCCEEE--EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             CCCeeee--eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            5332100  00000000 11234557899999987  77777655555555431   1   22111  0  113346789


Q ss_pred             EEEEccCCeEEeeecCccc
Q 045370          204 LVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~~~~  222 (350)
                      ++++|....+...+...+.
T Consensus       178 l~~dp~tg~lliLS~~s~~  196 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRA  196 (255)
T ss_dssp             EEEETTTTEEEEEETTTTE
T ss_pred             EEEcCCCCeEEEEECCCCe
Confidence            9999987655556655433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.0093  Score=56.53  Aligned_cols=145  Identities=13%  Similarity=0.001  Sum_probs=87.1

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-cC-CeEEEEeCCccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-ID-GRIFVSPLKFLL  139 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~  139 (350)
                      .......|++...++.++++-...+.|.+.++........+. .-.....|+++|.+.+|+.+. .+ +.|...++... 
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-  547 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-  547 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-
Confidence            345667888876666777777788899999998655444333 334688999999766555554 33 67888877621 


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--EEEE-eCCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeEE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA-SEDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~-~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~  214 (350)
                               .....+...-...+.|++++..  |+.+ ...+.|..+|+........+..  ......+|++.  +..|+
T Consensus       548 ---------~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lY  616 (791)
T 3m0c_C          548 ---------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVF  616 (791)
T ss_dssp             ---------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEE
T ss_pred             ---------ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEE
Confidence                     1111222233578889998654  4444 4567899999865433222222  12234455553  33455


Q ss_pred             eeecC
Q 045370          215 EVSNC  219 (350)
Q Consensus       215 ~~~~~  219 (350)
                      .+...
T Consensus       617 wtD~~  621 (791)
T 3m0c_C          617 WTDII  621 (791)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            44433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.76  E-value=0.0083  Score=57.29  Aligned_cols=146  Identities=8%  Similarity=0.046  Sum_probs=94.3

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--------cCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                      ...|.++...+ ++. +..|+.+ -|.+||..++.......        ....|.++..+++|. |..|+.++-|..|+.
T Consensus       262 ~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          262 SNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             CSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred             CCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence            35688887654 444 4455555 58999988776544321        124699999988776 556777777888887


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc--------CCCceeEEEE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH--------KKGVVTNLVV  206 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~l~~  206 (350)
                      .............    .-.-....|.++...+++ |..|+.++-|..||..+++...-...        ....|.+++.
T Consensus       338 ~~~~~~~~~~~~~----~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          338 IRNRFKNIRNIPY----KNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             GGGSSEEECCCTT----SSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             CcccceEEcCCCC----CCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            6433211000000    001124569999999988 88899888899999987765433211        2357899999


Q ss_pred             EccCC-eEEeeec
Q 045370          207 IRQSS-LLSEVSN  218 (350)
Q Consensus       207 ~~~~~-~l~~~~~  218 (350)
                      .+++. +.+ |+.
T Consensus       414 d~~g~~lWi-gt~  425 (795)
T 4a2l_A          414 DEKKSLVYI-GTH  425 (795)
T ss_dssp             ETTTTEEEE-EET
T ss_pred             cCCCCEEEE-EeC
Confidence            99998 555 544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.72  E-value=0.007  Score=53.24  Aligned_cols=151  Identities=10%  Similarity=0.028  Sum_probs=84.9

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-Eec--CCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCc--c
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVY--PQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKF--L  138 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~  138 (350)
                      .....+++.+.++.++++-..++.|..+|..++..... ...  ......++|+|++++|+.+ ...+.|+.++...  .
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            44556677665677666666778899999987776332 222  2223469999999965555 4568899987652  2


Q ss_pred             ccccccccccc---cce----eeeccCCceEEEEe---------cCCe-EEEE-eCCCcEEEEECCCceEEEEeccC---
Q 045370          139 LLEDHFIVGED---QHS----VLKGHNGSITALAF---------SASH-LISA-SEDKTVCLWDVTRRVSIRRFNHK---  197 (350)
Q Consensus       139 ~~~~~~~~~~~---~~~----~~~~~~~~i~~~~~---------~~~~-l~s~-~~dg~v~iwd~~~~~~~~~~~~~---  197 (350)
                      ...........   .-.    .....-.....+++         .+++ |+.+ ...+.|+.++. ++... ++.+.   
T Consensus       308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~  385 (433)
T 4hw6_A          308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNS  385 (433)
T ss_dssp             CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTT
T ss_pred             ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCC
Confidence            11100000000   000    00011234677888         6777 4444 45678999985 45433 33211   


Q ss_pred             ---------------CCceeEEEEE-ccCCeEEeeec
Q 045370          198 ---------------KGVVTNLVVI-RQSSLLSEVSN  218 (350)
Q Consensus       198 ---------------~~~v~~l~~~-~~~~~l~~~~~  218 (350)
                                     -.....|+++ +++.+++ +..
T Consensus       386 ~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV-aD~  421 (433)
T 4hw6_A          386 REWGYVDGELRSQALFNHPTSIAYDMKRKCFYI-GDC  421 (433)
T ss_dssp             CSSCCBCEETTTTCBCSSEEEEEEETTTTEEEE-EEG
T ss_pred             CccccCCCccccccEeCCCcEEEEECCCCEEEE-EeC
Confidence                           1236789999 5565555 443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.72  E-value=0.0041  Score=56.89  Aligned_cols=109  Identities=14%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             CCcEEEEeCCCCceEEEEecCCce---------------------------------------eEEEEcCCCcEEEEEcc
Q 045370           86 DATCKVWDLGSGILIQTQVYPQAV---------------------------------------TAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~  126 (350)
                      ++.|..+|..+|+.+..+....+.                                       ..+++++....++.++.
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            799999999999998876543221                                       23567777677777664


Q ss_pred             C----------------CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-----EEEEeCCCcEEEEEC
Q 045370          127 D----------------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-----LISASEDKTVCLWDV  185 (350)
Q Consensus       127 d----------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~  185 (350)
                      +                +.|..+|..+++..............+.....++. +...+++     ++.++.+|.++++|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                35889999877654322111000000001112222 2222233     667888999999999


Q ss_pred             CCceEEEEec
Q 045370          186 TRRVSIRRFN  195 (350)
Q Consensus       186 ~~~~~~~~~~  195 (350)
                      .+++.+..+.
T Consensus       334 ~tG~~~w~~~  343 (571)
T 2ad6_A          334 ENGNLIVAEK  343 (571)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEeeec
Confidence            9999887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.71  E-value=0.017  Score=48.67  Aligned_cols=188  Identities=13%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC---CCc---E
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG---GTT---F   79 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~---~   79 (350)
                      ...+++.....+-+.+||+.                            +..+..+..  +.++.+..-+.   ++.   +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~----------------------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dl   88 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD----------------------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDI   88 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT----------------------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCC----------------------------CcEEEEccC--CCcccEEEecccccCCceEeE
Confidence            34566666778889999997                            444444432  44555554431   111   2


Q ss_pred             -EEEEeC--CCcEEEEeC--CCCceEEEEe-------cC-CceeEEEE--cCC-Cc-EEEEEccCCeEEEEeCCcccccc
Q 045370           80 -FVSSSL--DATCKVWDL--GSGILIQTQV-------YP-QAVTAIAF--HPG-EQ-LLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        80 -l~s~~~--d~~v~vwd~--~~~~~~~~~~-------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                       +++.-.  +++|.+|++  .++. +..+.       .. ..+..+|+  +|. +. ++++...+|.+..|++....-. 
T Consensus        89 a~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-  166 (355)
T 3amr_A           89 AAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-  166 (355)
T ss_dssp             EEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-
T ss_pred             EEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-
Confidence             333333  578999976  3443 33331       11 55777888  664 43 6888888999999998531100 


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECC-----CceEEEEec-cC-CCceeEEEE--EccCC
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVT-----RRVSIRRFN-HK-KGVVTNLVV--IRQSS  211 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~-----~~~~~~~~~-~~-~~~v~~l~~--~~~~~  211 (350)
                        ....+.++.+... +.+-.+...+..  |+.+-++..|..+|.+     +++.+..+. ++ ...+..|++  .++++
T Consensus       167 --~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          167 --YISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             --CEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred             --cccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence              0123344455443 467777777754  9999998777777755     456666653 22 236788887  45666


Q ss_pred             -eEEeeecCccccccccC
Q 045370          212 -LLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       212 -~l~~~~~~~~~~~~~~~  228 (350)
                       +|++++.....+.+++.
T Consensus       244 gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          244 GYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEEEGGGTEEEEEES
T ss_pred             EEEEEEcCCCCEEEEEEC
Confidence             77767755544444433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.67  E-value=0.019  Score=54.38  Aligned_cols=148  Identities=11%  Similarity=-0.004  Sum_probs=92.7

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEe-cCCceeEEEEcCCCcEE-EEEccCCeEEEEeC
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG----ILIQTQV-YPQAVTAIAFHPGEQLL-FAGSIDGRIFVSPL  135 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~  135 (350)
                      .....+..++|.+.++.++++-...+.|..+++...    .....+. .-.....|++++.+..| ++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            345667788887766777777777788999998753    2222232 33457789999877544 45556789999988


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEEe-C-CCcEEEEECCCceEEEEeccCCCceeEEEEEccCC
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-E-DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      ....          ....+.........|+++|..  |+.+. . .+.|...++........+.........|++++.+.
T Consensus       501 dG~~----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~  570 (791)
T 3m0c_C          501 KGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG  570 (791)
T ss_dssp             TSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred             CCCe----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence            7321          111222333567899999864  54444 2 36788888875444333333345678899998777


Q ss_pred             eEEeeecC
Q 045370          212 LLSEVSNC  219 (350)
Q Consensus       212 ~l~~~~~~  219 (350)
                      .|+.+...
T Consensus       571 ~LYwaD~~  578 (791)
T 3m0c_C          571 RLYWVDSK  578 (791)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEeCC
Confidence            76666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.67  E-value=0.0043  Score=51.72  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             eecCCCCEEEEEe-CCCcEEEEeCccccccccccccccccccccEEEeecccccccee-eecc----c--cCCceEEEE-
Q 045370            2 VFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH-YSLE----H--KSSVTGLLT-   72 (350)
Q Consensus         2 ~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----h--~~~v~~~~~-   72 (350)
                      +|++....|..++ ..++|..||...                           ..... .+.+    .  ...+.++.| 
T Consensus        19 ~wd~~~g~~~vs~l~~g~V~~~~~~~---------------------------~~~~~~~~~~~s~~g~~~~~~sGl~~~   71 (334)
T 2p9w_A           19 IYDRTRQVFYQSNLYKGRIEVYNPKT---------------------------QSHFNVVIDGASSNGDGEQQMSGLSLL   71 (334)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTT---------------------------CCEEEECCTTTCCSSCCSEEEEEEEES
T ss_pred             cCcCCCCEEEEEeccCCEEEEEcCCC---------------------------CeEEEEecCCccccCCCcceeeEEEEe
Confidence            5777555555555 799999999862                           11111 1111    0  112467777 


Q ss_pred             --eeCCCcEEEEEe-------------CCCcEEEEeCC---CCceEEEEecC--------------CceeEEEEcCCCcE
Q 045370           73 --ISGGTTFFVSSS-------------LDATCKVWDLG---SGILIQTQVYP--------------QAVTAIAFHPGEQL  120 (350)
Q Consensus        73 --~~~~~~~l~s~~-------------~d~~v~vwd~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~  120 (350)
                        .+ ++.++++..             .+..|..+|+.   +++.+......              ..+..++.+++|+.
T Consensus        72 ~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna  150 (334)
T 2p9w_A           72 THDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS  150 (334)
T ss_dssp             SSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE
T ss_pred             ccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE
Confidence              35 456666433             26779999999   78776664421              24889999999999


Q ss_pred             EEEEccC-CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCc
Q 045370          121 LFAGSID-GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRR  188 (350)
Q Consensus       121 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~  188 (350)
                      .++++.. +.|..++........ +....    .........+.|+++|++  |++....|.|.-+|+.+.
T Consensus       151 YVt~s~~~~~I~rV~pdG~~~~~-~~~~~----~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          151 YVAFALGMPAIARVSADGKTVST-FAWES----GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEESSCEEEEECTTSCCEEE-EEECC----CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EEeCCCCCCeEEEEeCCCCEEee-eeecC----CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            9998888 888777765321110 00000    001122346789999998  666655999999998853

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=0.002  Score=56.70  Aligned_cols=147  Identities=11%  Similarity=0.078  Sum_probs=84.6

Q ss_pred             CeecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc-
Q 045370            1 MVFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT-   78 (350)
Q Consensus         1 i~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-   78 (350)
                      |+|+| ++..|+.+...+.|+.+|..                            ...+..+.........+++.+ ++. 
T Consensus       142 lavdp~~~g~Lyv~d~~~~I~~id~~----------------------------~~~v~~~~~~~~~P~~ia~d~-~G~~  192 (430)
T 3tc9_A          142 LSFDPKNHNHLYLVGEQHPTRLIDFE----------------------------KEYVSTVYSGLSKVRTICWTH-EADS  192 (430)
T ss_dssp             EEEETTEEEEEEEEEBTEEEEEEETT----------------------------TTEEEEEECCCSCEEEEEECT-TSSE
T ss_pred             EEECCCCCCeEEEEeCCCcEEEEECC----------------------------CCEEEEEecCCCCcceEEEeC-CCCE
Confidence            46776 34455555554778888776                            222222233445678888866 555 


Q ss_pred             EEEEEeCCC----cEEEEeCCCCceE--EEEecCCceeEEEEcC-CCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           79 FFVSSSLDA----TCKVWDLGSGILI--QTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        79 ~l~s~~~d~----~v~vwd~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ++++...++    .+...+. .+...  ..+........++++| ++.++++-..++.|..++........        +
T Consensus       193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--------~  263 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--------L  263 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--------E
T ss_pred             EEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------E
Confidence            444443222    2333343 33222  2333344567889999 66666666677899999987432210        0


Q ss_pred             eeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC
Q 045370          152 SVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT  186 (350)
Q Consensus       152 ~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~  186 (350)
                      ... ........++++|++   +++-...+.|..++..
T Consensus       264 ~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          264 FTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            011 112456789999998   4444567889998765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.60  E-value=0.0039  Score=58.24  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCcEEEEeCCCCceEEEEecC--Cc------------------------------eeEEEEcCCCcEEEEEccCCe----
Q 045370           86 DATCKVWDLGSGILIQTQVYP--QA------------------------------VTAIAFHPGEQLLFAGSIDGR----  129 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~--~~------------------------------v~~~~~~~~~~~l~~~~~dg~----  129 (350)
                      +|.|..+|..+|+.+..+...  .+                              ...++++|....++.++.++.    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999998876421  00                              124688888888888887763    


Q ss_pred             ---------------EEEEeCCccccccccccccccceeeeccCCceE--EEEecCC---eEEEEeCCCcEEEEECCCce
Q 045370          130 ---------------IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT--ALAFSAS---HLISASEDKTVCLWDVTRRV  189 (350)
Q Consensus       130 ---------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~---~l~s~~~dg~v~iwd~~~~~  189 (350)
                                     |..+|..+++..............+. ...+..  .+.+...   .++.++.+|.++++|..+|+
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                           89999988765543221100000000 012222  2333322   18888999999999999999


Q ss_pred             EEEEe
Q 045370          190 SIRRF  194 (350)
Q Consensus       190 ~~~~~  194 (350)
                      .+...
T Consensus       336 ~l~~~  340 (668)
T 1kv9_A          336 LISAE  340 (668)
T ss_dssp             EEEEE
T ss_pred             Eeccc
Confidence            88544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.58  E-value=0.00065  Score=63.72  Aligned_cols=112  Identities=13%  Similarity=0.008  Sum_probs=68.0

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEcc-C-CeEEEEeCCcccccc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSI-D-GRIFVSPLKFLLLED  142 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~  142 (350)
                      ....+++...++.++++-...+.|.++++........+. .......++++|.+.+|+.+.. . +.|..+++....   
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---  530 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---  530 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---
Confidence            345566655556666666667889999987654443333 2245678899997665555442 2 677777765211   


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR  187 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~  187 (350)
                             ....+...-...+.|+++|++   +++-+..+.|..+|+..
T Consensus       531 -------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          531 -------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             -------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             -------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence                   000111222456789999865   44445667899999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.56  E-value=0.028  Score=51.93  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=82.0

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEc--cCCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~  141 (350)
                      .....+++...+++++++-...+.|.+.++......... ..-.....++++|....|+...  ..+.|...++....  
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--  157 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--  157 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--
Confidence            456788887666777777777788999998755433333 2334578999999655555554  24677777765221  


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EE-EEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEc
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR  208 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~  208 (350)
                               ...+...-...+.|++++++  |+ +-...+.|..+|+..... ..+........++++..
T Consensus       158 ---------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          158 ---------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             ---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred             ---------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence                     11222234577899999864  44 444567899999875332 22322333455777754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.56  E-value=0.0037  Score=58.32  Aligned_cols=102  Identities=7%  Similarity=-0.018  Sum_probs=54.3

Q ss_pred             eEEEEcC-CCcEEEEEccCC-----------eEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEe
Q 045370          110 TAIAFHP-GEQLLFAGSIDG-----------RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS  175 (350)
Q Consensus       110 ~~~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~  175 (350)
                      .++.|.. +++.++.|+.++           .+.+||..+.......   ..   .+.. ...-.++...|++  ++.|+
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~---~mp~-~R~~~~~~~l~~g~i~v~GG  474 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---SN---GLYF-ARTFHTSVVLPDGSTFITGG  474 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC---TT---CCSS-CCBSCEEEECTTSCEEEECC
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc---cC---CCCC-CcccCCeEECCCCCEEEECC
Confidence            3444443 677777777532           5777776643321100   00   1111 1112234555666  77776


Q ss_pred             CC-----------CcEEEEECCCceEEE--EeccCCCceeEEEEEccCCeEEeeec
Q 045370          176 ED-----------KTVCLWDVTRRVSIR--RFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       176 ~d-----------g~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .+           ..+.+||..+.+-..  .+...........+.|++++++.|+.
T Consensus       475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            54           468999998765322  22222222334556799999998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.54  E-value=0.0058  Score=56.97  Aligned_cols=71  Identities=13%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             eEEEEeeCCCcEEEEEeC-CCcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEc-cC-----CeEEEEeCCcc
Q 045370           68 TGLLTISGGTTFFVSSSL-DATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGS-ID-----GRIFVSPLKFL  138 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~  138 (350)
                      .++++. .++.+++.|+. +..+.+||..+++....  +.....-.++++.++++.++.|+ .+     ..+.+||..+.
T Consensus       246 ~~~~~~-~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          246 PGISMD-GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             CEEEEC-TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ccccCC-CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            344443 36788888884 45899999988765443  22233334566777899888888 34     57899998765


Q ss_pred             c
Q 045370          139 L  139 (350)
Q Consensus       139 ~  139 (350)
                      .
T Consensus       325 ~  325 (656)
T 1k3i_A          325 T  325 (656)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.54  E-value=0.023  Score=48.27  Aligned_cols=146  Identities=13%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             cCCceEEEEeeC-CC--cEEEEEeC--CCcEEEEeCCCC--ceEE--EEec--CCceeEEEEcCCCcEEEEEcc------
Q 045370           64 KSSVTGLLTISG-GT--TFFVSSSL--DATCKVWDLGSG--ILIQ--TQVY--PQAVTAIAFHPGEQLLFAGSI------  126 (350)
Q Consensus        64 ~~~v~~~~~~~~-~~--~~l~s~~~--d~~v~vwd~~~~--~~~~--~~~~--~~~v~~~~~~~~~~~l~~~~~------  126 (350)
                      ......+.+... ++  .++++-..  +.+|.+|++..+  ....  .+.+  -...+.+.+.++|.+.++...      
T Consensus       111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred             ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence            345666666552 22  23444333  467888877653  2222  2222  235789999999987776541      


Q ss_pred             -----------CCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC-ceE-
Q 045370          127 -----------DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR-RVS-  190 (350)
Q Consensus       127 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~-~~~-  190 (350)
                                 .|.|+.+|..             ....+...-...+.++|+|++   +++-+..+.|+.||+.. +.. 
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~-------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~  257 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPN-------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT  257 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTT-------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cccchhhccCCccEEEEEECC-------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe
Confidence                       2445555432             111222333567899999998   45555678999999863 332 


Q ss_pred             -EEEeccCCCceeEEEEEc-cCCeEEeeecC-cccc
Q 045370          191 -IRRFNHKKGVVTNLVVIR-QSSLLSEVSNC-QRKL  223 (350)
Q Consensus       191 -~~~~~~~~~~v~~l~~~~-~~~~l~~~~~~-~~~~  223 (350)
                       ...+. ..+..-.+++.+ +|.+.+++..+ .+++
T Consensus       258 ~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~  292 (355)
T 3sre_A          258 PLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIF  292 (355)
T ss_dssp             EEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHH
T ss_pred             cCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEE
Confidence             22332 346678899999 59988766544 3444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.50  E-value=0.0032  Score=55.40  Aligned_cols=143  Identities=7%  Similarity=-0.010  Sum_probs=86.1

Q ss_pred             CCceEEEEeeC--CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-----eEEEEeCCc
Q 045370           65 SSVTGLLTISG--GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-----RIFVSPLKF  137 (350)
Q Consensus        65 ~~v~~~~~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  137 (350)
                      .....+++.+.  ++.+ +.+...+.|+.+|..++..............++++++++ |+++...+     .+..++...
T Consensus       139 ~~P~gvavd~~s~~g~L-yv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDL-YWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEE-EEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEE-EEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678888763  3554 444434899999998887766655556689999999999 55544321     233333221


Q ss_pred             cccccccccccccceeeeccCCceEEEEecC-Ce-EEEEe-CCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCe
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSA-SH-LISAS-EDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSL  212 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-l~s~~-~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~  212 (350)
                       ....        ...+ ........++++| ++ |+.+. .++.|+.+|..++.....+.  .....-..++|+|+++.
T Consensus       217 -~~~~--------~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          217 -GFTE--------RLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             -TTCC--------EEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             -Ceec--------cccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence             1000        0011 1234456788898 66 55444 56789999998776633332  11222346999999996


Q ss_pred             EEeeecC
Q 045370          213 LSEVSNC  219 (350)
Q Consensus       213 l~~~~~~  219 (350)
                      |+.+...
T Consensus       287 LYvad~~  293 (433)
T 4hw6_A          287 AYIIYNG  293 (433)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            6655554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.50  E-value=0.026  Score=48.68  Aligned_cols=137  Identities=17%  Similarity=0.160  Sum_probs=85.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEecC-----CceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc-cc-cc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYP-----QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF-IV-GE  148 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~  148 (350)
                      ++..++.+ .++.||.-++..+..-+.+..+     ..+..+..+|+|++|+..+ +..|.+..+..+...... .. ..
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            44445554 3578888888855444444443     2688999999999999886 568888888733211110 00 00


Q ss_pred             ccceeeec------cCCceEEEEecCCe-----EEEEeCCCcEEEEECCCc--eEEEEec---------cCCCceeEEEE
Q 045370          149 DQHSVLKG------HNGSITALAFSASH-----LISASEDKTVCLWDVTRR--VSIRRFN---------HKKGVVTNLVV  206 (350)
Q Consensus       149 ~~~~~~~~------~~~~i~~~~~~~~~-----l~s~~~dg~v~iwd~~~~--~~~~~~~---------~~~~~v~~l~~  206 (350)
                      -..+.+.-      ...+|..+.|+|-+     |++-..|+.|++||+...  ++. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence            01111111      35789999999976     999999999999999852  122 222         12245677778


Q ss_pred             EccCCeEEe
Q 045370          207 IRQSSLLSE  215 (350)
Q Consensus       207 ~~~~~~l~~  215 (350)
                      .+++-.|..
T Consensus       188 g~~~lTLYv  196 (452)
T 3pbp_A          188 SKDGLTLYC  196 (452)
T ss_dssp             CTTSSCEEE
T ss_pred             cCCCcEEEE
Confidence            776544443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.42  E-value=0.031  Score=47.06  Aligned_cols=152  Identities=10%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcE-EEEeC--CCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATC-KVWDL--GSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v-~vwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      .+...+..+.+.+ ++.+++.+. +|.+ +-+|-  .+-+.+ .......+..+.+.+++..+++ +.+|.+++.+...+
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCC
Confidence            3445677888765 556665554 4544 33443  122222 1234567888999998876554 45788777642212


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec---cCCCceeEEEEEccCCeEE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN---HKKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~  214 (350)
                      ..-...  . .+  .+ .+...+.++.+.+++ ++.++.+|.|. +....++.-..+.   .....+.++.|.+++.+++
T Consensus       236 ~tW~~~--~-~~--~~-~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~  308 (327)
T 2xbg_A          236 ENWGEL--L-SP--LR-RNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI  308 (327)
T ss_dssp             EEECCC--B-CT--TS-SCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred             CeeEec--c-CC--cc-cCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence            111000  0 00  00 122357889998877 66666678773 4444343222232   2345688899987666555


Q ss_pred             eeecCcccccc
Q 045370          215 EVSNCQRKLKK  225 (350)
Q Consensus       215 ~~~~~~~~~~~  225 (350)
                       ++.++.+++.
T Consensus       309 -~G~~G~i~~~  318 (327)
T 2xbg_A          309 -LGQKGILLRY  318 (327)
T ss_dssp             -ECSTTEEEEE
T ss_pred             -EcCCceEEEE
Confidence             5566666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.38  E-value=0.022  Score=52.58  Aligned_cols=135  Identities=10%  Similarity=0.007  Sum_probs=79.3

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEcc--CCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~  141 (350)
                      ....++++...++.++++-...+.|.+.++......... ..-.....|+++|.+..|+.+..  .+.|...++...   
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---
Confidence            567888887766777777777899999998865443333 23345789999997665555542  356766665421   


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                             .........-...+.|+++++.   +++-...+.|..+|+.................+|++..+
T Consensus       161 -------~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          161 -------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED  224 (619)
T ss_dssp             -------SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred             -------ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence                   1111222234567889999854   444445678999988754332222212223345666544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.047  Score=52.01  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=92.1

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      ...|.++...+ ++. |..|+.++-|..+|..+++......   ....|.++..++++.. ..|+. +-|..||..+...
T Consensus       406 ~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          406 SNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC
T ss_pred             CcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE
Confidence            45688887644 444 5557777779999988776543321   2356889988887764 44554 5688898775433


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc---CCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH---KKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~  216 (350)
                      .......     ........|.++...+++ |..|+.++-|..||..+++...-...   ....|.++...++|.+.+++
T Consensus       482 ~~~~~~~-----~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          482 IHHYDTS-----NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             CEEECTT-----TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             EecccCc-----ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            2110000     000113678999999988 88888755688899887654432211   23468888888899877744


Q ss_pred             e
Q 045370          217 S  217 (350)
Q Consensus       217 ~  217 (350)
                      .
T Consensus       557 ~  557 (781)
T 3v9f_A          557 G  557 (781)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.30  E-value=0.0046  Score=58.62  Aligned_cols=142  Identities=17%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             CceEEEEeeCCCcEEEEE-eCCC----cEEEEeCCCC-ceEEE-EecCCceeEEEEcCCCcEEEEEccC-----CeEEEE
Q 045370           66 SVTGLLTISGGTTFFVSS-SLDA----TCKVWDLGSG-ILIQT-QVYPQAVTAIAFHPGEQLLFAGSID-----GRIFVS  133 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~-~~d~----~v~vwd~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~  133 (350)
                      .+....|+++++++++-+ ..+|    .|+++|+.++ +.+.. +.  .....++|+||++.|+....+     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            466777861466666543 3333    4999999998 63221 11  124578899999887776654     257777


Q ss_pred             eCCccccccccccccccceeee-ccCCceEEEEecCCe--EEEEe---CCCcEEEEECCCc--eE-EEEe-ccCCCceeE
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLK-GHNGSITALAFSASH--LISAS---EDKTVCLWDVTRR--VS-IRRF-NHKKGVVTN  203 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~--l~s~~---~dg~v~iwd~~~~--~~-~~~~-~~~~~~v~~  203 (350)
                      ++.+.....        ...+. ........+.|+|++  |+..+   ....|+++|+.++  .. +..+ ....+...+
T Consensus       253 ~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          253 VMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             ETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             ECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence            776432111        11211 222346678999999  44333   2346888999875  22 1333 233445555


Q ss_pred             EEEEccCCeEEeee
Q 045370          204 LVVIRQSSLLSEVS  217 (350)
Q Consensus       204 l~~~~~~~~l~~~~  217 (350)
                      +.|+..+.+++.+.
T Consensus       325 ~~~~~g~~l~~~t~  338 (751)
T 2xe4_A          325 VQMHGTSHLVILTN  338 (751)
T ss_dssp             EEEETTTEEEEEEC
T ss_pred             EeeeeCCEEEEEeC
Confidence            55554444444433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.27  E-value=0.0016  Score=61.03  Aligned_cols=135  Identities=9%  Similarity=-0.095  Sum_probs=78.0

Q ss_pred             CCceEEEEeeCCCcEEEEEeCC-CcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLD-ATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~  141 (350)
                      .....+++.+.++.++++-... +.|.+.++.......... .-.....|+|+|++..|+ +-+..+.|..+++......
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence            4456777766555555544333 678887776432222211 223467899998765554 4455678999998631110


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI  207 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  207 (350)
                              .+............|++..+. +++....+.|..+|..+++.+..+.........|++.
T Consensus       576 --------~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          576 --------TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             --------EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             --------EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence                    000001111234456666667 6666677899999999998888775433334555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.036  Score=52.76  Aligned_cols=142  Identities=10%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      ...|.++...+ ++. +..|+.++-|..||..++......    .....|.++..++++.+ ..|+.++-+..+|..++.
T Consensus       362 ~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          362 NKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             SSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCE
T ss_pred             CcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCc
Confidence            35678887644 344 566776777999998765433211    12356888888877654 456666778889876543


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEeccC-----CCceeEEEEEccCCeE
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNHK-----KGVVTNLVVIRQSSLL  213 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l  213 (350)
                      .....   .     .......|.++...+++ |..|+. +-|..||..+++........     ...|.++...++|.+.
T Consensus       439 ~~~~~---~-----~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  509 (781)
T 3v9f_A          439 FQIIE---L-----EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW  509 (781)
T ss_dssp             EEECC---S-----TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred             EEEec---c-----CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence            22110   0     01234678999999888 777776 56899998876543322211     3578899999999887


Q ss_pred             Eeee
Q 045370          214 SEVS  217 (350)
Q Consensus       214 ~~~~  217 (350)
                      +++.
T Consensus       510 igt~  513 (781)
T 3v9f_A          510 IGTF  513 (781)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            7443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.25  E-value=0.0088  Score=53.13  Aligned_cols=152  Identities=8%  Similarity=0.026  Sum_probs=89.9

Q ss_pred             CceEEEEeeC-CCcEEEEEeCCCcEEEEeCCCCceEEEEecC----CceeEEEE-------cCCCcEEEEEccCC-----
Q 045370           66 SVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGILIQTQVYP----QAVTAIAF-------HPGEQLLFAGSIDG-----  128 (350)
Q Consensus        66 ~v~~~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~l~~~~~dg-----  128 (350)
                      ....+++.|. +++++++....+.|++.|+.++.+.......    .....++|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3567888763 4455555554577999999988776655432    25889999       99999777766543     


Q ss_pred             --eEEEEeCCc-cccccccccccccceeeeccCCceEEEEecCC-e--EEEEeCCCcEEEEECC-------CceE-----
Q 045370          129 --RIFVSPLKF-LLLEDHFIVGEDQHSVLKGHNGSITALAFSAS-H--LISASEDKTVCLWDVT-------RRVS-----  190 (350)
Q Consensus       129 --~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~--l~s~~~dg~v~iwd~~-------~~~~-----  190 (350)
                        .|.+++... +.....  ...   ..+.. -.....++++|+ +  +++-..++.|+.+|+.       ++..     
T Consensus       220 ~~~V~~i~r~~~G~~~~~--~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDR--SDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             EEEEEEEECCTTSCCSTT--SCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CceEEEEecCCCCceeec--ccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence              266665332 111100  000   01111 123457788994 4  4455577889999987       4443     


Q ss_pred             ---------EEEeccCCCceeEEEEEccCCeEEeeecC-ccccc
Q 045370          191 ---------IRRFNHKKGVVTNLVVIRQSSLLSEVSNC-QRKLK  224 (350)
Q Consensus       191 ---------~~~~~~~~~~v~~l~~~~~~~~l~~~~~~-~~~~~  224 (350)
                               +.... .......++|+|+|++|+.+... .++++
T Consensus       294 ~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          294 KNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             GGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence                     22222 23446789999999965555544 34443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.22  E-value=0.015  Score=48.95  Aligned_cols=143  Identities=8%  Similarity=0.103  Sum_probs=92.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCC----Cc---EEEEEcc---CCeEEEEeCC--cccccccc
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPG----EQ---LLFAGSI---DGRIFVSPLK--FLLLEDHF  144 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~~~~~~  144 (350)
                      ..+++.....+-+.+||+ +|+.++.+.. +.++.+.+-|+    |+   ++++...   ++.|.+|++.  +..+... 
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i-  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM-  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC-
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec-
Confidence            356676777889999999 7888888754 56777777662    22   2333333   5789999773  2211110 


Q ss_pred             ccccccceeeeccCCceEEEEe--cCC-e---EEEEeCCCcEEEEEC-------CCceEEEEeccCCCceeEEEEEccCC
Q 045370          145 IVGEDQHSVLKGHNGSITALAF--SAS-H---LISASEDKTVCLWDV-------TRRVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~--~~~-~---l~s~~~dg~v~iwd~-------~~~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                        ... ...+......+..+++  +|. +   +++...+|.+..|++       .+.+.++++.. .+.+-.+...+...
T Consensus       117 --~~~-~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g  192 (355)
T 3amr_A          117 --TDP-DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG  192 (355)
T ss_dssp             --SCT-TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred             --ccc-ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence              000 0000011145566666  663 3   777778899999988       24567777774 46788999999888


