Citrus Sinensis ID: 045393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
Protein Sequence
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHccccccccHHHHHHHcccHHHHHHHHHccccccHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHccccHcHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccHHccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccHHEEEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDQELLEVLRHGDEYKIKQLALRQDifstsspggnaVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLpavnqvgpapvleSLFRMtdiegntplhnavTNQHKRVIRILVekdsvpssyinkayqtplSIAIDARLNDIACFiidkspeslnttrlpdelTLIHFVVMRQNYDIMVKILGTNKELIDRLdwhqrnplhyaaaSGNVKMAQRLLEESKRLAykrdcngetplhlaAENGKLKVLKLLINKYpdaieirnnsdRSILHVAAKHGNWNIVSFILRSPEMENLINLvdrngntplhlAAMGLHSDVVFTLSRHKsvniraknhsarsnTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFtaaftipggvksdgpdegtATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPfifyvsapffmivfdqtevnpFALVVRFVRDAL
Flexible Loop (DISEMBL)
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNtplhnavtnqhKRVIRILVekdsvpssyiNKAYQTPLSIAIDARLNDIACFIIDkspeslnttrlpdELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPlhlaaengklKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVniraknhsarsntalEIAEITRANGKEIQKHLTLKALKTAYAKRALSaeelqqkrqvskeegekgkEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Low Complexity Region (SEG)
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIatftftaaftIPGGVKSDGPDEGTATLLHRASFQAFVITDtiamtsamaaaaiifwsfwRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Disordered region (IsUnstruct)
*******VLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILV************AYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI************LEIAEITRANGKEIQKHLTLKALKTAY*****************************TLSVMATLIATFTFTAAFTIPGGVKS****EGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVR***
Disordered Region (DISOPRED)
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSA*******************MAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRD**
Disordered Region (DISEMBL)
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALS********************MAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Disordered Region (DISPRO)
*DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPFALVVRFVRDAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	580	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.789	0.776	0.245	5e-25
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.727	0.805	0.257	4e-24
P57078	832	Receptor-interacting seri	no	no	0.498	0.347	0.305	2e-22
Q9ERK0	786	Receptor-interacting seri	yes	no	0.515	0.380	0.298	6e-22
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.687	0.75	0.242	2e-21
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.501	0.154	0.278	2e-18
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.755	0.371	0.252	2e-17
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.544	0.072	0.265	3e-17
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.544	0.161	0.260	5e-17
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.498	0.155	0.276	3e-16

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 232/496 (46%), Gaps = 38/496 (7%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQ---------VGPAPVLESLFRMTDIEGNTPL 126
           ++T LH+AA+ GD A V +I+K + +  +            A +  S+    +  G T L
Sbjct: 74  NDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETAL 133

Query: 127 HNAVTNQHKRVIRILVEKDSVPS-SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT 185
             A    H  V++ L++  S  S +  N++   PL IA     + I   ++D    +L+ 
Sbjct: 134 FTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDA-TLSQ 192

Query: 186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
           T  P   T +    MR + +++ ++L     L++    + +N LH AA  G+V++ + LL
Sbjct: 193 TFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALL 252

Query: 246 EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
            +  +LA + D  G+T LH+A +    +V+KLL++  P  +   + S  + LHVA +   
Sbjct: 253 SKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKR 312

Query: 306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV--NIRAKNHSA 363
             IV  +L  P+     N + R+  T L +A  GL       LS   S      A++ + 
Sbjct: 313 AEIVELLLSLPDTN--ANTLTRDHKTALDIAE-GL------PLSEESSYIKECLARSGAL 363

Query: 364 RSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMA 423
           R+N   +  +  R+   +I+  + ++  +T    + +        +++ K   E      
Sbjct: 364 RANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVH----NISKELRKLHREGINNAT 419

Query: 424 QTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAA 483
            +++V+A L AT  F A FT+PGG  +D    G+A ++ RASF+ F I + +A+ +++ A
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNND----GSAVVVGRASFKIFFIFNALALFTSL-A 474

Query: 484 AAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNS-------LAIT 536
             ++  +  R +T++    + +     W+A +  ++AF+   Y V+          + + 
Sbjct: 475 VVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVV 534

Query: 537 IAVCVIGCLLPFIFYV 552
             V + G L    +YV
Sbjct: 535 GGVIMAGVLGTMTYYV 550

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 204/478 (42%), Gaps = 56/478 (11%)

Query: 116 RMTDIEGNTPLHNAV-TNQHKRVIRILVEKDSVPSSYI----NKAYQTPLSIAIDARLND 170
           +MT    +TPLH AV   +   ++ ++ E D V    +    N++ +T L +A +    D
Sbjct: 11  QMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTD 70

Query: 171 IACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH 230
           +   ++  S   L  T+  +     H      N  ++  ++  N EL    D  +   LH
Sbjct: 71  MVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALH 130

Query: 231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
            AA+ G+ ++   LL++   LA     NG+T LH AA NG   ++K LI K    +   +
Sbjct: 131 TAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVD 190

Query: 291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
              ++ LH+A K  N  IV  ++ +    +LIN  D  GNTPLH+A     +++V T+ +
Sbjct: 191 KKGQTALHMAVKGQNTEIVDVLMEAD--GSLINSADNKGNTPLHIAVRKNRAEIVQTVLK 248

Query: 351 HKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYA-KRALSAEELQQKR 409
           +  V+  A N S    TAL+IAE T  +  EI   L    ++ A + K A   E     R
Sbjct: 249 YCEVSRVAVNKSGE--TALDIAEKTGLH--EIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query: 410 QVSKEEGEKGKEMAQTL--------------------------------SVMATLIATFT 437
           ++ +   E G E+   L                                +++A LIAT  
Sbjct: 305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVA 364

Query: 438 FTAAFTIPGGVKSDGPDE------GTATLLHRASFQAFVITDTIAMTSAMA--AAAIIFW 489
           F A F +PG    D  D       G A    R  F  FV+ D+ A+  ++A         
Sbjct: 365 FAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVV 424

Query: 490 SFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLS-NSLAITIAVCVIGCLL 546
              R   + +M  +       W+A + +++AFV+  + V+      + + V  IG L+
Sbjct: 425 VIERRAKKQMMAIIN---KLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALI 479

Arabidopsis thaliana (taxid: 3702)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 159/331 (48%), Gaps = 42/331 (12%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE---TALHIAARIGDRA 90
           G+  LHMAV  R + V+  +L ++  +            N  DE   TALH AA+ GD +
Sbjct: 519 GSTPLHMAVERRVRGVVELLLARKISV------------NAKDEDQWTALHFAAQNGDES 566

Query: 91  IVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
               +++   +VN+V             D EG TP+H A  +  + ++RIL+ +  V  S
Sbjct: 567 STRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENIVRILLRR-GVDVS 612

Query: 151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKI 210
              K    PL  A       I   +  +   S+N   L D  T +H    R +Y +  +I
Sbjct: 613 LQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHLAAQRGHYRV-ARI 670

Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKR--DCNGETPLHLAAE 268
           L      ++      + PLH AA +G+   A+ LL    R A K     +G T LHLAA 
Sbjct: 671 LIDLCSDVNVCSLLAQTPLHVAAETGHTSTARLLLH---RGAGKEAMTSDGYTALHLAAR 727

Query: 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRN 328
           NG L  +KLL+ +  D +  R   +++ LH+AA HG+  +V  ++ +    ++I+L D  
Sbjct: 728 NGHLATVKLLVEEKADVL-ARGPLNQTALHLAAAHGHSEVVEELVSA----DVIDLFDEQ 782

Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKS-VNIRA 358
           G + LHLAA G H+  V TL RH + +N+++
Sbjct: 783 GLSALHLAAQGRHAQTVETLLRHGAHINLQS 813

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score =  106 bits (264), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 161/342 (47%), Gaps = 43/342 (12%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE---TALHIAARIGDRA 90
           G+  LHMAV  + + ++  +L ++  +            N  DE   TALH AA+ GD A
Sbjct: 473 GSTPLHMAVERKGRGIVELLLARKTSV------------NAKDEDQWTALHFAAQNGDEA 520

Query: 91  IVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
               +++   +VN+V             D EG TP+H A  +  + ++R L+ +  V   
Sbjct: 521 STRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENIVRTLLRR-GVDVG 566

Query: 151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKI 210
              K    PL  A       I   +  +   S+N   L D  T +H    R +Y +  +I
Sbjct: 567 LQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHLAAQRGHYRV-ARI 624

Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKR--DCNGETPLHLAAE 268
           L      ++      + PLH AA +G+   A+ LL    R A K      G T LHLAA+
Sbjct: 625 LIDLCSDVNICSLQAQTPLHVAAETGHTSTARLLLH---RGAGKEALTSEGYTALHLAAQ 681

Query: 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRN 328
           NG L  +KLLI +  D +  R   +++ LH+AA  G+  +V  ++ +    +LI+L D  
Sbjct: 682 NGHLATVKLLIEEKADVM-ARGPLNQTALHLAAARGHSEVVEELVSA----DLIDLSDEQ 736

Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKS-VNIRA-KNHSARSNTA 368
           G + LHLAA G HS  V TL +H + +N+++ K    +S+ A
Sbjct: 737 GLSALHLAAQGRHSQTVETLLKHGAHINLQSLKFQGGQSSAA 778

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 193/438 (44%), Gaps = 39/438 (8%)

Query: 150 SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVK 209
           S  N A +T + I+    L DI  ++I  S       R   ++   H    R +  I+ +
Sbjct: 53  SVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKE 112

Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269
           +L    EL    D    +PL+ AA   ++++   +L+     A     NG+T LH A   
Sbjct: 113 LLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRY 172

Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG 329
           G L+++K LI K    + +++   ++ LH+A K  +  +V  IL++     ++N  DR G
Sbjct: 173 GLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQAD--YTILNERDRKG 230

Query: 330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSAR-----------SNTALEI----AEI 374
           NT LH+A       +   L    ++ + A N+              S +ALEI     E 
Sbjct: 231 NTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEA 290

Query: 375 TRANGKEIQKHLTLKALKTAYA--KRALSAEELQQKRQ------VSKEEGEKGKEMAQ-- 424
              +G+ I +    +ALK A +  K  + ++ LQ ++       ++KE  +  +E  Q  
Sbjct: 291 GAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNT 350

Query: 425 --TLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMA 482
             +++V+A L A+  F A F +PG   ++G   G A +  R  F+ F + +  ++  ++A
Sbjct: 351 TNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLA 410

Query: 483 AAAI-IFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNS---LAITI- 537
              + I    W ++ +     + +     W A      AF+   +AV+      +AITI 
Sbjct: 411 VVVVQITLVAWDTRAQK--KVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITIT 468

Query: 538 ---AVCVIGCLLPFIFYV 552
              A  ++G L    ++V
Sbjct: 469 LLGAPILVGTLASMCYFV 486

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 32/323 (9%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           LHMA R  + +V + +L+ +         + +  K   D+T LH AARIG   +V  +++
Sbjct: 441 LHMAARAGHTEVAKYLLQNK---------AKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 491

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
                N   P         +    G+TPLH A    H   +  L+EK++  +    K + 
Sbjct: 492 -----NNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF- 537

Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL 217
           TPL +A       +A  ++++        +  + LT +H  V   N DI VK+L      
Sbjct: 538 TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPLHVAVHHNNLDI-VKLLLPRGGS 594

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
                W+   PLH AA    V++A+ LL+     A      G TPLHLAA+ G  +++ L
Sbjct: 595 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVAL 653

Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
           L++K  +   + N S  + LH+ A+ G+  +   +++   M   ++   R G TPLH+A+
Sbjct: 654 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVAS 709

Query: 338 -MGLHSDVVFTLSRHKSVNIRAK 359
             G    V F L     VN + K
Sbjct: 710 HYGNIKLVKFLLQHQADVNAKTK 732

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 214/496 (43%), Gaps = 58/496 (11%)

Query: 31   SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRA 90
            +  G  VLH AV+  N  +++ ++  Q  I           K    ET LH A    +  
Sbjct: 668  TDNGETVLHYAVKSGNLHLVKWLIENQANI---------HAKTDNGETVLHYAVSFNNSD 718

Query: 91   IVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150
            +V  ++ Y   VN              TD  G T LH AV + +  ++ +L+   +  ++
Sbjct: 719  LVYLLIAYGADVNA------------KTD-NGLTALHYAVYDGNLDLVSLLISHGADVNA 765

Query: 151  YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKI 210
              N   +T L  A+D    D+   +I    +     +  +  T++H+ V   N D +V +
Sbjct: 766  KTNSG-ETILYSAVDYGSPDLVYLLIAYGADV--NAKTDNGETVLHYAVESGNLD-LVSL 821

Query: 211  LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG 270
            L  N   ++      +  LH+AA SGN+ +   L++    +  K +  GET LH AAE+G
Sbjct: 822  LIHNGANVNN----AKTILHFAAKSGNLNLVNWLIKNKADIHAKTNS-GETILHFAAESG 876

Query: 271  KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGN 330
             L ++  LI    D I  + NS  +ILH AAK GN N+V++++++      I+    +G 
Sbjct: 877  NLNLVNWLIKNKAD-IHAKTNSGETILHFAAKSGNLNLVNWLIKNKAD---IHAKTNSGE 932

Query: 331  TPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEITRANGKEIQ 383
            T LH AA   + ++V  L ++K+ +I AK        H A  +  L +  +   NG +I 
Sbjct: 933  TILHFAAKSGNLNLVNWLIKNKA-DIHAKTNSGETILHFAAESGNLNLVSLLIHNGTDIN 991

Query: 384  KHLT--LKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAA 441
                  L AL  A     L+   L   + +         E   T+   A  + +    + 
Sbjct: 992  TKTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGE---TILHFAVDLGSLDLVSL 1048