Q ss_pred             eEEeeecCccccccc
Q 045370          212 LLSEVSNCQRKLKKD  226 (350)
Q Consensus       212 ~l~~~~~~~~~~~~~  226 (350)
                      .|+.+-.+..+|.+.
T Consensus       193 ~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          193 RLYIAEEDEAIWKFS  207 (355)
T ss_dssp             EEEEEETTTEEEEEE
T ss_pred             eEEEecccceEEEEe
Confidence            888888887777765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.17  E-value=0.11  Score=48.02  Aligned_cols=121  Identities=7%  Similarity=-0.103  Sum_probs=77.4

Q ss_pred             ccCCceEEEEeeCCCcEEEEE-eCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCcccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSS-SLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLL  140 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~  140 (350)
                      .-....++++.|..+.++++- +..+.|...++...........-.....+++++++..|+.+ ...+.|..+|+.....
T Consensus       121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            335568898887666655554 23567888887755444444444568899999976666655 4568899998863211


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEe
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                                 ..+.........+++..+. +++-...+.|...|..+++....+
T Consensus       201 -----------~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          201 -----------EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             -----------EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -----------EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence                       1222333455678887766 555556788999998776543333

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.17  E-value=0.064  Score=46.29  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc------------eEEEEe-------cCCceeEEEEcCC---CcEEEE
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI------------LIQTQV-------YPQAVTAIAFHPG---EQLLFA  123 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~------------~~~~~~-------~~~~v~~~~~~~~---~~~l~~  123 (350)
                      .|..+..++ +|.+||..+ +..|.|-.+..+.            ....+.       ...+|..+.|||-   +..|++
T Consensus        67 ~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            566776644 778887775 5678888877321            111222       2467999999994   568999


Q ss_pred             EccCCeEEEEeCCccccccccccc-cccceeeeccCCceEEEEecCCe--EEEEe--CCCcEEEE
Q 045370          124 GSIDGRIFVSPLKFLLLEDHFIVG-EDQHSVLKGHNGSITALAFSASH--LISAS--EDKTVCLW  183 (350)
Q Consensus       124 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--l~s~~--~dg~v~iw  183 (350)
                      -..|+.|++||+....... .... .............|.+++|.+++  |...+  .+|.|+-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P-~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKP-IVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCC-EEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCC-cchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999998622111 1111 00111222334678899999988  66544  77877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.05  E-value=0.19  Score=46.32  Aligned_cols=149  Identities=9%  Similarity=-0.009  Sum_probs=84.3

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc-c-CCeEEEEeCCccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS-I-DGRIFVSPLKFLLLE  141 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~  141 (350)
                      ....++++...+++++++-+..+.|.+.++.......... .-.....++++|....|+.+. . .+.|...++...   
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~---  468 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS---  468 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---
Confidence            5667888876567777777778899999987554332232 235688999999744444443 2 356666665421   


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe--EEEE-eCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH--LISA-SEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                             .........-...+.|++++..  |+.+ +..+.|..+++........+........+|+...+  .|+.+..
T Consensus       469 -------~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~  539 (619)
T 3s94_A          469 -------DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDW  539 (619)
T ss_dssp             -------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECT
T ss_pred             -------ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeec
Confidence                   1111222234567889998754  5544 45578888888643221112222233456666543  4554444


Q ss_pred             C-cccccc
Q 045370          219 C-QRKLKK  225 (350)
Q Consensus       219 ~-~~~~~~  225 (350)
                      . ..++.+
T Consensus       540 ~~~~I~~~  547 (619)
T 3s94_A          540 QRRSIERV  547 (619)
T ss_dssp             TSSCEEEE
T ss_pred             CCCeEEEE
Confidence            3 334433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.093  Score=46.63  Aligned_cols=119  Identities=10%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             CCceEEEE-------eeCCCcEEEEEeCCC-------cEEEEeCCC-CceE-----EEEecCCceeEEEEcCC-CcEEEE
Q 045370           65 SSVTGLLT-------ISGGTTFFVSSSLDA-------TCKVWDLGS-GILI-----QTQVYPQAVTAIAFHPG-EQLLFA  123 (350)
Q Consensus        65 ~~v~~~~~-------~~~~~~~l~s~~~d~-------~v~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~l~~  123 (350)
                      .....++|       .+ ++..++.+...+       .|.+.+... +...     ..+..-.....++++|+ +.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCC-CCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE
Confidence            35788888       66 445444444433       266665443 2221     22222234567889995 455556


Q ss_pred             EccCCeEEEEeCC-------ccccccccccc----cccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEEC
Q 045370          124 GSIDGRIFVSPLK-------FLLLEDHFIVG----EDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDV  185 (350)
Q Consensus       124 ~~~dg~i~i~d~~-------~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~  185 (350)
                      -..++.|..+|+.       ++.........    ...+... +.....+.++|+|++   +++-+....|+.+|.
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            6677889999987       33220000000    0011111 223456899999998   344456778888654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.88  E-value=0.16  Score=42.64  Aligned_cols=138  Identities=7%  Similarity=-0.067  Sum_probs=78.7

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeC--Ccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL--KFLLL  140 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~  140 (350)
                      ..+..+.+.+ ++..++.+ .++.|.. ..+.|+.-...  .....+..+.+.+++.+++++...+..+-.|-  .+...
T Consensus       122 ~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE
Confidence            4466777655 34555544 4564422 12223322222  34457889999998888877754443333332  11110


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEecc----CCCceeEEEEEccCCeEEe
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFNH----KKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~  215 (350)
                                  .-......+..+.+.+++ ++.++.+|.+++++...++.-..+..    +...+.++.+.+++.++++
T Consensus       199 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          199 ------------HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             ------------EECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             ------------CCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence                        011234578889998888 77777888888775333443333321    2235788889888887775


Q ss_pred             ee
Q 045370          216 VS  217 (350)
Q Consensus       216 ~~  217 (350)
                      +.
T Consensus       267 g~  268 (327)
T 2xbg_A          267 GG  268 (327)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.79  E-value=0.18  Score=46.08  Aligned_cols=116  Identities=10%  Similarity=0.073  Sum_probs=70.1

Q ss_pred             EEEEEe------CCCcEEEEeCCCCceEEEEecCCc------------------------------------------ee
Q 045370           79 FFVSSS------LDATCKVWDLGSGILIQTQVYPQA------------------------------------------VT  110 (350)
Q Consensus        79 ~l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~------------------------------------------v~  110 (350)
                      .++.++      .++.|.-+|..+|+.+........                                          -.
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            455554      378999999999998876543210                                          01


Q ss_pred             EEEEcCCCcEEEEEcc--------------------C----CeEEEEeCCccccccccccccccceeeeccCCceEEEEe
Q 045370          111 AIAFHPGEQLLFAGSI--------------------D----GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAF  166 (350)
Q Consensus       111 ~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  166 (350)
                      .++++|....++.++.                    |    +.|..+|..+++....+.........+.....++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            3566777777776653                    2    58999999887655432111100000111112222 222


Q ss_pred             c-CCe-----EEEEeCCCcEEEEECCCceEEEEec
Q 045370          167 S-ASH-----LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       167 ~-~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                      . .++     ++.++.+|.++++|..+|+.+..+.
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            1 222     7788999999999999999987765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.75  E-value=0.2  Score=42.58  Aligned_cols=96  Identities=17%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccccee---eeccccCCceEEEEeeC--
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH---YSLEHKSSVTGLLTISG--   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~--   75 (350)
                      |+|.|||+++++ ..+|.|.+++ .. .                         ...+.   ...........+++.+.  
T Consensus        36 ia~~pdG~l~V~-e~~g~I~~i~-~g-~-------------------------~~~~~~~~v~~~g~~~p~gia~~pdf~   87 (352)
T 2ism_A           36 LAFLPDGGMLIA-ERPGRIRLFR-EG-R-------------------------LSTYAELSVYHRGESGLLGLALHPRFP   87 (352)
T ss_dssp             EEECTTSCEEEE-ETTTEEEEEE-TT-E-------------------------EEEEEECCCCCSTTCSEEEEEECTTTT
T ss_pred             EEEcCCCeEEEE-eCCCeEEEEE-CC-C-------------------------ccEeecceEeecCCCCceeEEECCCCC
Confidence            578999986655 5669999887 31 0                         00000   11122356788888664  


Q ss_pred             -CCcEEEEEeCC-----CcEEEEeCCCCce-----EEE-Eec----CCceeEEEEcCCCcEEEEE
Q 045370           76 -GTTFFVSSSLD-----ATCKVWDLGSGIL-----IQT-QVY----PQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        76 -~~~~l~s~~~d-----~~v~vwd~~~~~~-----~~~-~~~----~~~v~~~~~~~~~~~l~~~  124 (350)
                       ++.++++-...     +.|..++...+..     +.. +..    ......++|.|+|.++++.
T Consensus        88 ~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           88 QEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             CCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence             34544444432     5677888765421     111 221    1234689999999766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.26  E-value=0.078  Score=41.37  Aligned_cols=150  Identities=10%  Similarity=0.016  Sum_probs=83.8

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce------EEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL------IQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      ..+..++|+| ++.+.+.  .+|.+.-.+..+...      -..+...  ....++.|+|+|.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            3677998877 7775555  678766666654211      1112211  11578999999998888  56999888754


Q ss_pred             ccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCce------EEEEec-cCCCceeEEEEEc
Q 045370          137 FLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRV------SIRRFN-HKKGVVTNLVVIR  208 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~------~~~~~~-~~~~~v~~l~~~~  208 (350)
                      +..... +....  ...-..--..+..|.+.|++ |.+.. |+.++-+...+..      ....+- ..-...+-+.|.|
T Consensus       116 ~~~~~~-Wl~~a--~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDN-WIARA--TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCC-HHHHS--EEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCc-eeccc--cEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            321111 11110  00111112467999999999 77777 8886543332111      011111 1122344567889


Q ss_pred             cCCeEEeeecCcccccc
Q 045370          209 QSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       209 ~~~~l~~~~~~~~~~~~  225 (350)
                      ++.+.++.  +++++..
T Consensus       192 ~G~l~~v~--~g~~Y~~  206 (236)
T 1tl2_A          192 VGTLFGVQ--GGKFYED  206 (236)
T ss_dssp             TSCEEEEE--TTEEEEE
T ss_pred             CCcEEEEe--CCeEEec
Confidence            99888855  5555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.24  E-value=0.081  Score=41.27  Aligned_cols=136  Identities=9%  Similarity=-0.021  Sum_probs=77.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCc------eEEEEec--CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccccccc
Q 045370           77 TTFFVSSSLDATCKVWDLGSGI------LIQTQVY--PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE  148 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  148 (350)
                      ..+|+....| +|+.=.+..+.      ....+..  =..+..++|+|+|.+.++  .+|.++-.+..+......... .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c
Confidence            3456666666 66665555443      2223333  247889999998886666  688887777653222111100 0


Q ss_pred             ccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCc---------eEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          149 DQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRR---------VSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       149 ~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ..+-.. +- ..-.++.|.|++ |..+ .||.|+-++..+.         ..+..  .--..+..|.|.|+|.+.++.  
T Consensus        80 t~IG~~-Gw-~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~--~gw~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           80 KKIGNG-GW-NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGS--GGWSGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             EEEECS-CG-GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEEC--SSGGGEEEEEECTTSCEEEEE--
T ss_pred             cEeccc-cc-ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEecc--CCCCceEEEEECCCceEEEEe--
Confidence            000000 11 113678899999 5555 6799988876331         11111  111357899999999998866  


Q ss_pred             Ccccc
Q 045370          219 CQRKL  223 (350)
Q Consensus       219 ~~~~~  223 (350)
                      ++++.
T Consensus       153 dg~ly  157 (236)
T 1tl2_A          153 GQQFY  157 (236)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            55443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.00  E-value=0.52  Score=38.72  Aligned_cols=132  Identities=10%  Similarity=0.088  Sum_probs=66.5

Q ss_pred             CCcEEEEEeCCC-----cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccC-------CeEEEEeCCccccc
Q 045370           76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSID-------GRIFVSPLKFLLLE  141 (350)
Q Consensus        76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~  141 (350)
                      ++.+++.|+.++     .+.+||+.+.+....-.  ....-.+++.. ++..++.|+.+       ..+.+||+.+....
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            557777777654     47788988876554422  22222233332 56666666542       35888888765432


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCceEE--EEeccCCCceeEEEEEccCCeE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRVSI--RRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      ..   .     .+....... ++....+. ++.|+.+     ..+.+||+.+.+-.  ..+...... .++ ..-+++++
T Consensus       187 ~~---~-----~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~-~~~~~~i~  255 (302)
T 2xn4_A          187 YI---A-----EMSTRRSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV-CAVNGLLY  255 (302)
T ss_dssp             EE---C-----CCSSCCBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEE
T ss_pred             EC---C-----CCccccccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE-EEECCEEE
Confidence            21   0     111111111 22233344 6666654     36899999876432  222211111 122 22356666


Q ss_pred             EeeecC
Q 045370          214 SEVSNC  219 (350)
Q Consensus       214 ~~~~~~  219 (350)
                      +.|+.+
T Consensus       256 v~GG~~  261 (302)
T 2xn4_A          256 VVGGDD  261 (302)
T ss_dssp             EECCBC
T ss_pred             EECCcC
Confidence            666644

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.97  E-value=0.54  Score=39.84  Aligned_cols=60  Identities=13%  Similarity=0.057  Sum_probs=35.7

Q ss_pred             CceEEEEecCCe-EEEEeCCCcEEEEECCCce----E--EEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          159 GSITALAFSASH-LISASEDKTVCLWDVTRRV----S--IRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       159 ~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~----~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .....++|.... +++....+.|...++....    .  ...+......+..+++.|+|.+.++...
T Consensus       268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          268 FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            356677774444 4444455677777765332    1  1222222357899999999987776543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.84  E-value=0.61  Score=38.27  Aligned_cols=105  Identities=10%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             CCcEEEEEeCCC-----cEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccccccc
Q 045370           76 GTTFFVSSSLDA-----TCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLLLEDH  143 (350)
Q Consensus        76 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  143 (350)
                      ++.+++.|+.++     .+.+||+.+++....-.  ....-.+++.. ++..++.|+.+     ..+.+||+.+......
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            566777776543     58889988876554432  22222223322 66777777654     4688888876543221


Q ss_pred             cccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCceE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRVS  190 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~~  190 (350)
                         .     .+........++. ..+. ++.|+.+     ..+.+||+.+.+-
T Consensus       191 ---~-----~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          191 ---T-----PMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             ---C-----CCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ---C-----CCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence               0     1111111112222 3344 6666654     4689999987653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.82  E-value=0.74  Score=39.05  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccccee---eeccccCCceEEEEeeC--
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH---YSLEHKSSVTGLLTISG--   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~--   75 (350)
                      |+|.|||+++++ ..+|.|.+++...                           ...+.   ...........+++.+.  
T Consensus        34 ia~~pdG~l~V~-e~~g~I~~~d~~G---------------------------~~~~~~~~v~~~g~~g~~gia~~pdf~   85 (354)
T 3a9g_A           34 IAPLGGGRYLVT-ERPGRLVLISPSG---------------------------KKLVASFDVANVGEAGLLGLALHPEFP   85 (354)
T ss_dssp             EEEEETTEEEEE-ETTTEEEEECSSC---------------------------EEEEEECCCCCSTTCSEEEEEECTTTT
T ss_pred             EEEcCCCeEEEE-eCCCEEEEEeCCC---------------------------ceEeeccceeecCCCceeeEEeCCCCC
Confidence            578999975554 5669998887431                           00011   01112345788888764  


Q ss_pred             -CCcEEEEEeC---C----CcEEEEeCCCC--c-----eEE-EEec--CCceeEEEEcCCCcEEEEE
Q 045370           76 -GTTFFVSSSL---D----ATCKVWDLGSG--I-----LIQ-TQVY--PQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        76 -~~~~l~s~~~---d----~~v~vwd~~~~--~-----~~~-~~~~--~~~v~~~~~~~~~~~l~~~  124 (350)
                       ++.++++-+.   +    ..|..|+...+  .     .+. .+..  ......++|.|+|.++++.
T Consensus        86 ~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           86 KKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             TSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             cCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence             4555554432   3    56777776654  1     111 1221  1235679999999866664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.68  E-value=0.52  Score=39.96  Aligned_cols=133  Identities=6%  Similarity=-0.045  Sum_probs=73.1

Q ss_pred             CCCcEEEEeCCC--CceEEE-Eec------CCceeEEEEcC--CCc-EEEEE-cc--CCeEEEEeCCccccccccccccc
Q 045370           85 LDATCKVWDLGS--GILIQT-QVY------PQAVTAIAFHP--GEQ-LLFAG-SI--DGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        85 ~d~~v~vwd~~~--~~~~~~-~~~------~~~v~~~~~~~--~~~-~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      .+|.|.++|+.+  ++.... +..      .-....+.+.+  ++. +|+++ ..  +..|.+|++......      ..
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~------~~  154 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS------LL  154 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE------EE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE------EE
Confidence            689999999984  332211 211      13567777766  343 45444 22  467788777642111      01


Q ss_pred             cceeeec-cCCceEEEEecCCe-EEEEeC------------------CCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          150 QHSVLKG-HNGSITALAFSASH-LISASE------------------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       150 ~~~~~~~-~~~~i~~~~~~~~~-l~s~~~------------------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                      .+..+.+ .-...+.+.+.+++ +..++.                  .|.|+-+|...-+   .+...-.....++|+||
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~---~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE---EEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEE---EeecCCcccCcceECCC
Confidence            1112222 23467899999988 544432                  2456666653222   22222345688999999


Q ss_pred             CCeEEeeecCccccccc
Q 045370          210 SSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       210 ~~~l~~~~~~~~~~~~~  226 (350)
                      ++.|+.+......+...
T Consensus       232 g~~lYvadt~~~~I~~~  248 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVY  248 (355)
T ss_dssp             SSEEEEEEGGGTEEEEE
T ss_pred             CCEEEEEeCCCCeEEEE
Confidence            99888777654444333

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.44  E-value=0.59  Score=39.64  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMT   25 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~   25 (350)
                      |+|.|||++|+.+...|.|++++..
T Consensus        23 i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           23 LAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEECSTTCCEEEEETTTEEEEEETT
T ss_pred             EEEcCCCCEEEEEeCCceEEEEeCC
Confidence            5799999834445567999998754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.38  E-value=0.81  Score=37.77  Aligned_cols=105  Identities=8%  Similarity=-0.014  Sum_probs=56.4

Q ss_pred             CCcEEEEEeCC-----CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccccccc
Q 045370           76 GTTFFVSSSLD-----ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLLLEDH  143 (350)
Q Consensus        76 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  143 (350)
                      ++.+++.|+.+     ..+.+||+.+++....-.  ....-.+++.. ++..++.|+.+     ..+.+||+.+......
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  199 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI  199 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence            55677777644     358889998876544322  22222233332 56677777654     4688888876543221


Q ss_pred             cccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCceE
Q 045370          144 FIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRVS  190 (350)
Q Consensus       144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~~  190 (350)
                      .        .+........++.+ .+. ++.|+.+     ..+.+||+.+.+-
T Consensus       200 ~--------~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          200 T--------AMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             C--------CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             C--------CCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            1        11111111222233 344 6666654     4689999987653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.35  E-value=0.88  Score=37.41  Aligned_cols=132  Identities=9%  Similarity=0.023  Sum_probs=66.5

Q ss_pred             CCcEEEEEeCC------CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEcc---------CCeEEEEeCCcc
Q 045370           76 GTTFFVSSSLD------ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSI---------DGRIFVSPLKFL  138 (350)
Q Consensus        76 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~  138 (350)
                      ++.+++.|+.+      ..+.+||+.+.+....-.  ....-.+++. -++..++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            56777777765      458899998876554422  2222222332 25666666653         345888888765


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCceE--EEEeccCCCceeEEEEEccC
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQS  210 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~  210 (350)
                      ......        .+....... ++....+. ++.|+.+     ..+.+||+.+.+-  +..+.........+.+  ++
T Consensus       180 ~W~~~~--------~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  248 (306)
T 3ii7_A          180 TWTELC--------PMIEARKNH-GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS  248 (306)
T ss_dssp             EEEEEC--------CCSSCCBSC-EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT
T ss_pred             eEEECC--------Cccchhhcc-eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC
Confidence            432211        111111111 22223344 6666543     4688999987542  2222211111222222  56


Q ss_pred             CeEEeeecC
Q 045370          211 SLLSEVSNC  219 (350)
Q Consensus       211 ~~l~~~~~~  219 (350)
                      ++++.|+.+
T Consensus       249 ~i~v~GG~~  257 (306)
T 3ii7_A          249 IVYVLAGFQ  257 (306)
T ss_dssp             EEEEEECBC
T ss_pred             EEEEEeCcC
Confidence            666666644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.21  E-value=1.4  Score=38.29  Aligned_cols=157  Identities=12%  Similarity=0.085  Sum_probs=86.4

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEec-----CCceeEEEEcCCCcEEEEEcc-------CCeE
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-ILIQTQVY-----PQAVTAIAFHPGEQLLFAGSI-------DGRI  130 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-------dg~i  130 (350)
                      ...|.-..|.+++  .|+..+ +..|.-|++... .+...+..     ...|..-..++++++++..+-       .|.+
T Consensus       105 ~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m  181 (494)
T 1bpo_A          105 TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (494)
T ss_dssp             SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence            4678888898754  344443 567999999743 34444431     234666666777777664331       3566


Q ss_pred             EEEeCCcccccc---------ccccc-----------------cccceee-----------------------eccCCce
Q 045370          131 FVSPLKFLLLED---------HFIVG-----------------EDQHSVL-----------------------KGHNGSI  161 (350)
Q Consensus       131 ~i~d~~~~~~~~---------~~~~~-----------------~~~~~~~-----------------------~~~~~~i  161 (350)
                      .+|..+......         .....                 ...++.+                       ....+-.
T Consensus       182 QLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP  261 (494)
T 1bpo_A          182 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (494)
T ss_dssp             EEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred             EEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence            777665432000         00000                 0000000                       0012234


Q ss_pred             EEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          162 TALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       162 ~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      .++..++..  +..-..-|.|++||+.++.++..-.....+|..-+.+....-+++....+.++
T Consensus       262 vamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             eEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            455566555  66677789999999999999987765556665555544433333343444333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.10  E-value=1.3  Score=37.46  Aligned_cols=145  Identities=12%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEe----cCCceeEEEEcCC---CcEEEEEcc----C----
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI-LIQTQV----YPQAVTAIAFHPG---EQLLFAGSI----D----  127 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~----d----  127 (350)
                      -.....++|.+ ++. ++.+..+|.|.+++ .++. .+..+.    .......|+++|+   +..|+++..    +    
T Consensus        28 l~~P~~ia~~p-dG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEE-TTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcC-CCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            45678899877 556 44556679999997 3454 111111    1345889999997   555555433    3    


Q ss_pred             CeEEEEeCCccccccccccccccc-eeeec-cCCceEEEEecCCe-EEEEeCC--------------CcEEEEECCCc--
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQH-SVLKG-HNGSITALAFSASH-LISASED--------------KTVCLWDVTRR--  188 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~-l~s~~~d--------------g~v~iwd~~~~--  188 (350)
                      ..|..|+.......  . ...+.+ ..+.. .......|+|.|++ |+.+..|              |.|.-++....  
T Consensus       105 ~~v~r~~~~~~~~~--~-~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          105 NRVIRGRLDGSTFK--L-KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEECSSSCC--E-EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             eEEEEEEECCCCcC--c-CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            56777776532100  0 000000 11111 11124679999999 4444322              45555554321  


Q ss_pred             -------eEEEEeccCCCceeEEEEEc-cCCeEEee
Q 045370          189 -------VSIRRFNHKKGVVTNLVVIR-QSSLLSEV  216 (350)
Q Consensus       189 -------~~~~~~~~~~~~v~~l~~~~-~~~~l~~~  216 (350)
                             ..+.. .++. ....++|+| ++.++++-
T Consensus       182 ~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          182 ADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             TTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEe
Confidence                   01211 1232 347899999 67766643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.08  E-value=0.8  Score=37.60  Aligned_cols=104  Identities=10%  Similarity=0.077  Sum_probs=54.9

Q ss_pred             CCcEEEEEeCC-------CcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccccc
Q 045370           76 GTTFFVSSSLD-------ATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLLLE  141 (350)
Q Consensus        76 ~~~~l~s~~~d-------~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  141 (350)
                      ++.+++.|+.+       ..+.+||+.+++....-  .....-.+++.. ++..++.|+.+     ..+.+||+.+....
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            55667777653       35889999887655442  222222233332 56777777654     46888998765432


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe-EEEEeCCC-----cEEEEECCCce
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDK-----TVCLWDVTRRV  189 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg-----~v~iwd~~~~~  189 (350)
                      ...        .+........ +....+. ++.|+.++     .+.+||+.+.+
T Consensus       234 ~~~--------~~~~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          234 QVA--------DMNMCRRNAG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEC--------CCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eCC--------CCCCccccCe-EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            211        0111111111 2223334 66666543     47888887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.05  E-value=0.11  Score=43.69  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEc--C-CCcEEEEE-ccCCeEEEEeCCccccccccccccccc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFH--P-GEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~--~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      .+++.++.||.|.-.|..+|+....+...  .++....-.  + ++..++.. +.||.|+.++..++.........    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~----   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR----   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH----
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc----
Confidence            46888999999999999999999987654  232221111  1 22333333 68999999998876433211111    


Q ss_pred             eeeeccCCceEE---EEe------cCCe-EEEEeCCCcEEEEECCCceEEEEec
Q 045370          152 SVLKGHNGSITA---LAF------SASH-LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       152 ~~~~~~~~~i~~---~~~------~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                       .+. ...++..   ...      +.++ +++|+.+|.+...|+++|+.+.++.
T Consensus        87 -~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           87 -QLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             -HHH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             -cce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence             000 1112221   001      2355 8999999999999999999999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.98  E-value=1.2  Score=36.40  Aligned_cols=105  Identities=9%  Similarity=0.030  Sum_probs=56.0

Q ss_pred             CCcEEEEEeCC-----CcEEEEeCCCCc---eEEEE--ecCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCcccc
Q 045370           76 GTTFFVSSSLD-----ATCKVWDLGSGI---LIQTQ--VYPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLLL  140 (350)
Q Consensus        76 ~~~~l~s~~~d-----~~v~vwd~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  140 (350)
                      ++.+++.|+.+     ..+.+||+.+++   .....  .....-.+++.. ++..++.|+.+     ..+.+||..+...
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            55677777765     468899998876   44432  222222233332 56677777643     3688888875443


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCceE
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRVS  190 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~~  190 (350)
                      ....        .+........++.+ .+. ++.|+.+     ..+.+||+.+.+-
T Consensus       141 ~~~~--------~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          141 SMLG--------DMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             EEEE--------ECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             EECC--------CCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence            2210        11111111122222 333 6666654     4688999887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.30  E-value=2.1  Score=36.05  Aligned_cols=48  Identities=10%  Similarity=0.109  Sum_probs=27.5

Q ss_pred             CcEEEEeCCCCceEEEEecC--Cce-eEEEEcCCCcEEEEEcc------CCeEEEEeC
Q 045370           87 ATCKVWDLGSGILIQTQVYP--QAV-TAIAFHPGEQLLFAGSI------DGRIFVSPL  135 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~--~~v-~~~~~~~~~~~l~~~~~------dg~i~i~d~  135 (350)
                      ..+.+||+.+.+....-..+  ... .+++.. ++..++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            47889999887655543322  222 333333 5666666653      345777776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.91  E-value=1.8  Score=40.56  Aligned_cols=114  Identities=8%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             CCcEEEEEeCCC--cEEEEeCCCCceEEEEe-----cC-CceeEEEEcCC-CcEEEEEcc--C-----CeEEEEeCCccc
Q 045370           76 GTTFFVSSSLDA--TCKVWDLGSGILIQTQV-----YP-QAVTAIAFHPG-EQLLFAGSI--D-----GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~-----~~-~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~  139 (350)
                      ++.+++.|+.++  .+.+||+.++.......     .. ....++.+..+ +..++.|+.  +     ..+.+||+.+..
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            667788887765  68999998876544321     11 12333555655 666677765  2     468889988654


Q ss_pred             cccccccccccceeee-ccCCceEEEEecCCe-EEEEeC--------CCcEEEEECCCceEE
Q 045370          140 LEDHFIVGEDQHSVLK-GHNGSITALAFSASH-LISASE--------DKTVCLWDVTRRVSI  191 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-l~s~~~--------dg~v~iwd~~~~~~~  191 (350)
                      . .. ...-..+.... .......++.+..+. ++.|+.        ...+.+||+.+.+-.
T Consensus       580 w-~~-~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          580 A-TE-PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             S-SC-CEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             c-cc-ceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            2 00 00000000000 111122233333244 666664        346899999876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.89  E-value=4.2  Score=38.02  Aligned_cols=109  Identities=9%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             CCcEEEEEeCCC------cEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccCC--eEEEEeCCccccccccc
Q 045370           76 GTTFFVSSSLDA------TCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDG--RIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        76 ~~~~l~s~~~d~------~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  145 (350)
                      ++.+++.||.++      .+.+||+.+.+....  +.....-.+++.-.++..++.|+.++  .+.+||..+........
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            556777777543      478899888755443  22222333444434778888887654  78999988654332111


Q ss_pred             cccccceeeeccCCceEEEEecCC-e--EEEEeC--C-----CcEEEEECCCce
Q 045370          146 VGEDQHSVLKGHNGSITALAFSAS-H--LISASE--D-----KTVCLWDVTRRV  189 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~~~~-~--l~s~~~--d-----g~v~iwd~~~~~  189 (350)
                      ..     ..........++.+..+ +  ++.|+.  +     ..+.+||+.+.+
T Consensus       531 ~g-----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          531 KD-----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SS-----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CC-----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            00     01111112233444543 3  666665  2     458899988765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.70  E-value=2.6  Score=41.93  Aligned_cols=114  Identities=11%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      ....++|.+++-+.  +. |++| ....|++|++...+.+.. ..+-..+..+.....++++++|+.-..|.++..+.. 
T Consensus       882 ~~v~g~v~al~~~~--g~-Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~-  956 (1158)
T 3ei3_A          882 KEVKGAVYSMVEFN--GK-LLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM-  956 (1158)
T ss_dssp             EEESSCEEEEEEET--TE-EEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT-
T ss_pred             EEcCCcCEEEeeeC--CE-EEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC-
Confidence            34578899987653  44 4443 358899999987654442 222222433344346789999988777777654321 


Q ss_pred             cccccccccccceee--eccCCceEEEEecCCe-EEEEeCCCcEEEEECCC
Q 045370          140 LEDHFIVGEDQHSVL--KGHNGSITALAFSASH-LISASEDKTVCLWDVTR  187 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~  187 (350)
                              ...+..+  ..+...++++.+-.+. ++.+..+|.|.+.....
T Consensus       957 --------~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          957 --------EGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             --------TTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             --------CCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence                    1111111  2345678888886555 88899999999987653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.60  E-value=1.3  Score=39.82  Aligned_cols=130  Identities=9%  Similarity=-0.011  Sum_probs=80.8

Q ss_pred             EEEEeCCC----C-ceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccc--cccccccccceeeeccCCc
Q 045370           89 CKVWDLGS----G-ILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLE--DHFIVGEDQHSVLKGHNGS  160 (350)
Q Consensus        89 v~vwd~~~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~  160 (350)
                      |.+-|.+.    + .....++.+.....+.++|||+++++++ .+.++.++|++.....  .........+.....-.-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            55666654    2 3445566777788999999999988766 4789999999853221  0000000001111112345


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCc----------eEEEEeccCCCceeEE-----EEEccCCeEEeeec
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRR----------VSIRRFNHKKGVVTNL-----VVIRQSSLLSEVSN  218 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~l-----~~~~~~~~l~~~~~  218 (350)
                      ....+|.++|  +.|---|..|.-|++...          ..+..+..|..+-.-.     .-.|+|++|++...
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            6778999998  445558999999998753          4666666554432211     12578999997654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.54  E-value=2.7  Score=34.69  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             CCcEEEEEeCC-------CcEEEEeCCCCceEEEEecCCc--eeEEEEcCCCcEEEEEcc------CCeEEEEeCCcccc
Q 045370           76 GTTFFVSSSLD-------ATCKVWDLGSGILIQTQVYPQA--VTAIAFHPGEQLLFAGSI------DGRIFVSPLKFLLL  140 (350)
Q Consensus        76 ~~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~  140 (350)
                      ++.+++.|+.+       ..+.+||+.+.+....-..+.+  -.+++. .++..++.|+.      -..+.+||+.+...
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            55677777764       2478889888765544221111  122222 36666666654      24588999876543


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCce
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRV  189 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~  189 (350)
                      ....        .+....... +++...+. ++.|+.+     ..+.+||+.+.+
T Consensus       188 ~~~~--------~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          188 KDLA--------PMKTPRSMF-GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEC--------CCSSCCBSC-EEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EECC--------CCCCCcccc-eEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            2210        111111111 22233344 5566543     357789987754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.42  E-value=3.1  Score=35.04  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=80.6

Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--E-----ecCCceeEEEEcCC---CcEEEEE---cc
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--Q-----VYPQAVTAIAFHPG---EQLLFAG---SI  126 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~-----~~~~~v~~~~~~~~---~~~l~~~---~~  126 (350)
                      +...-...+.++|.+ ++.++++--..|.|++++..++.....  +     ........|+++|+   +..|++.   ..
T Consensus        27 va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           27 VATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             eecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            334456678898866 667666654489999998766654322  1     12346789999995   3444443   23


Q ss_pred             CCeEEEEeCCcccccccccccccc-ceeee-ccCCceEEEEecCCe-EEEE-eC-------------CCcEEEEECCCc-
Q 045370          127 DGRIFVSPLKFLLLEDHFIVGEDQ-HSVLK-GHNGSITALAFSASH-LISA-SE-------------DKTVCLWDVTRR-  188 (350)
Q Consensus       127 dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~-l~s~-~~-------------dg~v~iwd~~~~-  188 (350)
                      ++.|.-|.+.............+. +..+. ........|.|.|++ |+.+ +.             .|.|.-.+.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            456666665532110000000010 01111 111234579999998 3333 21             244444454321 


Q ss_pred             --------eEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          189 --------VSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       189 --------~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                              ..+... +|. ....++|+|+|.+.++-
T Consensus       186 p~~nPf~~~~i~a~-G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          186 APGNPFPGSPVYSY-GHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTCSSTTCCEEEB-CCS-BCCEEEECTTCCEEEEE
T ss_pred             cCCCCCCCCeEEee-CCC-CcceEEECCCCCEEEEe
Confidence                    112221 333 35789999998877644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.27  E-value=4  Score=35.88  Aligned_cols=100  Identities=6%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee------ccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS------LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~   74 (350)
                      |+|.|||+++++-...+.|++++...+.                         ...+..+      .........|++.|
T Consensus        32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~-------------------------~~~~~~~~~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           32 LLWGPDNQIWLTERATGKILRVNPESGS-------------------------VKTVFQVPEIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCC-------------------------EEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EEEcCCCcEEEEEcCCCEEEEEECCCCc-------------------------EeEEecCCccccccCCCCceeEEEECC
Confidence            5789999977765444568887654110                         0001111      01245677898876


Q ss_pred             C---CCcEEEEEeC------------CCcEEEEeCCCC--c-----eEEE-Ee--cCCceeEEEEcCCCcEEEEEc
Q 045370           75 G---GTTFFVSSSL------------DATCKVWDLGSG--I-----LIQT-QV--YPQAVTAIAFHPGEQLLFAGS  125 (350)
Q Consensus        75 ~---~~~~l~s~~~------------d~~v~vwd~~~~--~-----~~~~-~~--~~~~v~~~~~~~~~~~l~~~~  125 (350)
                      .   ++.+.++-+.            ...|.-+++..+  .     .+.. +.  .......|+|.|+|.++++.+
T Consensus        87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            4   4554444432            234555554322  1     1111 22  123478999999998777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.27  E-value=2.5  Score=42.65  Aligned_cols=196  Identities=8%  Similarity=0.084  Sum_probs=92.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCccccccccccccccc-------------cccccEEEeeccccccceeeeccc----cCC
Q 045370            4 SDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD-------------QLDQRLIEMELRSLRSLLHYSLEH----KSS   66 (350)
Q Consensus         4 s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~h----~~~   66 (350)
                      +|..+.+|--. ..++.|||+++..+.........-             -....+++++......+...+..|    ...
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q  152 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQ  152 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCe
Confidence            56666665543 577888888754333222221100             012344444433222333333333    344


Q ss_pred             ceEEEEeeCCCcEEEEEe-------CCCcEEEEeCCCCceEEEEecCCceeEEEEc--CC-CcEEEEEcc---CCeEEEE
Q 045370           67 VTGLLTISGGTTFFVSSS-------LDATCKVWDLGSGILIQTQVYPQAVTAIAFH--PG-EQLLFAGSI---DGRIFVS  133 (350)
Q Consensus        67 v~~~~~~~~~~~~l~s~~-------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg~i~i~  133 (350)
                      |..-..++ +..+++..|       -.|.+.+|..+.+.....-+|......+...  +. ...++.+..   .+.+++.
T Consensus       153 IinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~  231 (1630)
T 1xi4_A          153 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  231 (1630)
T ss_pred             eEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEE
Confidence            55544444 344444322       3477888887755432222232222222221  11 112222211   2688998


Q ss_pred             eCCccccccccccccccceeee---ccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCcee
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLK---GHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVT  202 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  202 (350)
                      ++........ ....+.+..+.   ....-..++..++..  +..-+.-|.|++||+.++.++..-.....+|.
T Consensus       232 Ei~~~~~~~~-~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          232 EVGTPPTGNQ-PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             ecCCCccCCC-CCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence            8865311100 00001111111   123445567777765  66777889999999999988765443333333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.15  E-value=4.2  Score=35.75  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------cCCceeEEEEcCC---CcEEEEEc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---------YPQAVTAIAFHPG---EQLLFAGS  125 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~---~~~l~~~~  125 (350)
                      -...+.++|.+ ++.++++-...+.|.+++..++.......         ....+..|+|+|+   +..|+++.
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            45667898866 66766654433468888876565433221         1345679999995   55555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.96  E-value=3.2  Score=33.93  Aligned_cols=63  Identities=5%  Similarity=-0.006  Sum_probs=38.9

Q ss_pred             CCcEEEEEeCC----CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCccc
Q 045370           76 GTTFFVSSSLD----ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~  139 (350)
                      ++.+++.|+.+    ..+.+||+.+++....-.  ....-.+++.. ++..++.|+.+      ..+.+||..+..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            55677777765    568889998886554422  22222222222 66677777654      468889887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.90  E-value=3.4  Score=34.02  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=55.5

Q ss_pred             CCcEEEEEeCC--------CcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEcc-C-----CeEEEEeCCccc
Q 045370           76 GTTFFVSSSLD--------ATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSI-D-----GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~  139 (350)
                      ++.+++.|+.+        ..+.+||+.+++....-.  ....-.+++. .++..++.|+. +     ..+.+||..+..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            55677777743        458899998876443322  2222223333 35666677765 2     468889887654


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe-EEEEeCCC-----cEEEEECCCce
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDK-----TVCLWDVTRRV  189 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg-----~v~iwd~~~~~  189 (350)
                      .....        .+........++. ..+. ++.|+.++     .+.+||+.+.+
T Consensus       177 W~~~~--------~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          177 WKELA--------PMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEECC--------CCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEECC--------CCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            32211        1111111112222 3334 66666544     58899998764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.71  E-value=3.6  Score=33.78  Aligned_cols=104  Identities=6%  Similarity=-0.013  Sum_probs=54.5

Q ss_pred             CCcEEEEEeC----C-----CcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccc
Q 045370           76 GTTFFVSSSL----D-----ATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~----d-----~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  139 (350)
                      ++.+++.|+.    +     ..+.+||+.+.+....-  .....-.+++.. ++..++.|+.+     ..+.+||..+..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            5566777765    2     46888999887654432  111112222222 56666776643     468888887644


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe-EEEEeCC-----CcEEEEECCCce
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASED-----KTVCLWDVTRRV  189 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d-----g~v~iwd~~~~~  189 (350)
                      .....        .+........++.+ .+. ++.|+.+     ..+.+||+.+.+
T Consensus       149 W~~~~--------~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          149 WHLVA--------PMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             EEECC--------CCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EeECC--------CCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            32211        11111111122223 334 6666654     468899988764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.40  E-value=4  Score=33.62  Aligned_cols=63  Identities=13%  Similarity=0.191  Sum_probs=36.6

Q ss_pred             CCcEEEEEeC------CCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccC-----CeEEEEeCCccc
Q 045370           76 GTTFFVSSSL------DATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSID-----GRIFVSPLKFLL  139 (350)
Q Consensus        76 ~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  139 (350)
                      ++.+++.|+.      -..+.+||+.+.+....-.  ....-.+++.. ++..++.|+.+     ..+.+||+.+..
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            5567777764      2358999999876554422  22222233332 56666776543     357788877543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.35  E-value=4.1  Score=33.58  Aligned_cols=110  Identities=5%  Similarity=-0.011  Sum_probs=58.5

Q ss_pred             CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEc--cC--CeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGS--ID--GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      ..|+..++..++......  ..  +..|++++..|+-..  .+  ..|+..++..           .....+..+..   
T Consensus        88 ~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-----------s~~~~lt~~~~---  149 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-----------EEKKKIKNHYL---  149 (302)
T ss_dssp             EEEEEEETTSCCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-----------CCCEEEESSCC---
T ss_pred             CeEEEEeCCCCcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-----------CCeEEEeCCCc---
Confidence            357777777665333222  22  236777888877665  33  4455445442           11223333322   


Q ss_pred             EEEecCCe--EE-EEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          163 ALAFSASH--LI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       163 ~~~~~~~~--l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                       ..+++++  |+ +......|+..++..+.....+.   +... ..++|++.+|+-....
T Consensus       150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          150 -FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             -CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred             -eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence             3345555  44 43346788888987765443333   2222 3467999888766544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.97  E-value=11  Score=37.64  Aligned_cols=133  Identities=7%  Similarity=0.023  Sum_probs=77.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecC--CceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYP--QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ..++-... ..|++.+...+..+..+..+  ..|...+.+  +..++.++ ++.+.++++..+....        ... .
T Consensus       484 ~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~--------~~~-~  550 (1158)
T 3ei3_A          484 QQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQ--------ISH-T  550 (1158)
T ss_dssp             TEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEE--------EEE-E
T ss_pred             CeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceee--------ecc-c
Confidence            34555543 34778887665556555433  357777665  34666664 6788888776432111        011 1


Q ss_pred             ccCCceEEEEecCC--------eEEEEeC-CCcEEEEECCCceEEEEecc-CCCceeEEEEEc--cCCeEEeeecCcccc
Q 045370          156 GHNGSITALAFSAS--------HLISASE-DKTVCLWDVTRRVSIRRFNH-KKGVVTNLVVIR--QSSLLSEVSNCQRKL  223 (350)
Q Consensus       156 ~~~~~i~~~~~~~~--------~l~s~~~-dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~~--~~~~l~~~~~~~~~~  223 (350)
                      .-...|.|+++.|.        .++.|.. |++|+|+++.+.+.+....- ......++.+..  ...+|..|-.++.++
T Consensus       551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~  630 (1158)
T 3ei3_A          551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALF  630 (1158)
T ss_dssp             ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence            22457999998752        1888886 99999999998776654331 122445554442  224566565555443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.05  E-value=2.6  Score=37.91  Aligned_cols=109  Identities=13%  Similarity=0.080  Sum_probs=62.9

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      +.++|||++++.++. +.++.|+|+++.......          .+.     .....+.....-.......+|.+ ++..
T Consensus       328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~----------k~~-----~~~~~~~ae~e~GlGPlHt~Fd~-~G~a  391 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG----------KLA-----DPRDVIVGEPELGLGPLHTTFDG-RGNA  391 (638)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT----------CCS-----CGGGGEEECCBCCSCEEEEEECS-SSEE
T ss_pred             eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc----------ccc-----CcccceEeeccCCCcccEEEECC-CCce
Confidence            357999999877664 889999999842211000          000     00111111112234445566755 5565


Q ss_pred             EEEEeCCCcEEEEeCCCC----------ceEEEEecCCceeEEEE------cCCCcEEEEEc
Q 045370           80 FVSSSLDATCKVWDLGSG----------ILIQTQVYPQAVTAIAF------HPGEQLLFAGS  125 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~~~~  125 (350)
                      ..|-.-|..|..|++...          ..+..+.....+-.+..      .|+|++|++..
T Consensus       392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            666778999999998753          34444553334444443      56888888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.69  E-value=11  Score=35.44  Aligned_cols=137  Identities=10%  Similarity=0.158  Sum_probs=81.0

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ec-----CCceeEEEEcCCCcEEEEEccCCeEEEEeCCcc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VY-----PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL  138 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  138 (350)
                      ..|.++...+ ++. +..|+.+ -|..++..+++..... ..     ...|.++..++++..|..|+. +-+..+|..+.
T Consensus       146 ~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTK-DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECT-TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcC-CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            3466665543 344 3445544 4778888776543321 11     123788888887777777764 45778887643


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEec-------cCCCceeEEEEEccC
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRFN-------HKKGVVTNLVVIRQS  210 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~  210 (350)
                      .....        ..+  ....|.++...+++ |..|+.+ -+.++|..+++......       .....|.++....+|
T Consensus       222 ~~~~~--------~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g  290 (758)
T 3ott_A          222 QIKQT--------EAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH  290 (758)
T ss_dssp             EEEEE--------EEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred             eEEec--------cCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence            32110        011  12458888888888 7777754 58889887654322111       112358888887777


Q ss_pred             CeEEee
Q 045370          211 SLLSEV  216 (350)
Q Consensus       211 ~~l~~~  216 (350)
                      .+-+.+
T Consensus       291 ~lWiGT  296 (758)
T 3ott_A          291 NIWLGT  296 (758)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            766633

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.22  E-value=7.2  Score=32.50  Aligned_cols=158  Identities=9%  Similarity=0.037  Sum_probs=85.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeC
Q 045370            6 DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSL   85 (350)
Q Consensus         6 dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   85 (350)
                      +..+++..+.+|.|+--.+.......                    ..+.....+.. .+.+..+.... ....++..+.
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~--------------------r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~  165 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNR--------------------SGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSA  165 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCC--------------------SSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEET
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhccc--------------------cCceEEEEECC-CCEEEEEEEec-CCCEEEEEEC
Confidence            46788999999999988776211000                    00111122223 45566655544 3455777778


Q ss_pred             CCcEEEEeCC--C---------CceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           86 DATCKVWDLG--S---------GILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        86 d~~v~vwd~~--~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .|.+..+...  .         |.....+.....|.++...+.+.+++.++..|.++.-.+........-. .......+
T Consensus       166 ~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~-~G~~~~~l  244 (327)
T 3uc1_A          166 NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG-KGVLTVMY  244 (327)
T ss_dssp             TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEESSCC
T ss_pred             CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC-CcEEEEEe
Confidence            8888777665  2         1111123345567777666667789999999999988776543321100 01111122


Q ss_pred             eccCCceEEEEe-cCCe-EEEEeCCCcEEEEECC
Q 045370          155 KGHNGSITALAF-SASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       155 ~~~~~~i~~~~~-~~~~-l~s~~~dg~v~iwd~~  186 (350)
                      ....+.+..+.. .++. ++..+.+|.+.-++..
T Consensus       245 ~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          245 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             CTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             cCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            221233444333 3333 6666777777666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.06  E-value=0.71  Score=38.80  Aligned_cols=110  Identities=9%  Similarity=0.057  Sum_probs=62.9

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEe--eCCCcEEEEE-e
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTI--SGGTTFFVSS-S   84 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~-~   84 (350)
                      .+++.++.||.|.-.|..++..               .|.....           ...++......  +.++..++.. +
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~---------------~W~~~~~-----------~~~p~~~~~~~~~~~~~~~~vv~p~   64 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI---------------IWSIEPE-----------NFQPLIEIQEPSRLETYETLIIEPF   64 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE---------------EEEECGG-----------GSCCSEECCCSCTTTSSEEEEECCS
T ss_pred             CEEEEEeCCCeEEEEECCCCcE---------------EEEecCC-----------ccCCcEEecCCccccCCcEEEEEEC
Confidence            4788899999999999874321               1111111           00111111000  1123333333 6


Q ss_pred             CCCcEEEEeCCCCceEEEEecCCceeE--EEEc-----------CCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           85 LDATCKVWDLGSGILIQTQVYPQAVTA--IAFH-----------PGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~~~v~~--~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      .||.|..++..+|.....+..+..+..  +...           ..+..+++|+.+|.+...|+.+++....
T Consensus        65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            899999999988865544442221110  1111           1467889999999999999998776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.22  E-value=15  Score=34.62  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=78.2

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-----YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      .|.++.. . ++. +..++.+ -|..+|..+++......     ....|.++..++++.+.+ |+.+ -+..++......
T Consensus       104 ~i~~i~~-~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~  177 (758)
T 3ott_A          104 DVRTMAL-Q-GDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF  177 (758)
T ss_dssp             CEEEEEE-E-TTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred             eEEEEEe-c-CCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCce
Confidence            4666543 3 443 5555655 58889988766543311     134578888877776554 4444 477787664332


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                      .... ...    ........|.++...+++  |..|.. +-|..+|..+++...........|.++...++|.+.+.+
T Consensus       178 ~~~~-~~~----~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          178 EGIP-LPV----HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             EEEC-CCC----CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE
T ss_pred             EEec-CCC----ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe
Confidence            1100 000    000012358888887653  666664 468889988765432211123457888888888877744

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.06  E-value=13  Score=32.83  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CceeEEEEcCCCc-EEEEEccCCeEEEEeCCccccccccccccccceeee----ccCCceEEEEecCC----e--EEEEe
Q 045370          107 QAVTAIAFHPGEQ-LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK----GHNGSITALAFSAS----H--LISAS  175 (350)
Q Consensus       107 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~----~--l~s~~  175 (350)
                      .....|+|.|++. .++++...|.|++++........... ....+ ...    ........|+++|+    +  +++-+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~-~~~~~-~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL-DIHKL-VQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE-ECTTT-BCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec-CCcce-eccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence            4567899999996 56666778999999753211110000 00000 111    12467889999997    2  23222


Q ss_pred             C--C----------CcEEEEECCC----------ceEEEEec--cCCCceeEEEEEccCCeEEeeec
Q 045370          176 E--D----------KTVCLWDVTR----------RVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       176 ~--d----------g~v~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      .  +          ..|.-|.+..          .+.+..+.  ........|+|.|||.+.++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1  1          1343354431          23444443  12234688999999987775554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.95  E-value=12  Score=36.50  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV  104 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  104 (350)
                      .+.+++.. ++..++++-+.|+++|+|++.+++++....
T Consensus       237 ~~~~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeec-CCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45566553 466789999999999999999999988753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=85.82  E-value=14  Score=30.76  Aligned_cols=51  Identities=6%  Similarity=0.124  Sum_probs=29.2

Q ss_pred             CCcEEEEEeC-C---------CcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccC
Q 045370           76 GTTFFVSSSL-D---------ATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        76 ~~~~l~s~~~-d---------~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                      ++.+++.|+. +         ..+.+||+.+.+......   ....-.+++. .++..++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            4567777765 2         468899998876544322   1111222222 467777777754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.37  E-value=14  Score=30.22  Aligned_cols=105  Identities=10%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CCCcEEEEEeC----CC-------cEEEEeCCCCceEEEEecCC--ceeEEEEcCCCcEEEEEccC--------CeEEEE
Q 045370           75 GGTTFFVSSSL----DA-------TCKVWDLGSGILIQTQVYPQ--AVTAIAFHPGEQLLFAGSID--------GRIFVS  133 (350)
Q Consensus        75 ~~~~~l~s~~~----d~-------~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--------g~i~i~  133 (350)
                      .++.+++.|+.    ++       .+.+||..+++....-..+.  .-.+++.. ++..++.|+.+        ..+.+|
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEE
Confidence            35677777774    11       27788888876543321111  11222222 56666666632        468888


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeC-C-----CcEEEEECCCce
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASE-D-----KTVCLWDVTRRV  189 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~-d-----g~v~iwd~~~~~  189 (350)
                      |..+......   .     .+....... +++...+. ++.|+. +     ..+.+||+.+.+
T Consensus       123 d~~~~~W~~~---~-----~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          123 DRLSFKWGES---D-----PLPYVVYGH-TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             ETTTTEEEEC---C-----CCSSCCBSC-EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCCCCcEeEC---C-----CCCCcccce-eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            8876543211   0     111111111 22233344 666665 2     468999998754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.47  E-value=17  Score=30.52  Aligned_cols=111  Identities=11%  Similarity=0.022  Sum_probs=58.5

Q ss_pred             ceeEEEEcCCCcEEEEEc-cCCeEEEEeCCccccccc-cc-------cccccceeeeccCCceEEEEecCCe-EEEEeCC
Q 045370          108 AVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDH-FI-------VGEDQHSVLKGHNGSITALAFSASH-LISASED  177 (350)
Q Consensus       108 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~d  177 (350)
                      ....++|+|++.++++=. .|+.-.+.-+..+..... ..       ....++..+..+......++|.... ++..-..
T Consensus       203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~  282 (347)
T 3das_A          203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRG  282 (347)
T ss_dssp             BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTT
T ss_pred             CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccC
Confidence            456899999876555432 233222222222221110 00       0112233333333466777877655 4444455


Q ss_pred             CcEEEEECCCceE----EEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          178 KTVCLWDVTRRVS----IRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       178 g~v~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      +.|....+.....    ...+....+.+..|+..|||.++++.++
T Consensus       283 ~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~  327 (347)
T 3das_A          283 ERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSN  327 (347)
T ss_dssp             CSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred             CEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcC
Confidence            6676666655432    1223334567999999999998876654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.17  E-value=17  Score=31.95  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             CeecCCCC-EEEEEeCCCcEEEEeCc
Q 045370            1 MVFSDDGF-LLISGSDDGMICVWSMT   25 (350)
Q Consensus         1 i~~s~dg~-~l~sg~~dg~i~vwd~~   25 (350)
                      |+|.|||. .|+.+...|.|++++..
T Consensus        19 ~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           19 ALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             EECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             EEECCCCCeEEEEEeCCceEEEEeCC
Confidence            57899996 45556678999999754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.07  E-value=22  Score=29.88  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=37.2

Q ss_pred             cCCceeEEEEcC-------CCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEe
Q 045370          105 YPQAVTAIAFHP-------GEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISAS  175 (350)
Q Consensus       105 ~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~  175 (350)
                      +...+..+.|..       ++.++++.-..+.|...++.......     ..  ..+......+..+++.|++ |+.++
T Consensus       269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~-----~~--~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTE-----DG--RILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-----EE--EESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEee-----eE--EcccCCCCceeEEEECCCCcEEEEE
Confidence            334566777764       46676666667788777776322110     00  0122234578889999988 55543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=80.90  E-value=21  Score=28.88  Aligned_cols=158  Identities=12%  Similarity=0.043  Sum_probs=88.6

Q ss_pred             ccCCceEEEEeeC-CCcEEEEEeCCCcEEEEeCCCCc------eEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370           63 HKSSVTGLLTISG-GTTFFVSSSLDATCKVWDLGSGI------LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        63 h~~~v~~~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                      ....|..+.. .. +..+++..+.+|.++-..+..-.      ....+...+.+..+........++..+..|.+..++.
T Consensus        66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~  144 (276)
T 3no0_A           66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSV  144 (276)
T ss_dssp             TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred             CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence            4566776644 32 34678899999999988865421      1112344566776666666678888888999988876


Q ss_pred             CccccccccccccccceeeeccCCceEEEE-ecCCe-EEEEeCCCcEEEEECCC-------ceEEEEeccCCCceeEEEE
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALA-FSASH-LISASEDKTVCLWDVTR-------RVSIRRFNHKKGVVTNLVV  206 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~  206 (350)
                      ..-...... ........+... ..|..+. ..++. ++..+..|.++...+..       ++-+..+. ..+.+..+..
T Consensus       145 ~eip~~gR~-a~Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~  221 (276)
T 3no0_A          145 REVPPSTPG-ARGVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIP  221 (276)
T ss_dssp             GGSCBCCTT-CCCEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEE
T ss_pred             hhCCCcCCC-CCCEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEE
Confidence            543221110 011111123222 4455554 34443 88888999988887642       22222332 2344555444


Q ss_pred             EccCCeEEeeecCccccc
Q 045370          207 IRQSSLLSEVSNCQRKLK  224 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~~~~  224 (350)
                      ......++..+..++.++
T Consensus       222 ~~~~~~i~~~t~~G~~ir  239 (276)
T 3no0_A          222 IKEEVELLITTKNGKAFY  239 (276)
T ss_dssp             ESSEEEEEEEETTSCEEE
T ss_pred             eCCCCEEEEEcCCCeEEE
Confidence            333344444666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +  + DG L+ S S+D  + VW +     +     H               S  S    S
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
              KS   G         F +S S D T K+WD+ +G+ + T   +   V  + FH G +
Sbjct: 209 ETKKSGKPG--------PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 260

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASED 177
            + + + D  + V   K           +     L  H   +T+L F     ++++ S D
Sbjct: 261 FILSCADDKTLRVWDYK----------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 178 KTVCLWD 184
           +TV +W+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 29/241 (12%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD---------------QLDQRL 45
           ++F     +++S S+D  I VW           L  H+D                    +
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81

Query: 46  IEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QV 104
                         ++         ++I       VS+S D T K+W++ +G  ++T   
Sbjct: 82  TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141

Query: 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK----FLLLEDH--------FIVGEDQHS 152
           + + V  +  +    L+ + S D  + V  +        L +H        +       S
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201

Query: 153 VLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSL 212
           + +               L+S S DKT+ +WDV+  + +         V  ++       
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 213 L 213
           +
Sbjct: 262 I 262

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 13/169 (7%)

Query: 58  HYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHP 116
             +         ++  +   T   S S D T +VW + +       + +   V  I++ P
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 117 GEQLLFAGSIDGRIFVSPLKFLLL-----EDHFIVGEDQHS-----VLKGHNGSITALAF 166
                      G       K          D  I   D  +      L GH+  +  + F
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 167 SAS--HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL 213
            +    ++S ++DKT+ +WD   +  ++  N  +  VT+L   + +  +
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 8e-08
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 150 QHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNL 204
           +   L GH   +T + F    S ++SASED T+ +WD       R        V ++
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 37/213 (17%)

Query: 54  RSLLHYSLE-HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTA 111
           R    Y+L  H+S VT +       +  VS+S DAT KVWD  +G   +T + +  +V  
Sbjct: 6   RPPEKYALSGHRSPVTRV-IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 112 IAFHPG--------------------------------EQLLFAGSIDGRIFVSPLKFLL 139
           I+F                                        +   +G   VS  +   
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 140 LEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHK 197
           ++   +          GH   +  +  +   + + S S D+TV +W V  +         
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 198 KGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPS 230
           + VV  +    +SS  S       + KK   P 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPG 217

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 18  MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77
                 +  L       +  S   D      ++R       ++  H+S +  +       
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAI-CFFPNG 238

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHPGEQLLFAGSIDGRIFVSP 134
             F + S DATC+++DL +   + T  +      +T+++F    +LL AG  D    V  
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWD 184
                         D+  VL GH+  ++ L  +     + + S D  + +W+
Sbjct: 299 AL----------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 4e-13
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 79  FFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
            FVS + DA+ K+WD+  G+  QT   +   + AI F P       GS D    +     
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL----- 252

Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSAS--HLISASEDKTVCLWDVTRRVSIRRFN 195
               D     E            IT+++FS S   L++  +D    +WD  +        
Sbjct: 253 ---FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

Query: 196 HKKGVVTNLVVIRQSSLL 213
                V+ L V      +
Sbjct: 310 GHDNRVSCLGVTDDGMAV 327

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 6e-10
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 27/133 (20%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + F  +G    +GSDD    ++ +    +  +    +                       
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----------------------- 268

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQ 119
                 +T + + S      ++   D  C VWD            +   V+ +       
Sbjct: 269 --IICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 120 LLFAGSIDGRIFV 132
            +  GS D  + +
Sbjct: 326 AVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 153 VLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQS 210
            L+GH   I A+ +      L+SAS+D  + +WD      +     +   V         
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 211 SLLSEVSNCQRKLKKD 226
           + ++           +
Sbjct: 110 NYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 28/93 (30%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + FS  G LL++G DD    VW   +                                  
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALK---------------------------ADRAGVL 308

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWD 93
             H + V+  L ++       + S D+  K+W+
Sbjct: 309 AGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 30/198 (15%), Positives = 48/198 (24%), Gaps = 20/198 (10%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           M +  D  LL+S S DG + +W        T+  +H        ++        + +   
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDS-----YTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
                     L    G           T  +         Q        T   +      
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV-------------LKGHNGSITALAFS 167
                      V  L        F+ G    S                GH   I A+ F 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 168 AS--HLISASEDKTVCLW 183
            +     + S+D T  L+
Sbjct: 236 PNGNAFATGSDDATCRLF 253

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 4e-13
 Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 52/208 (25%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
            V   DG  + +GS D  + VW       +T  L+                 L S     
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDS-----ETGFLVER---------------LDSENESG 250

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP-------------Q 107
             HK SV  +   +      VS SLD + K+W+L +         P              
Sbjct: 251 TGHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS 167
            V ++A    ++ + +GS D  +     K            +   +L+GH  S+ ++A +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKK----------SGNPLLMLQGHRNSVISVAVA 359

Query: 168 AS--------HLISASEDKTVCLWDVTR 187
                        + S D    +W   +
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 26/238 (10%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + FS DG  L +G++D +I +W +           H  D           + +      +
Sbjct: 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 61  LEHKSSVTGLLTI--------------SGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP 106
           +      TG  ++               G   +  + SLD   +VWD  +G L++     
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 107 --------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL--KG 156
                    +V ++ F    Q + +GS+D  + +  L+    +            +   G
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306

Query: 157 HNGSITALAFSAS--HLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSL 212
           H   + ++A + +  +++S S+D+ V  WD      +      +  V ++ V   SSL
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 37/230 (16%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSL---L 57
           + FS+DG  L +G +            L         +++  + L      S       +
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 58  HYSLEHKSSVTGLLTISG----------------------------GTTFFVSSSLDATC 89
            +S + K   TG                                       VS S D T 
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187

Query: 90  KVWDLGSGILIQTQVYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGE 148
           ++WDL +G    T      VT +A  PG  + + AGS+D  + V   +   L +     +
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL---D 244

Query: 149 DQHSVLKGHNGSITALAFSAS--HLISASEDKTVCLWDVTRRVSIRRFNH 196
            ++    GH  S+ ++ F+     ++S S D++V LW++    +      
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 76  GTTFFVSSSLDATCKVWDLGSGI-----LIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
                +    +    +++          L ++  +   V  + F    + L  G  +   
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTT 85

Query: 131 FVSPLK----FLLLEDHFIVGED----QHSVLKGHNGSITALAFSASHLISAS 175
            V  +        L D     +D      S     +  I ++ FS      A+
Sbjct: 86  QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
              VS S D T ++WD+  G  ++     + +        ++++ +G+ DG+I V  L  
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV-SGAYDGKIKVWDLVA 247

Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWD 184
            L +     G      L  H+G +  L F    ++S+S D T+ +WD
Sbjct: 248 AL-DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 152 SVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVT 202
                 +  +  L +    ++S   D T+ +WD       R      G V 
Sbjct: 9   HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 24/207 (11%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD-----------QLDQRLIEMELR 51
              D   ++SG  D  I +W     L+    L  H+             +          
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79

Query: 52  SLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLG--SGILIQTQVYPQAV 109
              +              +L +       V+ S D +  VWD+   + I ++  +     
Sbjct: 80  WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139

Query: 110 TAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS 169
                   ++ + + S D  I V                +    L GH   I  L +   
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTS----------TCEFVRTLNGHKRGIACLQYRDR 189

Query: 170 HLISASEDKTVCLWDVTRRVSIRRFNH 196
            ++S S D T+ LWD+     +R    
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEG 216

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 1/164 (0%)

Query: 150 QHSVLKGHNGS-ITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIR 208
           Q + L+GH  S IT L F  +++I+ ++DK + ++D   +  + + +   G V  L    
Sbjct: 4   QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 209 QSSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKS 268
              L+S  ++   ++   +        + ++ ++  + +++          S +      
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 269 LFQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKH 312
                S +   G      +          +   +  H+  +   
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 58  HYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFH 115
                H ++++ + T        VS S +    +++L SG L+   +      + ++ F 
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

Query: 116 PGEQLLFAGSIDGRIFVSPLKF 137
             + L+ A   DG+ F+  L F
Sbjct: 334 G-KTLVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 109 VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA 168
                F+  + +L +GS + +  +  L+          G+  H+ +      I ++ F  
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRS---------GKLVHANILKDADQIWSVNFKG 334

Query: 169 SHLI-SASEDKTVCLWD 184
             L+ +  +D    L  
Sbjct: 335 KTLVAAVEKDGQSFLEI 351

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 5e-09
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
           L  +    +FVS+  D     W    G  I       +V +      ++ +  GS D + 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 131 FV 132
            V
Sbjct: 331 TV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 111 AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA-- 168
           ++ F    +   +   D  +             +             + S+ +   S   
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNA-----------WRTPYGASIFQSKESSSVLSCDISVDD 318

Query: 169 SHLISASEDKTVCLWDV 185
            ++++ S DK   +++V
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 29/94 (30%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + F+  G   +S   D ++  W            +                         
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-----PYGASIFQ----------------------- 302

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDL 94
            +  SSV     IS    + V+ S D    V+++
Sbjct: 303 SKESSSVLSC-DISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 8/130 (6%)

Query: 70  LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGR 129
               + G    V    DA            I T  + + V A+      + ++ G   G 
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGC 73

Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSAS--HLISASEDKTVCLWDVTR 187
           +     K   +                 +  I +         LI   E  T+ +WD+  
Sbjct: 74  V-----KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 188 RVSIRRFNHK 197
                +    
Sbjct: 129 PTPRIKAELT 138

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 31/216 (14%), Positives = 58/216 (26%), Gaps = 25/216 (11%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD----------------QLDQR 44
                DG  LI G +   + +W +     +    +  S                      
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 45  LIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV 104
                       L    +  +     + IS   T   +  LD T + WDL  G  +Q   
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 105 YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITAL 164
           +   + ++ + P  + L  G     + V  +         +      S+   + G     
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK---- 278

Query: 165 AFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGV 200
                  +S  +D  +  W      SI +      V
Sbjct: 279 -----WFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 8e-09
 Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 3/179 (1%)

Query: 153 VLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIRRF-NHKKGVVTNLVVIRQ 209
           V  GHN +ITAL+ SA    L SA  +  +  WD++  +S R F +    ++T +    +
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 210 SSLLSEVSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSL 269
             L +   +   K+       ++    + +      + L           +         
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 270 FQHMSELQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWY 328
              ++E+      + + +  D                      +      +    I   
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 114 FHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS-ASHLI 172
           + P    L  GS+D  + V  +         I G            S+ ++ +   + ++
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-------HAMSSVNSVIWLNETTIV 284

Query: 173 SASEDKTVCLWDVT 186
           SA +D  +  W+V 
Sbjct: 285 SAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQL 120
           H  ++T L + S       S+  +     WD+ +GI  +    V+   +T I       L
Sbjct: 11  HNKAITAL-SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 121 LFAGS 125
                
Sbjct: 70  FTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 24/230 (10%), Positives = 56/230 (24%), Gaps = 13/230 (5%)

Query: 108 AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS 167
           A+TA++     + LF+   +G I    +           G         H   IT +  +
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDIS---------TGISNRVFPDVHATMITGIKTT 64

Query: 168 ASH-LISASEDKTVCLWDVTR---RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL 223
           +   L + S D  + +          S    N        L V     +          +
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 224 KKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSELQQEGTPA 283
                 +       +S               +D +  +      S+ +  + +      +
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184

Query: 284 AMQMKADVNMSQRTWASQMTKHVMEINKHLQSRLLDLMQCRILWYKEIDP 333
                    +     + ++  + +  N  L            +      P
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 1  MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD 39
          +  S DG  L S   +G I  W ++  +        H+ 
Sbjct: 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 56