Query: 442  FTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSKTESLMD 501
              + G   +   D+G  T LH A     V +D +A+ S +    +++ +   +K  S   
Sbjct: 1049 LMVRGADVNAKTDDG-LTALHYA-----VESDNLALVSLL----MVYGADVNAKNNSGET 1098

Query: 502  TLPLAIGFTWIALVSM 517
             L  A+ F  + LVS+
Sbjct: 1099 PLHYAVIFNSLDLVSL 1114

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 160/361 (44%), Gaps = 45/361 (12%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G   LHMA R    +V+R ++  QD        + +  K   D+T LHI+AR+G   IV 
Sbjct: 466 GETALHMAARSGQAEVVRYLV--QDG-------AQVEAKAKDDQTPLHISARLGKADIVQ 516

Query: 94  EIMKYLPAVNQV---GPAPVLESL-----------------FRMTDIEGNTPLHNAVTNQ 133
           ++++   + N     G  P+  S                    +T  +G TPLH A    
Sbjct: 517 QLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYG 576

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT 193
              V  +L++K + P +   K+  TPL +A       +A  ++D+        +  +  T
Sbjct: 577 KLEVANLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK--NGYT 633

Query: 194 LIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
            +H    +   DI   +L  G +   + R        +H AA  G+V M   LL  +  +
Sbjct: 634 PLHIAAKKNQMDIATTLLEYGADANAVTRQGIAS---VHLAAQEGHVDMVSLLLGRNANV 690

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
               + +G TPLHLAA+  ++ V ++L+N+    ++ +     + LHV   +GN  IV+F
Sbjct: 691 NLS-NKSGLTPLHLAAQEDRVNVAEVLVNQGAH-VDAQTKMGYTPLHVGCHYGNIKIVNF 748

Query: 312 ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
           +L   +    +N   +NG TPLH AA   H+ ++  L ++   N      +   NTAL I
Sbjct: 749 LL---QHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQN---NASPNELTVNGNTALGI 802

Query: 372 A 372
           A
Sbjct: 803 A 803

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 45/361 (12%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G   LHMA R    +V+R ++  QD        + +  K   D+T LHI+AR+G   IV 
Sbjct: 449 GETALHMAARSGQAEVVRYLV--QDG-------AQVEAKAKDDQTPLHISARLGKADIVQ 499

Query: 94  EIMKYLPAVNQV---GPAPVL-----------------ESLFRMTDIEGNTPLHNAVTNQ 133
           ++++   + N     G  P+                   +   +T  +G TPLH A    
Sbjct: 500 QLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYG 559

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT 193
              V  +L++K + P +   K+  TPL +A       +A  ++D+        +  +  T
Sbjct: 560 KLEVASLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAK--NGYT 616

Query: 194 LIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
            +H    +   DI   +L  G +   + R        +H AA  G+V M   LL  +  +
Sbjct: 617 PLHIAAKKNQMDIATSLLEYGADANAVTRQGIAS---VHLAAQEGHVDMVSLLLSRNANV 673

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
                 +G TPLHLAA+  ++ V ++L+N+    ++ +     + LHV   +GN  IV+F
Sbjct: 674 NLSNK-SGLTPLHLAAQEDRVNVAEVLVNQGAH-VDAQTKMGYTPLHVGCHYGNIKIVNF 731

Query: 312 ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
           +L   +    +N   +NG T LH AA   H+ ++  L ++   N      +   NTAL I
Sbjct: 732 LL---QHSAKVNAKTKNGYTALHQAAQQGHTHIINVLLQN---NASPNELTVNGNTALAI 785

Query: 372 A 372
           A
Sbjct: 786 A 786

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 145/325 (44%), Gaps = 36/325 (11%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           LHMA R  + +V + +L+           +    K   D+T LH AARIG   +V  +++
Sbjct: 437 LHMAARAGHTEVAKYLLQN---------KAKANAKAKDDQTPLHCAARIGHTGMVKLLLE 487

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
                   G +P L +        G+TPLH A    H      L+EK++  +    K + 
Sbjct: 488 N-------GASPNLAT------TAGHTPLHTAAREGHVDTALALLEKEASQACMTKKGF- 533

Query: 158 TPLSIAIDARLNDIACFII--DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK 215
           TPL +A       +A  ++  D  P +       + LT +H  V   N DI VK+L    
Sbjct: 534 TPLHVAAKYGKVRLAELLLEHDAHPNAAGK----NGLTPLHVAVHHNNLDI-VKLLLPRG 588

Query: 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL 275
                  W+   PLH AA    +++A+ LL+     A      G TPLHLAA+ G  +++
Sbjct: 589 GSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHTEMV 647

Query: 276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHL 335
            LL++K  +   + N S  + LH+ ++ G+  +   +++       ++   R G TPLH+
Sbjct: 648 ALLLSKQANG-NLGNKSGLTPLHLVSQEGHVPVADVLIKHGVT---VDATTRMGYTPLHV 703

Query: 336 AA-MGLHSDVVFTLSRHKSVNIRAK 359
           A+  G    V F L     VN + K
Sbjct: 704 ASHYGNIKLVKFLLQHQADVNAKTK 728

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
302143222	617	unnamed protein product [Vitis vinifera]	0.872	0.820	0.381	1e-82
297739103	647	unnamed protein product [Vitis vinifera]	0.844	0.757	0.346	1e-66
225446910	777	PREDICTED: ankyrin repeat-containing pro	0.844	0.630	0.346	3e-66
147820412	624	hypothetical protein VITISV_004974 [Viti	0.834	0.775	0.353	1e-65
359485365	781	PREDICTED: ankyrin repeat-containing pro	0.837	0.622	0.342	1e-65
225446312	677	PREDICTED: ankyrin repeat-containing pro	0.877	0.751	0.350	1e-65
302143268	1343	unnamed protein product [Vitis vinifera]	0.877	0.379	0.350	2e-65
359485593	756	PREDICTED: ankyrin repeat-containing pro	0.839	0.644	0.344	2e-64
297739110	1100	unnamed protein product [Vitis vinifera]	0.906	0.478	0.333	3e-64
224109440	577	predicted protein [Populus trichocarpa]	0.951	0.956	0.322	5e-63

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 210/550 (38%), Positives = 311/550 (56%), Gaps = 44/550 (8%)

Query: 30  SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDR 89
           SS   N  LH+A R  N++++  +L +    +L         +N   ET LHIAAR G  
Sbjct: 41  SSHRKNTALHIAARVGNKKMVEALLSEGTPASLL-------TENSKHETPLHIAARSGHV 93

Query: 90  AIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE-KDSVP 148
            +V  ++ +      V  A  ++ + RM ++EGNTPLH AV N H   + +LVE  DS  
Sbjct: 94  HVVKFLIDWATQSTDV-EAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDL 152

Query: 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKS-PESLNTTRLPDELTLIHFVVMRQNYDIM 207
              +N A ++PL +A+D R ++I   I+  S P SL   R  D  T++H  ++R +   M
Sbjct: 153 LVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSL-LHRSSDGQTILHRAILRADLKTM 211

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
             I+    EL++  D   R+PLHYAAASG + +   LL+         D N  TP H+AA
Sbjct: 212 KIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAHMAA 271

Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
           ENG L VLKL + +    +E+ NN  ++ILHVAA++G+  +V +I     + +L+N  D 
Sbjct: 272 ENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNETDE 331

Query: 328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA-------------EI 374
           +GNTPLHLAA  LHS +V TL +  +++  A N   +  T L+IA             E 
Sbjct: 332 DGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAIN--KKGETVLDIARKFQLVSPSNEGNEG 389

Query: 375 TRANGK---------------EIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE--GE 417
           T  N                 E +K  T++ LK A AK+A   E + ++  +  E    +
Sbjct: 390 TDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAKQAKKLEGILEQEDLIIESIRDK 449

Query: 418 KGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAM 477
           + KEMA TL VMATL+AT TFTAAFT+PGG++S+GP +G A L  +A+F+AF++TDT+AM
Sbjct: 450 RRKEMAGTLIVMATLVATVTFTAAFTLPGGIQSEGPHQGMAVLTRKAAFKAFIVTDTVAM 509

Query: 478 TSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITI 537
           T++M AA I+F S W  + ++  +   +A+   W++L SM LAF+TGL+ VLS+S+ + I
Sbjct: 510 TTSMTAAVILFTSSWNDE-KNKWNLHFIALQLLWMSLASMGLAFLTGLFTVLSHSMELAI 568

Query: 538 AVCVIGCLLP 547
            VC IGCL P
Sbjct: 569 MVCFIGCLFP 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739103|emb|CBI28754.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 284/517 (54%), Gaps = 27/517 (5%)

Query: 25  DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAA 84
           +I    SP  N  LH+A  F +  + + I+++           L++ KN   +TALHIAA
Sbjct: 87  EILCQVSPRKNTCLHIAASFGHHDLAKYIVKECP--------DLIKNKNSKGDTALHIAA 138

Query: 85  RIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQHKR--VI 138
           R  + + V  +M   P+ +  G +  +E    SL  + + EGNT LH A+ N+ K+  V+
Sbjct: 139 RKRNLSFVKIVMDSCPSGS--GASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVV 196

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198
            IL++ D   + Y NK  ++PL +A ++    +   I +   E     R       +H  
Sbjct: 197 EILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVHGA 256

Query: 199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN 258
           +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D +
Sbjct: 257 IMGKNKEMLEKILAM--KLVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSD 314

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
           G  P+H+A+  G + ++K L+    D+IE+ +   ++ILHVAAK+G  N+V+F+L+   +
Sbjct: 315 GFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERL 374

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           EN IN  D+ GNTPLHLA M  H  VV +L+  K V++   N   R  TAL I  +   +
Sbjct: 375 ENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALNIV-LPVKH 431

Query: 379 GKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG---EKGKEMAQTLSVMATLIAT 435
                + L   ALK+A A+ A +++    +R     E    +K K+   TL +++TL+AT
Sbjct: 432 PPTFHQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVAT 491

Query: 436 FTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSK 495
            TF A FT+PGG  S  P+ G A LL R  FQ FVI +T AM +++ AA I+ W+  +  
Sbjct: 492 VTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTTAMYTSILAAIILIWA--QLG 549

Query: 496 TESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSN 531
             +LMDT L  A+ F  +AL +M+L F+ G+Y V+SN
Sbjct: 550 DLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446910|ref|XP_002266647.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 284/517 (54%), Gaps = 27/517 (5%)

Query: 25  DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAA 84
           +I    SP  N  LH+A  F +  + + I+++           L++ KN   +TALHIAA
Sbjct: 217 EILCQVSPRKNTCLHIAASFGHHDLAKYIVKECP--------DLIKNKNSKGDTALHIAA 268

Query: 85  RIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQHKR--VI 138
           R  + + V  +M   P+ +  G +  +E    SL  + + EGNT LH A+ N+ K+  V+
Sbjct: 269 RKRNLSFVKIVMDSCPSGS--GASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVV 326

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198
            IL++ D   + Y NK  ++PL +A ++    +   I +   E     R       +H  
Sbjct: 327 EILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAKPAVHGA 386

Query: 199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN 258
           +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D +
Sbjct: 387 IMGKNKEMLEKILAM--KLVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSD 444

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
           G  P+H+A+  G + ++K L+    D+IE+ +   ++ILHVAAK+G  N+V+F+L+   +
Sbjct: 445 GFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERL 504

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           EN IN  D+ GNTPLHLA M  H  VV +L+  K V++   N   R  TAL I  +   +
Sbjct: 505 ENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALNIV-LPVKH 561

Query: 379 GKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG---EKGKEMAQTLSVMATLIAT 435
                + L   ALK+A A+ A +++    +R     E    +K K+   TL +++TL+AT
Sbjct: 562 PPTFHQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVAT 621

Query: 436 FTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSK 495
            TF A FT+PGG  S  P+ G A LL R  FQ FVI +T AM +++ AA I+ W+  +  
Sbjct: 622 VTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTTAMYTSILAAIILIWA--QLG 679

Query: 496 TESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSN 531
             +LMDT L  A+ F  +AL +M+L F+ G+Y V+SN
Sbjct: 680 DLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 290/540 (53%), Gaps = 56/540 (10%)

Query: 30  SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDR 89
           SS   N  LH+A R  N++++  +L +    +L         +N   ET LHIAAR G  
Sbjct: 41  SSHRKNTALHIAARVGNKKMVEALLSEGTPASLL-------TENSKHETPLHIAARSGHV 93

Query: 90  AIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE-KDSVP 148
            +V  ++ +      V  A  ++ + RM ++EGNTPLH AV N H   + +LVE  DS  
Sbjct: 94  HVVKFLIDWATQSTDV-EAGGIQQVLRMRNMEGNTPLHEAVRNGHHSTVLVLVEANDSDL 152

Query: 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKS-PESLNTTRLPDELTLIHFVVMRQNYDIM 207
              +N A ++PL +A+D R ++I   I+  S P SL   R  D  T++H  ++R +   M
Sbjct: 153 LVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSL-LHRSSDGQTILHRAILRADLKTM 211

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
             I+    EL++  D   R+PLHYAAASG + +   LL+         D N  TP H+AA
Sbjct: 212 KIIIQHMPELVNEKDSCGRSPLHYAAASGALALVDHLLQLKPSNGSFLDNNLATPAHMAA 271

Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
           ENG L VLKL + +    +E+ NN  ++ILHVAA++G+  +V +I     + +L+N  D 
Sbjct: 272 ENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQNGHLKVVRYIQNMFMVNDLLNETDE 331

Query: 328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA-------------EI 374
           +GNTPLHLAA  LHS +V TL +  +++  A N   +  T L+IA             E 
Sbjct: 332 DGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAIN--KKGETVLDIARKFQLVSPSNEGNEG 389

Query: 375 TRANGK---------------EIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE--GE 417
           T  N                 E +K  T++ LK A AK+A   E + ++  +  E    +
Sbjct: 390 TDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAKQAKKLEGILEQEDLIIESIRDK 449