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 24/222 (10%), Positives = 62/222 (27%), Gaps = 42/222 (18%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +   +     +S S DG + VW    L  +  +   +S  + +                 
Sbjct: 20  VSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS---------------G 62

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-----------ILIQTQVYPQAV 109
           L H   +  +   +       ++S       + +               L+ + +   + 
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 110 TAIAFHPGE-----QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH--------SVLKG 156
            A+ +           L A  + G  ++        E + +                   
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 157 HNGSITALAFSASHLI-SASEDKTVCLWDVTRRVSIRRFNHK 197
            +   T++  S   LI +   + TV + +++    +  F  +
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ 224

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 151 HSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRR-------VSIRRFNHKKGV 200
            +  K H+  I +++   S  +S S D  + +WD            S   F HK G+
Sbjct: 7   ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 26/207 (12%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 10  LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTG 69
           L++    G   +W       +++ L  +     +         L+  +   +      T 
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE---------LQGTVESPMTPSQFATS 189

Query: 70  LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA-------VTAIAFHPGEQLLF 122
           +     G     +   + T ++ +L +   +       +       + ++ F P   LL 
Sbjct: 190 VDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 123 AGSIDGRIFV------SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISA 174
                              + +                  H+  + +L+F+     L SA
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 175 SEDKTVCLWDVTRRVSIRRFN-HKKGV 200
             D  +  WDV  +  I   N H   +
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDI 334

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 26/193 (13%), Positives = 61/193 (31%), Gaps = 16/193 (8%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           +  S+ G L+ +G ++G + +  ++ L    +    HS   +   I     S +  L   
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
               +S   +          +      +  V    S   +    +   V +++F+   + 
Sbjct: 249 AHDSNSFGCITLYETEFGERIG-----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303

Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTV 180
           L +   DG++    +K           +++ + L  H   I       +           
Sbjct: 304 LCSAGWDGKLRFWDVK----------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353

Query: 181 CLWDVTRRVSIRR 193
            ++DV       R
Sbjct: 354 GVFDVKFLKKGWR 366

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 25/203 (12%), Positives = 59/203 (29%), Gaps = 39/203 (19%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
            + +  L+ + S  G +  + +TR  +    +    D LD  + +    +L+        
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGS-------------------GILIQTQ 103
                             V++ +  T  +W                       G +    
Sbjct: 135 LSH-------------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 104 VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITA 163
              Q  T++       L+  G  +G + +S L         +   +    +  ++ SI +
Sbjct: 182 TPSQFATSVDISE-RGLIATGFNNGTVQISELST----LRPLYNFESQHSMINNSNSIRS 236

Query: 164 LAFSASHLI--SASEDKTVCLWD 184
           + FS    +   A +  +     
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCIT 259

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 103 QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT 162
               + ++  A++     +     +  + +                 Q   LK HNG +T
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV--------QVHELKEHNGQVT 55

Query: 163 ALAFSA--SHLISASEDKTVCLWD 184
            + ++   + +++   D+   +W 
Sbjct: 56  GVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 3/65 (4%)

Query: 71  LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYP---QAVTAIAFHPGEQLLFAGSID 127
              +   T       +    +++      +Q          VT + + P    +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 128 GRIFV 132
              +V
Sbjct: 73  RNAYV 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 10/113 (8%), Positives = 28/113 (24%), Gaps = 18/113 (15%)

Query: 80  FVSSSLDATCKVWDLGSGILIQTQVYPQ-AVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL 138
            V++  D    ++   S     +           +           ++D +         
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE----- 311

Query: 139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH------LISASEDKTVCLWDV 185
                         +   H  S++ ++  +          +   D  + +WDV
Sbjct: 312 ------GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 1   MVFSDDGFLLISGSDDGMI--------CVWSMTRLLKQTSELMHHSDQLDQRLIEMELRS 52
           + F  +  L+ +G D   +           S    L    +         +R   ++ ++
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 53  LRSLLHYSLE-----HKSSVTGLLTISGGT---TFFVSSSLDATCKVWDLGSG 97
                  +       HK+SV+ +  +SGG    + F ++ +D    +WD+ S 
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 28/92 (30%)

Query: 3  FSDDGFLLISGSDDGMICVWSM-TRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL 61
          ++ D   +    ++  + ++        Q  EL  H+                       
Sbjct: 15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG---------------------- 52

Query: 62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWD 93
               VTG +  +  +   V+   D    VW 
Sbjct: 53 ----QVTG-VDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 14/156 (8%), Positives = 38/156 (24%), Gaps = 4/156 (2%)

Query: 160 SITALAFSA--SHLISASEDKTVCLWDVT--RRVSIRRFNHKKGVVTNLVVIRQSSLLSE 215
            I+  A++   + +     +  V +++ +  + V +       G VT +     S+ +  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 216 VSNCQRKLKKDRMPSLEKYPQLNSLSMEMVILLQSCFFNKDDQCSINIRRTKSLFQHMSE 275
               +            K   +          ++     K        R     +     
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 276 LQQEGTPAAMQMKADVNMSQRTWASQMTKHVMEINK 311
                      +++ V        S +        K
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 26/203 (12%), Positives = 49/203 (24%), Gaps = 22/203 (10%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           M  +DDG L ++G D   + V +     K T  L   +           L          
Sbjct: 150 MRAADDGSLYVAGPDIYKMDVKTG----KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 205

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG--ILIQTQVYPQAVTAIAFHPGE 118
                                ++ L       DL +G     +     +        P +
Sbjct: 206 EFSMLYTIA--RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 119 QLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASE 176
                G    R+    LK           +   +    H  +   +AF      L     
Sbjct: 264 PNQIYGV-LNRLAKYDLK---------QRKLIKAANLDH--TYYCVAFDKKGDKLYLGGT 311

Query: 177 DKTVCLWDVTRRVSIRRFNHKKG 199
              + +++      ++      G
Sbjct: 312 FNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 17/212 (8%), Positives = 47/212 (22%), Gaps = 39/212 (18%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
                  +I  +    + V                           ++ S        + 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVV--------------------------DVASDTVYKSCVMP 37

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQA-------VTAIAFH 115
            K      +      T +V ++        DL +                   + + A  
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 116 PGEQLLFAGSIDG----RIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS--AS 169
           P  + ++A           +V     L +       E +          +  +  +   S
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 170 HLISASEDKTVCLWDVTRRVSIRRFNHKKGVV 201
             ++  +   + +      V++   N  +   
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY 189

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (122), Expect = 7e-08
 Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 8/140 (5%)

Query: 70  LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           +        F V+        + D  +  +        AV         + LF    DG+
Sbjct: 25  MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGK 84

Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT 186
           + +  L    +++   V E +  +        T+          +  A       + D  
Sbjct: 85  VNMIDLW---MKEPTTVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 187 RRVSIRRFNHKKGVVTNLVV 206
                +  + +         
Sbjct: 140 TLEPKKIQSTRGMTYDEQEY 159

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 153 VLKGHNGSI-TALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNL 204
           VLKGH+  + T L F  + ++S S+D T+ +W       +R      G V + 
Sbjct: 11  VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 1   MVFSDDGFLLISGSDDGMICVW---------SMTRLLKQTSELMHHSDQL----DQRLIE 47
                DG  ++SGS D  I VW         ++T     TS +    + L        ++
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240

Query: 48  MELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQ 107
           +        L          + +  +     F ++SS D T K+WDL +G  I+  V  +
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 108 ------AVTAIAFHPGEQLLFAGSIDG 128
                  V  I     + +   GS +G
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 23/214 (10%)

Query: 2   VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD-----------QLDQRLIEMEL 50
                G  ++SGSDD  + VWS     K    L+ H+             +         
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80

Query: 51  RSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVT 110
                            + +  +       VS S DAT +VWD+ +G  +   +   A  
Sbjct: 81  VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140

Query: 111 AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH 170
               + G +++     D  + V   +           E     L+GH   + +L F   H
Sbjct: 141 RCVQYDGRRVVSGAY-DFMVKVWDPET----------ETCLHTLQGHTNRVYSLQFDGIH 189

Query: 171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNL 204
           ++S S D ++ +WDV     I      + + + +
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
              VS SLD + +VWD+ +G  I T    Q++T+      + +L +G+ D  + +  +  
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDI-- 244

Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN 195
                              H  ++T L F+ + +I++S+D TV LWD+     IR   
Sbjct: 245 -----KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKF 137
              VS + D   KVWD  +   + T +        +       + +GS+D  I V  ++ 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

Query: 138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNH 196
                      +    L GH    + +    + L+S + D TV +WD+     ++    
Sbjct: 207 ----------GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 147 GEDQ-HSVLKGHNGSITALAFSASHLISASEDKTVCLWDVT 186
           G D+    + GHN  ITAL  +   LIS S D  +  W  +
Sbjct: 1   GHDEVLKTISGHNKGITALTVN--PLISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 110 TAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA- 168
            A      E L+  GS+D  IF+  +K                 L  H   +  L +   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVK---------RPMKIIKALNAHKDGVNNLLWETP 269

Query: 169 SHLISASEDKTVCLWDV 185
           S L+S+  D  +  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 7e-04
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 28/93 (30%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
                +  L+ +GS D  I ++S                          ++    ++   
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYS--------------------------VKRPMKIIKAL 254

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWD 93
             HK  V  LL  +  T   VSS  DA  K W+
Sbjct: 255 NAHKDGVNNLLWETPST--LVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 16/198 (8%), Positives = 45/198 (22%), Gaps = 31/198 (15%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRS-LRSLLHY 59
             F  D   L   S   +                ++ S ++  +   + L     +    
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVV--------LNFSFEVVSKPFVIPLIPGSPNPTKL 235

Query: 60  SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
                +S  G   ++         ++D       +        +      +         
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP------LESSILIYSVPVHGEFAA 289

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASED 177
                   G +    +              +   +     ++T L  SA    ++   +D
Sbjct: 290 YYQGAPEKGVLLKYDV--------------KTRKVTEVKNNLTDLRLSADRKTVMVRKDD 335

Query: 178 KTVCLWDVTRRVSIRRFN 195
             +  + + +    R   
Sbjct: 336 GKIYTFPLEKPEDERTVE 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 153 VLKGHNGSITALAFS--ASHLISASEDKTVCLWDVTR----RVSIRRFNHKKGV 200
           + +     I+ +      S L+  S D ++ ++           ++   +K  +
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 21/162 (12%), Positives = 45/162 (27%), Gaps = 12/162 (7%)

Query: 86  DATCKVWDLGSGILIQTQVYPQA-----VTAIAFHPGEQLLFAGSIDGRIFV-----SPL 135
           ++  + + L         +                  ++     SIDGR+ V        
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRR 193
            +   +         +         + ++ FS  H  L +A  D  +  W++  R  I+ 
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 194 FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSLEKYP 235
           F          +    + L    S+   K       ++E   
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 25/125 (20%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQAV----------------TAIAFHPGEQLL 121
             +  SS+D    V                A                  +I F P  + L
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266

Query: 122 FAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVC 181
           +    DG I    L+           +   +  K +  S+  +A S + L  A+ D T  
Sbjct: 267 YTAGSDGIISCWNLQ---------TRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFK 317

Query: 182 LWDVT 186
                
Sbjct: 318 TNAAI 322

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 13/143 (9%), Positives = 37/143 (25%), Gaps = 13/143 (9%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
            +   +       S DG + V          +     + +  +              +  
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL-------------NLK 246

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
             + +     +  S    F  ++  D     W+L +   I+        + +     + +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306

Query: 121 LFAGSIDGRIFVSPLKFLLLEDH 143
           L   + D     +      +E +
Sbjct: 307 LCLATSDDTFKTNAAIDQTIELN 329

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 63  HKSSVTGLLTISGGTTFFVSSSLDATCKVWDL----GSGILIQTQVYPQAVTAIAFHP-G 117
            K  ++ +  I    +  + +S D +  V+       +  L+Q+  Y   +    F    
Sbjct: 10  PKDYISDI-KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 118 EQLLFAGS 125
           +  ++ G+
Sbjct: 69  DLQIYVGT 76

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 21/214 (9%), Positives = 47/214 (21%), Gaps = 24/214 (11%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
           + ++ DG  L     D  +       L++        S + +       L          
Sbjct: 140 LAWARDGSKLYGLGRDLHVMDPEAGTLVED---KPIQSWEAETYAQPDVLAVWNQHESSG 196

Query: 61  LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQL 120
           +      T              ++        DL +G +   +V    V   +       
Sbjct: 197 VMATPFYTA----RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 121 LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDK 178
             A      +    L+                       S  ++  S   S +       
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV-----------PLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 179 TVCLWDVTRRVSIRRF----NHKKGVVTNLVVIR 208
            +  +D        +     N    + +  +  R
Sbjct: 302 DLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 13/124 (10%), Positives = 28/124 (22%), Gaps = 11/124 (8%)

Query: 79  FFVSSSLDATCKVWDLGSGILIQTQVYPQA---VTAIAFHP-GEQLLFAGSIDGRIFVSP 134
           + ++ +      V D     + +      A          P G       +    +    
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK-- 60

Query: 135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA--SHLISASEDKTVCLWDVTRRVSIR 192
              + L     +G    S  +    S+   A S     L        + L     + +  
Sbjct: 61  ---IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

Query: 193 RFNH 196
               
Sbjct: 118 ALYD 121

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/236 (7%), Positives = 51/236 (21%), Gaps = 30/236 (12%)

Query: 1   MVFSDDG-FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHY 59
            + +  G     + +    +    +          +   ++  + L    L      L  
Sbjct: 39  PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98

Query: 60  SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ 119
                                          ++D  +    +    P+ +T +A+     
Sbjct: 99  Y-----------ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--------- 170
            L+    D  +       L+  +   +   +       +         +S          
Sbjct: 148 KLYGLGRDLHVMDPEAGTLV--EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 171 ------LISASEDKTVCLWDV-TRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC 219
                     +    +   D+ T  +++R          +  V    +      N 
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 14/142 (9%), Positives = 36/142 (25%), Gaps = 7/142 (4%)

Query: 62  EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQ------AVTAIAFH 115
           +   +    +   GG   + + +   +    DL +G  +             ++   A  
Sbjct: 31  DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90

Query: 116 PGEQLLFAGSIDGRIFVSPLKFLLLEDHFI-VGEDQHSVLKGHNGSITALAFSASHLISA 174
           P  + L       R+ ++  +                         IT LA++       
Sbjct: 91  PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150

Query: 175 SEDKTVCLWDVTRRVSIRRFNH 196
              + + + D      +     
Sbjct: 151 GLGRDLHVMDPEAGTLVEDKPI 172

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 7e-06
 Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 8/135 (5%)

Query: 70  LLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGR 129
           L  +     F V+        + D  S  +++      AV         + L     D R
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDAR 84

Query: 130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT 186
           I +  L          +      +        ++          +  A       + D  
Sbjct: 85  IDMIDLWAKEPTKVAEI-----KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139

Query: 187 RRVSIRRFNHKKGVV 201
                +  + +   V
Sbjct: 140 TLEPKQIVSTRGMTV 154

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQAV--TAIAFHPGEQLLFAGSIDGRIFV 132
           T   S+S D T K+W++ +  + +T      +    +     +Q L + S +G I  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 20/108 (18%)

Query: 99  LIQTQVYPQA-------VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH 151
             QT ++P            +   P    +   +    ++  P+                
Sbjct: 3   FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVG----------SLTDT 51

Query: 152 SVLKGHNGSITALAFSAS--HLISASEDKTVCLWDVTRRVSIRRFNHK 197
            +   H+   T    S S  +  S      V +WD T+   I +    
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 99

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 113 AFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLI 172
            + P    + + S D  I +  +  L +E    VG                + ++   L+
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-------TRIEDQQLGIIWTKQALV 297

Query: 173 SASEDKTVCLWD 184
           S S +  +   +
Sbjct: 298 SISANGFINFVN 309

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 8/133 (6%)

Query: 2   VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL 61
            +S     L+  +  G I    ++        L       +    +         + Y  
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSS--GDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 62  EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQL 120
                   +  +      +   +      V D  +G  +        + +I      + L
Sbjct: 259 AL----DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 314

Query: 121 LFA-GSIDGRIFV 132
           L+A  + D  +++
Sbjct: 315 LYALSTGDKTLYI 327

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 18/138 (13%)

Query: 74  SGGTTFFVSSSLDATCKVWDLGSG---ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRI 130
           S      V  +        DL SG    L   +   +A  A  + PG     A       
Sbjct: 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262

Query: 131 FV-----SPLKFLLLEDHFIVGEDQHS-----VLKGHNGSITALAFSASH----LISASE 176
                             F+V  D  +       +  +  I ++  S          ++ 
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTG 321

Query: 177 DKTVCLWDVTRRVSIRRF 194
           DKT+ + D      +R  
Sbjct: 322 DKTLYIHDAESGEELRSV 339

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 10/116 (8%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 3   FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE 62
           +   G+  ++           + +  +   +         + ++ ++ ++   L     E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA------SRFVVVLDAKTGERL--AKFE 297

Query: 63  HKSSVTGL-LTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHP 116
               +  + ++       +  S+ D T  + D  SG  +++          I    
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 77  TTF-FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFV 132
           +TF ++++S      V D+ S  +  T             P G ++  A +    + +
Sbjct: 1   STFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSI 58

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 6/105 (5%)

Query: 18  MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGT 77
                 +    + T   + + D+    +  ++  + +  +   +       G+     G 
Sbjct: 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--ITARIPVGPDPAGIAVTPDGK 256

Query: 78  TFFVSSSLDATCKVWDLGSGILIQT-QV--YPQAV-TAIAFHPGE 118
             +V+ S   T  V D  +  +  T  V   P A    I   P +
Sbjct: 257 KVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 78  TFFVSSSLDATCKVWDL---GSGILIQTQVYPQAVTAIAFHP-GEQLLFAGSIDGRIFV 132
           T +++S       VW+L   G+  L Q    P  V  +   P    L      + R+  
Sbjct: 5   TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 78  TFFVSSSLDATCKVWDLGSGILIQTQVYPQ---AVTAIAFHP-GEQLLFAGSIDGRIFV 132
             F +   DAT +VWD+ +   +Q     +       +     G   + + S+DG +  
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 27/95 (28%)

Query: 1   MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS 60
            +   D     +   D  I VW                           + + + +  ++
Sbjct: 257 ALSWLDSQKFATVGADATIRVWD--------------------------VTTSKCVQKWT 290

Query: 61  LE-HKSSVTGLLTISGGTTFFVSSSLDATCKVWDL 94
           L+  +     +  ++ G    +S SLD T   ++L
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.49
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.26
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.24
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.97
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.95
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.8
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.75
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.63
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.56
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.51
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.47
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.92
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.71
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.51
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.46
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.72
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.03
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.2
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.12
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.9
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.34
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.97
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.68

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.1e-29  Score=213.31  Aligned_cols=151  Identities=24%  Similarity=0.254  Sum_probs=128.7

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      .+...+....+ .+...++++|+.|+.|++||+.+++.+..+. |...|++++|+|++.+|++|+.||.|++||++....
T Consensus       182 ~~~~~~~~~~~-~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         182 GHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             CCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ccceeEeeecc-ccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            34455566555 4466789999999999999999999888765 788999999999999999999999999999986432


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                      ...        .....+...|++++|+|++  |++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|++++.
T Consensus       261 ~~~--------~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         261 LMT--------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EEE--------ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccc--------cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            211        1234567789999999998  999999999999999999999999999999999999999999998887


Q ss_pred             Ccc
Q 045370          219 CQR  221 (350)
Q Consensus       219 ~~~  221 (350)
                      |+.
T Consensus       333 Dg~  335 (340)
T d1tbga_         333 DSF  335 (340)
T ss_dssp             TSC
T ss_pred             CCE
Confidence            754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5.5e-29  Score=210.10  Aligned_cols=217  Identities=18%  Similarity=0.173  Sum_probs=163.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccc-cccccccc-------ccc-E----------EEeeccccccceeeec
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSE-LMHHSDQL-------DQR-L----------IEMELRSLRSLLHYSL   61 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~-------~~~-~----------~~~~~~~~~~~~~~~~   61 (350)
                      ++|+|+|++||+|+.||+|+|||+......... ...+..+.       ++. +          ..............+.
T Consensus        64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~  143 (311)
T d1nr0a1          64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT  143 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred             EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            579999999999999999999999865432211 11111111       111 1          1111112234556678


Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                      +|...|.+++|+|.+...+++|+.|+.|++||+++++....+ .|..+|.++.|+|+++++++++.||.|++||...+..
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc
Confidence            899999999997755557899999999999999999888776 4788999999999999999999999999999986543


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCCeEEeee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~  217 (350)
                      ....   ........+|...|++++|+|++  |++|+.||.|+|||+++++++.++..|.. ....+.+.+++..|++++
T Consensus       224 ~~~~---~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s  300 (311)
T d1nr0a1         224 TGVF---EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  300 (311)
T ss_dssp             EEEC---BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             cccc---cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEE
Confidence            3221   11122455799999999999998  99999999999999999999999986644 344456667777888887


Q ss_pred             cCc
Q 045370          218 NCQ  220 (350)
Q Consensus       218 ~~~  220 (350)
                      .++
T Consensus       301 ~dG  303 (311)
T d1nr0a1         301 ANG  303 (311)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-29  Score=218.18  Aligned_cols=188  Identities=15%  Similarity=0.111  Sum_probs=155.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|||||++||+|+.||.|+|||.+..                         .......+.+|.++|.+++|+| ++++|
T Consensus        13 ~~~s~dg~~la~~~~~~~i~iw~~~~~-------------------------~~~~~~~l~gH~~~V~~l~fsp-~~~~l   66 (371)
T d1k8kc_          13 HAWNKDRTQIAICPNNHEVHIYEKSGN-------------------------KWVQVHELKEHNGQVTGVDWAP-DSNRI   66 (371)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEETT-------------------------EEEEEEEEECCSSCEEEEEEET-TTTEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCC-------------------------CEEEEEEecCCCCCEEEEEECC-CCCEE
Confidence            589999999999999999999998721                         1234566789999999999976 77899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE---ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ---VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|+.|++|++||+.++.....+   .|...|.+++|+|+++.|++++.|+.+++|++.......      ........|
T Consensus        67 ~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~------~~~~~~~~~  140 (371)
T d1k8kc_          67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW------VCKHIKKPI  140 (371)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE------EEEEECTTC
T ss_pred             EEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccc------ccccccccc
Confidence            99999999999999987755443   467889999999999999999999999999987532211      112244578


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCC------------------ceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTR------------------RVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                      ...|.+++|+|++  |++|+.|+.|++||+..                  +..+.....|.+.|.+++|+|++++|++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence            8999999999998  99999999999999764                  245666678889999999999999999888


Q ss_pred             cCc
Q 045370          218 NCQ  220 (350)
Q Consensus       218 ~~~  220 (350)
                      .|+
T Consensus       221 ~d~  223 (371)
T d1k8kc_         221 HDS  223 (371)
T ss_dssp             TTT
T ss_pred             cCC
Confidence            764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=4.4e-29  Score=210.66  Aligned_cols=182  Identities=16%  Similarity=0.158  Sum_probs=157.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++|+|+.|+.++ ++.|.+||++                           .......+.+|...|.+++|+| ++++|
T Consensus        23 ~a~~~~g~~l~~~~-~~~v~i~~~~---------------------------~~~~~~~~~~H~~~v~~~~~sp-~g~~l   73 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GTSVYTVPVG---------------------------SLTDTEIYTEHSHQTTVAKTSP-SGYYC   73 (311)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETT---------------------------CSSCCEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEEcCCCCEEEEEe-CCEEEEEECC---------------------------CCceeEEEcCCCCCEEEEEEeC-CCCeE
Confidence            57899999999885 5679999998                           4566667789999999999966 78999


Q ss_pred             EEEeCCCcEEEEeCCCCceEE--EE-ecCCceeEEEEcCCCcEEEEEcc--CCeEEEEeCCccccccccccccccceeee
Q 045370           81 VSSSLDATCKVWDLGSGILIQ--TQ-VYPQAVTAIAFHPGEQLLFAGSI--DGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      ++|+.||+|++||+.++....  .+ .|..+|.+++|+|++++|++++.  +..+++|++.+.          .....+.
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~----------~~~~~l~  143 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG----------TSNGNLT  143 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC----------CBCBCCC
T ss_pred             eccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccc----------ccccccc
Confidence            999999999999999876543  23 47889999999999999999875  456999998853          3344678


Q ss_pred             ccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          156 GHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       156 ~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      +|...|++++|+|++   +++|+.|+.|++||+++++....+..|..+|.++.|+|+++++++++.++.
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccc
Confidence            899999999999987   888999999999999999999999999999999999999999998887653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.9e-29  Score=207.54  Aligned_cols=219  Identities=19%  Similarity=0.234  Sum_probs=170.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcccccccccccccccc-------ccccEEEe---------eccccccceeeecccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQ-------LDQRLIEM---------ELRSLRSLLHYSLEHK   64 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~~~~h~   64 (350)
                      |+|+|++++|+||+.||+|+|||+.+........ .+...       .++..+..         ..............|.
T Consensus        23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (317)
T d1vyhc1          23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  101 (317)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeeccccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999998654332211 11111       11111111         1111233445567788


Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      ..+.++.+.+ ++..+++++.|+.+++||+.++.....+. |...+.+++|+|++.+|++++.|+.|++|++........
T Consensus       102 ~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~  180 (317)
T d1vyhc1         102 HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE  180 (317)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE
Confidence            9999998865 67889999999999999999998888765 788899999999999999999999999999876442110


Q ss_pred             c----------------------------------------------------ccccccceeeeccCCceEEEEecCCe-
Q 045370          144 F----------------------------------------------------IVGEDQHSVLKGHNGSITALAFSASH-  170 (350)
Q Consensus       144 ~----------------------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~-  170 (350)
                      .                                                    ......+..+.+|...|.+++++|++ 
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCC
Confidence            0                                                    01123345677899999999999998 


Q ss_pred             -EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          171 -LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       171 -l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                       |++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++++.|+.
T Consensus       261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence             999999999999999999999999999999999999999999998888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-28  Score=209.16  Aligned_cols=206  Identities=17%  Similarity=0.258  Sum_probs=166.2

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccc-cccccccc-----------------cccccEEEeeccccccceeeecc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQT-SELMHHSD-----------------QLDQRLIEMELRSLRSLLHYSLE   62 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~   62 (350)
                      |+|+|||++|++|+.||.|++||+....... .....+..                 ..+..+..++.. ..........
T Consensus       103 v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~~~~  181 (337)
T d1gxra_         103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQG  181 (337)
T ss_dssp             EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECC
T ss_pred             EEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            5799999999999999999999987432211 11111100                 111222222222 2445566778


Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      |...|.+++|++ ++..+++|+.|+.|++||+++++.+..+.+...|.+++|+|++.++++++.||.+++||++....  
T Consensus       182 ~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--  258 (337)
T d1gxra_         182 HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             cccccccccccc-cccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccc--
Confidence            999999999865 67889999999999999999999999999999999999999999999999999999999985432  


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                               .....|...|++++|+|++  |++|+.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.|+
T Consensus       259 ---------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         259 ---------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             ---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ---------ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCC
Confidence                     2456789999999999998  9999999999999999999998876 778999999999999999888764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.5e-28  Score=212.73  Aligned_cols=194  Identities=17%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|++++|++|+.|++|+|||+...                         .......+.+|...|.++.|.| ++..|
T Consensus        57 l~fsp~~~~l~s~s~D~~i~vWd~~~~-------------------------~~~~~~~~~~~~~~v~~i~~~p-~~~~l  110 (371)
T d1k8kc_          57 VDWAPDSNRIVTCGTDRNAYVWTLKGR-------------------------TWKPTLVILRINRAARCVRWAP-NEKKF  110 (371)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEETT-------------------------EEEEEEECCCCSSCEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEECCCeEEEEeeccc-------------------------cccccccccccccccccccccc-ccccc
Confidence            579999999999999999999998721                         1223445568899999999966 67899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEE-----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc--------ccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQ-----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF--------IVG  147 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~  147 (350)
                      ++|+.|++|++|++.........     .|...|.+++|+|++.+|++|+.||.|++|+..........        ...
T Consensus       111 ~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~  190 (371)
T d1k8kc_         111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  190 (371)
T ss_dssp             EEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             eeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccc
Confidence            99999999999998876543332     26778999999999999999999999999998765432211        111


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .........|...|++++|+|++  |++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++|+.+.
T Consensus       191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~  265 (371)
T d1k8kc_         191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF  265 (371)
T ss_dssp             TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS
T ss_pred             eeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCc
Confidence            23344567899999999999998  99999999999999999999999999999999999999999998766443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-28  Score=207.71  Aligned_cols=186  Identities=17%  Similarity=0.239  Sum_probs=153.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|||+|++|+||+ ||.|+|||+.+....                      .........+|.+.|.+++|+| ++.+|
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~~~I~~v~~s~-dg~~l  112 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRDNYIRSCKLLP-DGCTL  112 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTTSBEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCCCcEEEEEEcC-CCCEE
Confidence            58999999999997 899999999732110                      0112233467999999999966 77899


Q ss_pred             EEEeCCCcEEEEeCCCCc--eEEEE-ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           81 VSSSLDATCKVWDLGSGI--LIQTQ-VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      ++|+.||.|++||+....  ....+ .|...+.+++|+|++.++++++.|+.|++|++.+..          ......+|
T Consensus       113 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~----------~~~~~~~~  182 (337)
T d1gxra_         113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----------LVRQFQGH  182 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------EEEEECCC
T ss_pred             EEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------cccccccc
Confidence            999999999999988654  33333 477889999999999999999999999999998543          33466788


Q ss_pred             CCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          158 NGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       158 ~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ...|++++|++++  +++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.++.
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccc
Confidence            9999999999998  9999999999999999999988876 7889999999999999998877653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=205.61  Aligned_cols=225  Identities=20%  Similarity=0.304  Sum_probs=163.0

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccc----------------cccccEEEeeccccccceeeecccc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD----------------QLDQRLIEMELRSLRSLLHYSLEHK   64 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~h~   64 (350)
                      |+|+|+|++|++|+.||.|++||............+...                ..++.+..++... .. ......+.
T Consensus       127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~~  204 (388)
T d1erja_         127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQ-CSLTLSIE  204 (388)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TE-EEEEEECS
T ss_pred             EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-cc-cccccccc
Confidence            579999999999999999999998864432221111100                1112222222221 11 22233455


Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEE--------ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCC
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQ--------VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLK  136 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  136 (350)
                      ....++.+++.++.+|++|+.|+.|++||..++.....+        .|...|.+++|+|++.+|++++.||.|++||++
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            666777788888899999999999999999998877654        267789999999999999999999999999998


Q ss_pred             ccccccccc--cccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEE------
Q 045370          137 FLLLEDHFI--VGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVV------  206 (350)
Q Consensus       137 ~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~------  206 (350)
                      .........  ...........|...|++++|+|++  |++|+.||.|++||+++++++.++.+|.+.|.++++      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~  364 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  364 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc
Confidence            765432211  1122334566789999999999998  999999999999999999999999999999999975      


Q ss_pred             EccCCeEEeeecCccccccccC
Q 045370          207 IRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       207 ~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +|++.+|++++.|+. +++|++
T Consensus       365 spd~~~l~s~s~Dg~-I~iW~~  385 (388)
T d1erja_         365 GPEYNVFATGSGDCK-ARIWKY  385 (388)
T ss_dssp             CTTCEEEEEEETTSE-EEEEEE
T ss_pred             CCCCCEEEEEeCCCE-EEEEee
Confidence            578899998887753 344443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=4.2e-26  Score=190.92  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=118.3

Q ss_pred             CCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEE--EEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           65 SSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQ--TQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                      ..+.+++|++ ++.++++|+.|+.|++||+.+++...  ...|...|.+++|+|++.+|++++.|+.|++||+.+.... 
T Consensus       137 ~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-  214 (299)
T d1nr0a2         137 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-  214 (299)
T ss_dssp             SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            4566677754 77889999999999999999887554  3568899999999999999999999999999999854321 


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceE--EEEeccC-CCceeEEEEEccCCeEEeee
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVS--IRRFNHK-KGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~--~~~~~~~-~~~v~~l~~~~~~~~l~~~~  217 (350)
                            .....+.+|...|++++|+|++  |++|+.||.|++||++++..  +.....| ...+.++. ++++++|++++
T Consensus       215 ------~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s  287 (299)
T d1nr0a2         215 ------AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAG  287 (299)
T ss_dssp             ------SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEE
T ss_pred             ------cccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEe
Confidence                  1223566799999999999998  99999999999999987643  2233333 44566664 56678888777


Q ss_pred             cCccccccccC
Q 045370          218 NCQRKLKKDRM  228 (350)
Q Consensus       218 ~~~~~~~~~~~  228 (350)
                      .| ..+++|++
T Consensus       288 ~D-~~i~iWdl  297 (299)
T d1nr0a2         288 QD-SNIKFWNV  297 (299)
T ss_dssp             TT-SCEEEEEC
T ss_pred             CC-CEEEEEec
Confidence            65 45555544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.1e-25  Score=193.44  Aligned_cols=198  Identities=17%  Similarity=0.212  Sum_probs=146.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|||||++||+|+ |++|+|||+.++..............         ............|...|.+++|++ ++.+|
T Consensus        68 l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l  136 (388)
T d1erja_          68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---------DPENLNTSSSPSSDLYIRSVCFSP-DGKFL  136 (388)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCCCBEEEEEECT-TSSEE
T ss_pred             EEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc---------cccccccccccCCCCCEEEEEECC-CCCcc
Confidence            58999999999986 89999999985332211110000000         000111223457888999999966 78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++|+.||.|++||...++...... |...|.++++++++..+++++.++.+++||.+....          ......+ .
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~-~  205 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----------SLTLSIE-D  205 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------EEEEECS-S
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc----------ccccccc-c
Confidence            999999999999999998887754 889999999999999999999999999999985332          2233333 4


Q ss_pred             ceEEEEecC-Ce--EEEEeCCCcEEEEECCCceEEEEec-------cCCCceeEEEEEccCCeEEeeecCc
Q 045370          160 SITALAFSA-SH--LISASEDKTVCLWDVTRRVSIRRFN-------HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       160 ~i~~~~~~~-~~--l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ...++.+++ ++  |++|+.||.|++||..++..+..+.       +|.++|.+++|+|++++|++++.++
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            455555554 55  9999999999999999988776653       5788999999999999999888775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-25  Score=188.93  Aligned_cols=201  Identities=12%  Similarity=0.103  Sum_probs=155.5

Q ss_pred             CeecC--CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSD--DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~--dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|+|  +|.+|++|+.||+|+|||+.........                   .......+..|.++|.+++|++ ++.
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~v~~s~-~~~  128 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV-------------------EVNVKSEFQVLAGPISDISWDF-EGR  128 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE-------------------EEEEEEEEECCSSCEEEEEECT-TSS
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee-------------------ecccccccccccCcEEEEEECC-CCC
Confidence            47987  6789999999999999998732111100                   0112233567889999999966 666


Q ss_pred             EEEEEe--CCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcE-EEEEccCCeEEEEeCCccccccccccccccceee
Q 045370           79 FFVSSS--LDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQL-LFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVL  154 (350)
Q Consensus        79 ~l~s~~--~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  154 (350)
                      ++++++  .++.+.+|+..+++.+..+. |...|.+++|+|++.+ +++++.|+.+++||....+...       .....
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~-------~~~~~  201 (325)
T d1pgua1         129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-------SDRTH  201 (325)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-------EECSS
T ss_pred             ccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccce-------ecccc
Confidence            666654  46789999999999888764 8899999999998875 6788899999999987654322       11234


Q ss_pred             eccCCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEE---ccCCeEEeeecCccccccccC
Q 045370          155 KGHNGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI---RQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       155 ~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ..|...|++++|+|+.   +++++.|+.|++||+++++.+..+.+|..++.++.|+   |++++|++++.|+ .+++|+.
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-~i~iwd~  280 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-TIRVWDV  280 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-EEEEEET
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC-eEEEEEC
Confidence            5788899999999974   8899999999999999999999999998888888777   7899999888765 3455544


Q ss_pred             C
Q 045370          229 P  229 (350)
Q Consensus       229 ~  229 (350)
                      .
T Consensus       281 ~  281 (325)
T d1pgua1         281 T  281 (325)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-25  Score=188.74  Aligned_cols=195  Identities=15%  Similarity=0.116  Sum_probs=140.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|+|+|++||+|+.||+|+|||++...                        ....+....+|..+|.+++|++.++.++
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~------------------------~~~~~~~~~~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQA------------------------KNVDLLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTT------------------------TEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCC------------------------cceEEEEecCCCCCEEEEEEeCCCCCEE
Confidence            5899999999999999999999987210                        1122334457999999999998778899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec--C------------------------------------------------Ccee
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY--P------------------------------------------------QAVT  110 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~--~------------------------------------------------~~v~  110 (350)
                      ++|+.||.|++|++..+........  .                                                ....
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             EEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceee
Confidence            9999999999999876543322110  0                                                0122


Q ss_pred             EEEEcCCCcEEEEEccCCeEEEEeCCcccccccccc----------------c---------------------------
Q 045370          111 AIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIV----------------G---------------------------  147 (350)
Q Consensus       111 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------~---------------------------  147 (350)
                      ...+.+.+..+++++.||.|++||++..........                .                           
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence            334555667788888888888888765432110000                0                           


Q ss_pred             --------cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeee
Q 045370          148 --------EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       148 --------~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  217 (350)
                              .........|...+++++|+|++  |++|+.||.|++||+.+++.+..+..+ ..+..++|+|+++++++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEE
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEE
Confidence                    00000123456678999999998  999999999999999999999988643 4566788999999999888


Q ss_pred             cCc
Q 045370          218 NCQ  220 (350)
Q Consensus       218 ~~~  220 (350)
                      +++
T Consensus       312 sdd  314 (342)
T d1yfqa_         312 SDD  314 (342)
T ss_dssp             ECT
T ss_pred             cCC
Confidence            775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-25  Score=196.25  Aligned_cols=200  Identities=16%  Similarity=0.186  Sum_probs=148.4

Q ss_pred             CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCC
Q 045370            7 GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLD   86 (350)
Q Consensus         7 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   86 (350)
                      +.++++++.||+|++|++...............    ....     ..........+...+.+++|++ ++ +|++|+.|
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~D  204 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWS----PTLE-----LQGTVESPMTPSQFATSVDISE-RG-LIATGFNN  204 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC----CEEE-----EEEEECCSSSSCCCCCEEEECT-TS-EEEEECTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeec----ccee-----cccceecccCCCCcEEEEEECC-CC-EEEEEeCC
Confidence            568999999999999998632221111111000    0000     0112223345667789999865 44 78999999


Q ss_pred             CcEEEEeCCCCceEEEE-------ecCCceeEEEEcCCCcEEEEEccCC---eEEEEeCCccccccccc---ccccccee
Q 045370           87 ATCKVWDLGSGILIQTQ-------VYPQAVTAIAFHPGEQLLFAGSIDG---RIFVSPLKFLLLEDHFI---VGEDQHSV  153 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~---~~~~~~~~  153 (350)
                      ++|++||+.+++.+..+       .|..+|.+++|+|++++|++|+.|+   .|++||+.++.......   ........
T Consensus       205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~  284 (393)
T d1sq9a_         205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  284 (393)
T ss_dssp             SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceee
Confidence            99999999999877654       3778999999999999999999886   59999998765443321   12223345


Q ss_pred             eeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCcee----EEEEEccCCeEEeee
Q 045370          154 LKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVT----NLVVIRQSSLLSEVS  217 (350)
Q Consensus       154 ~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~----~l~~~~~~~~l~~~~  217 (350)
                      +.+|...|++++|+|++  |++|+.|++|+|||+.+++++.++.+|...|.    .++|+|++..+++++
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            66899999999999998  99999999999999999999999999988775    588999999887554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.8e-24  Score=178.77  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=143.7

Q ss_pred             CeecCCCCEEEEEeC--CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSD--DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      |+|+++|++|++++.  ++.+++|+++                           ....+..+.+|...|.+++|.+.+..
T Consensus       121 v~~s~~~~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1         121 ISWDFEGRRLCVVGEGRDNFGVFISWD---------------------------SGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEECTTSSEEEEEECCSSCSEEEEETT---------------------------TCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             EEECCCCCccceeeccccceEEEEeec---------------------------ccccceeeeecccccccccccccccc
Confidence            479999999988764  6789999998                           46667778899999999999886666


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCC-CcEEEEEccCCeEEEEeCCcccccccccccccccee
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPG-EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSV  153 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  153 (350)
                      ++++++.|+.|++||...++.....    .+...|.+++|+|+ +.+|++++.||.|++||++++.          .+..
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~----------~~~~  243 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----------FLKY  243 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----------EEEE
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc----------cccc
Confidence            7889999999999999988766654    35678999999996 6889999999999999998543          3446


Q ss_pred             eeccCCceEEEEec---CCe--EEEEeCCCcEEEEECCCceEEEEeccCCCc--eeEEEEEccC-CeEEeeecCc
Q 045370          154 LKGHNGSITALAFS---ASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGV--VTNLVVIRQS-SLLSEVSNCQ  220 (350)
Q Consensus       154 ~~~~~~~i~~~~~~---~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~l~~~~~~-~~l~~~~~~~  220 (350)
                      +.+|...+.++.|+   |++  |++++.|+.|+|||+++++++..+..|...  +..+++.+.+ .+|++++.|+
T Consensus       244 l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            66676665544443   444  999999999999999999999988765543  4455555443 4677777663

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.6e-23  Score=176.98  Aligned_cols=195  Identities=22%  Similarity=0.241  Sum_probs=152.9

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++++|++||||+.||+|+|||+.                           ....+..+.+|.++|.+++|++ + .+|+
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~---------------------------~~~~~~~l~~H~~~V~~l~~s~-~-~~l~   68 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSI---------------------------NKKFLLQLSGHDGGVWALKYAH-G-GILV   68 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETT---------------------------TTEEEEEEECCSSCEEEEEEET-T-TEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEECCCCCEEEEEEcC-C-CEEE
Confidence            467789999999999999999998                           5677888899999999999965 3 5799


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEec---CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc---------------
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVY---PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH---------------  143 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------  143 (350)
                      +|+.|++|++|++...........   ........+.+++.++++++.|+.|++||+........               
T Consensus        69 s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d1nexb2          69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  148 (355)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred             EEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence            999999999999999887766442   23455667788999999999999999999875431100               


Q ss_pred             --------------------------------------cccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEE
Q 045370          144 --------------------------------------FIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLW  183 (350)
Q Consensus       144 --------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iw  183 (350)
                                                            .....+......++...+.++.++|++  +++++.|+.|++|
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  228 (355)
T d1nexb2         149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW  228 (355)
T ss_dssp             TCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             cccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEee
Confidence                                                  000112223445677888899999988  9999999999999


Q ss_pred             ECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          184 DVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       184 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      |++++..+..+.+|..+|.+++|+  +++|++++.++. +++|+.
T Consensus       229 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~  270 (355)
T d1nexb2         229 DLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDA  270 (355)
T ss_dssp             ETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEET
T ss_pred             eccccccccccccccccccccccc--cceeeeeecccc-cccccc
Confidence            999999999999999999999886  468887877653 344433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.9e-23  Score=177.17  Aligned_cols=145  Identities=23%  Similarity=0.345  Sum_probs=129.2

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      .+.+++.++++|+.|+.|++||+.                           .......+.+|...|.+++|+| ++.+|+
T Consensus       191 ~~~~~~~~~~~~~~d~~v~i~d~~---------------------------~~~~~~~~~~h~~~i~~v~~~p-~~~~l~  242 (340)
T d1tbga_         191 SLAPDTRLFVSGACDASAKLWDVR---------------------------EGMCRQTFTGHESDINAICFFP-NGNAFA  242 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETT---------------------------TTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             ccccccceeEEeecCceEEEEECC---------------------------CCcEEEEEeCCCCCeEEEEECC-CCCEEE
Confidence            466788999999999999999998                           4667777889999999999965 778999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      +|+.|+.|++||+........+.   +...+.+++|+|++++|++|+.||.|++||+.+          .+.+..+.+|.
T Consensus       243 s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~H~  312 (340)
T d1tbga_         243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK----------ADRAGVLAGHD  312 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT----------CCEEEEECCCS
T ss_pred             EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC----------CcEEEEEcCCC
Confidence            99999999999999988877653   556799999999999999999999999999984          34455788999


Q ss_pred             CceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370          159 GSITALAFSASH--LISASEDKTVCLWD  184 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~~~dg~v~iwd  184 (350)
                      .+|++++|+|++  |++|+.||.|+|||
T Consensus       313 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999998  99999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-22  Score=166.76  Aligned_cols=176  Identities=22%  Similarity=0.342  Sum_probs=136.4

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      ++++||++||||+.||+|+|||+.                           ...++..+.+|.+.|.++.|   ++++|+
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~---------------------------~~~~~~~l~~H~~~V~~v~~---~~~~l~   69 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKN---------------------------TLECKRILTGHTGSVLCLQY---DERVII   69 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESS---------------------------SCCEEEEECCCSSCEEEEEC---CSSEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECC---------------------------CCcEEEEEecCCCCEeeeec---ccceee
Confidence            578899999999999999999998                           56778888999999999987   467899


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEecC--------------------------------------------CceeEEEEcCC
Q 045370           82 SSSLDATCKVWDLGSGILIQTQVYP--------------------------------------------QAVTAIAFHPG  117 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~~~--------------------------------------------~~v~~~~~~~~  117 (350)
                      +|+.|+.|++|++..+.........                                            ..+.++.+  .
T Consensus        70 s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~  147 (293)
T d1p22a2          70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--D  147 (293)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--E
T ss_pred             cccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--c
Confidence            9999999999999876544332211                                            12222222  3


Q ss_pred             CcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEeccC
Q 045370          118 EQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHK  197 (350)
Q Consensus       118 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  197 (350)
                      ...+++++.|+.|++||+++          .+.+..+.++...+..+.+++..+++++.||.|++||+++...+..+..|
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccccccccCCCceeeecCCC----------CcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeeccc
Confidence            34566666677777777763          33444677888889999888878999999999999999999999888888


Q ss_pred             CCceeEEEEEccCCeEEeeecCcc
Q 045370          198 KGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       198 ~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ...+..  +++++.+|++++.++.
T Consensus       218 ~~~v~~--~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         218 EELVRC--IRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             SSCEEE--EECCSSEEEEEETTSC
T ss_pred             ceeeee--ccccceEEEEEcCCCE
Confidence            777654  6677888888877653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.3e-23  Score=180.19  Aligned_cols=153  Identities=17%  Similarity=0.178  Sum_probs=116.9

Q ss_pred             ccCCceEEEEeeCC----CcEEEEEeCCCcEEEEeCCCCc------------eE---EEE----ecCCceeEEEEcCCCc
Q 045370           63 HKSSVTGLLTISGG----TTFFVSSSLDATCKVWDLGSGI------------LI---QTQ----VYPQAVTAIAFHPGEQ  119 (350)
Q Consensus        63 h~~~v~~~~~~~~~----~~~l~s~~~d~~v~vwd~~~~~------------~~---~~~----~~~~~v~~~~~~~~~~  119 (350)
                      +...+..+++.+..    +.++++++.||++++|++....            ..   ...    .+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            45566777776532    4678999999999999974211            11   111    134568999999987 


Q ss_pred             EEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCc---EEEEECCCceEEEEe
Q 045370          120 LLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKT---VCLWDVTRRVSIRRF  194 (350)
Q Consensus       120 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~---v~iwd~~~~~~~~~~  194 (350)
                      +|++|+.||.|++||+.++.....    ......+.+|..+|++++|+|++  |++|+.|++   |++||+.+++.+..+
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~----~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l  272 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYN----FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  272 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEE----EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCcEEEEeecccccccc----cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeee
Confidence            889999999999999987654321    22233567899999999999998  999998874   999999999888776


Q ss_pred             c-------------cCCCceeEEEEEccCCeEEeeecCc
Q 045370          195 N-------------HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       195 ~-------------~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      .             +|.+.|++++|+|++++|++++.|+
T Consensus       273 ~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence            3             6889999999999999999887764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-23  Score=172.53  Aligned_cols=163  Identities=25%  Similarity=0.315  Sum_probs=129.9

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFV  132 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  132 (350)
                      ......+.+|...+..+.+   ++.++++|+.||.|++||+..++.+..+. |...+.++.++  +++|++++.||.|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKI  241 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             ceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEE
Confidence            4555667778777776654   56789999999999999999999888754 67778877775  569999999999999


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec-----cCCCceeEEEEE
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN-----HKKGVVTNLVVI  207 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~~  207 (350)
                      ||+.......       .......|...+.++.++++.+++|+.||.|++||+++++.+..+.     +|.+.|++++|+
T Consensus       242 wd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         242 WDIKTGQCLQ-------TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             EETTTCCEEE-------EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             Eecccccccc-------cccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            9998644321       1112345778899999999889999999999999999999988774     467789999999


Q ss_pred             ccCCeEEeeecCcc---ccccccC
Q 045370          208 RQSSLLSEVSNCQR---KLKKDRM  228 (350)
Q Consensus       208 ~~~~~l~~~~~~~~---~~~~~~~  228 (350)
                      |++.+|++|+.++.   .+.+|++
T Consensus       315 ~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         315 NTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             SSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCCCEEEEEeCCCCCeeEEEEEeC
Confidence            99999999887752   3555554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-22  Score=167.56  Aligned_cols=185  Identities=23%  Similarity=0.298  Sum_probs=138.3

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEE
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFV   81 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~   81 (350)
                      +++++|++||||+.||+|+|||+.                           ...++..+.+|...|.+++|.+   .+++
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~---------------------------~~~~~~~~~~h~~~V~~v~~~~---~~l~   71 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAV---------------------------TGKCLRTLVGHTGGVWSSQMRD---NIII   71 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETT---------------------------TCCEEEECCCCSSCEEEEEEET---TEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECC---------------------------CCCEEEEEeCCCCCEEEEEeCC---Cccc
Confidence            477899999999999999999998                           4667778889999999998854   4789


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEe---------------------------------------------------------
Q 045370           82 SSSLDATCKVWDLGSGILIQTQV---------------------------------------------------------  104 (350)
Q Consensus        82 s~~~d~~v~vwd~~~~~~~~~~~---------------------------------------------------------  104 (350)
                      +|+.|+.+++|+...........                                                         
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV  151 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred             cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence            99999999988875432111100                                                         


Q ss_pred             ----------------------cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370          105 ----------------------YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus       105 ----------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                                            .........+.+++.++++++.||.|++||++.          ...+..+.+|...+.
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~----------~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET----------GNCIHTLTGHQSLTS  221 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT----------CCEEEEECCCCSCEE
T ss_pred             eecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeeccc----------ceeeeEeccccccee
Confidence                                  001122344455778889999999999999874          344457788999999


Q ss_pred             EEEecCCeEEEEeCCCcEEEEECCCceEEEEeccC---CCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          163 ALAFSASHLISASEDKTVCLWDVTRRVSIRRFNHK---KGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       163 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      ++.++++.|++|+.||.|++||+...+....+..+   ...+.++  .+++.++++++.|+ .+++|++.
T Consensus       222 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg-~i~iwd~~  288 (342)
T d2ovrb2         222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDG-TVKLWDLK  288 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTS-EEEEEETT
T ss_pred             EEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeec--ccCCCeeEEEcCCC-EEEEEECC
Confidence            99999988999999999999999998888777643   3444444  45667888887764 44555443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.1e-22  Score=170.23  Aligned_cols=147  Identities=27%  Similarity=0.413  Sum_probs=125.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeC-----
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISG-----   75 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----   75 (350)
                      ++|+|++.+|++|+.||.|++|+..+                           ......+.+|...+.++.+.+.     
T Consensus       149 ~~~~~~~~~l~~~~~d~~v~~~~~~~---------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         149 VRPNQDGTLIASCSNDQTVRVWVVAT---------------------------KECKAELREHRHVVECISWAPESSYSS  201 (317)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT---------------------------CCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             eecccCCCEEEEEeCCCeEEEEeecc---------------------------ceeeEEEecCCCCceEEEEeeccccce
Confidence            46899999999999999999999983                           4444555566666666665432     


Q ss_pred             --------------CCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccc
Q 045370           76 --------------GTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        76 --------------~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  140 (350)
                                    .+.++++++.|+.|++||+.+++++..+. |...|.+++|+|++++|++|+.||.|++||+.+   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~---  278 (317)
T d1vyhc1         202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---  278 (317)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---
T ss_pred             eeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC---
Confidence                          24578999999999999999999888754 888999999999999999999999999999984   


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEE
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWD  184 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd  184 (350)
                             .+.+..+.+|...|++++|+|++  |++|+.||+|+|||
T Consensus       279 -------~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         279 -------KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -------SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             -------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                   44556888999999999999998  99999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.3e-22  Score=170.10  Aligned_cols=183  Identities=17%  Similarity=0.274  Sum_probs=147.0

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEE
Q 045370            3 FSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVS   82 (350)
Q Consensus         3 ~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   82 (350)
                      +.+++++++++..|+.|++||+.                           ....+....++...+.++.+.+ .+.++++
T Consensus       167 ~~~~~~~~~~~~~d~~i~~~d~~---------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  218 (355)
T d1nexb2         167 VSGHGNIVVSGSYDNTLIVWDVA---------------------------QMKCLYILSGHTDRIYSTIYDH-ERKRCIS  218 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEETT---------------------------TTEEEEEECCCSSCEEEEEEET-TTTEEEE
T ss_pred             cccccceeeeecccceeeeeecc---------------------------cccceeeeeccccccccccccc-cceeeec
Confidence            45688999999999999999998                           4556666778888899998865 6788999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCCce
Q 045370           83 SSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSI  161 (350)
Q Consensus        83 ~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i  161 (350)
                      ++.|+.|++||+.++..+..+. |...|.+++++  +++|++|+.||.|++||++...            ..+..|...+
T Consensus       219 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~  284 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS------------RKFSYHHTNL  284 (355)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC------------EEEEEECTTC
T ss_pred             ccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc------------eecccccCCc
Confidence            9999999999999999888764 88899999986  5799999999999999998532            1445566666


Q ss_pred             EEEE-ecCCe-EEEEeCCCcEEEEECCCceEEEE-eccCCCceeEEEEEccCCeEEeeecCccc-cccccC
Q 045370          162 TALA-FSASH-LISASEDKTVCLWDVTRRVSIRR-FNHKKGVVTNLVVIRQSSLLSEVSNCQRK-LKKDRM  228 (350)
Q Consensus       162 ~~~~-~~~~~-l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~~~~~-~~~~~~  228 (350)
                      .++. +++++ +++++.||.|++||+++++++.. +.+|..+|.+++|+|+ .++++++.|+.+ ++.+++
T Consensus       285 ~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             CCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEEC
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEeC
Confidence            6654 56666 77777799999999999998864 5678999999999987 467767777653 444443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=5.4e-22  Score=165.62  Aligned_cols=150  Identities=15%  Similarity=0.288  Sum_probs=116.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeecccccc-ceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRS-LLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+|++++|++|+.||.|++||+++                           .. .......|...|.+++|++ ++.+
T Consensus       142 ~~~s~~~~~l~~g~~dg~i~~~d~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~  193 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQDSKVHVYKLSG---------------------------ASVSEVKTIVHPAEITSVAFSN-NGAF  193 (299)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEEEET---------------------------TEEEEEEEEECSSCEEEEEECT-TSSE
T ss_pred             cccccccccccccccccccccccccc---------------------------cccccccccccccccccccccc-cccc
Confidence            36778888888888888888888762                           22 2223457899999999966 6788


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE----ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeee
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQ----VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLK  155 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  155 (350)
                      +++++.|+.|++||+.++......    .|..+|++++|+|++.+|++|+.||.|++||++.....        ......
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~--------~~~~~~  265 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH--------PIIIKG  265 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC--------CEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc--------eEEEec
Confidence            999999999999999887655432    37889999999999999999999999999999864322        111222


Q ss_pred             -ccCCceEEEEecCCe-EEEEeCCCcEEEEECC
Q 045370          156 -GHNGSITALAFSASH-LISASEDKTVCLWDVT  186 (350)
Q Consensus       156 -~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~  186 (350)
                       .+...+.++.+.++. |++|+.|+.|++||+.
T Consensus       266 ~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence             345677888777666 9999999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-21  Score=161.65  Aligned_cols=140  Identities=19%  Similarity=0.237  Sum_probs=110.3

Q ss_pred             CCcEEEEEeCC-CcEEEEeCCCCceEEEE--ecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce
Q 045370           76 GTTFFVSSSLD-ATCKVWDLGSGILIQTQ--VYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        76 ~~~~l~s~~~d-~~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      ++..+++++.+ +.|++|++.........  .+...+++++|+|++.+|++|+.||.|++||+..+...         ..
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~---------~~  199 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK---------TS  199 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---------EC
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc---------cc
Confidence            44556666665 57999999876655553  36778999999999999999999999999999864322         12


Q ss_pred             eeeccCCceEEEEecCCe------------EEEEeCCCcEEEEECCC-ceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH------------LISASEDKTVCLWDVTR-RVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~------------l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+.+|...|++++|+|.+            +++|+.|+.|++||+++ .+.+..+.+|...|++++|+|++. |++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence            456899999999998742            89999999999999976 566777789999999999999875 5667666


Q ss_pred             ccccccc
Q 045370          220 QRKLKKD  226 (350)
Q Consensus       220 ~~~~~~~  226 (350)
                      + .+++|
T Consensus       279 ~-~v~iW  284 (287)
T d1pgua2         279 A-CIKRW  284 (287)
T ss_dssp             S-CEEEE
T ss_pred             C-eEEEE
Confidence            4 34444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.2e-21  Score=167.47  Aligned_cols=177  Identities=13%  Similarity=0.055  Sum_probs=144.4

Q ss_pred             eecC-CCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSD-DGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~-dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      .||| ||+++|+++. |.|++||+.                           .+... . ..|...|.+++|+| ++++|
T Consensus         9 ~fSP~dG~~~a~~~~-g~v~v~d~~---------------------------~~~~~-~-~~~~~~v~~~~~sp-Dg~~l   57 (360)
T d1k32a3           9 DFSPLDGDLIAFVSR-GQAFIQDVS---------------------------GTYVL-K-VPEPLRIRYVRRGG-DTKVA   57 (360)
T ss_dssp             EEEECGGGCEEEEET-TEEEEECTT---------------------------SSBEE-E-CSCCSCEEEEEECS-SSEEE
T ss_pred             cccCCCCCEEEEEEC-CeEEEEECC---------------------------CCcEE-E-ccCCCCEEEEEECC-CCCEE
Confidence            6999 9999999874 799999998                           23333 2 36999999999976 67777


Q ss_pred             EEEeCCC--cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccC
Q 045370           81 VSSSLDA--TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHN  158 (350)
Q Consensus        81 ~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  158 (350)
                      ++++.+.  .|++||..++.......|...+.+++|+|++++|++++.++.+++|++..+          .....+..|.
T Consensus        58 ~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  127 (360)
T d1k32a3          58 FIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----------KPTVIERSRE  127 (360)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----------CEEEEEECSS
T ss_pred             EEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccccccccccccc----------ceeeeeeccc
Confidence            7665443  799999999988887889999999999999999999999999999999853          3334667788


Q ss_pred             CceEEEEecCCe--EEEE----------eCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          159 GSITALAFSASH--LISA----------SEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       159 ~~i~~~~~~~~~--l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+.+++|+|++  |+.+          ..++.+++||+.+++...... +...+..++|+|+|+.|++++.+.
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~~  200 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRS  200 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESCC
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-cccccccccccCCCCEEEEEeCCC
Confidence            899999999999  5533          334579999999887765544 677889999999999999887664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-20  Score=151.96  Aligned_cols=202  Identities=20%  Similarity=0.324  Sum_probs=146.8

Q ss_pred             eecCCCCEEEEEeCCCcEEEEeCccccccccccccccc--------------ccc--ccEEEeeccccccceeeeccccC
Q 045370            2 VFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSD--------------QLD--QRLIEMELRSLRSLLHYSLEHKS   65 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~h~~   65 (350)
                      ++++++++|++|+.||.|++|++...............              ...  ..++................|..
T Consensus        60 ~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (293)
T d1p22a2          60 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  139 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             eeecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccc
Confidence            45678999999999999999999864432222111100              111  12222222222334445677888


Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  144 (350)
                      .+..+.+.   ...+++++.|+.|++||+.+++.+..+. +...+..+.++  +.++++++.||.|++||+++.      
T Consensus       140 ~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------  208 (293)
T d1p22a2         140 AVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG------  208 (293)
T ss_dssp             CEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC------
T ss_pred             ccccceec---ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc------
Confidence            88877663   3568899999999999999999887765 56667776664  678999999999999999853      


Q ss_pred             ccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCC---------ceEEEEeccCCCceeEEEEEccCCeEEe
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTR---------RVSIRRFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                          ..+....+|...+.++...+..|++|+.||.|++||+.+         ...+..+.+|.++|++++|  ++.+|++
T Consensus       209 ----~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s  282 (293)
T d1p22a2         209 ----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS  282 (293)
T ss_dssp             ----CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred             ----eeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEE
Confidence                344466778888887776666699999999999999753         3467888899999999998  4678888


Q ss_pred             eecCc
Q 045370          216 VSNCQ  220 (350)
Q Consensus       216 ~~~~~  220 (350)
                      ++.|+
T Consensus       283 ~s~Dg  287 (293)
T d1p22a2         283 SSHDD  287 (293)
T ss_dssp             CCSSS
T ss_pred             EecCC
Confidence            87764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.7e-20  Score=155.45  Aligned_cols=116  Identities=20%  Similarity=0.355  Sum_probs=99.1

Q ss_pred             eccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--EecCCceeEEEEcCC----------CcEEEEEccC
Q 045370           60 SLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QVYPQAVTAIAFHPG----------EQLLFAGSID  127 (350)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~----------~~~l~~~~~d  127 (350)
                      ...|...+.+++|++ ++.+|++|+.||.|++||+.++.....  ..|...|.+++|+|.          +.+|++|+.|
T Consensus       158 ~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         158 KTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             SSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             eeccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            345788999999965 778999999999999999999887654  357889999999874          4689999999


Q ss_pred             CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe-EEEEeCCCcEEEEEC
Q 045370          128 GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH-LISASEDKTVCLWDV  185 (350)
Q Consensus       128 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~  185 (350)
                      +.|++||++..         ...+..+.+|...|++++|+|++ |++++.|+.|++||+
T Consensus       237 ~~i~iw~~~~~---------~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         237 TNIFIYSVKRP---------MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCEEEEESSCT---------TCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCC---------CeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            99999998742         33445677899999999999998 999999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=3.3e-17  Score=135.87  Aligned_cols=200  Identities=13%  Similarity=0.096  Sum_probs=144.1

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|||||++| ++++.++.|++||+.                           ....+..+..+. .+..+++.+.+...
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~---------------------------t~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTA---------------------------TNNVIATVPAGS-SPQGVAVSPDGKQV   88 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETT---------------------------TTEEEEEEECSS-SEEEEEECTTSSEE
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECC---------------------------CCceeeeeeccc-cccccccccccccc
Confidence            5899999987 567789999999998                           355555555554 46788887766667


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCccccccccccc-----------
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLEDHFIVG-----------  147 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----------  147 (350)
                      ++++..++.+.+|+..+++....+.+...+.++.|+|++..++ ++..++.+.+|+..+..........           
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             cccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecc
Confidence            7778888999999999999999998888899999999998775 5556788999998765422210000           


Q ss_pred             --------------------cccceeeeccCCceEEEEecCCe--EEEEe---CCCcEEEEECCCceEEEEeccCCCcee
Q 045370          148 --------------------EDQHSVLKGHNGSITALAFSASH--LISAS---EDKTVCLWDVTRRVSIRRFNHKKGVVT  202 (350)
Q Consensus       148 --------------------~~~~~~~~~~~~~i~~~~~~~~~--l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~  202 (350)
                                          .............+..+++++++  ++.++   .++.|++||+.+++.+..+.. ...+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~  247 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPA  247 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred             ccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEE
Confidence                                00000111233456778899888  44333   347899999999999988874 45679


Q ss_pred             EEEEEccCCeEEeeecCccccccccCC
Q 045370          203 NLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       203 ~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      +++|+|+|++|++++..+..+.+|+..
T Consensus       248 ~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         248 GIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            999999999876555554455555543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=2.5e-18  Score=146.45  Aligned_cols=178  Identities=12%  Similarity=-0.031  Sum_probs=139.1

Q ss_pred             CeecCCCCEEEEEeCCC--cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            1 MVFSDDGFLLISGSDDG--MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      ++|||||++|++++.+.  .|++||.+                            ......+..|...|.+++|+| ++.
T Consensus        48 ~~~spDg~~l~~~~~~~g~~v~v~d~~----------------------------~~~~~~~~~~~~~v~~~~~sp-dg~   98 (360)
T d1k32a3          48 VRRGGDTKVAFIHGTREGDFLGIYDYR----------------------------TGKAEKFEENLGNVFAMGVDR-NGK   98 (360)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEETT----------------------------TCCEEECCCCCCSEEEEEECT-TSS
T ss_pred             EEECCCCCEEEEEEcCCCCEEEEEECC----------------------------CCcEEEeeCCCceEEeeeecc-ccc
Confidence            57999999998777553  79999998                            344556778999999999966 788


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc----------cCCeEEEEeCCccccccccccc
Q 045370           79 FFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS----------IDGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        79 ~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      ++++++.++.+.+|++.+++....+. +...+.+++|+|+|++|+.+.          .++.+++||+.....       
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------  171 (360)
T d1k32a3          99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-------  171 (360)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-------
T ss_pred             ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce-------
Confidence            99999999999999999998887765 677899999999999998653          345789999885432       


Q ss_pred             cccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceE-------EEEeccCCCceeEEEEEccCCeEEeeec
Q 045370          148 EDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVS-------IRRFNHKKGVVTNLVVIRQSSLLSEVSN  218 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~~~~  218 (350)
                          ..+..+...+..+.|+|++  |++++.++.+++||......       +..+..+...+..+.|++++..++++..
T Consensus       172 ----~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  247 (360)
T d1k32a3         172 ----FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  247 (360)
T ss_dssp             ----EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             ----eeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccce
Confidence                2444567788999999999  99999999999999765432       3334445566666778888777665443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=4.5e-18  Score=148.98  Aligned_cols=192  Identities=10%  Similarity=0.025  Sum_probs=124.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE-
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF-   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-   79 (350)
                      |+|||||++|++++.||+|++||+.+......                      ..+....+|...+.+++|+| ++++ 
T Consensus        67 vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~----------------------~~i~~~~~~~~~~~s~~~sp-DG~~l  123 (426)
T d1hzua2          67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKV----------------------AEIKIGIEARSVESSKFKGY-EDRYT  123 (426)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCEEE----------------------EEEECCSEEEEEEECCSTTC-TTTEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEccCCceeEE----------------------EEEeCCCCCcceEEeeeecC-CCCEE
Confidence            58999999999999999999999984221100                      01112234445555555544 4443 


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE--------------------------------------------------------E
Q 045370           80 FVSSSLDATCKVWDLGSGILIQT--------------------------------------------------------Q  103 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~--------------------------------------------------------~  103 (350)
                      ++++..++.+.+||..++.+...                                                        .
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence            34555677777777665543322                                                        1


Q ss_pred             ecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccc--------------------------------------
Q 045370          104 VYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHF--------------------------------------  144 (350)
Q Consensus       104 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~--------------------------------------  144 (350)
                      .+...+..+.|+|++++++++. .+..+.+++..........                                      
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~  283 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  283 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred             ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeec
Confidence            2233456788899888777665 4466777777654421100                                      


Q ss_pred             ------ccccccceeeeccCCceEEEEecCCe--EEE-------EeCCCcEEEEECCCceEEEEe---------ccCCCc
Q 045370          145 ------IVGEDQHSVLKGHNGSITALAFSASH--LIS-------ASEDKTVCLWDVTRRVSIRRF---------NHKKGV  200 (350)
Q Consensus       145 ------~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s-------~~~dg~v~iwd~~~~~~~~~~---------~~~~~~  200 (350)
                            ....+....+.+|...+..++|+|++  |++       ++.|++|+|||+.+++...++         ..|...
T Consensus       284 ~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r  363 (426)
T d1hzua2         284 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  363 (426)
T ss_dssp             CTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCC
T ss_pred             cccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCcc
Confidence                  00113344677899999999999999  663       456789999999998766554         234556