Query: 418 KGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAM 477
           + KEMA       TLI    F      PGG++S+GP +G A L  +A+F+AF++TDT+AM
Sbjct: 450 RRKEMA------GTLIRHSPF------PGGIQSEGPHQGMAVLTRKAAFKAFIVTDTVAM 497

Query: 478 TSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITI 537
           T++M AA I+F S W  + ++  +   +A+   W++L SM LAF+TGL+ VLS+S+ + I
Sbjct: 498 TTSMTAAVILFTSSWNDE-KNKWNLHFIALQLLWMSLASMGLAFLTGLFTVLSHSMELAI 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485365|ref|XP_003633264.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 286/517 (55%), Gaps = 31/517 (5%)

Query: 25  DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAA 84
           +I    SP  N  LH+A  F +  + + I+R+           L++ KN   +TALHIAA
Sbjct: 225 EILCQVSPRKNTCLHIAASFGHHDLAKYIVRECP--------DLIKNKNSKGDTALHIAA 276

Query: 85  RIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQHKR--VI 138
           R  + + V  +M   P+ +  G +  +E    SL  + + EGNT LH A+ N+ K+  V+
Sbjct: 277 RKRNLSFVKIVMDSFPSGS--GASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVV 334

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198
            IL++ D   + Y NK  ++PL +A ++    +   I +   E     R+ +    +H  
Sbjct: 335 EILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEE----RMKNRDRKVHGA 390

Query: 199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN 258
           +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+ D +
Sbjct: 391 IMGKNKEMLEKILAM--KLVHQKDKDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQTDSD 448

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
           G  P+H+A+  G + ++K L+    D+IE+ +    +ILHVAAK+G  N+V+F+L+   +
Sbjct: 449 GFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEERL 508

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           EN IN  D  GNTPLHLA M  H  VV +L+  K V++   N   R  TAL++  ++  +
Sbjct: 509 ENFINEKDNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALDVV-LSVKH 565

Query: 379 GKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG---EKGKEMAQTLSVMATLIAT 435
                + L   ALK+A A+ A +++    +R+    E    +K K+   TL +++TL+AT
Sbjct: 566 PTTFDQALIWTALKSAGARPAGNSKFPPNRRRKQYSESPNTDKYKDRVNTLLLVSTLVAT 625

Query: 436 FTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSK 495
            TF A FT+PGG  S  P+ G A LL R  F  FVI +T AM +++ AA I+ W+  +  
Sbjct: 626 VTFAAGFTMPGGYNSSDPNVGMAALLMRNMFHMFVICNTTAMYTSILAAIILIWA--QLG 683

Query: 496 TESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSN 531
             ++MDT L  A+ F  +AL +M+L F+ G+Y V+SN
Sbjct: 684 DLNVMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446312|ref|XP_002273435.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 290/539 (53%), Gaps = 30/539 (5%)

Query: 18  KQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE 77
           K+L L + I S  SP  N  LH+AV F + ++   I+         L   L++  N   +
Sbjct: 115 KKLQLSE-ILSQVSPQNNTCLHIAVSFGHHELAEYIVG--------LCPDLIKMTNSKGD 165

Query: 78  TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQ 133
           TALHIAAR  D + V   M     ++  G +  +E    SL R+ + EGNT LH A+ N+
Sbjct: 166 TALHIAARKKDLSFVKFGMD--SCLSGSGASRDVEQAEHSLLRIVNKEGNTVLHEALINR 223

Query: 134 HKR--VIRILVEKDSVPSSYINKAYQTPLSIAIDAR-LNDIACFIIDKSPESLNTTRLPD 190
            K+  V+ IL++ D   +   NK  ++PL +A +A   + +      K  E +N  R  +
Sbjct: 224 CKQEEVVEILIKADPQVAYDPNKEGKSPLYLAAEAHYFHVVEAIGKSKVEEHMNINRDRE 283

Query: 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
               +H  ++ ++ +++ KIL    +L+ + D   R PLHYAA+ G ++  Q LL++S  
Sbjct: 284 AKPAVHGAILGKSKEMLEKILAL--KLVHQKDEQGRTPLHYAASIGYLEGVQMLLDQSNF 341

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310
             Y+RD  G  P+H+A+  G + ++K L+    D+IE+ +    +ILHVAAK+G  N+V 
Sbjct: 342 DRYQRDDEGFLPIHIASMRGYVDIVKELLQISSDSIELLSKHGENILHVAAKYGKDNVVD 401

Query: 311 FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALE 370
           F+L+   +ENLIN  D+ GNTPLHLA    H  VV  L+  K V++   N+  +  TA +
Sbjct: 402 FVLKKKGVENLINEKDKGGNTPLHLATRHAHPKVVNYLTWDKRVDVNLVNNEGQ--TAFD 459

Query: 371 IAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMA 430
           IA ++  +     + L   ALK+ Y  R     ++  K   S    E  K+   TL +++
Sbjct: 460 IA-VSVEHPTSFHQRLVWTALKS-YGARPAGNSKVPPKPSKSPNTDEY-KDRVNTLLLVS 516

Query: 431 TLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWS 490
           TL+AT TF A FTIPGG  S  P  G A  L R  F  FVI +TIAM +A+ AA I+ W+
Sbjct: 517 TLVATVTFAAGFTIPGGYNSSDPGAGLAIFLMRNMFHMFVICNTIAMYTAILAAIILIWA 576

Query: 491 FWRSKTESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIG--CLL 546
             +    +LMDT    A+ F  +AL +M+L F+ G+  V+SN   + I V +IG  CL+
Sbjct: 577 --QLGDLNLMDTAFTWALPFLGLALYAMSLGFMAGVSLVISNLHWLAIVVFIIGTICLV 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143268|emb|CBI21829.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 290/539 (53%), Gaps = 30/539 (5%)

Query: 18   KQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE 77
            K+L L  +I S  SP  N  LH+AV F + ++   I+         L   L++  N   +
Sbjct: 781  KKLQL-SEILSQVSPQNNTCLHIAVSFGHHELAEYIVG--------LCPDLIKMTNSKGD 831

Query: 78   TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQ 133
            TALHIAAR  D + V   M     ++  G +  +E    SL R+ + EGNT LH A+ N+
Sbjct: 832  TALHIAARKKDLSFVKFGMD--SCLSGSGASRDVEQAEHSLLRIVNKEGNTVLHEALINR 889

Query: 134  HKR--VIRILVEKDSVPSSYINKAYQTPLSIAIDAR-LNDIACFIIDKSPESLNTTRLPD 190
             K+  V+ IL++ D   +   NK  ++PL +A +A   + +      K  E +N  R  +
Sbjct: 890  CKQEEVVEILIKADPQVAYDPNKEGKSPLYLAAEAHYFHVVEAIGKSKVEEHMNINRDRE 949

Query: 191  ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
                +H  ++ ++ +++ KIL    +L+ + D   R PLHYAA+ G ++  Q LL++S  
Sbjct: 950  AKPAVHGAILGKSKEMLEKILAL--KLVHQKDEQGRTPLHYAASIGYLEGVQMLLDQSNF 1007

Query: 251  LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310
              Y+RD  G  P+H+A+  G + ++K L+    D+IE+ +    +ILHVAAK+G  N+V 
Sbjct: 1008 DRYQRDDEGFLPIHIASMRGYVDIVKELLQISSDSIELLSKHGENILHVAAKYGKDNVVD 1067

Query: 311  FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALE 370
            F+L+   +ENLIN  D+ GNTPLHLA    H  VV  L+  K V++   N+  +  TA +
Sbjct: 1068 FVLKKKGVENLINEKDKGGNTPLHLATRHAHPKVVNYLTWDKRVDVNLVNNEGQ--TAFD 1125

Query: 371  IAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMA 430
            IA ++  +     + L   ALK+ Y  R     ++  K   S    E  K+   TL +++
Sbjct: 1126 IA-VSVEHPTSFHQRLVWTALKS-YGARPAGNSKVPPKPSKSPNTDEY-KDRVNTLLLVS 1182

Query: 431  TLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWS 490
            TL+AT TF A FTIPGG  S  P  G A  L R  F  FVI +TIAM +A+ AA I+ W+
Sbjct: 1183 TLVATVTFAAGFTIPGGYNSSDPGAGLAIFLMRNMFHMFVICNTIAMYTAILAAIILIWA 1242

Query: 491  FWRSKTESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIG--CLL 546
              +    +LMDT    A+ F  +AL +M+L F+ G+  V+SN   + I V +IG  CL+
Sbjct: 1243 --QLGDLNLMDTAFTWALPFLGLALYAMSLGFMAGVSLVISNLHWLAIVVFIIGTICLV 1299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485593|ref|XP_002266894.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 283/517 (54%), Gaps = 30/517 (5%)

Query: 25  DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAA 84
           +I    SP  N  LH+A  F +  + + I+R+           L++ KN   +TALHIAA
Sbjct: 199 EILCQVSPRKNTCLHIAASFGHHDLAKYIVRECP--------DLIKNKNSKGDTALHIAA 250

Query: 85  RIGDRAIVSEIMKYLPAVNQVGPAPVLE----SLFRMTDIEGNTPLHNAVTNQHKR--VI 138
           R  + + V  +M   P+ +  G +  +E    SL  + + EGNT LH A+ N+ K+  V+
Sbjct: 251 RKRNLSFVKIVMDSFPSGS--GASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVV 308

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198
            IL++ D   + Y NK  ++PL +A ++    +   I +   E     R   +   +H  
Sbjct: 309 EILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNR---DRKAVHGA 365

Query: 199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN 258
           +M +N +++ KIL    +L+ + D   R PLH AA+ G ++  Q LL++S    Y+   +
Sbjct: 366 IMGKNKEMLEKILAM--KLVQQKDKDGRTPLHCAASIGYLEGVQILLDQSNLDPYQTASD 423

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
           G  P+H+A+  G + ++K L+    D+IE+ +    +ILHVAAK+G  N+V+F+L+   +
Sbjct: 424 GFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEERL 483

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           EN IN  D  GNTPLHLA M  H  VV +L+  K V++   N   R  TAL+ A ++  +
Sbjct: 484 ENFINEKDNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVND--RGQTALD-AVLSVKH 540

Query: 379 GKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG---EKGKEMAQTLSVMATLIAT 435
                + L   ALK+A A+ A +++    +R     E    +K K+   TL +++TL+AT
Sbjct: 541 PTTFDQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVAT 600

Query: 436 FTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSK 495
            TF A FT+PGG  S  P+ G A LL R  F  FVI +T AM +++ AA I+ W+  +  
Sbjct: 601 VTFAAGFTMPGGYNSSDPNVGMAALLMRNMFHMFVICNTTAMYTSILAAIILIWA--QLG 658

Query: 496 TESLMDT-LPLAIGFTWIALVSMTLAFVTGLYAVLSN 531
             +LMDT L  A+ F  +AL +M+L F+ G+Y V+SN
Sbjct: 659 DLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739110|emb|CBI28761.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 190/570 (33%), Positives = 302/570 (52%), Gaps = 44/570 (7%)

Query: 25   DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAA 84
            +I S  SP  N  LH+AVRF + +    I+++           L+++ N   +TALHIAA
Sbjct: 542  EILSQVSPRNNTCLHIAVRFGHHEHAEYIVKECP--------DLIKKTNSTGDTALHIAA 593

Query: 85   RIGDRAIVSEIMKYLPAVNQVGPAPVLES----LFRMTDIEGNTPLHNAVTNQHKR--VI 138
            R  D + V   M   P+ +  G +  +E     L  + + EGNT LH A+ N+ K+  V+
Sbjct: 594  RKKDLSFVKFAMDSCPSGS--GASRDVEKAEHPLLIIVNKEGNTVLHEALINRCKQEEVV 651

Query: 139  RILVEKDSVPSSYINKAYQTPLSIAIDAR-LNDIACFIIDKSPESLNTTRLPDELTLIHF 197
             IL++ D   + Y NK  ++ L +A +A   + +      K  +  N  R  +  + +H 
Sbjct: 652  EILIKADPQVAYYPNKEGKSLLFLAAEAHYFHVVEAIGKPKVEKHKNINRDREAKSAVHG 711

Query: 198  VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL--EESKRLAYKR 255
             ++ +N +++ KIL    +++ + D H R PLHYAA+ G ++  Q LL  ++S    Y R
Sbjct: 712  AILGKNKEMLEKILAL--KIVHQRDEHGRTPLHYAASIGYLEGVQTLLAKDQSNFDRYHR 769

Query: 256  DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
            D  G  P+H+A+  G + ++K L+    D+IE+ +    +ILHVAAK+G  N+V F+L+ 
Sbjct: 770  DDEGFLPIHVASMRGYVDIVKELLQVSSDSIELLSKHGENILHVAAKYGKDNVVDFLLKK 829

Query: 316  PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEIT 375
               ENLIN  D+ GNTPLHLA    H  VV  L+  K V++   N+  +  TA +IA ++
Sbjct: 830  KGHENLINEKDKEGNTPLHLATTYAHPKVVNYLTWDKRVDVNLVNNEGQ--TAFDIA-VS 886

Query: 376  RANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIAT 435
              +   + + L   ALK+  A+RA ++ ++  K   S    E  K+   TL +++TL+AT
Sbjct: 887  VEHPTSLHQRLIWTALKSTGARRAGNS-KVPPKPSKSPNTDEY-KDRVNTLLLVSTLVAT 944

Query: 436  FTFTAAFTIPGGVKSDGPDEGTATLLHRASFQAFVITDTIAMTSAMAAAAIIFWSFWRSK 495
             TF A FT+PGG  S  P+ G A  L R  FQ FVI +TIAM +++ AA I+ W+  +  
Sbjct: 945  VTFAAGFTVPGGYNSSDPNAGVAIFLMRNMFQMFVICNTIAMYTSILAAIILIWA--QLG 1002