Q ss_pred             eeEEEEEccCCeEEe
Q 045370          201 VTNLVVIRQSSLLSE  215 (350)
Q Consensus       201 v~~l~~~~~~~~l~~  215 (350)
                      |.+++|||||++++.
T Consensus       364 v~~~~fSpDGk~i~v  378 (426)
T d1hzua2         364 VVQPEYNKRGDEVWF  378 (426)
T ss_dssp             EEEEEECSSSSEEEE
T ss_pred             EEEEEECCCCCEEEE
Confidence            889999999997643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=6.2e-17  Score=136.81  Aligned_cols=199  Identities=11%  Similarity=-0.016  Sum_probs=139.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeec-cccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSL-EHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~   79 (350)
                      ++|+++++||++++.|++|.|||+.                           +.+.+..+. .|...+.+++|+|.+..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~---------------------------t~~~~~t~~~~~~~~p~~l~~spDG~~l   54 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVA---------------------------SDTVYKSCVMPDKFGPGTAMMAPDNRTA   54 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETT---------------------------TTEEEEEEECSSCCSSCEEEECTTSSEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECC---------------------------CCCEEEEEEcCCCCCcceEEECCCCCEE
Confidence            5899999999999999999999999                           466666654 566778899997644444


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecC-------CceeEEEEcCCCcEEEEEc------------cCCeEEEEeCCcccc
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYP-------QAVTAIAFHPGEQLLFAGS------------IDGRIFVSPLKFLLL  140 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~  140 (350)
                      +++++.++.|.+||+.+++.+..+...       ..+..++|+|||+++++++            .++.+.+|+..++..
T Consensus        55 ~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence            567778999999999999988776532       2366789999999887764            356677776654321


Q ss_pred             ccccc-------------------------------cccc----------------------------------------
Q 045370          141 EDHFI-------------------------------VGED----------------------------------------  149 (350)
Q Consensus       141 ~~~~~-------------------------------~~~~----------------------------------------  149 (350)
                      .....                               ....                                        
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
T d1jmxb_         135 AKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  214 (346)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeee
Confidence            10000                               0000                                        


Q ss_pred             ----------------------------cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCC
Q 045370          150 ----------------------------QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKG  199 (350)
Q Consensus       150 ----------------------------~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  199 (350)
                                                  .......|...+..+.+++++  ++.+. ++.|++||+.+++.+..+. +..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~  292 (346)
T d1jmxb_         215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDH  292 (346)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSS
T ss_pred             eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCC
Confidence                                        000112344455666666666  44443 4689999999999998887 456


Q ss_pred             ceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          200 VVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       200 ~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      .+.+++|+|||++|++++.++ .+.+|+..
T Consensus       293 ~~~~va~s~DG~~l~v~~~d~-~v~v~D~~  321 (346)
T d1jmxb_         293 TYYCVAFDKKGDKLYLGGTFN-DLAVFNPD  321 (346)
T ss_dssp             CCCEEEECSSSSCEEEESBSS-EEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEeCCC-cEEEEECc
Confidence            799999999999999887764 35555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=2.9e-17  Score=143.79  Aligned_cols=189  Identities=10%  Similarity=-0.041  Sum_probs=137.8

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT   88 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   88 (350)
                      ++++.+.||+|.|||..                           +...+..+..| ..+..++|+| +++++++++.|++
T Consensus        34 ~~v~~~d~g~v~v~D~~---------------------------t~~v~~~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~   84 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGS---------------------------TYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGK   84 (432)
T ss_dssp             EEEEETTTTEEEEEETT---------------------------TCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSE
T ss_pred             EEEEEcCCCEEEEEECC---------------------------CCcEEEEEeCC-CCeeEEEECC-CCCEEEEEcCCCC
Confidence            46899999999999999                           57777777766 4689999865 8899999999999


Q ss_pred             EEEEeCCCCce--EEEEe----cCCceeEEEEcCCCcEE-EEEccCCeEEEEeCCccccccccccccccc-eeeeccCCc
Q 045370           89 CKVWDLGSGIL--IQTQV----YPQAVTAIAFHPGEQLL-FAGSIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLKGHNGS  160 (350)
Q Consensus        89 v~vwd~~~~~~--~~~~~----~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (350)
                      |.+||+.+++.  ...+.    +.+.+.+..|+|||++| ++++.++.|.+||..++............. .....+...
T Consensus        85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~  164 (432)
T d1qksa2          85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR  164 (432)
T ss_dssp             EEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred             EEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence            99999988764  33343    33344555667899976 667789999999998766543322111111 112235567


Q ss_pred             eEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEec-cCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          161 ITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFN-HKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ...+.++|++   +++...++.|.+||..+++...... .+...+..++|+|+|+++++++.+...+.++
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~  234 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI  234 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEe
Confidence            7889999988   5677788999999998876544332 2456788999999999988888765544444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.7e-16  Score=133.49  Aligned_cols=196  Identities=11%  Similarity=0.004  Sum_probs=137.8

Q ss_pred             CeecCCCCEE-EEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc-----ccCCceEEEEee
Q 045370            1 MVFSDDGFLL-ISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE-----HKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~   74 (350)
                      |+|+|||++| ++++.++.|.+||+.+                           ...+.....     +...+..+++++
T Consensus        39 i~~spDg~~l~v~~~~~~~v~v~D~~t---------------------------~~~~~~~~~~~~~~~~~~~~~v~~s~   91 (337)
T d1pbyb_          39 PMVAPGGRIAYATVNKSESLVKIDLVT---------------------------GETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT---------------------------CCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCC---------------------------CcEEEEEecCCCcccccceeeEEEcC
Confidence            5799999987 5677899999999983                           333333322     234455677755


Q ss_pred             CCCcEEEEEe------------CCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccc
Q 045370           75 GGTTFFVSSS------------LDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLED  142 (350)
Q Consensus        75 ~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  142 (350)
                       ++.+++++.            .+..+.+||..++.....+.....+..++|+|+|+++++++.+  +.+||...+....
T Consensus        92 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~  168 (337)
T d1pbyb_          92 -DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVE  168 (337)
T ss_dssp             -TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEE
T ss_pred             -CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEE
Confidence             566666554            4678999999999999998888889999999999999998654  6678876543211


Q ss_pred             ccccc--------------------------------------------------------cccceeeeccCCceEEEEe
Q 045370          143 HFIVG--------------------------------------------------------EDQHSVLKGHNGSITALAF  166 (350)
Q Consensus       143 ~~~~~--------------------------------------------------------~~~~~~~~~~~~~i~~~~~  166 (350)
                      .....                                                        ......+..+...+..+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T d1pbyb_         169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEe
Confidence            10000                                                        0000122334556667777


Q ss_pred             cCCe-EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccCC
Q 045370          167 SASH-LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       167 ~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~~  229 (350)
                      +|++ ++. +.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++.++. +.+|+..
T Consensus       249 ~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~  309 (337)
T d1pbyb_         249 NPAKTRAF-GAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAE  309 (337)
T ss_dssp             CTTSSEEE-EEESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE-EEEEETT
T ss_pred             cccceEEE-EccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCc-EEEEECC
Confidence            8877 332 336899999999999999987 5677899999999999998877654 4455443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=5.5e-15  Score=122.24  Aligned_cols=176  Identities=15%  Similarity=0.132  Sum_probs=134.7

Q ss_pred             EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE-EEEEeCCCc
Q 045370           10 LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF-FVSSSLDAT   88 (350)
Q Consensus        10 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~d~~   88 (350)
                      +++++.|++|.|||++                           ..+.+..+. ....+..++|+| ++++ +++++.++.
T Consensus         5 yV~~~~~~~v~v~D~~---------------------------t~~~~~~i~-~g~~p~~va~sp-dG~~l~v~~~~~~~   55 (301)
T d1l0qa2           5 YIANSESDNISVIDVT---------------------------SNKVTATIP-VGSNPMGAVISP-DGTKVYVANAHSND   55 (301)
T ss_dssp             EEEETTTTEEEEEETT---------------------------TTEEEEEEE-CSSSEEEEEECT-TSSEEEEEEGGGTE
T ss_pred             EEEECCCCEEEEEECC---------------------------CCeEEEEEE-CCCCceEEEEeC-CCCEEEEEECCCCE
Confidence            4567789999999998                           345444443 335578898866 5554 567788999


Q ss_pred             EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCccccccccccccccceeeeccCCceEEEEec
Q 045370           89 CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFS  167 (350)
Q Consensus        89 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  167 (350)
                      |.+||+.+++.+..+.....+..+.|++++..++ ++..++.+.+|+...+...          ..+. +.....++.++
T Consensus        56 i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~  124 (301)
T d1l0qa2          56 VSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA----------GTVK-TGKSPLGLALS  124 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----------EEEE-CSSSEEEEEEC
T ss_pred             EEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceee----------eecc-ccccceEEEee
Confidence            9999999999999888777889999999998665 4566789999998854322          2333 44567889999


Q ss_pred             CCe---EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          168 ASH---LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       168 ~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      |++   ++++..++.+.+|+..++..+..+..+ ..+..+.++|++..+++++.+...+.++
T Consensus       125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccc
Confidence            998   566777889999999999999888744 5678899999999888787765444333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2e-16  Score=132.80  Aligned_cols=155  Identities=16%  Similarity=0.167  Sum_probs=112.1

Q ss_pred             ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCce----EEEEecCCceeEEEEcCC-CcEEEEEccCCeE
Q 045370           56 LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGIL----IQTQVYPQAVTAIAFHPG-EQLLFAGSIDGRI  130 (350)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  130 (350)
                      .+....+|.+.|++++|+| ++.+|++|+.||+|++||+.++..    .....|..+|.+++|+|+ +.+|++|+.||.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3455689999999999976 678999999999999999976543    333569999999999986 5689999999999


Q ss_pred             EEEeCCccccccccccccccceeeec-cCCceEEEEecCCe--EEEEeCCCcEEEEECCCce----EEEEeccC--CCce
Q 045370          131 FVSPLKFLLLEDHFIVGEDQHSVLKG-HNGSITALAFSASH--LISASEDKTVCLWDVTRRV----SIRRFNHK--KGVV  201 (350)
Q Consensus       131 ~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~----~~~~~~~~--~~~v  201 (350)
                      ++|++.......          .... +........+.++.  +++++.|+.+++||++++.    .......+  ....
T Consensus        82 ~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          82 LKVDLIGSPSFQ----------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEECSSSSSSEE----------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             eeeecccccccc----------cccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence            999998543221          2222 22233333344333  9999999999999987543    23333222  3345


Q ss_pred             eEEEEEccCCeEEeeecCcc
Q 045370          202 TNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       202 ~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ..+.+.+.+..+++++.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTE
T ss_pred             eeeeeeccCCceeeecCCCc
Confidence            66778889998888877653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=3.5e-15  Score=130.35  Aligned_cols=184  Identities=10%  Similarity=-0.022  Sum_probs=124.7

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEEEEEeCCCc
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDAT   88 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   88 (350)
                      ++++.+.||+|+|||+.                           +...+..+..| ..+..++|+| +++++++++.|++
T Consensus        34 ~~V~~~~dg~v~vwD~~---------------------------t~~~~~~l~~g-~~~~~vafSP-DGk~l~~~~~d~~   84 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGD---------------------------SKKIVKVIDTG-YAVHISRMSA-SGRYLLVIGRDAR   84 (426)
T ss_dssp             EEEEETTTTEEEEEETT---------------------------TCSEEEEEECC-SSEEEEEECT-TSCEEEEEETTSE
T ss_pred             EEEEEcCCCEEEEEECC---------------------------CCcEEEEEeCC-CCeeEEEECC-CCCEEEEEeCCCC
Confidence            56888899999999999                           56777777766 4689999865 8889999999999


Q ss_pred             EEEEeCCCCceEEE--Ee----cCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCccccccccccccccc-eeeeccCCc
Q 045370           89 CKVWDLGSGILIQT--QV----YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFLLLEDHFIVGEDQH-SVLKGHNGS  160 (350)
Q Consensus        89 v~vwd~~~~~~~~~--~~----~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (350)
                      |++||+.+++....  +.    |...+.+++|+|||++++++ ..++.+.+||...+............. .....+...
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  164 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence            99999998875443  33    33445566777899987555 578999999998765433211111111 011123344


Q ss_pred             eEEEEecCCe---EEEEeCCCcEEEEECCCceEE-EEeccCCCceeEEEEEccCCeEEeeecCcc
Q 045370          161 ITALAFSASH---LISASEDKTVCLWDVTRRVSI-RRFNHKKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       161 i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                      ...+..++++   +.+....+.+.+++......+ .....+...+..+.|+|++++++++.....
T Consensus       165 ~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~  229 (426)
T d1hzua2         165 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSN  229 (426)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCS
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeeccc
Confidence            5566666666   333344566666666554322 122246678899999999999888776543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=1.2e-15  Score=133.34  Aligned_cols=137  Identities=10%  Similarity=-0.052  Sum_probs=107.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeecc
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGH  157 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  157 (350)
                      -++++.+.||+|.+||..+++++..+.....+..++|+|||+++++++.||.|.+||+.+......     ..+.....|
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~-----~~i~~~~~~  107 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-----AEIKIGSEA  107 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-----EEEECCSEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE-----EEEecCCCC
Confidence            346899999999999999999999998777899999999999999999999999999986532211     111123356


Q ss_pred             CCceEEEEecCCe---EEEEeCCCcEEEEECCCceEEEEeccC-----------CCceeEEEEEccCCeEEeeecC
Q 045370          158 NGSITALAFSASH---LISASEDKTVCLWDVTRRVSIRRFNHK-----------KGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       158 ~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+.+.+..|+|+|   +++++.++.|++||..+++++..+..+           .+....+.++|++..++.+..+
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            6667777888898   477888999999999999998877543           3345667888988876655544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=5.3e-14  Score=117.95  Aligned_cols=146  Identities=11%  Similarity=0.051  Sum_probs=105.6

Q ss_pred             CEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeecc--ccCCceEEEEeeCCCcEE-EEEe
Q 045370            8 FLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLE--HKSSVTGLLTISGGTTFF-VSSS   84 (350)
Q Consensus         8 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l-~s~~   84 (350)
                      +||++++.|++|.|||++                           ....+..+..  +...+.+++++| +++++ ++++
T Consensus         2 ~~~vt~~~d~~v~v~D~~---------------------------s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~   53 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTE---------------------------KMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETT---------------------------TTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEET
T ss_pred             eEEEEEcCCCEEEEEECC---------------------------CCeEEEEEECCCCCCCccEEEECC-CCCEEEEEEC
Confidence            489999999999999999                           3555555533  445678898866 66654 6778


Q ss_pred             CCCcEEEEeCCCCceEEEEecC------CceeEEEEcCCCcEEEEEcc------------CCeEEEEeCCcccccccccc
Q 045370           85 LDATCKVWDLGSGILIQTQVYP------QAVTAIAFHPGEQLLFAGSI------------DGRIFVSPLKFLLLEDHFIV  146 (350)
Q Consensus        85 ~d~~v~vwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~  146 (350)
                      .++.|.+||+.+++.+..+...      ..+..++|+|++++++++..            ++.+.+||.......     
T Consensus        54 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----  128 (337)
T d1pbyb_          54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-----  128 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-----
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE-----
Confidence            8999999999999988876532      34568999999999988764            567777877754322     


Q ss_pred             ccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEe
Q 045370          147 GEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRF  194 (350)
Q Consensus       147 ~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~  194 (350)
                           ..+. +...+.+++|+|++  +++++.  .+.+||..+++....+
T Consensus       129 -----~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_         129 -----KAFE-APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             -----EEEE-CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEE
T ss_pred             -----Eecc-ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEe
Confidence                 2232 34567788999998  666654  4677888776655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.3e-13  Score=112.31  Aligned_cols=201  Identities=12%  Similarity=0.076  Sum_probs=126.7

Q ss_pred             CeecCCCCEEEEEe-CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+|||||++|++++ .|+.|.+|++....                        ..........+...+..++|++ ++++
T Consensus        42 la~spDG~~L~v~~~~d~~i~~~~i~~~~------------------------~~~~~~~~~~~~~~p~~l~~sp-Dg~~   96 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDD------------------------GALTFAAESALPGSLTHISTDH-QGQF   96 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTT------------------------CCEEEEEEEECSSCCSEEEECT-TSSE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEeCCC------------------------CcEEEeeecccCCCceEEEEcC-CCCE
Confidence            58999999986555 58999999987210                        0011112233455677888866 6676


Q ss_pred             EEEEe-CCCcEEEEeCCCCceEEE---EecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccc-----------
Q 045370           80 FVSSS-LDATCKVWDLGSGILIQT---QVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDH-----------  143 (350)
Q Consensus        80 l~s~~-~d~~v~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~-----------  143 (350)
                      +++++ .++.|.+|+.........   ..+...+.++.++|+++++++++. +..|.+|+.........           
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             EeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecC
Confidence            77666 477899999887665444   335667889999999998877764 46788888654321000           


Q ss_pred             -----ccc--ccc----------------------cc---eee------eccCCceEEEEecCCe---EEEEeCCCcEEE
Q 045370          144 -----FIV--GED----------------------QH---SVL------KGHNGSITALAFSASH---LISASEDKTVCL  182 (350)
Q Consensus       144 -----~~~--~~~----------------------~~---~~~------~~~~~~i~~~~~~~~~---l~s~~~dg~v~i  182 (350)
                           ...  ...                      ..   ...      .........+++++++   ++++..++.+.+
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~  256 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  256 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEE
Confidence                 000  000                      00   000      0122345667888887   566667889999


Q ss_pred             EECCCceEEEE---eccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          183 WDVTRRVSIRR---FNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       183 wd~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      |++........   .......+.+++|+|+|++|++++.+...+.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence            98875432222   223445678999999999988777665544444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1e-12  Score=110.01  Aligned_cols=177  Identities=14%  Similarity=0.173  Sum_probs=121.5

Q ss_pred             EEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE-EEEeCCC
Q 045370            9 LLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF-VSSSLDA   87 (350)
Q Consensus         9 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d~   87 (350)
                      .+++++.|++|++|++...                         ..........|.+.+..++|+| ++++| +++..|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~-------------------------~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~   59 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHE-------------------------GALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEF   59 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTT-------------------------SCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTT
T ss_pred             EEEECCCCCcEEEEEEcCC-------------------------CCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCC
Confidence            4578889999999998721                         1112233356889999999976 56666 5555689


Q ss_pred             cEEEEeCCCCceE----EEEecCCceeEEEEcCCCcEEEEEcc-CCeEEEEeCCccccccccccccccceeeeccCCceE
Q 045370           88 TCKVWDLGSGILI----QTQVYPQAVTAIAFHPGEQLLFAGSI-DGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSIT  162 (350)
Q Consensus        88 ~v~vwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  162 (350)
                      .|.+|++......    ....+...+..++|+|+|++|++++. ++.+.+|+.......        .......+...+.
T Consensus        60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~  131 (333)
T d1ri6a_          60 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV--------GVVDVVEGLDGCH  131 (333)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE--------EEEEEECCCTTBC
T ss_pred             eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce--------ecccccCCCccce
Confidence            9999999865432    22345567889999999999998875 678998887643221        1123345667788


Q ss_pred             EEEecCCe--EEEEe-CCCcEEEEECCCceEEEE------eccCCCceeEEEEEccCCeEEeeecC
Q 045370          163 ALAFSASH--LISAS-EDKTVCLWDVTRRVSIRR------FNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       163 ~~~~~~~~--l~s~~-~dg~v~iwd~~~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      ++.++|++  +++++ .+..|.+|+.........      ..........++|++++.+++.....
T Consensus       132 ~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~  197 (333)
T d1ri6a_         132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL  197 (333)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc
Confidence            89999998  44444 567899999876432211      11234456889999999988766544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=5.1e-11  Score=101.21  Aligned_cols=228  Identities=11%  Similarity=-0.005  Sum_probs=132.0

Q ss_pred             CeecCCCCEEEEEe----------CCCcEEEEeCccccccccccccccc-------------ccccc-EE--Eeeccccc
Q 045370            1 MVFSDDGFLLISGS----------DDGMICVWSMTRLLKQTSELMHHSD-------------QLDQR-LI--EMELRSLR   54 (350)
Q Consensus         1 i~~s~dg~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~-~~--~~~~~~~~   54 (350)
                      ++|||||++|++++          .++.|.+||..++........+...             ..++. ++  ........
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~  150 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCce
Confidence            57999999998875          4678999999875543221111100             01111 11  11100000


Q ss_pred             c----ceeeeccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------cCCceeEEEEcCCCcEEEE
Q 045370           55 S----LLHYSLEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-------YPQAVTAIAFHPGEQLLFA  123 (350)
Q Consensus        55 ~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~  123 (350)
                      .    .......+.....++.+.+.+...+++.+.|+.+.+|+...+.......       .......+.+++++.+ +.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  229 (373)
T d2madh_         151 GLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VW  229 (373)
T ss_pred             EEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EE
Confidence            0    0011233445566777877666677899999999999999887766532       1112344555555544 45


Q ss_pred             EccCCeEEEEeCCcccccccccccccc--ceeeeccCCceEEEEecCCe------------EEEEeCCCcEEEEECCCce
Q 045370          124 GSIDGRIFVSPLKFLLLEDHFIVGEDQ--HSVLKGHNGSITALAFSASH------------LISASEDKTVCLWDVTRRV  189 (350)
Q Consensus       124 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~------------l~s~~~dg~v~iwd~~~~~  189 (350)
                      .+.++.+.+|+................  .............+++++++            +++...++.+.+||..+++
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~  309 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc
Confidence            556889999998865432211111000  00111111222333444433            5566777899999999999


Q ss_pred             EEEEeccCCCceeEEEEEccCCe-EEeeecCccccccccCCc
Q 045370          190 SIRRFNHKKGVVTNLVVIRQSSL-LSEVSNCQRKLKKDRMPS  230 (350)
Q Consensus       190 ~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~~~~~~~~~~~~~  230 (350)
                      .+..+. +...+.+++|+|||+. |++++..+..+.+|+...
T Consensus       310 ~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            999887 5677899999999984 344444555566665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=3.5e-12  Score=107.73  Aligned_cols=120  Identities=13%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             eeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccce--eeeccCCceEEEEecCCe--EEEEeCC-------
Q 045370          109 VTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHS--VLKGHNGSITALAFSASH--LISASED-------  177 (350)
Q Consensus       109 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~--l~s~~~d-------  177 (350)
                      +....+.+++..++.++.++.+++|++.................  ...........+++++++  ++....+       
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~  276 (355)
T d2bbkh_         197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK  276 (355)
T ss_dssp             CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred             eeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence            44456666777778888889999999876543211110000000  000111223457788877  3333322       


Q ss_pred             ---CcEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCccccccccCC
Q 045370          178 ---KTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQRKLKKDRMP  229 (350)
Q Consensus       178 ---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~~~~~~~~~~  229 (350)
                         ..|.+||..+++.+..+.. ...+.+++|+|||+ ++++++..+..+.+|+..
T Consensus       277 ~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         277 TASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence               4799999999999988873 45689999999997 344444444455555543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.26  E-value=6.3e-10  Score=94.28  Aligned_cols=122  Identities=7%  Similarity=0.008  Sum_probs=86.2

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEe-------------cCCceeEEEEcCCCcEEE----------EEccCCeEEEE
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQV-------------YPQAVTAIAFHPGEQLLF----------AGSIDGRIFVS  133 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~----------~~~~dg~i~i~  133 (350)
                      ...++..+.++.+.+|+...+.......             .+.....+++++++..++          +...++.+.+|
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            3446667788999999988765433311             122344556666665544          44556778888


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEcc
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  209 (350)
                      |..++...          ..+ .+...+..++|+|++    +++++.|+.|++||+.+++.+.++..+....+.|++.++
T Consensus       304 d~~t~~~~----------~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         304 TGLVGQTS----------SQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCCcEE----------EEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            88754322          222 355678999999997    467889999999999999999999877777788887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=2.6e-10  Score=95.93  Aligned_cols=197  Identities=13%  Similarity=0.038  Sum_probs=121.5

Q ss_pred             CeecCCCCEEEEEe--CCCcEEEEeCcccccccccccccc-------------ccccccEEEeeccccccce-e----ee
Q 045370            1 MVFSDDGFLLISGS--DDGMICVWSMTRLLKQTSELMHHS-------------DQLDQRLIEMELRSLRSLL-H----YS   60 (350)
Q Consensus         1 i~~s~dg~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~----~~   60 (350)
                      ++|+|||++++.++  .+..+.+|+..+............             ...++.............. .    ..
T Consensus       111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~  190 (355)
T d2bbkh_         111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  190 (355)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence            46999999887765  467899999886432221111100             0111111111111111100 0    11


Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE--Ee-----------cCCceeEEEEcCCCcEEEEEccC
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT--QV-----------YPQAVTAIAFHPGEQLLFAGSID  127 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~~d  127 (350)
                      ..+...+....+.+ ++..++.++.++.+.+|++..+.....  ..           .+.....+++++++..++....+
T Consensus       191 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         191 PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence            23334455556655 455678889999999999998765332  11           12334568899999988876543


Q ss_pred             ----------CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEE
Q 045370          128 ----------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       128 ----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~  193 (350)
                                ..|.+||..+++..          ..+. +...+.+++|+|++    +++++.|+.|++||+.+++.+.+
T Consensus       270 ~~~~~~~~~~~~v~v~d~~t~~~~----------~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         270 RDEWRHKTASRFVVVLDAKTGERL----------AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEE----------EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCceeecCCCCeEEEEeCCCCcEE----------EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence                      36999998865432          2332 23457899999997    45667899999999999999999


Q ss_pred             eccCCCceeEEEEEcc
Q 045370          194 FNHKKGVVTNLVVIRQ  209 (350)
Q Consensus       194 ~~~~~~~v~~l~~~~~  209 (350)
                      +..+......+.+.++
T Consensus       339 i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         339 VNQLGHGPQVITTADM  354 (355)
T ss_dssp             ECCCCSSCCEEECCCC
T ss_pred             EeCcCCCccEEEeCCC
Confidence            9866555566655544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.23  E-value=3.6e-11  Score=100.69  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=102.3

Q ss_pred             eCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCcccccccccccccc
Q 045370           74 SGGTTFFVSSSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        74 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      +++++++++++.|++|.+||+.+++++..+.  +...+.+++|+|||++++ +++.++.|.+||+.+++...........
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~   84 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   84 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc
Confidence            4578999999999999999999999998765  455788999999999875 5567899999999976544322111111


Q ss_pred             ceeeeccCCceEEEEecCCe--EEEEe------------CCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCeEE
Q 045370          151 HSVLKGHNGSITALAFSASH--LISAS------------EDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSLLS  214 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~--l~s~~------------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~  214 (350)
                          ..+...+..++|+|++  +++++            .++.+.+||..+++....+..  ....+..+.+++++.+++
T Consensus        85 ----~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          85 ----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             ----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             ----cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence                1122245578999998  54443            467899999988765544432  234566677777777666


Q ss_pred             eeecCcccccc
Q 045370          215 EVSNCQRKLKK  225 (350)
Q Consensus       215 ~~~~~~~~~~~  225 (350)
                       .+.+..+|..
T Consensus       161 -~~~~~~~~~~  170 (346)
T d1jmxb_         161 -AGPDIYKMDV  170 (346)
T ss_dssp             -ESSSEEEECT
T ss_pred             -eCCcceEEEc
Confidence             4444444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=1.7e-10  Score=98.01  Aligned_cols=49  Identities=4%  Similarity=-0.119  Sum_probs=36.0

Q ss_pred             cEEEEECCCceEEEEeccCCCceeEEEEEccCC-eEEeeecCccccccccC
Q 045370          179 TVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS-LLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       179 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~~~~~~~~~~~  228 (350)
                      .|.+||..+++.+..+. +...+.+++|+|||+ ++++.+..+..+.+|+.
T Consensus       295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            58999999999998887 346789999999997 45444444445555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=3.7e-09  Score=87.00  Aligned_cols=195  Identities=12%  Similarity=0.018  Sum_probs=130.3

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++|||+++++...+++|..|+..                            .. ...+......+.++++.+ ++.++
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~----------------------------g~-~~~~~~~~~~~~gla~~~-dG~l~   82 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPD----------------------------GN-QQIHATVEGKVSGLAFTS-NGDLV   82 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT----------------------------CC-EEEEEECSSEEEEEEECT-TSCEE
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCC----------------------------CC-EEEEEcCCCCcceEEEcC-CCCeE
Confidence            5789999999999999999888765                            11 223344556788998865 67888


Q ss_pred             EEEeCCCcEEEEeCCCC--ceEEE--EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeec
Q 045370           81 VSSSLDATCKVWDLGSG--ILIQT--QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKG  156 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  156 (350)
                      ++...++.+..|+....  .....  .........+++.++++++++.+.++.+..++......................
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  162 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC
Confidence            88888888888876543  22222  224456889999999999999888999999888754322111101001111122


Q ss_pred             cCCceEEEEecCCe-EEEEeCCCcEEEEECCCceEEEEe--ccCCCceeEEEEEccCCeEEeeecCcccccc
Q 045370          157 HNGSITALAFSASH-LISASEDKTVCLWDVTRRVSIRRF--NHKKGVVTNLVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       157 ~~~~i~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .......+.+..+. +++.+..+.|+.++..........  .........++++++|.+.++...+++++++
T Consensus       163 ~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         163 VFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             CSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             cccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEE
Confidence            33456778888777 777778889999887654322211  1123456789999999988866666666655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=7.2e-10  Score=97.27  Aligned_cols=138  Identities=11%  Similarity=0.010  Sum_probs=104.0

Q ss_pred             EEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe------cCCceeEEEEcCCCcEEEEEcc---------CCeEEEE
Q 045370           69 GLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV------YPQAVTAIAFHPGEQLLFAGSI---------DGRIFVS  133 (350)
Q Consensus        69 ~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~  133 (350)
                      .+.|.+ +++++..  .|+.+.+||+.+++....+.      +...|.++.|+|||++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            456765 5666553  57889999999998776654      3467999999999999998753         5788999


Q ss_pred             eCCccccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc---------------
Q 045370          134 PLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH---------------  196 (350)
Q Consensus       134 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~---------------  196 (350)
                      |+.++..           ..+..+...+..+.|+|+|  +|. ..++.+++|+..+++.......               
T Consensus        98 d~~~~~~-----------~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1          98 DLNKRQL-----------ITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             ETTTTEE-----------CCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ECCCCcc-----------cccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceee
Confidence            9986532           2566788899999999999  555 4578999999998876554321               


Q ss_pred             ---CCCceeEEEEEccCCeEEeeecCcc
Q 045370          197 ---KKGVVTNLVVIRQSSLLSEVSNCQR  221 (350)
Q Consensus       197 ---~~~~v~~l~~~~~~~~l~~~~~~~~  221 (350)
                         ..+....+.|||||+.|+....+..
T Consensus       166 ~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         166 EEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             eeeecCCccccEECCCCCccceeEecCC
Confidence               1234566889999999998876644

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.97  E-value=1.3e-08  Score=86.81  Aligned_cols=189  Identities=7%  Similarity=-0.051  Sum_probs=113.2

Q ss_pred             ecCCCCEEEEE-eCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee-ccccCCceEEEEeeCCCc-E
Q 045370            3 FSDDGFLLISG-SDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS-LEHKSSVTGLLTISGGTT-F   79 (350)
Q Consensus         3 ~s~dg~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~-~   79 (350)
                      ++|||++|+.. ..++.|.++|+.+                           ......+ ..+...+..+++.+.+.. +
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t---------------------------~k~~~ii~iP~g~gphgi~~spdg~t~Y  131 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDI---------------------------MKTDKITHIPNVQAIHGLRLQKVPKTNY  131 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTT---------------------------TEEEEEEECTTCCCEEEEEECCSSBCCE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCC---------------------------CcEeeEEecCCCCCccceEEeccCCEEE
Confidence            46899988655 4688999999983                           3333332 345677888888664433 4


Q ss_pred             EEEEeCCC-----------------cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC-eE-----------
Q 045370           80 FVSSSLDA-----------------TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG-RI-----------  130 (350)
Q Consensus        80 l~s~~~d~-----------------~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i-----------  130 (350)
                      ++..+.+.                 .+..+|..+.+....+.....+..+.++|+|+++++++.+. .+           
T Consensus       132 V~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             EEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             EEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence            44333332                 23558888888888877778899999999999999887542 22           


Q ss_pred             ---EEEeCCccc-------cc-----ccc----ccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc
Q 045370          131 ---FVSPLKFLL-------LE-----DHF----IVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR  188 (350)
Q Consensus       131 ---~i~d~~~~~-------~~-----~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~  188 (350)
                         .+.+.....       ..     ...    ......+..+... .....+.++|+|   ++++..+++|.+||+.+.
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence               222111000       00     000    0011122233333 335679999999   667788999999998652


Q ss_pred             eE------------EEEeccCCCceeEEEEEccCCeEEeeecCc
Q 045370          189 VS------------IRRFNHKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       189 ~~------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..            ...... .-.....+|+++|..+.+.+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~-glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         291 DDLFEDKIELRDTIVAEPEL-GLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             HHHTTTSSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTT
T ss_pred             hhHhhccCCcceEEEeeccc-ccCcccceecCCceEEEcccccc
Confidence            21            111111 11234457888887766655553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.95  E-value=1.4e-08  Score=85.94  Aligned_cols=191  Identities=7%  Similarity=-0.026  Sum_probs=110.9

Q ss_pred             CeecCCCCEEEEEe-CCCcEEEEeCccccccccccccc-------------cccccccEEEeeccccccce-----eeec
Q 045370            1 MVFSDDGFLLISGS-DDGMICVWSMTRLLKQTSELMHH-------------SDQLDQRLIEMELRSLRSLL-----HYSL   61 (350)
Q Consensus         1 i~~s~dg~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-----~~~~   61 (350)
                      ++|||||++|+++. .++.+.+||+.+.........+.             ....++.++...........     ....
T Consensus       129 ~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~  208 (368)
T d1mdah_         129 IGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             EEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc
Confidence            47999999998776 57999999988643322111111             11122333333222111111     1122


Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------------cCCceeEEEEcCCCcEEEEEccC-
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-------------YPQAVTAIAFHPGEQLLFAGSID-  127 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-  127 (350)
                      .+...+....+.+ ++..+.  ..++.+.+++...+.......             .+.....+++++++..+++...+ 
T Consensus       209 ~~~~~~~~~~~~~-~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         209 AQNCSSQAAQANY-PGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             TSCBCSCCEEETT-TTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccceeeccccc-CcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence            3333444444433 444333  335667777776655443321             11234568889998877765432 


Q ss_pred             --------CeEEEEeCCccccccccccccccceeeeccCCceEEEEecCCe----EEEEeCCCcEEEEECCCceEEEEec
Q 045370          128 --------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH----LISASEDKTVCLWDVTRRVSIRRFN  195 (350)
Q Consensus       128 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~  195 (350)
                              ..|.+||..+++..          ..+. +...+..++|+|++    ++++..|+.|++||..+++.+.++.
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~----------~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTS----------GPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEE----------ECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CceeecCCceEEEEECCCCcEe----------EEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                    35889999865432          2222 33568889999997    4667788999999999999999987


Q ss_pred             cCCCceeEEEE
Q 045370          196 HKKGVVTNLVV  206 (350)
Q Consensus       196 ~~~~~v~~l~~  206 (350)
                      .... ...|++
T Consensus       355 ~g~~-P~~l~~  364 (368)
T d1mdah_         355 LDKG-PESLSV  364 (368)
T ss_dssp             CCSC-CCEEEC
T ss_pred             CCCC-CCEEEE
Confidence            4333 345544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=3.8e-09  Score=92.58  Aligned_cols=150  Identities=16%  Similarity=0.090  Sum_probs=100.1

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      +.|.+|+.++..  .|+.|.+||+.++.....                      ..-..+..|...|.++.|+| ++++|
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~----------------------~~~~~~~~~~~~i~~~~~Sp-Dg~~i   76 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVF----------------------LENSTFDEFGHSINDYSISP-DGQFI   76 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEE----------------------ECTTTTTTSSSCCCEEEECT-TSSEE
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEE----------------------EchhhhhhccCccceeEECC-CCCEE
Confidence            468899987764  578899999984211100                      00013345667899999865 77888


Q ss_pred             EEEeC---------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           81 VSSSL---------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        81 ~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      +.++.         ++.+.+||+.+++......++..+..+.|+|||+.|+... ++.+++|+...+....... ....-
T Consensus        77 ~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~-~~~~~  154 (470)
T d2bgra1          77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKED  154 (470)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTT
T ss_pred             EEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeee-ccCCC
Confidence            77643         5678899999998766666888899999999999999864 7889999988665332111 00000


Q ss_pred             eeeec---------cCCceEEEEecCCe--EEEEeCC
Q 045370          152 SVLKG---------HNGSITALAFSASH--LISASED  177 (350)
Q Consensus       152 ~~~~~---------~~~~i~~~~~~~~~--l~s~~~d  177 (350)
                      ..+.+         ..+....+.|+|+|  |+....|
T Consensus       155 ~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            01111         23345668899999  6666544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=9.7e-08  Score=76.43  Aligned_cols=189  Identities=7%  Similarity=0.002  Sum_probs=115.7

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+++++|+++++....+.+++++-..                           .... ..........++++.+ ++.++
T Consensus        62 vav~~~g~i~v~d~~~~~i~~~~~~~---------------------------~~~~-~~~~~~~~p~~iavd~-~g~i~  112 (260)
T d1rwia_          62 LAVDGAGTVYVTDFNNRVVTLAAGSN---------------------------NQTV-LPFDGLNYPEGLAVDT-QGAVY  112 (260)
T ss_dssp             EEECTTCCEEEEETTTEEEEECTTCS---------------------------CCEE-CCCCSCCSEEEEEECT-TCCEE
T ss_pred             EEEcCCCCEEEeeeeeceeeeeeecc---------------------------ceee-eeeeeeeecccccccc-cceeE
Confidence            46777887777666655555554331                           1111 1122234567787755 56666


Q ss_pred             EEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           81 VSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      ++-..+..+..++......... .........++++++++.+++...++.|..++.......          ........
T Consensus       113 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~----------~~~~~~~~  182 (260)
T d1rwia_         113 VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV----------VLPFTDIT  182 (260)
T ss_dssp             EEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE----------ECCCSSCC
T ss_pred             eeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee----------eeeccccC
Confidence            6666666677777665443222 222345678999999998888888899999987742211          11113345


Q ss_pred             ceEEEEecCCe-EE-EEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          160 SITALAFSASH-LI-SASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       160 ~i~~~~~~~~~-l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      ....+++.+++ |+ +....+.|..++...................|+++++|.++++-....+++++...
T Consensus       183 ~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         183 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            67889999988 44 44456788888776543221112223456899999999887765666666655433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=7.2e-08  Score=77.20  Aligned_cols=188  Identities=8%  Similarity=-0.011  Sum_probs=116.2

Q ss_pred             CeecCCCCEEEEE-eCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISG-SDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      |+++++|+++++. +..+.|..++...                           .........-......+++.+ ++.+
T Consensus        19 vavd~dG~i~v~~~~~~~~i~~~~~~~---------------------------~~~~~~~~~~~~~p~gvav~~-~g~i   70 (260)
T d1rwia_          19 VAVDSAGNVYVTSEGMYGRVVKLATGS---------------------------TGTTVLPFNGLYQPQGLAVDG-AGTV   70 (260)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEC-------------------------------CEEECCCCSCCSCCCEEECT-TCCE
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCC---------------------------ceEEEeccCCccCceEEEEcC-CCCE
Confidence            4678888866654 4456677766552                           111111111123456777755 6677


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccceeeeccCC
Q 045370           80 FVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG  159 (350)
Q Consensus        80 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  159 (350)
                      +++....+.+++++-.++........-..+..++++++++++++-..+..+..++........          .......
T Consensus        71 ~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~  140 (260)
T d1rwia_          71 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----------LPFTGLN  140 (260)
T ss_dssp             EEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE----------CCCCSCC
T ss_pred             EEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeee----------eeecccC
Confidence            777776667777766655544444444567899999999988877777777777765321110          0111123


Q ss_pred             ceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccc
Q 045370          160 SITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKD  226 (350)
Q Consensus       160 ~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~  226 (350)
                      ....+++++++  +++...++.|..+|...................|++.++|.++++.....++.++.
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence            45688999988  56667778899999876544333223445678999999999888666666666553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.80  E-value=7.3e-07  Score=73.23  Aligned_cols=196  Identities=12%  Similarity=0.074  Sum_probs=113.8

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccc-cCCceEEEEeeCCCcE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEH-KSSVTGLLTISGGTTF   79 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~   79 (350)
                      |+|+++|+.|+++...+.|...+.+.......                        .....+. -...+.+++.+ ++.+
T Consensus        76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~------------------------~~~~~g~~~~~pndl~~d~-~G~l  130 (314)
T d1pjxa_          76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIA------------------------KKDSEGRRMQGCNDCAFDY-EGNL  130 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETTSCEEECC------------------------SBCTTSCBCBCCCEEEECT-TSCE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEE------------------------eccccccccCCCcEEEECC-CCCE
Confidence            46888888887777767787777662110000                        0000011 11346677655 5666


Q ss_pred             EEEEeC---------------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCc-----EEEEEccCCeEEEEeCCccc
Q 045370           80 FVSSSL---------------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQ-----LLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        80 l~s~~~---------------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~  139 (350)
                      .++-..               +|.|..++.. ++.......-...+.++|+|++.     ++++-+..+.|..||+....
T Consensus       131 yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g  209 (314)
T d1pjxa_         131 WITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA  209 (314)
T ss_dssp             EEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred             EEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcc
Confidence            555321               2334444433 44443333334457889988764     44455677899999876432


Q ss_pred             cccccccccccceeeec-cCCceEEEEecCCe-E-EEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE-Ee
Q 045370          140 LEDHFIVGEDQHSVLKG-HNGSITALAFSASH-L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL-SE  215 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~  215 (350)
                      ...    .......+.+ +......+++.++| | ++....+.|.+||...++.+..+..+....++++|.|+++.| ++
T Consensus       210 ~~~----~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         210 KIE----NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEE----EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             ccc----eeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence            111    0011111211 22346789999998 4 455567889999999888777776555678999999999755 44


Q ss_pred             eecCccccccc
Q 045370          216 VSNCQRKLKKD  226 (350)
Q Consensus       216 ~~~~~~~~~~~  226 (350)
                      .+..++++++.
T Consensus       286 ~~~~g~i~~~~  296 (314)
T d1pjxa_         286 EHENNAVWKFE  296 (314)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            44556666544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.80  E-value=7.8e-08  Score=81.87  Aligned_cols=204  Identities=8%  Similarity=-0.029  Sum_probs=112.7

Q ss_pred             EEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccc-----cccceeeeccccCCceEEEEeeCCCcEE-EEE
Q 045370           10 LISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRS-----LRSLLHYSLEHKSSVTGLLTISGGTTFF-VSS   83 (350)
Q Consensus        10 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~   83 (350)
                      ++||+.+|.|+||++.+.........-...  ....+..+...     ..........|..........+ +|+++ ++.
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd--~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVD--SATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBC--TTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCC--CCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEc
Confidence            678889999999998753222111110000  00011100000     0011111223444444443334 56655 555


Q ss_pred             eCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcE--EEEEccCCe-----------------EEEEeCCcccccc
Q 045370           84 SLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQL--LFAGSIDGR-----------------IFVSPLKFLLLED  142 (350)
Q Consensus        84 ~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~--l~~~~~dg~-----------------i~i~d~~~~~~~~  142 (350)
                      ..++.|.++|+.+++....+.  +...+..++|+|+++.  ++..+.+..                 +..+|..+.... 
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~-  169 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA-  169 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE-
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee-
Confidence            678899999999998877654  5678999999999984  444333321                 223444332211 


Q ss_pred             ccccccccceeeeccCCceEEEEecCCe--EEEEeC-----------------------------------------CCc
Q 045370          143 HFIVGEDQHSVLKGHNGSITALAFSASH--LISASE-----------------------------------------DKT  179 (350)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~-----------------------------------------dg~  179 (350)
                               ..+.. ......+.++|++  +++++.                                         ++.
T Consensus       170 ---------~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         170 ---------WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             ---------EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             ---------EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence                     11111 2345667778877  443332                                         344


Q ss_pred             EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCccccccccC
Q 045370          180 VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRM  228 (350)
Q Consensus       180 v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~~~~  228 (350)
                      +.+++......+..+..... ...+.++|||+++++++.....+.++++
T Consensus       240 ~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         240 PVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             CEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             EEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            55555555566666665444 5789999999999877776555555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.5e-06  Score=69.36  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=100.3

Q ss_pred             eecCCCCEEEEEeCCC---cEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCc
Q 045370            2 VFSDDGFLLISGSDDG---MICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTT   78 (350)
Q Consensus         2 ~~s~dg~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   78 (350)
                      +|||||+.||......   .+.+.+..                            .........+........|++ ++.
T Consensus        45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~sp-dg~   95 (269)
T d2hqsa1          45 AWSPDGSKLAYVTFESGRSALVIQTLA----------------------------NGAVRQVASFPRHNGAPAFSP-DGS   95 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETT----------------------------TCCEEEEECCSSCEEEEEECT-TSS
T ss_pred             EECCCCCEEEEEEeeccCcceeeeecc----------------------------cCceeEEeeeecccccceecC-CCC
Confidence            6999999998765433   34444444                            233344556677778888866 555


Q ss_pred             EEEE-EeCCCcEEEEe--CCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCe--EEEEeCCccccccccccccccce
Q 045370           79 FFVS-SSLDATCKVWD--LGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGR--IFVSPLKFLLLEDHFIVGEDQHS  152 (350)
Q Consensus        79 ~l~s-~~~d~~v~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~  152 (350)
                      .++. ...++...++.  ....................+++++..++ +...+|.  |...++...           ...
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-----------~~~  164 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-----------APQ  164 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----------CCE
T ss_pred             eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc-----------cce
Confidence            4544 43444433333  33333333334444555666777766544 4444554  444444422           222


Q ss_pred             eeeccCCceEEEEecCCe--EEEE-eCCCc--EEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecC
Q 045370          153 VLKGHNGSITALAFSASH--LISA-SEDKT--VCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNC  219 (350)
Q Consensus       153 ~~~~~~~~i~~~~~~~~~--l~s~-~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~  219 (350)
                      .+..+........|+|++  ++.. ...+.  +.+.|...+..  .+..+........|+|||+.|+-.+..
T Consensus       165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred             eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcC
Confidence            344556677788999998  4444 44444  44445554443  233345667788999999988766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.63  E-value=1.1e-05  Score=64.73  Aligned_cols=179  Identities=7%  Similarity=0.071  Sum_probs=117.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeee------ccccCCceEEEEee
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYS------LEHKSSVTGLLTIS   74 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~   74 (350)
                      |+++++|+++++-...+.|++||.+.                            ..+..+      .+.......+++..
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G----------------------------~~~~~~~~~~~~~~~~~~p~~~~~~~   79 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEG----------------------------RFKFQFGECGKRDSQLLYPNRVAVVR   79 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTS----------------------------CEEEEECCBSSSTTCBSSEEEEEEET
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCC----------------------------CEEEEecccCCCcccccccccccccc
Confidence            57889999888877788999998761                            111111      11222334555555


Q ss_pred             CCCcEEEE-EeCCCcEEEEeCCCCceEEEEe--cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccccc
Q 045370           75 GGTTFFVS-SSLDATCKVWDLGSGILIQTQV--YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGEDQH  151 (350)
Q Consensus        75 ~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  151 (350)
                      ..+..+++ .+.++.|.+++.. +.....+.  .......+++++++..+++....+.+.+++.....           +
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-----------~  147 (279)
T d1q7fa_          80 NSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-----------L  147 (279)
T ss_dssp             TTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------E
T ss_pred             cccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-----------e
Confidence            44444443 3445677777754 55555553  33557889999999988888878888888765211           1


Q ss_pred             eee--eccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec--cCCCceeEEEEEccCCeEEeeecCc
Q 045370          152 SVL--KGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN--HKKGVVTNLVVIRQSSLLSEVSNCQ  220 (350)
Q Consensus       152 ~~~--~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~~~  220 (350)
                      ..+  ..+......+++.+++  +++....+.|++||.. ++.+.++.  +.......+++.++|+++++-..+.
T Consensus       148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             ecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCC
Confidence            111  2355678889999988  6666778899999975 56676764  3444678999999999877544433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.56  E-value=9.7e-06  Score=65.94  Aligned_cols=185  Identities=14%  Similarity=0.050  Sum_probs=114.9

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      |+|++||+++++...++.+.+|+.....                        .................+++.+ ++.++
T Consensus        73 la~~~dG~l~v~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~n~i~~~~-~g~~~  127 (302)
T d2p4oa1          73 LAFTSNGDLVATGWNADSIPVVSLVKSD------------------------GTVETLLTLPDAIFLNGITPLS-DTQYL  127 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTT------------------------SCEEEEEECTTCSCEEEEEESS-SSEEE
T ss_pred             EEEcCCCCeEEEecCCceEEEEEecccc------------------------cceeeccccCCccccceeEEcc-CCCEE
Confidence            5789999999988888888888765210                        0001111122345567787755 67888


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec-----------CCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccccccccc
Q 045370           81 VSSSLDATCKVWDLGSGILIQTQVY-----------PQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHFIVGED  149 (350)
Q Consensus        81 ~s~~~d~~v~vwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  149 (350)
                      ++.+.++.+..++...+........           ......+.++. +..+++.+..+.|+.++.........      
T Consensus       128 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~------  200 (302)
T d2p4oa1         128 TADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGE------  200 (302)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCC------
T ss_pred             eeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccc------
Confidence            8888888888888887754433221           12345566653 44556667788998888764321110      


Q ss_pred             cceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCce-EEEEeccCCCceeEEEE---EccCCeEEeeecC
Q 045370          150 QHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRV-SIRRFNHKKGVVTNLVV---IRQSSLLSEVSNC  219 (350)
Q Consensus       150 ~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~---~~~~~~l~~~~~~  219 (350)
                        ............+++.++|  +++...++.|..++..... .+..........++++|   ++|++.|+.++..
T Consensus       201 --~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         201 --PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             --CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --cccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence              0111223445679999998  5555578889999876433 23334434456789999   6778877755543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.55  E-value=3.3e-06  Score=70.86  Aligned_cols=160  Identities=12%  Similarity=0.026  Sum_probs=94.0

Q ss_pred             CeecCCCCEEEEEeC-CCcEEEEeCccccccccccccccccccccEEEeecccccccee--eeccccCCceEEEEeeCCC
Q 045370            1 MVFSDDGFLLISGSD-DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLH--YSLEHKSSVTGLLTISGGT   77 (350)
Q Consensus         1 i~~s~dg~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~   77 (350)
                      +.|+|||++|++++. ...|.+|+......                        .....  ...........++|++.+.
T Consensus       150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~------------------------~~~~~~~~~~~~g~gPr~i~f~pdg~  205 (365)
T d1jofa_         150 MVFDPTETYLYSADLTANKLWTHRKLASGE------------------------VELVGSVDAPDPGDHPRWVAMHPTGN  205 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSC------------------------EEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEEEccCCCc------------------------eeeccceeecCCCCceEEEEECCCCc
Confidence            479999998887764 45788887652100                        00011  1122345678888877544


Q ss_pred             cEEEEEeCCCcEEEEeCCCCceEEE-----Eec---------------CCceeEEEEcCCCcEEEEEcc------CCeEE
Q 045370           78 TFFVSSSLDATCKVWDLGSGILIQT-----QVY---------------PQAVTAIAFHPGEQLLFAGSI------DGRIF  131 (350)
Q Consensus        78 ~~l~s~~~d~~v~vwd~~~~~~~~~-----~~~---------------~~~v~~~~~~~~~~~l~~~~~------dg~i~  131 (350)
                      ...++...+++|.+|++..+.....     ...               ......+.++|+|++++++..      .+.|.
T Consensus       206 ~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~  285 (365)
T d1jofa_         206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence            4556666789999999877643322     110               113557899999999988743      23366


Q ss_pred             EEeCCccccccccccccccceeeeccCCceEEEEecC-Ce--E-EEEeCCCcEEEEECCCc
Q 045370          132 VSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSA-SH--L-ISASEDKTVCLWDVTRR  188 (350)
Q Consensus       132 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--l-~s~~~dg~v~iwd~~~~  188 (350)
                      .|++.......    ................+++++| ++  | ++...++.|.+|+++..
T Consensus       286 ~~~~~~~g~~~----~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         286 GFKLRDCGSIE----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECTTSCEE----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEecCCCcee----eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            66655321110    0000011122334567799998 55  4 44457799999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.53  E-value=1.4e-05  Score=66.86  Aligned_cols=162  Identities=10%  Similarity=0.003  Sum_probs=94.7

Q ss_pred             CCceEEEEeeCCCcEEEEEe-CCCcEEEEeCCCC-ceEEE--E---ecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCC
Q 045370           65 SSVTGLLTISGGTTFFVSSS-LDATCKVWDLGSG-ILIQT--Q---VYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLK  136 (350)
Q Consensus        65 ~~v~~~~~~~~~~~~l~s~~-~d~~v~vwd~~~~-~~~~~--~---~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~  136 (350)
                      ..+.++.|+| ++++++++. ....|.+|+.... .....  .   ......+.++|+|+++++++.. .++.|.+|++.
T Consensus       145 ~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3567888866 666555554 3457888876543 32222  1   1345789999999999886655 57899999987


Q ss_pred             ccccccccccccc---------cceeeeccCCceEEEEecCCe--EEEEe-CC-----CcEEEEECCCc-eEEE-----E
Q 045370          137 FLLLEDHFIVGED---------QHSVLKGHNGSITALAFSASH--LISAS-ED-----KTVCLWDVTRR-VSIR-----R  193 (350)
Q Consensus       137 ~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~--l~s~~-~d-----g~v~iwd~~~~-~~~~-----~  193 (350)
                      .............         .......+......+.++|++  |+++. .+     +.|..|++... ....     .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            5432211000000         000111233456788999999  54443 22     23777777542 2211     1


Q ss_pred             eccCCCceeEEEEEc-cCCeEEeeecCcccccccc
Q 045370          194 FNHKKGVVTNLVVIR-QSSLLSEVSNCQRKLKKDR  227 (350)
Q Consensus       194 ~~~~~~~v~~l~~~~-~~~~l~~~~~~~~~~~~~~  227 (350)
                      ..........++++| +|++|+++......+.++.
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            122334567899998 7999988876655554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.51  E-value=3e-05  Score=63.45  Aligned_cols=186  Identities=10%  Similarity=0.080  Sum_probs=111.4

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++|+++|+++++-...+.|..|+.+                           .................+++.+ ++.++
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~---------------------------g~~~~~~~~~~~~~p~gla~~~-dG~l~   96 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPE---------------------------TKEIKRPFVSHKANPAAIKIHK-DGRLF   96 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTT---------------------------TCCEEEEEECSSSSEEEEEECT-TSCEE
T ss_pred             CEECCCCCEEEEECCCCEEEEEECC---------------------------CCeEEEEEeCCCCCeeEEEECC-CCCEE
Confidence            3688999877777778888888876                           2333333344455677888855 66766


Q ss_pred             EEEeC----CCcEEEEeCCCCceEEEEec---CCceeEEEEcCCCcEEEEEcc------CCeEEEEeCCccccccccccc
Q 045370           81 VSSSL----DATCKVWDLGSGILIQTQVY---PQAVTAIAFHPGEQLLFAGSI------DGRIFVSPLKFLLLEDHFIVG  147 (350)
Q Consensus        81 ~s~~~----d~~v~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  147 (350)
                      ++...    .+.+...+...+........   ...+..+.++++|++.++...      .+.+..++...          
T Consensus        97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg----------  166 (319)
T d2dg1a1          97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----------  166 (319)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----------
T ss_pred             EEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc----------
Confidence            65433    23355555555554444332   234778999999986665432      12344444331          


Q ss_pred             cccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCc----eEEE----EeccCCCceeEEEEEccCCeEEee
Q 045370          148 EDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRR----VSIR----RFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       148 ~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~----~~~~----~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                       ..+..+...-...+.++|+|++   +++-+..+.|+.||+...    ....    ...........+++.++|++.++.
T Consensus       167 -~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         167 -RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             -CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             -ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence             1111222233456789999987   455567889999997631    1111    111122345789999999987766


Q ss_pred             ecCcccccc
Q 045370          217 SNCQRKLKK  225 (350)
Q Consensus       217 ~~~~~~~~~  225 (350)
                      ...+++..+
T Consensus       246 ~~~g~V~~~  254 (319)
T d2dg1a1         246 YGQGRVLVF  254 (319)
T ss_dssp             ETTTEEEEE
T ss_pred             cCCCEEEEE
Confidence            666655544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.47  E-value=5e-05  Score=62.12  Aligned_cols=150  Identities=11%  Similarity=-0.003  Sum_probs=90.2

Q ss_pred             CceEEEEeeCCCcEEEEEeC------CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEE-ccCCeEEEEeCCcc
Q 045370           66 SVTGLLTISGGTTFFVSSSL------DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPLKFL  138 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  138 (350)
                      ....+++.+ ++.+.++...      .+.+..++...+........-...+.++|+|+++.|+.+ +..+.|+.|++...
T Consensus       131 ~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         131 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            356676655 6665555322      123555555544433333333456789999999866554 56789999987642


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEecc------CCCceeEEEEEccC
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNH------KKGVVTNLVVIRQS  210 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~  210 (350)
                      ......  .................|++.++|  +++....+.|.+||. .++.+.++..      +...+++++|.|.+
T Consensus       210 g~~~~~--~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         210 GVTIQP--FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             SSSEEE--EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             Cceecc--ccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            211000  000000111122346789999998  455557899999996 6888887752      33457899999988


Q ss_pred             CeEEeeecC
Q 045370          211 SLLSEVSNC  219 (350)
Q Consensus       211 ~~l~~~~~~  219 (350)
                      ..++.+..+
T Consensus       287 ~~~~~t~~~  295 (319)
T d2dg1a1         287 NQLIICSND  295 (319)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEcCC
Confidence            777655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=3.7e-05  Score=61.56  Aligned_cols=142  Identities=8%  Similarity=0.086  Sum_probs=97.1

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---cCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---YPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      .......++..+ ++.++++....+.+.+++.. ++.+..+.   +......++++++++.+++....+.|++||.....
T Consensus       112 ~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~  189 (279)
T d1q7fa_         112 ILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY  189 (279)
T ss_dssp             TCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred             cccccceecccc-CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce
Confidence            344556777654 56667776667778888855 55565553   34567889999999988888888999999975321


Q ss_pred             cccccccccccceee--eccCCceEEEEecCCe-EEEEe--CCCcEEEEECCCceEEEEecc--CCCceeEEEEEccCCe
Q 045370          140 LEDHFIVGEDQHSVL--KGHNGSITALAFSASH-LISAS--EDKTVCLWDVTRRVSIRRFNH--KKGVVTNLVVIRQSSL  212 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-l~s~~--~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~  212 (350)
                                 +..+  .+.......|++.+++ ++.+.  .++.|.+|+. +|+.+.++..  .......|++.|+|.+
T Consensus       190 -----------~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         190 -----------LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             -----------EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             -----------eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence                       1122  2344567899999999 44443  3457999985 5887777642  2345789999999987


Q ss_pred             EEeeecC
Q 045370          213 LSEVSNC  219 (350)
Q Consensus       213 l~~~~~~  219 (350)
                      ++ ++.+
T Consensus       258 ~V-~~~n  263 (279)
T d1q7fa_         258 VL-ASKD  263 (279)
T ss_dssp             EE-EETT
T ss_pred             EE-EeCC
Confidence            66 4443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=7.9e-05  Score=58.94  Aligned_cols=161  Identities=11%  Similarity=0.073  Sum_probs=97.3

Q ss_pred             ccceeeeccccCCceEEEEeeCCCcEEEEEeCCC---cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-CCe
Q 045370           54 RSLLHYSLEHKSSVTGLLTISGGTTFFVSSSLDA---TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-DGR  129 (350)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~  129 (350)
                      +.....+..+...+..-+|+| +|+.||-.....   .+.+.+...+.......+........|+|+|..++.... ++.
T Consensus        28 G~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCc
Confidence            333444455677788889966 666666543333   466777777777766778888899999999998876553 333


Q ss_pred             EEEEeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCC--cEEEEECCCceEEEEeccCCCceeEE
Q 045370          130 IFVSPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDK--TVCLWDVTRRVSIRRFNHKKGVVTNL  204 (350)
Q Consensus       130 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l  204 (350)
                      ..++.....         ..................+++++   +++...+|  .|.+.++..+... .+..+.......
T Consensus       107 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~  176 (269)
T d2hqsa1         107 LNLYVMDLA---------SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA  176 (269)
T ss_dssp             CEEEEEETT---------TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEE
T ss_pred             cceeecccc---------cccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccccccccc
Confidence            333322211         11111222333444455566655   55555555  4556666655433 333355677788


Q ss_pred             EEEccCCeEEeeecCcccccc
Q 045370          205 VVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      .|+|+++.++..+.......+
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i  197 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHI  197 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEE
T ss_pred             ccccccceeEEEeecCCceee
Confidence            999999998877766544333

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.31  E-value=0.00023  Score=57.24  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=94.3

Q ss_pred             CceEEEEeeCCCcEEEEEeC----CCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEE-EEccCCeEEEEeCCcccc
Q 045370           66 SVTGLLTISGGTTFFVSSSL----DATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFLLL  140 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~  140 (350)
                      .++.+.+.+ ++.+.++...    .+.-.+|.+..++.......-...+.++|+++++.++ +-+..+.|+.|++.....
T Consensus       104 ~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         104 RSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             cceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            456666655 5555544332    2344677777776665555445678899999998665 445678899988753211


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe-EEEEe-CCCcEEEEECCCceEEEEeccCCCceeEEEEE-ccCCeEEeee
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH-LISAS-EDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI-RQSSLLSEVS  217 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~  217 (350)
                      ...  ..........+..+....+++..+| |.++. ..+.|..||. .++.+..+......+++++|- |+.+.|+.++
T Consensus       183 ~~~--~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         183 LPT--GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             CBS--SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ccc--cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            100  0001111223345668889999998 55554 5678999995 588888887666679999997 6766665544


Q ss_pred             c
Q 045370          218 N  218 (350)
Q Consensus       218 ~  218 (350)
                      .
T Consensus       260 a  260 (295)
T d2ghsa1         260 A  260 (295)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.08  E-value=0.0003  Score=57.16  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             CCceEEEEeeCCC----cEEEEEeCCCcEEEEeCCCCceEEE---E-e----cCCceeEEEEcCCCcEEEEEccCCeEEE
Q 045370           65 SSVTGLLTISGGT----TFFVSSSLDATCKVWDLGSGILIQT---Q-V----YPQAVTAIAFHPGEQLLFAGSIDGRIFV  132 (350)
Q Consensus        65 ~~v~~~~~~~~~~----~~l~s~~~d~~v~vwd~~~~~~~~~---~-~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i  132 (350)
                      ...+.++|.+.+.    .++++-+..+.|..||+.....+..   + .    .......++++++|+..++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            3456788877432    2555566778888888764332221   1 1    1234568999999998887777899999


Q ss_pred             EeCCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECC
Q 045370          133 SPLKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVT  186 (350)
Q Consensus       133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~  186 (350)
                      ||...+.          ....+......+++++|.|++   +++.+.+|.|.-+++.
T Consensus       252 ~dp~~g~----------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQ----------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBS----------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCE----------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9977432          222444555678999999987   5666777888888864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.96  E-value=0.002  Score=50.65  Aligned_cols=93  Identities=8%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             eecCC--CCEEEEEeCCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcE
Q 045370            2 VFSDD--GFLLISGSDDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTF   79 (350)
Q Consensus         2 ~~s~d--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   79 (350)
                      ..|||  |+++|-.+ +|.|.+.|+.                            ......+..+.+.+...+|+| +++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~----------------------------~g~~~~Lt~~~~~~~~p~~SP-DG~~   54 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLK----------------------------SGSTRKIVSNLGVINNARFFP-DGRK   54 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETT----------------------------TCCEEEEECSSSEEEEEEECT-TSSE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECC----------------------------CCCEEEEecCCCcccCEEECC-CCCE
Confidence            46899  99888764 4678888887                            233344555667778888866 6666


Q ss_pred             EEEE-eCCC-----cEEEEeCCCCceEEEEec-------CCceeEEEEcCCCcEEEEE
Q 045370           80 FVSS-SLDA-----TCKVWDLGSGILIQTQVY-------PQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        80 l~s~-~~d~-----~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~  124 (350)
                      |+-. ..++     .|.+++..++........       ........|+|+|+.|+..
T Consensus        55 iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          55 IAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            6643 3232     377778877766544221       1245678899999988764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00026  Score=60.94  Aligned_cols=185  Identities=11%  Similarity=0.025  Sum_probs=98.7

Q ss_pred             eecCCCCEEEEEe---------CCCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEE
Q 045370            2 VFSDDGFLLISGS---------DDGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLT   72 (350)
Q Consensus         2 ~~s~dg~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   72 (350)
                      .|||||++++...         ..+.+.++|+.+..                         ...+.........+....|
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-------------------------~~~l~~~~~~~~~l~~~~w  121 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------------------PQSLDPPEVSNAKLQYAGW  121 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-------------------------CEECCCTTCCSCCCSBCCB
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-------------------------eeeccCccCCccccceeee
Confidence            4899999887764         34677888887311                         0111111222334445667


Q ss_pred             eeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec--C-----------------CceeEEEEcCCCcEEEEEccC-CeEEE
Q 045370           73 ISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY--P-----------------QAVTAIAFHPGEQLLFAGSID-GRIFV  132 (350)
Q Consensus        73 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~-----------------~~v~~~~~~~~~~~l~~~~~d-g~i~i  132 (350)
                      +| +++.+|-.. ++.|.+.+..++...+....  .                 +.-..+-|+|||++|+....| ..|..
T Consensus       122 SP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~  199 (465)
T d1xfda1         122 GP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI  199 (465)
T ss_dssp             CS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred             cc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccce
Confidence            55 666666554 67788888877665544321  1                 112467799999999887533 44444


Q ss_pred             EeCCccccc---c----ccc-------------c---ccc-cc-----eeeeccCCceEEEEecCCe-EEEE--eCC---
Q 045370          133 SPLKFLLLE---D----HFI-------------V---GED-QH-----SVLKGHNGSITALAFSASH-LISA--SED---  177 (350)
Q Consensus       133 ~d~~~~~~~---~----~~~-------------~---~~~-~~-----~~~~~~~~~i~~~~~~~~~-l~s~--~~d---  177 (350)
                      +.+......   .    ...             .   ... ..     .........+..+.|+|++ ++..  ..+   
T Consensus       200 ~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~  279 (465)
T d1xfda1         200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (465)
T ss_dssp             EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             eecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccccc
Confidence            433211000   0    000             0   000 00     0011122346788999998 3332  222   


Q ss_pred             CcEEEEECCCceEEEEecc-CCCc----eeEEEEEccCCeE
Q 045370          178 KTVCLWDVTRRVSIRRFNH-KKGV----VTNLVVIRQSSLL  213 (350)
Q Consensus       178 g~v~iwd~~~~~~~~~~~~-~~~~----v~~l~~~~~~~~l  213 (350)
                      ..|.++|..++++...+.. ..+.    -....|+|+|+.+
T Consensus       280 ~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             ceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            2588899999876554432 1221    2345788888743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00011  Score=63.34  Aligned_cols=141  Identities=12%  Similarity=0.096  Sum_probs=90.9

Q ss_pred             EEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec----CCceeEEEEcCCCcEEEEEc---------cCCeEEEEeCCc
Q 045370           71 LTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY----PQAVTAIAFHPGEQLLFAGS---------IDGRIFVSPLKF  137 (350)
Q Consensus        71 ~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~  137 (350)
                      .|.+ ++.++. -..+|.|.+||+.+++....+..    .-.+....|+||+++++...         ..+.+.+||+.+
T Consensus        23 ~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            4654 445443 35678899999998876544432    23577888999999887763         357889999886


Q ss_pred             cccccccccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEec-cCCC---------------
Q 045370          138 LLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFN-HKKG---------------  199 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~---------------  199 (350)
                      +....        +.........+....|||+|  +|-.. ++.|++.+..++..+.... +..+               
T Consensus       101 ~~~~~--------l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1         101 GDPQS--------LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             CCCEE--------CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             Cceee--------ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence            54321        11112233455668899999  54443 6789999887765544332 1111               


Q ss_pred             --ceeEEEEEccCCeEEeeecCccc
Q 045370          200 --VVTNLVVIRQSSLLSEVSNCQRK  222 (350)
Q Consensus       200 --~v~~l~~~~~~~~l~~~~~~~~~  222 (350)
                        .-.++.|||||+.|+...-+...
T Consensus       172 ~~~~~a~~WSPDgk~iaf~~~D~s~  196 (465)
T d1xfda1         172 LKTHIAHWWSPDGTRLAYAAINDSR  196 (465)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             ccccceEEECCCCCeEEEEEecccc
Confidence              12467799999999987765443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.51  E-value=0.014  Score=46.38  Aligned_cols=148  Identities=12%  Similarity=0.017  Sum_probs=91.5

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-----CCceeEEEEcCCCcEEEEEcc----CCeEEEEe
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-----PQAVTAIAFHPGEQLLFAGSI----DGRIFVSP  134 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d  134 (350)
                      ...+.++++.+ ++.+++ ++.+ .+.++|..+++.......     ...++.+.++|+|++.++...    .+.-.+|.
T Consensus        58 ~~~~~~i~~~~-dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          58 PFMGSALAKIS-DSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SSCEEEEEEEE-TTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcEEEEEec-CCCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            45677888766 555554 4555 588999999886654332     124788999999987665432    12334444


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC------c--eEEEEeccCCCceeE
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR------R--VSIRRFNHKKGVVTN  203 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~------~--~~~~~~~~~~~~v~~  203 (350)
                      +..+..           ..+...-...+.++|++++   +++-+..+.|+.|++..      +  .....+....+....
T Consensus       135 ~~~g~~-----------~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         135 VAKGKV-----------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             EETTEE-----------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             ecCCcE-----------EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            432211           1222223456789999988   56666788899998742      1  122233344556788


Q ss_pred             EEEEccCCeEEeeecCcccccc
Q 045370          204 LVVIRQSSLLSEVSNCQRKLKK  225 (350)
Q Consensus       204 l~~~~~~~~l~~~~~~~~~~~~  225 (350)
                      +++..+|.+.++.-..+++..+
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~  225 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRY  225 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEE
T ss_pred             eEEcCCCCEEeeeeCCCceEEe
Confidence            9999999988765555555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.032  Score=43.36  Aligned_cols=150  Identities=13%  Similarity=-0.001  Sum_probs=87.9

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-CCceeEEEEcCCCcEEEEEcc-C--CeEEEEeCCccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLFAGSI-D--GRIFVSPLKFLL  139 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~  139 (350)
                      ...+.++++...++.+.++-...+.|.+.++........... ...+..++++|...+++-... .  ..|..-++... 
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-  156 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-  156 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-
Confidence            356788888766666666767778999999986654443332 356889999997766654432 2  23444444321 


Q ss_pred             cccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          140 LEDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                               .........-.....+++.+..  | ++-...+.|...|+........+.+.. ...+|++.  +..|..+
T Consensus       157 ---------~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwt  224 (263)
T d1npea_         157 ---------NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYT  224 (263)
T ss_dssp             ---------CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEE
T ss_pred             ---------CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEE
Confidence                     1111222233466889998665  4 444567889999997655433344333 33567775  4555545


Q ss_pred             ec-Cccccccc
Q 045370          217 SN-CQRKLKKD  226 (350)
Q Consensus       217 ~~-~~~~~~~~  226 (350)
                      .. ...++.+.
T Consensus       225 d~~~~~I~~~~  235 (263)
T d1npea_         225 DWKTNSVIAMD  235 (263)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCEEEEEE
Confidence            43 34444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.73  E-value=0.044  Score=45.23  Aligned_cols=98  Identities=12%  Similarity=0.046  Sum_probs=61.6

Q ss_pred             EEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCC---------------eEEEEeCCcccc----------ccc
Q 045370           89 CKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDG---------------RIFVSPLKFLLL----------EDH  143 (350)
Q Consensus        89 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~~~~~----------~~~  143 (350)
                      +.++|..+.+....+........+.++++|+++++.+.+.               .+.+++......          ...
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            6788999998888887778888999999999999876431               233344321110          000


Q ss_pred             cccc-----c-ccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCC
Q 045370          144 FIVG-----E-DQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTR  187 (350)
Q Consensus       144 ~~~~-----~-~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~  187 (350)
                      ..+.     . .....+. -......+.++|+|   ++++.-+.++.|+|++.
T Consensus       255 ~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            0000     0 1111111 12345678899999   66666899999999964

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.66  E-value=0.039  Score=42.72  Aligned_cols=132  Identities=9%  Similarity=0.012  Sum_probs=73.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEcc-C-----CeEEEEeCCcccccccccccccc
Q 045370           77 TTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSI-D-----GRIFVSPLKFLLLEDHFIVGEDQ  150 (350)
Q Consensus        77 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~  150 (350)
                      |+.++-.+ ++.|.+.|+.+++......+.......+|+|||+.|+-... +     ..|.+++...+.........   
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~---   87 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS---   87 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC---
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC---
Confidence            55565543 56688889999888776667788899999999998875532 2     24667776654322100000   


Q ss_pred             ceeeeccCCceEEEEecCCe--EEEEeC------CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          151 HSVLKGHNGSITALAFSASH--LISASE------DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       151 ~~~~~~~~~~i~~~~~~~~~--l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                       ..............|+|++  ++....      ...+...+...+......   ........+.+.+..++..
T Consensus        88 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  157 (281)
T d1k32a2          88 -GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRN  157 (281)
T ss_dssp             -EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEES
T ss_pred             -CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEee
Confidence             0111122345678899998  444322      123556666655543322   2333333344444444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.13  Score=39.83  Aligned_cols=149  Identities=12%  Similarity=-0.018  Sum_probs=90.7

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-CCceeEEEEcCCCcEEE-EEccCCeEEEEeCCcc
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQVY-PQAVTAIAFHPGEQLLF-AGSIDGRIFVSPLKFL  138 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~  138 (350)
                      ..+...+.+++|...++..+.+-..++.|...+++.......... -..+..++++.-+..|+ +-...+.|.+.++...
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            344456788888876666666666778898888876655444432 35688999987565555 5556689999888732


Q ss_pred             ccccccccccccceeeeccCCceEEEEecCCe--EEEEe-C--CCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeE
Q 045370          139 LLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISAS-E--DKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLL  213 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~-~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  213 (350)
                      ..          ...+......+..++++|..  ++... .  ...|.--++.................++++.+.++.|
T Consensus       112 ~~----------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         112 QR----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             SC----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             eE----------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEE
Confidence            11          11222233567899999866  33222 2  2234444565433222222233456899999888877


Q ss_pred             EeeecC
Q 045370          214 SEVSNC  219 (350)
Q Consensus       214 ~~~~~~  219 (350)
                      ..+...
T Consensus       182 Yw~d~~  187 (263)
T d1npea_         182 CWVDAG  187 (263)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.46  E-value=0.15  Score=44.36  Aligned_cols=47  Identities=11%  Similarity=0.102  Sum_probs=34.1

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeee
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVS  217 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~  217 (350)
                      +++|+.||.++-+|.++|+.+.++.-... .-.-+.|..+|+ |+++..
T Consensus       478 Vf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            77799999999999999999998863211 222356777885 565443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.22  Score=38.44  Aligned_cols=148  Identities=11%  Similarity=-0.013  Sum_probs=86.8

Q ss_pred             cccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCc----eEEEEe-cCCceeEEEEcCCCcEEEEE-ccCCeEEEEeC
Q 045370           62 EHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGI----LIQTQV-YPQAVTAIAFHPGEQLLFAG-SIDGRIFVSPL  135 (350)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~  135 (350)
                      .....+.++.|....+.++.+-..++.|.-.++....    ...... ....+..+++++.+..|+.+ ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3445677888877665555555566777766665322    111122 23457789998766555544 55688999988


Q ss_pred             CccccccccccccccceeeeccCCceEEEEecCCe--EEEE--eCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCC
Q 045370          136 KFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASH--LISA--SEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSS  211 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  211 (350)
                      ....          ..............++++|..  +...  +..+.|.-.++.................++++.+.+.
T Consensus       107 ~g~~----------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~  176 (266)
T d1ijqa1         107 KGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG  176 (266)
T ss_dssp             TSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred             CCce----------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeecccc
Confidence            7321          112333444567889998854  3333  2345677777765433333333345678999999888


Q ss_pred             eEEeeecC
Q 045370          212 LLSEVSNC  219 (350)
Q Consensus       212 ~l~~~~~~  219 (350)
                      .|..+...
T Consensus       177 ~lYw~d~~  184 (266)
T d1ijqa1         177 RLYWVDSK  184 (266)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            77766554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.02  E-value=0.1  Score=43.02  Aligned_cols=129  Identities=12%  Similarity=0.012  Sum_probs=76.2

Q ss_pred             EEEEeCCC---CceEEEEecCCceeEEEEcCCCcEEEEEc-cCCeEEEEeCCcccccccccc-ccccceeeeccCCceEE
Q 045370           89 CKVWDLGS---GILIQTQVYPQAVTAIAFHPGEQLLFAGS-IDGRIFVSPLKFLLLEDHFIV-GEDQHSVLKGHNGSITA  163 (350)
Q Consensus        89 v~vwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  163 (350)
                      +.+-|...   ...+..++.+.....+.++|||+++++++ .+..+.++|++.....-.... ....+.......-....
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            45555543   23444566666788899999999988766 579999999985432110000 00111111112334555


Q ss_pred             EEecCCe--EEEEeCCCcEEEEECCCc----------eEEEEeccCCCc-----eeEEEEEccCCeEEeee
Q 045370          164 LAFSASH--LISASEDKTVCLWDVTRR----------VSIRRFNHKKGV-----VTNLVVIRQSSLLSEVS  217 (350)
Q Consensus       164 ~~~~~~~--l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~-----v~~l~~~~~~~~l~~~~  217 (350)
                      -+|...|  ..|---|..|.-|++...          ..+..+..|..+     ..+-...|+|++|++..
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            6788877  444457999999998532          455566544332     11123468899999765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.3  Score=37.60  Aligned_cols=150  Identities=13%  Similarity=0.011  Sum_probs=88.0

Q ss_pred             cCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cCCceeEEEEcCCCcEEEEEc--cCCeEEEEeCCcccc
Q 045370           64 KSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV-YPQAVTAIAFHPGEQLLFAGS--IDGRIFVSPLKFLLL  140 (350)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~  140 (350)
                      ...+.++++...++.+..+-...+.|.+.++.......... .......++++|...+++...  ..+.|.-.++...  
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--  153 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--  153 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC--
Confidence            35567788876667777777777899999998766544433 345688999999665555443  3345666655421  


Q ss_pred             ccccccccccceeeeccCCceEEEEecCCe--E-EEEeCCCcEEEEECCCceE--EEEeccCCCceeEEEEEccCCeEEe
Q 045370          141 EDHFIVGEDQHSVLKGHNGSITALAFSASH--L-ISASEDKTVCLWDVTRRVS--IRRFNHKKGVVTNLVVIRQSSLLSE  215 (350)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~  215 (350)
                              .........-...+.+++.+.+  | ++-...+.|...|+.....  +...........+|++.  +..|..
T Consensus       154 --------~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~  223 (266)
T d1ijqa1         154 --------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW  223 (266)
T ss_dssp             --------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred             --------ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEE
Confidence                    1111222233567889998765  4 4445678888888865432  22222222344566666  444554


Q ss_pred             ee-cCcccccc
Q 045370          216 VS-NCQRKLKK  225 (350)
Q Consensus       216 ~~-~~~~~~~~  225 (350)
                      +. ....++++
T Consensus       224 td~~~~~I~~~  234 (266)
T d1ijqa1         224 TDIINEAIFSA  234 (266)
T ss_dssp             EETTTTEEEEE
T ss_pred             EECCCCeEEEE
Confidence            44 33444444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.51  E-value=0.38  Score=37.41  Aligned_cols=158  Identities=12%  Similarity=0.074  Sum_probs=88.2

Q ss_pred             ccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEe-c----CCceeEEEEcCCCcEEEEEc---c----CCe
Q 045370           63 HKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSG-ILIQTQV-Y----PQAVTAIAFHPGEQLLFAGS---I----DGR  129 (350)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~---~----dg~  129 (350)
                      ...+|.-..|.+++  .|+..+ +..|.-|+++.. .+...+. |    ...|-.-..++++++++..+   .    .|.
T Consensus       101 ~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~  177 (327)
T d1utca2         101 MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  177 (327)
T ss_dssp             CSSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred             cCCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEE
Confidence            44677777887643  355544 467999998543 3343333 2    23466666677777665432   1    356


Q ss_pred             EEEEeCCccccc---------------cc------ccc-----c---------------ccc-----ceee---eccCCc
Q 045370          130 IFVSPLKFLLLE---------------DH------FIV-----G---------------EDQ-----HSVL---KGHNGS  160 (350)
Q Consensus       130 i~i~d~~~~~~~---------------~~------~~~-----~---------------~~~-----~~~~---~~~~~~  160 (350)
                      +.+|..+.....               ..      +..     .               ..+     ...+   ....+-
T Consensus       178 mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF  257 (327)
T d1utca2         178 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  257 (327)
T ss_dssp             EEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC
T ss_pred             EEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc
Confidence            677766543100               00      000     0               000     0000   001233


Q ss_pred             eEEEEecCCe--EEEEeCCCcEEEEECCCceEEEEeccCCCceeEEEEEccCCeEEeeecCcccc
Q 045370          161 ITALAFSASH--LISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKL  223 (350)
Q Consensus       161 i~~~~~~~~~--l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~  223 (350)
                      ..++..++..  +..-+.-|.|++||+.++.++..-.....+|..-+-+....-+++....+.++
T Consensus       258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            4455555554  66677889999999999999988776667776555555544455455555544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.05  E-value=0.24  Score=42.95  Aligned_cols=50  Identities=6%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeeecCc
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVSNCQ  220 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~~~~  220 (350)
                      ++.|+.||.++-+|.++|+.+.++....+ .-.-+.|..+|+ +|++.+..+
T Consensus       472 VF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         472 VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             EEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            67789999999999999999999873222 112256777885 666555443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.46  Score=38.57  Aligned_cols=139  Identities=8%  Similarity=-0.023  Sum_probs=70.5

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEE-EecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCcccccccc
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQT-QVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDHF  144 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  144 (350)
                      .|..++|+. +  .++.. .++.+..++...-..... .....++..+.++|.  .++....+|.+.++++.........
T Consensus        88 ~v~~vafs~-d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHG-D--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEET-T--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeC-C--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence            577788843 2  34443 456688888776443333 334567888887764  5566666899999998865321100


Q ss_pred             ccccccceeeeccCCceEEEEecCCe--EEEEeCCCcEEEE-ECCCceEEEEeccCCCceeEEEEEccCCeEEee
Q 045370          145 IVGEDQHSVLKGHNGSITALAFSASH--LISASEDKTVCLW-DVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEV  216 (350)
Q Consensus       145 ~~~~~~~~~~~~~~~~i~~~~~~~~~--l~s~~~dg~v~iw-d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  216 (350)
                        .  .+..+. -.+.+.++.|++.+  ++++..+ ...+- ++.....+.........|.++.|..+..++++-
T Consensus       162 --~--~v~~~~-~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 --Q--NVTSFD-VTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             --E--SEEEEE-ECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             --C--CcceEE-ecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence              0  000011 12445666666655  4444221 11110 111000000001123467888888777777644

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.03  E-value=0.46  Score=38.43  Aligned_cols=71  Identities=13%  Similarity=0.021  Sum_probs=48.8

Q ss_pred             eEEEEeeCCCcEEEEEeCC-CcEEEEeCCCCceEEE--EecCCceeEEEEcCCCcEEEEEccC------CeEEEEeCCcc
Q 045370           68 TGLLTISGGTTFFVSSSLD-ATCKVWDLGSGILIQT--QVYPQAVTAIAFHPGEQLLFAGSID------GRIFVSPLKFL  138 (350)
Q Consensus        68 ~~~~~~~~~~~~l~s~~~d-~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~  138 (350)
                      ...++.+ ++.+++.|+.+ ..+.+||..+......  ......-.+++..++|+.++.|+.+      ..+.+||..+.
T Consensus        79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3444544 77888887655 5899999998766543  2233344567778899998888753      36889998865


Q ss_pred             c
Q 045370          139 L  139 (350)
Q Consensus       139 ~  139 (350)
                      .
T Consensus       158 ~  158 (387)
T d1k3ia3         158 T  158 (387)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.26  E-value=1.5  Score=37.86  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=34.8

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCCce-eEEEEEccCC-eEEeeecCc
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKGVV-TNLVVIRQSS-LLSEVSNCQ  220 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~-~l~~~~~~~  220 (350)
                      +++|+.||.++.+|.++|+.+.++....+.. .-+.|..+|+ |++..++.+
T Consensus       491 VF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~g  542 (573)
T d1kb0a2         491 VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWG  542 (573)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             EEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            7778899999999999999999986322211 1155777886 555554433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.21  E-value=1.1  Score=36.10  Aligned_cols=111  Identities=8%  Similarity=-0.059  Sum_probs=60.1

Q ss_pred             eecCCCCEEEEEeCC-CcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCCCcEE
Q 045370            2 VFSDDGFLLISGSDD-GMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGGTTFF   80 (350)
Q Consensus         2 ~~s~dg~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l   80 (350)
                      ++.+||.+++.|+.+ ..+.+||..+.                 .+.        ........ ..-.+.+. -.++.++
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~-----------------~w~--------~~~~~~~~-r~~~~~~~-~~dG~v~  134 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSD-----------------SWI--------PGPDMQVA-RGYQSSAT-MSDGRVF  134 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGT-----------------EEE--------ECCCCSSC-CSSCEEEE-CTTSCEE
T ss_pred             EEecCCcEEEeecCCCcceeEecCccC-----------------ccc--------cccccccc-ccccceee-ecCCcee
Confidence            466899998888765 58999998731                 000        00001111 11122333 3367777


Q ss_pred             EEEeCC------CcEEEEeCCCCceEEEEecC---------------CceeEEEEcCCCcEEEEEccCCeEEEEeCCccc
Q 045370           81 VSSSLD------ATCKVWDLGSGILIQTQVYP---------------QAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLL  139 (350)
Q Consensus        81 ~s~~~d------~~v~vwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  139 (350)
                      +.|+.+      ..+.+||..+++....-...               ..-..+..-+++..+..+..++.+.+++.....
T Consensus       135 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         135 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            877643      35899999987654321100               001112233456666666666777777766543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.20  E-value=1  Score=35.97  Aligned_cols=125  Identities=10%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             CceEEEEe--eCCCc-EEEEEeCCCcEEEEeCC---CC----ceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeC
Q 045370           66 SVTGLLTI--SGGTT-FFVSSSLDATCKVWDLG---SG----ILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPL  135 (350)
Q Consensus        66 ~v~~~~~~--~~~~~-~l~s~~~d~~v~vwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  135 (350)
                      .+.++|..  +.++. +++....+|.+..|.+.   .+    ..++.+.....+..|.++.....|+.+-.+.-|+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            46666663  33443 56667788999888763   33    34455777888999999999999999988877777766


Q ss_pred             Cccccccccccccccceeee--ccCCceEEEEecC----Ce--EEEEeCCCcEEEEECCC-ceEEEEec
Q 045370          136 KFLLLEDHFIVGEDQHSVLK--GHNGSITALAFSA----SH--LISASEDKTVCLWDVTR-RVSIRRFN  195 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~----~~--l~s~~~dg~v~iwd~~~-~~~~~~~~  195 (350)
                      .........     .+....  .....+-.|+.-.    +|  ++|.-.+++..|||..+ .+.+..|.
T Consensus       209 ~~~~~~~~~-----~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         209 EPDGGSNGT-----VIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             STTSCSCCE-----EEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ccCCCccce-----eeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            532211111     000111  1245666676432    33  55555678999999876 35665554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.92  E-value=0.78  Score=39.86  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=33.7

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeeec
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~~  218 (350)
                      ++.|+.||.++-+|.++|+.+.++....+ .-.-+.|..+|+ |++...+
T Consensus       487 VF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G  536 (596)
T d1w6sa_         487 VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (596)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEec
Confidence            66799999999999999999999863211 112245777885 5654443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.59  E-value=2  Score=37.07  Aligned_cols=48  Identities=13%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeccCCC-ceeEEEEEccCC-eEEeeec
Q 045370          171 LISASEDKTVCLWDVTRRVSIRRFNHKKG-VVTNLVVIRQSS-LLSEVSN  218 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~-~l~~~~~  218 (350)
                      +++|+.||.++-+|.++|+.+.++.-..+ .-.-+.|..+|+ |++..+.
T Consensus       500 VF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         500 VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            67899999999999999999999873222 112256788885 6654443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.42  E-value=1.4  Score=34.99  Aligned_cols=118  Identities=12%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             CCCcEEEEeCCCCc--eEEE--EecC--CceeEEEEcCCCcEEEEEcc-----------------CCeEEEEeCCccccc
Q 045370           85 LDATCKVWDLGSGI--LIQT--QVYP--QAVTAIAFHPGEQLLFAGSI-----------------DGRIFVSPLKFLLLE  141 (350)
Q Consensus        85 ~d~~v~vwd~~~~~--~~~~--~~~~--~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~  141 (350)
                      ...+|.+|++....  ....  +.++  ...+.+++..++..+++-..                 -+.+..||...    
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~----  197 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----  197 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC----
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc----
Confidence            45678888875432  2222  2222  34788888888888877321                 12333343321    


Q ss_pred             cccccccccceeeeccCCceEEEEecCCe---EEEEeCCCcEEEEECCCce---EEEEeccCCCceeEEEEEcc-CCeEE
Q 045370          142 DHFIVGEDQHSVLKGHNGSITALAFSASH---LISASEDKTVCLWDVTRRV---SIRRFNHKKGVVTNLVVIRQ-SSLLS  214 (350)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~-~~~l~  214 (350)
                               .......-...+.|+++|++   +++-+..+.|+.|++....   ....+. -.+..-.+.+.+. |.+.+
T Consensus       198 ---------~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         198 ---------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             ---------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred             ---------eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEE
Confidence                     11222233568899999987   5666678899999987532   222222 3455677788764 55555


Q ss_pred             ee
Q 045370          215 EV  216 (350)
Q Consensus       215 ~~  216 (350)
                      ++
T Consensus       268 a~  269 (340)
T d1v04a_         268 GC  269 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.32  E-value=2.1  Score=34.09  Aligned_cols=146  Identities=8%  Similarity=0.081  Sum_probs=84.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeEEEEc------CCCcEEEEEcc--C--CeEEEEeCCccccccccc
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFH------PGEQLLFAGSI--D--GRIFVSPLKFLLLEDHFI  145 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~  145 (350)
                      ...+++.....+-|.+||+. |+.+..+. .+.++.|..-      .....+++++.  +  ..|.+|.+......... 
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~-  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS-  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE-
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc-
Confidence            34677777777779999986 77776654 3445555443      22233555552  2  36777776521110000 


Q ss_pred             cccccceeeeccCCceEEEEe--cCC-e---EEEEeCCCcEEEEECC---Cc----eEEEEeccCCCceeEEEEEccCCe
Q 045370          146 VGEDQHSVLKGHNGSITALAF--SAS-H---LISASEDKTVCLWDVT---RR----VSIRRFNHKKGVVTNLVVIRQSSL  212 (350)
Q Consensus       146 ~~~~~~~~~~~~~~~i~~~~~--~~~-~---l~s~~~dg~v~iwd~~---~~----~~~~~~~~~~~~v~~l~~~~~~~~  212 (350)
                      ..... .....-...++.+++  ++. +   +++...+|.+..|.+.   .+    +.++.+. -...+-.|++.+....
T Consensus       116 ~~~~~-~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         116 ITDPN-RPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             CSCSS-SCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             ccccc-cccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            00000 001111123555655  554 3   5666778998888663   22    3455565 3567899999999888


Q ss_pred             EEeeecCccccccc
Q 045370          213 LSEVSNCQRKLKKD  226 (350)
Q Consensus       213 l~~~~~~~~~~~~~  226 (350)
                      |+.+-.+..+|...
T Consensus       194 LyisEE~~Giw~~~  207 (353)
T d1h6la_         194 LYIAEEDEAIWKFS  207 (353)
T ss_dssp             EEEEETTTEEEEEE
T ss_pred             EEEecCccceEEEE
Confidence            88788888877665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=2.6  Score=33.98  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             CceEEEEeeCCCcEEEEEeCCCcEEEEeCC-----------CCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEe
Q 045370           66 SVTGLLTISGGTTFFVSSSLDATCKVWDLG-----------SGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSP  134 (350)
Q Consensus        66 ~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  134 (350)
                      ...-++.++ ...+++.|+.++ +.|....           ......... -..|..++|+.+  .+++. .++.+..++
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            344455544 444667777665 5666532           111111122 235888999744  45554 356677777


Q ss_pred             CCccccccccccccccceeeeccCCceEEEEecCCeEEEEeCCCcEEEEECCCceEEEEec-----cCCCceeEEEEEcc
Q 045370          135 LKFLLLEDHFIVGEDQHSVLKGHNGSITALAFSASHLISASEDKTVCLWDVTRRVSIRRFN-----HKKGVVTNLVVIRQ  209 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~  209 (350)
                      .....          .......-..++..+.++|..++....+|.+.++++..+.......     .-.+.+.+++|++.
T Consensus       112 ~~~l~----------~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k  181 (381)
T d1xipa_         112 LEELS----------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR  181 (381)
T ss_dssp             SSSTT----------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred             eeccc----------cccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence            76421          1122333456789999999997777889999999998875422211     12366899999999


Q ss_pred             CCeEEeeecC
Q 045370          210 SSLLSEVSNC  219 (350)
Q Consensus       210 ~~~l~~~~~~  219 (350)
                      |..++++.++
T Consensus       182 gkq~v~~~g~  191 (381)
T d1xipa_         182 SFQSFAWRNG  191 (381)
T ss_dssp             CEEEEEEETT
T ss_pred             cEEEEEeCCC
Confidence            9888877554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.58  E-value=3.1  Score=34.43  Aligned_cols=26  Identities=12%  Similarity=0.217  Sum_probs=21.5

Q ss_pred             CeecCCCCEEEEEeCCCcEEEEeCcc
Q 045370            1 MVFSDDGFLLISGSDDGMICVWSMTR   26 (350)
Q Consensus         1 i~~s~dg~~l~sg~~dg~i~vwd~~~   26 (350)
                      |+|.|||++|++--.+|.|++++..+
T Consensus        32 la~~pdg~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          32 LLWGPDNQIWLTERATGKILRVNPES   57 (450)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             EEEeCCCeEEEEEecCCEEEEEECCC
Confidence            58999999988876679999998663

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.21  E-value=4.1  Score=33.36  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             eecCCCCEEEEEe-C----CCcEEEEeCccccccccccccccccccccEEEeeccccccceeeeccccCCceEEEEeeCC
Q 045370            2 VFSDDGFLLISGS-D----DGMICVWSMTRLLKQTSELMHHSDQLDQRLIEMELRSLRSLLHYSLEHKSSVTGLLTISGG   76 (350)
Q Consensus         2 ~~s~dg~~l~sg~-~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   76 (350)
                      ++||||+++|.+- .    -..|+++|+.+                           +..+..... ......++|.+.+
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t---------------------------g~~~~~~i~-~~~~~~~~W~~D~  182 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------------AKELPDVLE-RVKFSCMAWTHDG  182 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------------TEEEEEEEE-EECSCCEEECTTS
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCc---------------------------ceecccccc-cccccceEEcCCC
Confidence            5799999887432 2    34789999983                           322221111 1112456776654


Q ss_pred             CcEEEEEeC---------------CCcEEEEeCCCCceE--EEEec---CCceeEEEEcCCCcEEEEE
Q 045370           77 TTFFVSSSL---------------DATCKVWDLGSGILI--QTQVY---PQAVTAIAFHPGEQLLFAG  124 (350)
Q Consensus        77 ~~~l~s~~~---------------d~~v~vwd~~~~~~~--~~~~~---~~~v~~~~~~~~~~~l~~~  124 (350)
                      ..++.+.-.               ...|..|.+.+....  ..+..   ...+..+..++++++++..
T Consensus       183 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence            444444321               125777888775432  22221   2345667788899987654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.12  E-value=1.4  Score=38.11  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCcee--EEEEcCCCc-EEEEE
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVT--AIAFHPGEQ-LLFAG  124 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~--~~~~~~~~~-~l~~~  124 (350)
                      .+.++++|+.||.++-+|..+|+.+..+.....+.  -+.|..+|+ |+++.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            34567789999999999999999999987554432  266777886 44443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.58  E-value=6.6  Score=33.54  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             CCcEEEEeCCCCceEEEEecCC--------------------------------------ce-eEEEEcCCCcEEEEEcc
Q 045370           86 DATCKVWDLGSGILIQTQVYPQ--------------------------------------AV-TAIAFHPGEQLLFAGSI  126 (350)
Q Consensus        86 d~~v~vwd~~~~~~~~~~~~~~--------------------------------------~v-~~~~~~~~~~~l~~~~~  126 (350)
                      +|.|.-+|+.+|+.+..+....                                      .+ ...++++....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6789999999999988754221                                      11 23466676666666554


Q ss_pred             C----------------CeEEEEeCCccccccccccccccceeeeccCC-ceEEEEecCCe---EEEEeCCCcEEEEECC
Q 045370          127 D----------------GRIFVSPLKFLLLEDHFIVGEDQHSVLKGHNG-SITALAFSASH---LISASEDKTVCLWDVT  186 (350)
Q Consensus       127 d----------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~---l~s~~~dg~v~iwd~~  186 (350)
                      +                ..+...|.++++............-.+..... ....+......   ++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence            2                34666666665543322111111111111111 22223333222   6788899999999999


Q ss_pred             CceEEEE
Q 045370          187 RRVSIRR  193 (350)
Q Consensus       187 ~~~~~~~  193 (350)
                      +++++..
T Consensus       335 tG~~i~~  341 (571)
T d2ad6a1         335 NGNLIVA  341 (571)
T ss_dssp             TCCEEEE
T ss_pred             CCcEeee
Confidence            9998754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.90  E-value=5.1  Score=34.24  Aligned_cols=49  Identities=8%  Similarity=0.085  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCceEEEEecCCceeE--EEEcCCCc-EEEEE
Q 045370           76 GTTFFVSSSLDATCKVWDLGSGILIQTQVYPQAVTA--IAFHPGEQ-LLFAG  124 (350)
Q Consensus        76 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~-~l~~~  124 (350)
                      .+.++++|+.||.++.+|..+|+.+..+.....+..  +.|..+|+ |+++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            456777899999999999999999999875544333  55656776 44443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.73  E-value=7.6  Score=33.32  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=19.9

Q ss_pred             EEEEeCCCcEEEEECCCceEEEE
Q 045370          171 LISASEDKTVCLWDVTRRVSIRR  193 (350)
Q Consensus       171 l~s~~~dg~v~iwd~~~~~~~~~  193 (350)
                      ++....+|.++++|..+|+++..
T Consensus       326 v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         326 LTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeccccccceeeecCCCCceeee
Confidence            77788899999999999988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.34  E-value=1.8  Score=37.10  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             CcEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccCCeEEEEeCCccccccc
Q 045370           87 ATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFLLLEDH  143 (350)
Q Consensus        87 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  143 (350)
                      |.|.-||+.+++.+.......+...-.+.-.+.++++|+.||.++.+|..+++....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence            568889999999999877666555433444677888999999999999998876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.97  E-value=6.3  Score=32.14  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             ceEEEEeeCCCcEEE-EEeCCC----cEEEEeCCCCceEEEEecCCceeEEEEcCCCcEEEEEccC--------------
Q 045370           67 VTGLLTISGGTTFFV-SSSLDA----TCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSID--------------  127 (350)
Q Consensus        67 v~~~~~~~~~~~~l~-s~~~d~----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------  127 (350)
                      +....++ +++++++ +-+.+|    .|+++|+.+++.+...-.......++|.+++..|+-...+              
T Consensus       127 ~~~~~~S-pd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEec-CCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            3444554 4666555 434444    6899999999876542212223578999999877644322              


Q ss_pred             --CeEEEEeCCccccccccccccccceeeec--cCCceEEEEecCCe
Q 045370          128 --GRIFVSPLKFLLLEDHFIVGEDQHSVLKG--HNGSITALAFSASH  170 (350)
Q Consensus       128 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~  170 (350)
                        ..|..+.+.+.....        ...+..  ....+..+..++++
T Consensus       206 ~~~~v~~h~lgt~~~~d--------~~v~~e~d~~~~~~~~~~s~d~  244 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSED--------ILCAEFPDEPKWMGGAELSDDG  244 (430)
T ss_dssp             CCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTS
T ss_pred             CcceEEEEECCCCcccc--------ccccccccCCceEEeeeccCCc
Confidence              257777766543221        112222  23346667778887

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.68  E-value=11  Score=30.85  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=39.0

Q ss_pred             ccccCCceEEEEeeCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------cCCceeEEEEcCC
Q 045370           61 LEHKSSVTGLLTISGGTTFFVSSSLDATCKVWDLGSGILIQTQV---------YPQAVTAIAFHPG  117 (350)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~  117 (350)
                      ...-...++++|.+ +++++++--.+|.|++++..++.......         .......|+|+|+
T Consensus        23 a~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          23 LSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            33446778999966 67777665457999999988876554432         1245678999994