Query: 496  TESLMD-TLPLAIGFTWIALVSMTLAFVTGLYAVLSNSLAITIAVCVIG--CLLPFIFYV 552
              +LMD     A+    +AL +M+  F+ G+  V+SN   + I V +IG  CL+     +
Sbjct: 1003 DLNLMDPAFRFALPLLGLALYAMSFGFMAGVSLVVSNLHWLAIVVFIIGIICLVS----L 1058

Query: 553  SAPFFMIVFDQTEVN---------PFALVV 573
            S PF ++       N         PF L+V
Sbjct: 1059 SVPFLLLFLPSKSTNRILRYISYYPFLLLV 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 187/580 (32%), Positives = 296/580 (51%), Gaps = 28/580 (4%)

Query: 1   MDQELLEVLRHGDEYKIKQLALRQD--IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQD 58
           MD  L  V + G+ Y + QL L ++  + +  +P GN  LH+AV+F ++ V+ EI  +  
Sbjct: 1   MDSRLYRVAKSGNVYILLQL-LNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCG 59

Query: 59  FIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF--- 115
                   SLL + N   ++ LH+AAR G  +IV  ++K + A  ++         F   
Sbjct: 60  --------SLLTRPNSSGDSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFDIL 111

Query: 116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFI 175
           R  + E NT LH AV N +  V+++L+  D+  + + N A ++PL +A      ++   I
Sbjct: 112 RQGNNENNTVLHEAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNLLNQI 171

Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
           +  +P S +     +  T +H  V+ ++ DIM  +L     LI   D H R  LH+AA+ 
Sbjct: 172 LISTPASAHGG--SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASL 229

Query: 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
           G+ +  +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ + + RS
Sbjct: 230 GDRRAVERLLEFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRS 289

Query: 296 ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355
           +LH A   G  N+V  ++   E++ LIN  D  GNTPLHLAA+   + ++  L   + V+
Sbjct: 290 VLHFAVLSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDERVD 349

Query: 356 IRAKNHSARS-----NTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQ 410
            RA+N + +S      +  E   I R N  E      +        K+     + +   +
Sbjct: 350 HRARNETGQSVFDIDGSIRESCFIYRCNIIECVWRKLIPVSNGIIGKKNPPCTDQEAIAR 409

Query: 411 VSKEEGEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSD-GPDEGTATLLHRASFQAF 469
           +     +  K M  TL ++ATLIAT TF AAFT+PGG  +D G  +G A L      + F
Sbjct: 410 I-----QTYKRMGNTLLMVATLIATVTFAAAFTLPGGFNNDLGLKQGVALLESSKHLRWF 464

Query: 470 VITDTIAMTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVL 529
           V +D IAMTS++ AA IIFW    S  ES +  L  A   T IAL S  +AF++G+ AVL
Sbjct: 465 VFSDAIAMTSSIIAACIIFWGA-VSNDESYVYYLASATVLTCIALQSAGIAFLSGIVAVL 523

Query: 530 SNSLAITIAVCVIGCLLPFIFYVSAPFFMIVFDQTEVNPF 569
            +   +     ++G     I ++     + VF  +E+  F
Sbjct: 524 PDQPFVDSVTYIVGIAFHVINFLFLLQLLRVFLVSEICQF 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.920	0.788	0.283	9.2e-52
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.925	0.871	0.272	6.2e-46
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.941	0.851	0.251	5.1e-38
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.932	0.792	0.253	7.2e-37
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.794	0.805	0.267	1.2e-35
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.951	0.795	0.253	1.3e-32
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.689	0.698	0.259	2.7e-28
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.937	0.811	0.235	4.2e-27
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.779	0.766	0.239	1.3e-21
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.772	0.738	0.224	1.8e-21

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 158/558 (28%), Positives = 266/558 (47%)

Query:     1 MDQELLEVLRHGDEYKIKQLALRQDI-FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF 59
             M  + +  +R GDE  ++ +    +I  S+ +  GN +LH+A    +  ++  IL     
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNA--- 153

Query:    60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119
                  +  LL + N M E ALH+AA  G  A+V  ++ ++  ++   P  V + ++   D
Sbjct:   154 -----YPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPG-VAKKIYFAKD 207

Query:   120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS 179
                +  LH ++  +H +V   LV  +   S   N    +PL +A++A   D+A  +   S
Sbjct:   208 RHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHS 267

Query:   180 PE-SLNTTRLPDEL---TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
                S +T+ L  ++   +++H  +  +  DI+V IL  +  LI+  D   R  L + A+ 
Sbjct:   268 NNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLINFRD-EGRTCLSFGASL 326

Query:   236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
             G  +    LL+++    Y  D +G  P+H+A + G +K+LK ++ + PDA+E+ +  +++
Sbjct:   327 GYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQN 386

Query:   296 ILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
             +LHVAAK+G   ++ FILR       E LIN  D NGNTPLHLA    H  VV  L+   
Sbjct:   387 VLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDN 446

Query:   353 SVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVS 412
              V+++  NH     TAL+IAE    +     + LT  AL +A A R    + +       
Sbjct:   447 RVDLKTLNHDGV--TALDIAEKNMDSSYTFFERLTWMALISAGAPRG--PKLILSTPVTQ 502

Query:   413 KEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFVIT 472
               +G K K+   TL ++ATL+          +PGG     P+ G ATL  + +FQ F++ 
Sbjct:   503 NSDGGKYKDRVNTLLLVATLVATMTFTAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVF 562

Query:   473 DXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNS 532
             D                         +M    LA+    +AL SM++AF+ G YA +   
Sbjct:   563 DTLAMYCSIITIVALIWAQL-GDLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVYGL 621

Query:   533 LAITIAVC-VIGCLLPFI 549
             L + +     +  LL F+
Sbjct:   622 LIVGVLTSSYLDFLLLFV 639

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 154/565 (27%), Positives = 263/565 (46%)

Query:     1 MDQELLEVLRHGDEYKIKQLALRQDIFSTS---SPGGNAVLHMAVRFRNQQVIREILRQQ 57
             M+  +L  +R GD+  + +  +  D+  T       GN++LH+A    +  ++       
Sbjct:    37 MNPAILCAVRAGDKVSLLK-RINDDVKVTQRLVDNQGNSILHIAAALGHVHIV------- 88

Query:    58 DFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM 117
             +FI +    +LL+  NLM ET LH+AAR G   IV  +++++   +        ++    
Sbjct:    89 EFI-ISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSY------DAFIAA 141

Query:   118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
                 G+T LH A+  +H  V   LV      S   N    +PL +A++A  +++   +++
Sbjct:   142 KSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLE 201

Query:   178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
              S        +    ++IH  +     DI+  +L  +  LI+  +   R  L Y A+ G 
Sbjct:   202 SSSSPSILASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGC 261

Query:   238 VKMAQRLLEE----SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD 293
              +  + +L E    +  L Y  D +G TP+H+AA+ G ++++K  +   PD+ E+ NN  
Sbjct:   262 YEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQC 321

Query:   294 RSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
             ++I HVAA  G   +V ++L+  E + ++N  D NGNTPLHLA    +  VV  L+ +  
Sbjct:   322 QNIFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDG 381

Query:   354 VNIRAKNHSARSNTALEIAEITRANGKEI-QKHLTLKALKTAYAKRALSAEELQQKRQVS 412
             +N+RA N+     TAL+IAE  + N   +  K L   AL +A A    +   L    Q S
Sbjct:   382 INLRALNNEGF--TALDIAETMKDNNAYVLYKRLIWMALVSAGAPHGPNLIPLTVS-QSS 438

Query:   413 KEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFVIT 472
             K+  E+ K+   TL V ATL+          +PGG  S  P  G A L+++ +F+ F++ 
Sbjct:   439 KQSPERYKDSVNTLMVTATLVATVTFAAGLTLPGGYMSSAPHLGMAALVNKLNFKVFLLL 498

Query:   473 DXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSNS 532
             +                        +      LA+     A+VSM +A V GL  V+S+ 
Sbjct:   499 NNIAMCTSVVTVMALIWAQLGDALLT-KKAFRLALPLLLTAVVSMMMASVAGLTLVVSDL 557

Query:   533 LAITIAVCVI-GCLLPFIFYVSAPF 556
               ++  V  I    L F+  +  P+
Sbjct:   558 PWLSHLVLAIDSAFLVFLMLLIIPY 582

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 5.1e-38, P = 5.1e-38
 Identities = 147/584 (25%), Positives = 257/584 (44%)

Query:     1 MDQELLEVLRHGDEYKIKQLALRQD--IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQD 58
             M+ E+   +R G+   + ++    +  +    +  G+  LH+A  +   ++++ I+ +  
Sbjct:    36 MNPEIFSAMRAGNVKFLDKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVSECP 95

Query:    59 FIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE-----S 113
                      LL + N  D+  LH AA  G  A+V     ++  VN++      E     +
Sbjct:    96 --------CLLLETNSKDQIPLHAAAAAGRLAVVEA---FVARVNEISDGLSEEERERVN 144

Query:   114 LFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIAC 173
             L+ M DI+GNT LH A+   H +    LV+ + + S   N    +PL  AI A    +  
Sbjct:   145 LYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVE 204

Query:   174 FIIDKSPESLN-TTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
              ++    ++ N  ++L    +L+H  +  +N DI+  IL  +  L++  D   R  L  A
Sbjct:   205 AMMYVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSEDPSLVNERDEEGRTCLSVA 264

Query:   233 AASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
             A  G  K    LL  S    ++ D +G  P+H+A E G++K+   L+   PD+  + N  
Sbjct:   265 AYVGYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNKQ 324

Query:   293 DRSILHVAAKHGNWNIVSF-ILRSPEM--ENLINLVDRNGNTPLHLAAMGLHSDVV---- 345
              ++ILH+AAK G        ++++ ++   +LI   D +GNTPLHLA +      V    
Sbjct:   325 GQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLHLATLTWRPRTVNILN 384

Query:   346 -FTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA---LS 401
              FTL  H  ++IR K+      +AL+IAE    +    ++ +TL  L    + R    + 
Sbjct:   385 KFTLGNH--LHIRNKD----GLSALDIAESNLQSNYVFRERMTLMVLLCTCSPRGFKMIP 438

Query:   402 AEELQQKRQVSKEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLL 461
                +  K +  K  G K K+    L ++ATL+          IPGG  S  P  G A +L
Sbjct:   439 TSGITLKSRSEKVAGNKYKDSINVLLLVATLVATVAFAAGIAIPGGFSSSTPKRGIA-IL 497

Query:   462 HRASFQAFVITDXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAF 521
                 F +  +                           +  T  LA+   +++LVSM+ AF
Sbjct:   498 DDDDFLSIFLVFNTLAMQSSVLAIVALIWAQLGDPVLVHKTFHLALPALFVSLVSMSSAF 557

Query:   522 VTGLYAVLSNSLAITIAVCVIGCLLPFIF-YVSAPFFMIVFDQT 564
               G+ A   ++  +  ++  I  +  F+  Y+ AP+ +  F  T
Sbjct:   558 FCGVVATTKHNPWLFDSIIFISIIFLFVVAYLLAPYAIPQFPGT 601

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 7.2e-37, P = 7.2e-37
 Identities = 143/565 (25%), Positives = 249/565 (44%)

Query:     1 MDQELLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF 59
             M+ E+L  L  G+E  +++L      +    +  G++VLH+A  + + ++++ I+ +   
Sbjct:    87 MNAEMLSTL--GNEEWLEKLRSHGTPLTCLKNDRGDSVLHLAATWSHLELVKNIVSECS- 143

Query:    60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL--FRM 117
                     LL + N  D+  LH+AAR+G  A+V +++  +   +        E L  + +
Sbjct:   144 -------CLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLL 196

Query:   118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDAR-LNDIACFII 176
              DI G+T L+ A+   +  V   LV  +   S    K   +PL +A++A+  + +   + 
Sbjct:   197 KDINGDTALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASLVKAMLG 256

Query:   177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
             +  P+  N   L     L H  +   + DI+  IL     L+D  D   R  L + A+ G
Sbjct:   257 NDGPQRKNLN-LEGRKYLAHAALNSLSTDILDVILNEYPSLVDERDEEGRTCLSFGASIG 315

Query:   237 NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI 296
               K    LL  S++  +  D +G  P+HLA E G++KV+K +  + P +  + N   +++
Sbjct:   316 YHKGVCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNL 375

Query:   297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
             LH+AA+ G + I+  +    ++ +L N  D +GNTPLHLA +      V  L   K++ I
Sbjct:   376 LHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPLHLATIYWRPRAVRELGGKKNLLI 435

Query:   357 RAKNHSARSNTALEIAEITRANGKEIQKHLTLKAL-KTAYAKRALSAEELQQKRQVSKEE 415
             +  N       AL+IAE         ++ LTL AL +  +      A  + Q R +  + 
Sbjct:   436 QNNN----GLVALDIAESKLQPHYIFRERLTLLALVQLHFQNDPRCAHTMIQTRPIMPQG 491

Query:   416 GEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFVITDXX 475
             G K  +    L V+A LI          IPGG K   P+ G A L+       F+I D  
Sbjct:   492 GNK--DYINALLVVAALITTVTFTSGFTIPGGFKDSTPNVGMANLITNPRLILFLIFDIL 549

Query:   476 XXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLSN-SLA 534
                                 T     ++ +A+   + A+  MTLAF   +     N    
Sbjct:   550 ALETSFLAVVSLILAQLGDPT-LYQSSVRVAMISLYFAMYFMTLAFFFVMVIAAGNVRWL 608

Query:   535 ITIAVCVIGCLLPFIFYVSAPFFMI 559
             + +  C+I  +L   F    P  ++
Sbjct:   609 VYVIFCLIFSILTLAFSRFMPHLLL 633

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 129/483 (26%), Positives = 225/483 (46%)

Query:     1 MDQELLEVLRHGDEYKIKQL-ALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF 59
             M+ E+   L  GD+  ++ L  +   +    S  G++VLH+A R+ + ++++ I+ +   
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPC 140

Query:    60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL--FRM 117
             + L L        N  D+  LH+AA  G  AIV  ++  +   +        E L  + +
Sbjct:   141 LVLEL--------NFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVL 192

Query:   118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDAR----LNDIAC 173
              D  GNT LH A+  ++  +   LV ++   S   N    + L +A++A     + +I  
Sbjct:   193 RDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILK 252

Query:   174 FIIDKSPESLNT---TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH 230
                +   E  N+   ++L     L+H  +  ++  ++  IL     L D  D   R  L 
Sbjct:   253 TAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGRTCLS 312

Query:   231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
             +AA+ G  K    LL+ S +  Y  D +G  P+H AAENG ++++K ++ + P +  + N
Sbjct:   313 FAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHMLN 372

Query:   291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
                +++LH+AAK G  N+V  ++RS + ++L    D +GNTPLHLA +      + TL+ 
Sbjct:   373 KLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHLAVLNWRYRSIRTLAS 432

Query:   351 HKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQ 410
                + ++ +N +    TA  IAE          + LTL  L  A+A R   + +   K  
Sbjct:   433 DVKI-LQLRNDNGL--TARGIAESVLKPNYIFHERLTLAFLLDAHAFRGCGSVKSLTKPS 489

Query:   411 VSKEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFV 470
                +  EK ++   TL ++A L+          IPGG  S  P  G ATL    +   F+
Sbjct:   490 EPLDH-EKSRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLTTDPNLFFFL 548

Query:   471 ITD 473
             + D
Sbjct:   549 LFD 551

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 147/581 (25%), Positives = 255/581 (43%)

Query:     1 MDQELLEVLRHGDEYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF 59
             M  E+   +  G++  +++L  R   +    S  G+++LH+AV + + ++++EI+ +   
Sbjct:    98 MIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCE--- 154

Query:    60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLP--AVNQVGPAPVLESLFRM 117
                RL   LL Q N   +T LH+AA  G   IV   +  +   +           + + +
Sbjct:   155 -CPRL---LLEQ-NSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVL 209

Query:   118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI---DARLNDIACF 174
              D +GNT L+ A+  ++  +   LV  +       NK   + L +AI   D  L      
Sbjct:   210 KDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILK 269

Query:   175 IID----KSPESLNTTRLPDELTLIHFVVMRQNY-DIMVKILGTNKELIDRLDWHQRNPL 229
             II     K  +S   ++L  + +L H  ++ Q+   ++  IL     L+D  D +    L
Sbjct:   270 IIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDINGWTCL 329

Query:   230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
               AA  G  +    LLE S +  Y  D +G  P+H AAE G   +++  I + P +  + 
Sbjct:   330 SLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLL 389

Query:   290 NNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
             N   +++LH+AAK+G + I + ++ + + E+L    D +GNTPLHLA M  H   +  L+
Sbjct:   390 NKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLA 449

Query:   350 RH-KSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQK 408
             R  K + +R KN   R   A +IAE         Q+  TL  L  A   R   +     K
Sbjct:   450 RSSKILKVRNKN-GLR---ARDIAEREVKPHYIFQERWTLALLLYAIHSRGFESVHSLTK 505

Query:   409 RQVSKEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQA 468
               V  +  +  ++   TL ++A L+          IPGG  S  P  G ATL    +   
Sbjct:   506 PSVPLDP-KNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFI 564

Query:   469 FVITDXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAV 528
             F++ D                         +  +L +A+     AL+ M LAF+ G+   
Sbjct:   565 FLVLDILAMQSSVATIGILIWAQLGDPV-LIRSSLHVALPLLLFALLCMPLAFLFGVVTA 623

Query:   529 LSNSLAITIAVCVIGCLL-PFIFYVSAPFFMIVFDQTEVNP 568
             + +   + + +C+I  L   +  +V  P  M+   ++ V+P
Sbjct:   624 VGHVKWLVVIICIISVLFFSWAIFVLGPHVML--QRSYVSP 662

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 2.7e-28, P = 2.7e-28
 Identities = 114/440 (25%), Positives = 200/440 (45%)

Query:   113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
             SL  +T+++G+TPLH A    H  ++  ++       + +N   +T   +A      D+A
Sbjct:    79 SLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNPDVA 138

Query:   173 CFIIDKSPESLNTTRLPDELTLIHFV---VMRQNYDIMVKILGTNKELIDRLDWHQRNPL 229
               I++++            +T+  F    V+ +  DI  ++L    +L    D     PL
Sbjct:   139 SLILEET----------SSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPL 188

Query:   230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
             H+A  + N+++ + LLE  + LA + + +G TPLHLAA    + +LK   +K P   +I 
Sbjct:   189 HHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDIL 248

Query:   290 NNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
               +  ++ H+AA+H N     F+  SP+  NL++ VDR GNT LH A M     V+ +++
Sbjct:   249 TPAKETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSIT 308

Query:   350 RHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQ-- 407
                ++++ AKN+  R   A+++  +   +  +I + L   A +     R+LS    QQ  
Sbjct:   309 YETTIDLSAKNN--RGLKAVDLINVDDEDYSKISRWLRFDAKQI----RSLSDPNHQQGN 362

Query:   408 ----------KRQV----SKEEGEKGKEMA----QTLSVMATLIXXXXXXXXXXIPGGVK 449
                       K Q+    SK E +   E       T++++A LI           PGGV 
Sbjct:   363 KNMGVLSEYKKMQIFETPSKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVY 422

Query:   450 SDGPDEGTATLLHRASFQAFVITDXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGF 509
              +GP +G +T     +FQ F I++                     +T  L + L L    
Sbjct:   423 QEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPY-RTRPLKNFLKLTHRI 481

Query:   510 TWIALVSMTLAFVTGLYAVL 529
              W+A+ SM LA+V+    ++
Sbjct:   482 LWVAVASMALAYVSAASIII 501

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 136/578 (23%), Positives = 247/578 (42%)

Query:     1 MDQELLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF 59
             M  E+   + +G++  +++L      +    S  G+++LH+A ++ + ++++EI+ +   
Sbjct:    67 MTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHIAAKWGHLELVKEIIFECP- 125

Query:    60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL--FRM 117
                     LL ++N   +T LH+A   G   +V  ++  + +          E L    +
Sbjct:   126 -------CLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLNPHVL 178

Query:   118 TDIEGNTPLHNAVTNQHKRVIRILVEKDS-VPSSYINKAYQTPLSIAIDA--RLNDIACF 174
              D +GNT L+ A+  ++  +   LV  D   P    NK   + L  A+DA  +  D+   
Sbjct:   179 KDEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISS-LYEAVDAGNKFEDLVKA 237

Query:   175 I-------IDKSPESLNT-TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQR 226
             I       +D+     N  ++L     L H  +  ++  ++  IL     L+D  D   R
Sbjct:   238 ILKTTDDNVDREVRKFNLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQDEDGR 297

Query:   227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
               L Y A+ G  K    +L  S +  Y  D +G  P+H AA+N   +++K  I + P + 
Sbjct:   298 TCLSYGASIGYYKGLCNILNRSTKGVYVCDQDGSFPIHSAAKNEHYEIIKEFIKRCPASK 357

Query:   287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
              + N   ++ILHVAAK+        ++   + ++L    D +GNTPLHLA M    D + 
Sbjct:   358 YLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLAVMNWDFDSIT 417

Query:   347 TLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQ 406
              L+      ++ +N S     A +IAE          +  TL  L   YA  +   E ++
Sbjct:   418 CLASRNHEILKLRNKSGLR--ARDIAESEVKPNYIFHERWTLALL--LYAIHSSGFESVK 473

Query:   407 QKR-QVSKEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDG--PDEGTATLLHR 463
                 Q    + +K +     L V+A L+          IPGG  SD   P+ G ATL   
Sbjct:   474 SLTIQSVPLDPKKNRHYVNALLVVAALVATVTFAAGFTIPGGYISDSKKPNLGRATLATN 533

Query:   464 ASFQAFVITDXXXXXXXXXXXXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVT 523
              +   F++ D                         ++ +L +A+     +L+ M +AF+ 
Sbjct:   534 PTLFIFLLFDILAMQSSVATICTLIWAQL-GDLALILKSLHVALPLLLFSLLCMPVAFLF 592

Query:   524 GLYAVLSNS--LAITIAVCVIGCLLPFIFYVSAPFFMI 559
             G+   +++   L +TI++   G  L F  ++  P  M+
Sbjct:   593 GVITAIAHVKWLLVTISIISGGFFL-FAIFILGPHVML 629

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 116/485 (23%), Positives = 217/485 (44%)

Query:    76 DETALHIAARIGDRAIVSEIMKYLPAVNQ---VGP---APVLE---SLFRMTDIEGNTPL 126
             ++T LH+AA+ GD A V +I+K + +  +    G    A V E   S+    +  G T L
Sbjct:    74 NDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETAL 133

Query:   127 HNAVTNQHKRVIRILVEKDSVPS-SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT 185
               A    H  V++ L++  S  S +  N++   PL IA     + I   ++D    +L+ 
Sbjct:   134 FTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDA-TLSQ 192

Query:   186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
             T  P   T +    MR + +++ ++L     L++    + +N LH AA  G+V++ + LL
Sbjct:   193 TFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALL 252

Query:   246 EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
              +  +LA + D  G+T LH+A +    +V+KLL++  P  +   + S  + LHVA +   
Sbjct:   253 SKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKR 312

Query:   306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV--NIRAKNHSA 363
               IV  +L  P+     N + R+  T L +A  GL       LS   S      A++ + 
Sbjct:   313 AEIVELLLSLPDTN--ANTLTRDHKTALDIAE-GL------PLSEESSYIKECLARSGAL 363

Query:   364 RSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMA 423
             R+N   +  +  R+   +I+  + ++  +T    +  +   + ++ +    EG       
Sbjct:   364 RANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNK--NVHNISKELRKLHREGINNA--T 419

Query:   424 QTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFVITDXXXXXXXXXX 483
              +++V+A L           +PGG  +DG    +A ++ RASF+ F I +          
Sbjct:   420 NSVTVVAVLFATVAFAAIFTVPGGDNNDG----SAVVVGRASFKIFFIFNALALFTSLAV 475

Query:   484 XXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLS--NSLAITIAVCV 541
                      R +T++    + +     W+A +  ++AF+   Y V+   N  A  +   V
Sbjct:   476 VVVQITLV-RGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVV 534

Query:   542 IGCLL 546
              G ++
Sbjct:   535 GGVIM 539

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 108/482 (22%), Positives = 212/482 (43%)

Query:    76 DETALHIAARIGDRAIVSEIMKYLPAV---NQVGP------APVLESLFRMTDIEGNTPL 126
             ++T LH+AA+ GD A V +I+  + +       G       A ++ S+    +  G TPL
Sbjct:    88 NDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVVNEVNELGETPL 147

Query:   127 HNAVTNQHKRVIRILVEKDSVPS-SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT 185
               A    +  V++ L+   ++ S    N +    L IA       I   +++  P+ L+ 
Sbjct:   148 FTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLLEHEPQ-LSK 206

Query:   186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
             T      T +     R + +++ ++L  +  L++    + +N LH AA  G+V + + LL
Sbjct:   207 TVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQGHVDIVRTLL 266

Query:   246 EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
             ++  +LA + D  G+T LH+A +    +V++LL+   P  + + +    ++LH+A +   
Sbjct:   267 DKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFGNTVLHIATRKKR 326

Query:   306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARS 365
               IV+ +L+ P+    +N + R+  T   +A    HS+    +       I ++  + ++
Sbjct:   327 AEIVNELLQLPDTN--VNALTRDHKTAYDIAEGLTHSEETAEIKE-----ILSRCGALKA 379

Query:   366 NTALEIAEITRANGKEIQKHLTLKALKTAYAKRALS--AEELQQKRQVSKEEGEKGKEMA 423
             N   +  +  R    EI+K +  +  +T    + +   A+EL++  +             
Sbjct:   380 NELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNA------T 433

Query:   424 QTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTATLLHRASFQAFVITDXXXXXXXXXX 483
              +++V+A L           +PGG   D  D G A ++H  SF+ F I +          
Sbjct:   434 NSVTVVAVLFATVAFAAIFTVPGG--DD--DHGVAVMVHATSFKIFFIFNAIALFTSLAV 489

Query:   484 XXXXXXXXXRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAVLS--NSLAITIAVCV 541
                      R +T++    + +     W+A V  T+AF++  Y V+   N  A  + V V
Sbjct:   490 VVVQITLV-RGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYA-AVVVTV 547

Query:   542 IG 543
             IG
Sbjct:   548 IG 549

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	580
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-28
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	9e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.003
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  110 bits (276), Expect = 1e-28
 Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 5/127 (3%)

Query: 219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
           +  D   R PLH AA++G++++ + LLE    +   +D +G TPLHLAA+NG L+++KLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           + K  D +  R+    + LH+AA++GN ++V  +L+       +N  D++G TPLHLAA 
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAK 115

Query: 339 GLHSDVV 345
             H +VV
Sbjct: 116 NGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  103 bits (260), Expect = 2e-26
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 420 KEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDE--GTATLL-HRASFQAFVITDTIA 476
           ++   +L V+ATLIAT TF A FT PGG   D      GT  L      F+AF +++TIA
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIA 64

Query: 477 MTSAMAAAAIIFWSFWRSKTESLMDTLPLAIGFTWIALVSMTLAFVTGLYAV 528
             +++  A I+      S +  L   L   +   W++L+S+ +AF  G Y V
Sbjct: 65  FVASL-VAVILLLYIVPSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 91.7 bits (228), Expect = 4e-22
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           D  T +H      + ++ VK+L  N   ++  D   R PLH AA +G++++ + LLE   
Sbjct: 6   DGRTPLHLAASNGHLEV-VKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KG 63

Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
                RD +G TPLHLAA NG L V+KLL+    D +  R+   R+ LH+AAK+G+  +V
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVV 122

Query: 310 SFIL 313
             +L
Sbjct: 123 KLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.9 bits (226), Expect = 9e-22
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 11/133 (8%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           RD +G TPLHLAA NG L+V+KLL+    D +  ++N  R+ LH+AAK+G+  IV  +L 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKNHSARSNTALEIAE 373
                  +N  D++GNTPLHLAA   + DVV  L      VN R K+      T L +A 
Sbjct: 62  KG---ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG----RTPLHLA- 113

Query: 374 ITRANGKEIQKHL 386
             +    E+ K L
Sbjct: 114 -AKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 38/163 (23%)

Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII 176
             D +G TPLH A +N H  V+++L+E  +  +   +   +TPL +A      +I   ++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
           +K                                 G +    D+       PLH AA +G
Sbjct: 61  EK---------------------------------GADVNARDK---DGNTPLHLAARNG 84

Query: 237 NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
           N+ + + LL+    +   RD +G TPLHLAA+NG L+V+KLL+
Sbjct: 85  NLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 7/98 (7%)

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI 322
           LHLAA+NG L+++KLL+ K  D      ++    LH+AA++GN  IV  +L   E    +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT---ALHLAARNGNLEIVKLLL---EHGADV 54

Query: 323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
           N  D++GNT LHLAA   + ++V  L  H + +I  K+
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA-DINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 50/175 (28%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV 130
            ++    T LH+AA  G   +V  +++    VN               D +G TPLH A 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-------------KDNDGRTPLHLAA 48

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPD 190
            N H  ++++L+EK +  ++  +K   TPL +A      D+   ++              
Sbjct: 49  KNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKH------------ 95

Query: 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                                G +    D+     R PLH AA +G++++ + LL
Sbjct: 96  ---------------------GADVNARDK---DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 195 IHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYK 254
           +H      N ++ VK+L      ++  D      LH AA +GN+++ + LLE    +  K
Sbjct: 1   LHLAAKNGNLEL-VKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPD 284
            D +G T LHLAA NG L+++KLL+    D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G   LH+A    + +V++ +L     +  +         +    T LH+AA+ G   IV 
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAK---------DNDGRTPLHLAAKNGHLEIVK 57

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++    VN               D +GNTPLH A  N +  V+++L++  +  ++  +
Sbjct: 58  LLLEKGADVN-------------ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA-RD 103

Query: 154 KAYQTPLSIAIDARLNDIA 172
           K  +TPL +A      ++ 
Sbjct: 104 KDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
            R+   R+ LH+AA +G+  +V  +L +      +N  D +G TPLHLAA   H ++V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 348 LSRHK-SVNIRAKNHSARSNTAL 369
           L      VN R K+     NT L
Sbjct: 59  LLEKGADVNARDKDG----NTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 37/256 (14%)

Query: 126 LHNAVTNQHKRVIRI-----LVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
           L++ +     R+I++     ++ +D +      K    PL +A +AR  D+   ++D   
Sbjct: 1   LYSYIVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPV-LPLYLAKEARNIDVVKILLDNG- 58

Query: 181 ESLNTTRLPDELTLIHFV-----VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA- 234
             +N++   +  T +H++      +    +I VK+L      ++  D +   PL YA + 
Sbjct: 59  ADINSSTK-NNSTPLHYLSNIKYNLTDVKEI-VKLLLEYGANVNAPDNNGITPLLYAISK 116

Query: 235 -SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG--KLKVLKLLINK---------- 281
            S +  + + LL+    +  K   +GE  LHL  E+    LK+LKLLI+K          
Sbjct: 117 KSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175

Query: 282 -----YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
                Y   I I++    + LH A  + N   V ++L   ++    NLV++ G+TPLH+A
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL---DLGANPNLVNKYGDTPLHIA 232

Query: 337 AMGLHSDVVFTLSRHK 352
            +  + ++   L  + 
Sbjct: 233 ILNNNKEIFKLLLNNG 248

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 67.3 bits (164), Expect = 7e-12
 Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 32/273 (11%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK-- 178
           E  TPL +A+ +   +++ + + K     ++IN     PL  AI    +DI   +ID   
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 179 ----------SPESLNT---------TRLPDELTLIHFVVMRQNYDIMVKILGTNKELID 219
                       + + T          +  +  T +H+ + + + +  +K+L      ++
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES-IKMLFEYGADVN 151

Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
             D +   P+H A       + + LLE+      K D NGE+PLH AAE G    +KLLI
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLI 210

Query: 280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
           + + + I  +  +  + LH A  H N + +  ++ +      IN  D +G+TPLH A   
Sbjct: 211 D-HGNHIMNKCKNGFTPLHNAIIH-NRSAIELLINNAS----INDQDIDGSTPLHHAINP 264

Query: 340 LHS-DVVFTLSRHKS-VNIRAKNHSARSNTALE 370
               D++  L  HK+ ++I+        +TA +
Sbjct: 265 PCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.5 bits (143), Expect = 7e-10
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 10/198 (5%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182
           N  L  A+         +L        +  +   + PL     A   D     +  +  +
Sbjct: 40  NLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPL--HSAASKGDDKIVKLLLASGA 97

Query: 183 LNTTRLPDELTLIHFVVMRQNYDI----MVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
               +  D  T +H   +  N       + K+L   G + ++ +  D     PLH+AA +
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
           G+  + + LLE        R+  G T L  AA+NG+++++KLL++K      ++ N +  
Sbjct: 158 GDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGV 216

Query: 296 ILHVAAKHGNWNIVSFIL 313
                +K    N+ S I+
Sbjct: 217 ANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL 272
            + +L +  D      L  A           L     R    RD +G  PLH AA  G  
Sbjct: 27  LSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDD 86

Query: 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN-----WNIVSFILRSPEMENLINLVDR 327
           K++KLL+    D +  ++    + LH+AA +GN       +   +L +    ++ NL D 
Sbjct: 87  KIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 328 NGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIA 372
           +GNTPLH AA+   +D+V   L      N R         TAL+ A
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSY----GVTALDPA 187

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
            R  LH AA SG +++ + LLE+   +  + D +G T LH+AAENG L+VLKLL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 11/248 (4%)

Query: 125 PLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLN 184
           PLH AV  ++  V++ L+ +    +   ++   TPL I      N +    + +   S+N
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHR-DLTPLHIICKEP-NKLG---MKEMIRSIN 94

Query: 185 TTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
              +   L  I      +N +I   IL    + I  +D    +           ++ + L
Sbjct: 95  KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDD-IIEAEITKLL 153

Query: 245 LEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
           L     +  K    G T LH A EN   ++ +LL++ Y   + I + ++ S LH A KH 
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHY 212

Query: 305 NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSAR 364
           N  IV  +L +       +  D+ GNTPLH++        +  L     V++ AK+    
Sbjct: 213 NKPIVHILLENGAS---TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS-YIL 268

Query: 365 SNTALEIA 372
             TAL  +
Sbjct: 269 GLTALHSS 276

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           LH+A +  N ++++ +L +           +        +TALH+AAR G+  IV  +++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA--------DVNLGDT---DTALHLAARNGNLEIVKLLLE 49

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
           +   VN               D +GNT LH A  N +  ++++L+E  +
Sbjct: 50  HGADVN-------------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           T LH AA +G+L+++K L+ K  D I   +    + LH+AA++GN  ++  +L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           L+   P  +   + +  + LH+AAK+G   +V ++L+       +NL D +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 16/102 (15%)

Query: 80  LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIR 139
           LH+AA+ G+     E++K L           LE    +   + +T LH A  N +  +++
Sbjct: 1   LHLAAKNGN----LELVKLL-----------LEKGADVNLGDTDTALHLAARNGNLEIVK 45

Query: 140 ILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
           +L+E  +  ++  +K   T L +A      +I   +++   +
Sbjct: 46  LLLEHGADVNA-KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 294 RSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           R+ LH AA  G   +V ++L   E    IN  D +GNT LH+AA   + +V+  L
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 57/288 (19%), Positives = 119/288 (41%), Gaps = 30/288 (10%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
           +G +P+  A+  +    I++L++  ++P        ++ L  A++   +  A   +    
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVE-EGDVKAVEELLDLG 91

Query: 181 ESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
           +  +     D +T +H   + +  DIM K+L       D  +  + +PLH A   G++K 
Sbjct: 92  KFADDVFYKDGMTPLHLATILKKLDIM-KLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150

Query: 241 AQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300
            + L++    L  + DC G TPL +A   G + + K+L++   +      N   + L  A
Sbjct: 151 IELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYA 209

Query: 301 AKHGNWNIVSFILRSPEMENLINLVD----------RNGNTPLHLAAMG-LHSDVVFTLS 349
            ++   +IV   ++     N++ +++           N  T L   A+  L +D+   + 
Sbjct: 210 IENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALIADIA--IR 267

Query: 350 RHKSVNIRAKNHSARSNTALE------------IAEITRANGKEIQKH 385
            HK    R +     + + +E            I E+ R   ++I K 
Sbjct: 268 IHKKTIRRDEGFK-NNMSTIEDKEEFKDVFEKCIIELRRIKSEKIGKK 314

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 36/171 (21%)

Query: 200 MRQNYDIMVKILGTNKELIDRLDWHQRNP------LHYAAAS--GNVKMAQRLLEESKR- 250
           + ++   +  I   N EL + L             LH  +      V+     L  + R 
Sbjct: 51  LGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRK 110

Query: 251 -----LAYKRDCN----GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD-------- 293
                LA  +  +    G T LHLAA     +++KLL+ +    +  R   D        
Sbjct: 111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGV 169

Query: 294 ------RSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
                  S L+ AA  G+ +IV+ +   P     I   D  GNT LHL  M
Sbjct: 170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVM 217

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 26/191 (13%)

Query: 124 TPLHNAVTNQH-----KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI------- 171
           TPLH     ++     K ++++L+E  +  ++  N    TPL  AI  + N         
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI-TPLLYAISKKSNSYSIVEYLL 128

Query: 172 --ACFIIDKSPESLNTTRL-----PDELTLIHFVVMRQNYDI----MVKILGTNKELIDR 220
                +  K+ +  N   L       +L ++  ++ +   DI     V  L +    I+ 
Sbjct: 129 DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRVNYLLSYGVPINI 187

Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            D +   PLHYA  + N +  + LL+         +  G+TPLH+A  N   ++ KLL+N
Sbjct: 188 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEIFKLLLN 246

Query: 281 KYPDAIEIRNN 291
             P    I   
Sbjct: 247 NGPSIKTIIET 257

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 28/182 (15%)

Query: 192 LTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV--KMAQRLLE 246
            T +H  +       ++K+L   G +    D++    R PLH   +  N+  K+ + LL 
Sbjct: 84  FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG---RTPLHVYLSGFNINPKVIRLLLR 140

Query: 247 ESKRLAYKRDCNGETPLH--LAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
           +   +    D  G TPL   L + N  +++L+LLI+   D     ++  RS+LH      
Sbjct: 141 KGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHL--- 195

Query: 305 NWNIVSFILRSPEMENLINL------VDRNGNTPLHLAAMGL---HSDVVFTLSRHKSVN 355
                SF  R+  +  LI         D  GNTPLH  A G     S V+  L    S+N
Sbjct: 196 ----QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN 251

Query: 356 IR 357
            R
Sbjct: 252 AR 253

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
           +G TPLHLAA NG L+V+KLL+    D +  R+ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD-VNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 30/214 (14%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
           K+   +T LH A + GD   +  + +Y   VN             + D  G  P+H A+ 
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVN-------------IEDDNGCYPIHIAIK 166

Query: 132 NQHKRVIRILVEKDS---VPSSYINKAYQTPLSIAIDARLNDIAC--FIIDKSPESLNTT 186
           +    +I++L+EK +   V  +       +PL  A  A   D AC   +ID     +N  
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGE----SPLHNA--AEYGDYACIKLLIDHGNHIMNKC 220

Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           +  +  T +H  ++   ++     L  N   I+  D     PLH+A           +L 
Sbjct: 221 K--NGFTPLHNAII---HNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL 275

Query: 247 ESKRLAYKRDCNGETPLHLAAEN-GKLKVLKLLI 279
             K     +D  GE P+  A +   K  V+K +I
Sbjct: 276 YHKADISIKDNKGENPIDTAFKYINKDPVIKDII 309

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
           +L      ++  D +   PLH AA  G +++ Q LL+        RD +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 34  GNAVLHMAVRFRNQQVIR-EILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIV 92
           G+  LH+A    N      E+ +    +       +   ++    T LH AA  GD  IV
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLL--LEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 93  SEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
             +++     N               +  G T L  A  N    ++++L++K    S   
Sbjct: 164 ELLLEAGADPNSR-------------NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLK 210

Query: 153 NKA 155
              
Sbjct: 211 FNL 213

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 54/255 (21%), Positives = 100/255 (39%), Gaps = 64/255 (25%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMD-ETALHIAARIGDRAIV 92
           G + + +A++FR+ + I+          L + +  +      D E+ LH A   GD   V
Sbjct: 35  GISPIKLAMKFRDSEAIK----------LLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84

Query: 93  SEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
            E++      + V         ++    +G TPLH A   +   ++++L+ + + P    
Sbjct: 85  EELLDLGKFADDV--------FYK----DGMTPLHLATILKKLDIMKLLIARGADP---- 128

Query: 153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG 212
                            DI            NT    D+ + +H  VM  +    +++L 
Sbjct: 129 -----------------DIP-----------NT----DKFSPLHLAVMMGDIK-GIELLI 155

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETPLHLAAENG 270
            +K  +D  D     PL  A A G++ + + LL+    + Y  K  C     L  A EN 
Sbjct: 156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC--VAALCYAIENN 213

Query: 271 KLKVLKLLINKYPDA 285
           K+ +++L I +  D 
Sbjct: 214 KIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300
           LLE         D NG TPLHLAA+ G L++++ L+    D + +R++   + L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 48/244 (19%)

Query: 119 DIEGNTPLHNAVTNQHK-RVIRILVEKDSVPSSYIN---KAYQTPLSI-----AIDARLN 169
           +  G TPLH  + N     VI++L++      + +N   K  +TPL +      I+    
Sbjct: 80  ERCGFTPLHLYLYNATTLDVIKLLIKA----GADVNAKDKVGRTPLHVYLSGFNINP--- 132

Query: 170 DIACFIIDK--SPESLNTTRLPDELTLIHFVVMRQNYDI-MVKIL------GTNKELIDR 220
            +   ++ K     +L+       +T +  ++  +N ++ ++++L          +   R
Sbjct: 133 KVIRLLLRKGADVNALDL----YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188

Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRL---AYKRDCNGETPLHLAAENG---KLKV 274
                 + LH+   S   K   R++ E  R        D  G TPLH  A      +  V
Sbjct: 189 ------SLLHHHLQS--FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV 240

Query: 275 LKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
           L LLI     +I  RN   ++ LH AA   N      ++    +   IN V  +GNTPL 
Sbjct: 241 LPLLIAGI--SINARNRYGQTPLHYAAVFNNPRACRRLIA---LGADINAVSSDGNTPLS 295

Query: 335 LAAM 338
           L   
Sbjct: 296 LMVR 299

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPD 284
           +G TPLHLAAENG L+V+KLL++K  D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 323 NLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKNHSARSNTALEIA 372
           N  D +G TPLHLAA   H +VV  L      VN +  +      T L +A
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG----RTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 38/119 (31%)

Query: 233 AASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
           AASG+  +  R+L         RD +G TPLH+A  NG ++V+++L+    D        
Sbjct: 90  AASGDA-VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP------- 141

Query: 293 DRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
                                          L+D++G TPL LA      +VV  LSRH
Sbjct: 142 ------------------------------TLLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPD 284
           +G TPLHLAA NG L+++KLL+    D
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
            +IL T     +  D+  R PLH A A+G+V++ + LLE         D +G+TPL LA 
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAE 156

Query: 268 ENGKLKVLKLL 278
           ENG  +V++LL
Sbjct: 157 ENGFREVVQLL 167

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 50/244 (20%)

Query: 63  RLHYSLLRQKNL---MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119
                LL   +    + +T LH A  +     V  I+ +L A  +      L +    ++
Sbjct: 66  LELTELLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124

Query: 120 I-EGNTPLHNAVTNQHKRVIRILVEKD-SVP----------SSYINKAY--QTPLSIAID 165
              G T LH A   Q+  ++++L+E+  SVP          S  ++  Y  ++PL+ A  
Sbjct: 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAA-- 182

Query: 166 ARLNDIACF----IIDKSPESLNTTRLPDEL--TLIHFVVM------------RQNYDIM 207
                 AC     I+    E        D L  TL+H +VM             Q Y+  
Sbjct: 183 ------ACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFA 236

Query: 208 VKILG---TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-ESKRLAYKRDCNGETPL 263
           + +L     +KEL   L+     PL  AA  G + + +  L  + K+  +    NG    
Sbjct: 237 LSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNG--QQ 294

Query: 264 HLAA 267
            L+ 
Sbjct: 295 LLSL 298

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 22  LRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81
           L + I   +S G N   H A R     +I    R   FI    H + L   +   +  +H
Sbjct: 10  LEEMIAEKNSEGEN-FFHEAARCGCFDIIA---RFTPFIRGDCHAAALNATDDAGQMCIH 65

Query: 82  IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRIL 141
           IAA   +  + +EI+ +L  +           +     +EG+T LH A   +   +   L
Sbjct: 66  IAAEKHEAQLAAEIIDHLIELGA--------DINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Query: 142 VEKDSVPSSYINKAYQTPLSIAIDAR 167
             +  +   + N   ++P  +AID  
Sbjct: 118 CCQPGIDLHFCNADNKSPFELAIDNE 143

Length = 169

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 226 RNPLHY--AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG-KLKVLKLLINKY 282
           + PLH     +S  VK   RLL E+       +  G TPLHL   N   L V+KLLI   
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG 107

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINL------VDRNGNTPLH 334
            D +  ++   R+ LHV      +NI   ++R      L+        +D  G TPL 
Sbjct: 108 AD-VNAKDKVGRTPLHVYLS--GFNINPKVIRL-----LLRKGADVNALDLYGMTPLA 157

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 70/301 (23%), Positives = 119/301 (39%), Gaps = 57/301 (18%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNA--VTNQHK 135
           TA+H A ++    IV EI++  P             L  +TD + ++ LH    + N   
Sbjct: 43  TAIHQALQLRQIDIVEEIIQQNP------------ELIYITDHKCHSTLHTICIIPNVMD 90

Query: 136 RVIRILVEKDSV-----PSSYINKAYQTPLSIAIDARL---NDIACFIIDKSPESLNTT- 186
            VI + ++ D +      S  +NK       I I       NDI    I++S E +    
Sbjct: 91  IVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIK 150

Query: 187 -RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
            R+  +  LI  +++    D+  K            D +   P+HYAA  GN KM   L 
Sbjct: 151 ERIQQDELLIAEMLLEGGADVNAK------------DIYCITPIHYAAERGNAKMVNLL- 197

Query: 246 EESKRLAYKRDCN-----GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300
                L+Y  D N       + L  A ++  +  +K +I+        R+N +++ L + 
Sbjct: 198 -----LSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN-------RSNINKNDLSLL 245

Query: 301 AKHGNWNI-VSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359
               N ++  S +L        +N +D   NTPLH A+       +      +  ++ AK
Sbjct: 246 KAIRNEDLETSLLLYDAGFS--VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK 303

Query: 360 N 360
           N
Sbjct: 304 N 304

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	580
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
PF13962	113	PGG: Domain of unknown function	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.26
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.05
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.74
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.66
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.64
PF13606	30	Ank_3: Ankyrin repeat	98.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.51
PF13606	30	Ank_3: Ankyrin repeat	98.5
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.49
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.49
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.26
KOG0522	560	consensus Ankyrin repeat protein [General function	98.26
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.17
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.13
KOG0511	516	consensus Ankyrin repeat protein [General function	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.82
KOG0511	516	consensus Ankyrin repeat protein [General function	97.79
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.75
KOG2384	223	consensus Major histocompatibility complex protein	97.57
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.57
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.19
KOG2505	591	consensus Ankyrin repeat protein [General function	96.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.15
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.89
KOG2505	591	consensus Ankyrin repeat protein [General function	95.25
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.13
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.95
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.56
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.25
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.88
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.1
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.75

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-46  Score=409.24  Aligned_cols=361  Identities=21%  Similarity=0.223  Sum_probs=301.3

Q ss_pred             CCH-HHHHHHHcCCHHHHHHHhhhc------CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhccccc
Q 045393            1 MDQ-ELLEVLRHGDEYKIKQLALRQ------DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKN   73 (580)
Q Consensus         1 m~~-~L~~A~~~g~~~~~~~ll~~~------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   73 (580)
                      ||| .|+.++..|+.+-+..++.+.      ......+..+.||||.|+..|+.|+|+.|++.+++        .+...|
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~--------~~~~~~   72 (682)
T PHA02876          1 MCPDDLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPE--------LIYITD   72 (682)
T ss_pred             CChHHHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcc--------cchhhc
Confidence            665 899999999986655555442      22233467789999999999999999999999987        567788


Q ss_pred             CCCCcHHHHHH---------------------------------------------------------------------
Q 045393           74 LMDETALHIAA---------------------------------------------------------------------   84 (580)
Q Consensus        74 ~~g~tpLh~Aa---------------------------------------------------------------------   84 (580)
                      ..|.||||+|+                                                                     
T Consensus        73 ~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (682)
T PHA02876         73 HKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKER  152 (682)
T ss_pred             hhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHH
Confidence            88999999666                                                                     


Q ss_pred             -HhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH
Q 045393           85 -RIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (580)
Q Consensus        85 -~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  163 (580)
                       ..|+.+++++|++.|++++             .+|..|.||||+|++.|+.++|++|+++|++.+ ..+..|.||||.|
T Consensus       153 i~~~~~~i~k~Ll~~Gadvn-------------~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A  218 (682)
T PHA02876        153 IQQDELLIAEMLLEGGADVN-------------AKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECA  218 (682)
T ss_pred             HHCCcHHHHHHHHhCCCCCC-------------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHH
Confidence             4577888999999998876             478899999999999999999999999999887 5688899999999


Q ss_pred             HHcCcHHHHHHHHhcCCC----------------------------CcCCCCCCCCccHHHHHHHcCCH-HHHHHHHhhC
Q 045393          164 IDARLNDIACFIIDKSPE----------------------------SLNTTRLPDELTLIHFVVMRQNY-DIMVKILGTN  214 (580)
Q Consensus       164 ~~~~~~~~v~~Ll~~~~~----------------------------~~~~~~~~~~~t~L~~A~~~~~~-~~~~~Ll~~~  214 (580)
                      +..++.++++.|++.+..                            +.+..+. .|.||||.|+..++. ++++.|++.+
T Consensus       219 ~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-~g~TpLh~Aa~~~~~~~iv~lLl~~g  297 (682)
T PHA02876        219 VDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD-CKNTPLHHASQAPSLSRLVPKLLERG  297 (682)
T ss_pred             HHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCHHHHHHHHHHCC
Confidence            999999999888876542                            2233333 789999999999987 4677777766


Q ss_pred             CccccccCCCCChHHHHHHHcC-ChHHHHHHHHhchhcccccCCCCCcHHHHHHHc-CcHHHHHHHHHhCCCccccccCC
Q 045393          215 KELIDRLDWHQRNPLHYAAASG-NVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN-GKLKVLKLLINKYPDAIEIRNNS  292 (580)
Q Consensus       215 ~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~  292 (580)
                      .+ ++..|..|.||||+|+..| +.++++.|++.|+++ +..|..|.||||+|+.. ++.++++.|++.|++ ++.+|..
T Consensus       298 ad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~  374 (682)
T PHA02876        298 AD-VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYC  374 (682)
T ss_pred             CC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCC
Confidence            54 8889999999999999999 589999999999887 67888999999999985 578899999999999 8999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh-hHHHHhhcCcccccccccccCCCCCHHHH
Q 045393          293 DRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS-DVVFTLSRHKSVNIRAKNHSARSNTALEI  371 (580)
Q Consensus       293 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~  371 (580)
                      |+||||+|+..|+.+++++|++.|   ++++..+..|.||||+|+..++. .+++.|++ .|+++|.+|.  .|+|||++
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~~g---ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~--~G~TpLh~  448 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLDYG---ADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNK--DLSTPLHY  448 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC---CCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCC--CCChHHHH
Confidence            999999999999999999999984   44888889999999999887664 55777775 4899999999  99999999


Q ss_pred             HHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          372 AEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       372 a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      |+..      ....++++.|++.|++..
T Consensus       449 Aa~~------~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        449 ACKK------NCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             HHHh------CCcHHHHHHHHHCCCCCC
Confidence            9861      124578889999888754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=9.7e-46  Score=377.94  Aligned_cols=337  Identities=17%  Similarity=0.170  Sum_probs=282.8

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHh--cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVR--FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      +++.++..++.+.++.++...     ....+.++||.++.  .++.++|++|+++|++         ++.+|..|.||||
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-----~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad---------vn~~d~~G~TpLh   77 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-----EPSGNYHILHAYCGIKGLDERFVEELLHRGYS---------PNETDDDGNYPLH   77 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-----CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCC---------CCccCCCCCCHHH
Confidence            468888999999999998742     12234789998764  4578999999999998         8899999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcC--cHHHHHHHHHcCCCCCcccccCCCCH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ--HKRVIRILVEKDSVPSSYINKAYQTP  159 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~tp  159 (580)
                      +|+..|+.+++++|+++|++++             .+|.+|.||||+|+..+  ..+++++|+++|++++...+..|.||
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAdin-------------~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGADPN-------------ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            9999999999999999999876             47889999999998765  48899999999999886678899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCC--HHHHHHHHhhCCccccccCCCCChHHHHHHHcC-
Q 045393          160 LSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN--YDIMVKILGTNKELIDRLDWHQRNPLHYAAASG-  236 (580)
Q Consensus       160 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g-  236 (580)
                      |+ |+..++.+++++|++.+. +.+..+. .|.||||.|+..++  .+++++|++.+.+ ++.+|.+|.||||+|+..+ 
T Consensus       145 L~-aa~~~~~~vv~~Ll~~ga-d~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGF-EARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccc-cccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCC
Confidence            97 666789999999999884 5555665 89999999887654  6889999988766 8889999999999999886 


Q ss_pred             -ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc-HHHHHHHHHhCCCc-------------------cccc-cCCCC
Q 045393          237 -NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK-LKVLKLLINKYPDA-------------------IEIR-NNSDR  294 (580)
Q Consensus       237 -~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~-------------------~~~~-d~~g~  294 (580)
                       +.++++.|++ ++++ +.+|..|.||||+|+..++ .+++++|++++.+.                   ++.. +..|+
T Consensus       221 ~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~  298 (446)
T PHA02946        221 KNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDS  298 (446)
T ss_pred             CcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCC
Confidence             7889998885 7776 7889999999999999988 58999999887641                   1111 23578


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      ||||+|+.+|+.+++++|++++          .+|.||||+|+..++.++++.|+.+ |+++|.+ .  .|.||+++|..
T Consensus       299 TpLh~Aa~~g~~eivk~Ll~~~----------~~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~--~G~t~l~~a~~  364 (446)
T PHA02946        299 TDFKMAVEVGSIRCVKYLLDND----------IICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-V--NGHTCMSECVR  364 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC----------CccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-c--ccccHHHHHHH
Confidence            9999999999999999999874          2579999999999999999999965 8999985 5  89999999998


Q ss_pred             HhhCChhhHHHHHHHHHHHh
Q 045393          375 TRANGKEIQKHLTLKALKTA  394 (580)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~  394 (580)
                             .+..++++.|++.
T Consensus       365 -------~~~~~~~~~ll~~  377 (446)
T PHA02946        365 -------LNNPVILSKLMLH  377 (446)
T ss_pred             -------cCCHHHHHHHHhc
Confidence                   5566777777763

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-45  Score=369.02  Aligned_cols=335  Identities=24%  Similarity=0.325  Sum_probs=293.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      .+++.++.+|..      +++-.+....|..+++|||+|+.....+.+++|++.|++         ..-+|..+.+|+|+
T Consensus        63 ~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad---------~~~~n~~~~aplh~  127 (929)
T KOG0510|consen   63 TELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGAD---------TPLRNLNKNAPLHL  127 (929)
T ss_pred             hHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCC---------CChhhhhccCchhh
Confidence            455555555544      222233345788899999999999999999999999998         78889999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..|+.+..+.|+++|.+++             ..|+.|.||||.||..++.|..+.|++.|+++. ..|..|..|+|.
T Consensus       128 A~~~~~~s~L~~Ll~~~~dvn-------------l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~  193 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADVN-------------LEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHE  193 (929)
T ss_pred             ccccchHHHHHHHHHhcCCcc-------------ccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHH
Confidence            999999999999999998876             588999999999999999998899999999987 589999999999


Q ss_pred             HHHcCcHHHHHHHHhcCC----CCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCcc--------------ccccCCC
Q 045393          163 AIDARLNDIACFIIDKSP----ESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL--------------IDRLDWH  224 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~--------------~~~~d~~  224 (580)
                      |+.+|..++.+..+.+.+    ..++..+. .+.+|||.|+..|+.++++.+++.+...              ++..|.+
T Consensus       194 aa~s~s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d  272 (929)
T KOG0510|consen  194 AARSGSKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND  272 (929)
T ss_pred             HHHhcchhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence            999999999999998332    24445555 8999999999999999999999876532              4566899


Q ss_pred             CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHH-hCCCccccccCCCCCHHHHHHHc
Q 045393          225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN-KYPDAIEIRNNSDRSILHVAAKH  303 (580)
Q Consensus       225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~  303 (580)
                      |.||||+|++.|++++++.|+..|++. +.++.++.||||.||++|+.+.++.|++ .+-...+..|..|.||||+|+++
T Consensus       273 g~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             CCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence            999999999999999999999999998 7788999999999999999999999999 66666788899999999999999


Q ss_pred             CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHH
Q 045393          304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI  371 (580)
Q Consensus       304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~  371 (580)
                      |+.+++++|+++|+........|.+|+||||+|+..|+..+++.|+.+ |+++..+|.  .|.|++++
T Consensus       352 gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~--~g~SA~~~  416 (929)
T KOG0510|consen  352 GHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNK--KGKSAFDT  416 (929)
T ss_pred             CHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccc--cccccccc
Confidence            999999999999655311115699999999999999999999999976 999999999  99999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-45  Score=398.82  Aligned_cols=350  Identities=19%  Similarity=0.190  Sum_probs=313.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      +.++.|++.|+.+++++|++.|...+..+..|.||||+|+..|+.++|++|+++|++         ++..+..|.||||+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad---------~n~~~~~g~t~L~~  217 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD---------VNIIALDDLSVLEC  217 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---------cCccCCCCCCHHHH
Confidence            457889999999999999999988888999999999999999999999999999998         78889999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..|+.++++.|++.+.+.+                 .+.++|+.|+..++.+++++|++.|.+.+ ..+..|.||||+
T Consensus       218 A~~~~~~~ivk~Ll~~~~~~~-----------------~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~TpLh~  279 (682)
T PHA02876        218 AVDSKNIDTIKAIIDNRSNIN-----------------KNDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLHH  279 (682)
T ss_pred             HHHcCCHHHHHHHHhcCCCCC-----------------CCcHHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHH
Confidence            999999999999999876643                 35679999999999999999999999887 468889999999


Q ss_pred             HHHcCcH-HHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC-CHHHHHHHHhhCCccccccCCCCChHHHHHHHc-CChH
Q 045393          163 AIDARLN-DIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ-NYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS-GNVK  239 (580)
Q Consensus       163 A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~  239 (580)
                      |+..++. +++++|++.+. +++..+. .|.||||.|+..| +.+.++.|+..+.+ ++..|..|.||||+|+.. ++.+
T Consensus       280 Aa~~~~~~~iv~lLl~~ga-din~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~  356 (682)
T PHA02876        280 ASQAPSLSRLVPKLLERGA-DVNAKNI-KGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKD  356 (682)
T ss_pred             HHhCCCHHHHHHHHHHCCC-CCCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHH
Confidence            9999986 68999999884 4555665 8999999999999 58889988888766 889999999999999986 4789


Q ss_pred             HHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCC-HHHHHHHhcCcch
Q 045393          240 MAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN-WNIVSFILRSPEM  318 (580)
Q Consensus       240 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~~~~  318 (580)
                      +++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++ ..++++|++.|  
T Consensus       357 iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g--  432 (682)
T PHA02876        357 IVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDRG--  432 (682)
T ss_pred             HHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhCC--
Confidence            999999999988 78899999999999999999999999999999 88999999999999998766 56799999984  


Q ss_pred             hhhcccccCCCCcHHHHHHhcC-ChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393          319 ENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK  397 (580)
Q Consensus       319 ~~~~n~~d~~G~T~Lh~A~~~~-~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  397 (580)
                       +++|.+|..|+||||+|+..+ +.+++++|++. |+|+|.+|.  .|.||+++|...         ..+++.|+..|++
T Consensus       433 -adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~--~g~tpl~~a~~~---------~~~v~~Ll~~~a~  499 (682)
T PHA02876        433 -ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINI--QNQYPLLIALEY---------HGIVNILLHYGAE  499 (682)
T ss_pred             -CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCC--CCCCHHHHHHHh---------CCHHHHHHHCCCC
Confidence             559999999999999999976 68999999975 999999999  999999999861         2367778888877


Q ss_pred             hh
Q 045393          398 RA  399 (580)
Q Consensus       398 ~~  399 (580)
                      ..
T Consensus       500 ~~  501 (682)
T PHA02876        500 LR  501 (682)
T ss_pred             CC
Confidence            54

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=368.41  Aligned_cols=309  Identities=18%  Similarity=0.193  Sum_probs=267.3

Q ss_pred             HHHHHH--HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            4 ELLEVL--RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         4 ~L~~A~--~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      .||.++  ..++.++++.|++.|...+..+.+|.||||+|+..|+.++++.|+++|++         ++.+|..|.||||
T Consensus        40 ~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd---------in~~d~~g~TpLh  110 (446)
T PHA02946         40 ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD---------PNACDKQHKTPLY  110 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---------CCCCCCCCCCHHH
Confidence            455544  55688999999999988888999999999999999999999999999998         8899999999999


Q ss_pred             HHHHhC--CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCH
Q 045393           82 IAARIG--DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (580)
Q Consensus        82 ~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tp  159 (580)
                      +|+..+  ..++++.|+++|++++.            ..|.+|.|||| |+..++.+++++|++.|++.+ ..|..|+||
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gadin~------------~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~  176 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAKINN------------SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNH  176 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCCccc------------ccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCH
Confidence            999876  48999999999998763            25789999998 667799999999999999886 578999999


Q ss_pred             HHHHHHcCc--HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC--CHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393          160 LSIAIDARL--NDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (580)
Q Consensus       160 L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  235 (580)
                      ||.|+..++  .+++++|++.+. +++..+. .|.||||.|+..+  +.++++.|+. + .+++.+|..|.||||+|+..
T Consensus       177 Lh~A~~~~~~~~~~v~~Ll~~Ga-din~~d~-~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        177 IHRHLMSDNPKASTISWMMKLGI-SPSKPDH-DGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCC-CCcccCC-CCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHh
Confidence            999887554  689999999984 5566665 8999999999986  7888888885 4 55999999999999999999


Q ss_pred             CC-hHHHHHHHHhchhcc-------------------cc-cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC
Q 045393          236 GN-VKMAQRLLEESKRLA-------------------YK-RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR  294 (580)
Q Consensus       236 g~-~~~v~~Ll~~~~~~~-------------------~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  294 (580)
                      ++ .++++.|+++|+...                   +. .+..|.||||+|+.+|+.+++++|+++++        .|+
T Consensus       253 ~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~  324 (446)
T PHA02946        253 LSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICE  324 (446)
T ss_pred             CChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccc
Confidence            88 589999999875320                   11 12357899999999999999999999864        478


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ||||+|+.+++.+++++|+.++.   ++|.+ .+|+||||+|++.++.++++.|+.+
T Consensus       325 t~L~~A~~~~~~~~v~~Ll~~ga---~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYLLFNHF---SVDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             cHHHHHHHhCHHHHHHHHHHCCC---CCCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999954   48885 6899999999999999999999975

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-42  Score=355.19  Aligned_cols=316  Identities=19%  Similarity=0.243  Sum_probs=267.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHhhhc-CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcH
Q 045393            1 MDQELLEVLRHGDEYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETA   79 (580)
Q Consensus         1 m~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tp   79 (580)
                      |+..|..|+..||++.++.+++.+ ...+..+.+|.||||.|+..|+.++|++|++.|++         ++..+..|.||
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~---------~n~~~~~~~t~   71 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD---------INHINTKIPHP   71 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCCH
Confidence            677899999999999999999764 44455677899999999999999999999999998         78889999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCH
Q 045393           80 LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (580)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tp  159 (580)
                      ||.|+..|+.+++++|+++|++...                       .+....+.++++.|++.|.+++ ..+..|.||
T Consensus        72 L~~A~~~~~~~iv~~Ll~~g~~~~~-----------------------~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~  127 (434)
T PHA02874         72 LLTAIKIGAHDIIKLLIDNGVDTSI-----------------------LPIPCIEKDMIKTILDCGIDVN-IKDAELKTF  127 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCc-----------------------chhccCCHHHHHHHHHCcCCCC-CCCCCCccH
Confidence            9999999999999999999876421                       1223456789999999999887 478899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChH
Q 045393          160 LSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (580)
Q Consensus       160 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~  239 (580)
                      ||+|+..|+.+++++|++++. +++..+. .|.||||.|+..++.++++.|++.+.. ++..+..|.||||+|+..|+.+
T Consensus       128 Lh~A~~~~~~~~v~~Ll~~ga-d~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        128 LHYAIKKGDLESIKMLFEYGA-DVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             HHHHHHCCCHHHHHHHHhCCC-CCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999884 4455555 899999999999999999999998865 7788899999999999999999


Q ss_pred             HHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcC-CHHHHHHHhcCcch
Q 045393          240 MAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG-NWNIVSFILRSPEM  318 (580)
Q Consensus       240 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~Ll~~~~~  318 (580)
                      ++++|++.|++. +.++..|.||||.|+..+. +.+++|+ .+++ ++.+|..|+||||+|+..+ +.+++++|+++   
T Consensus       205 iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~---  277 (434)
T PHA02874        205 CIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYH---  277 (434)
T ss_pred             HHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC---
Confidence            999999999887 6678889999999998765 5666666 5677 7889999999999999875 78999999998   


Q ss_pred             hhhcccccCCCCcHHHHHHhcC-ChhHHHHhhcCccccccccc
Q 045393          319 ENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       319 ~~~~n~~d~~G~T~Lh~A~~~~-~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      +++++.+|..|+||||+|+..+ ..++++.|+.+ ++.++..+
T Consensus       278 gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~  319 (434)
T PHA02874        278 KADISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEAD  319 (434)
T ss_pred             cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhcc
Confidence            4558999999999999999887 56778888765 44444433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4e-43  Score=351.25  Aligned_cols=350  Identities=23%  Similarity=0.263  Sum_probs=299.2

Q ss_pred             HHHHcCCHH-HHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH
Q 045393            7 EVLRHGDEY-KIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR   85 (580)
Q Consensus         7 ~A~~~g~~~-~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~   85 (580)
                      ..+..+..+ ....+++........+..|.|++|.|+..+..      +++-..         ..+.|..|.||||+|+.
T Consensus        33 ~~~~~~~~dD~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~~~~---------~~a~D~~~n~~l~~a~~   97 (929)
T KOG0510|consen   33 SQALADTLDDRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSKLAI---------SYAKDSADNTPLHAAVE   97 (929)
T ss_pred             HHHHHhhHHHHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhhhhh---------hhhhhcccCchhHHHhh
Confidence            333444333 44445555555556778899999999998866      332222         56789999999999999


Q ss_pred             hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHH
Q 045393           86 IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID  165 (580)
Q Consensus        86 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  165 (580)
                      ....+.++.|++.|++.+             ..|.++.+|+|+|+..++.++.+.|+++|++++ ..+..+.||||.|+.
T Consensus        98 ~~~~~~i~~Lls~gad~~-------------~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn-l~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   98 YNQGDKIQVLLSYGADTP-------------LRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN-LEDENGFTPLHLAAR  163 (929)
T ss_pred             cchHHHHHHHHhcCCCCC-------------hhhhhccCchhhccccchHHHHHHHHHhcCCcc-ccccCCCchhhHHHh
Confidence            999999999999999865             478899999999999999999999999998887 689999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC----ccccccCCCCChHHHHHHHcCChHHH
Q 045393          166 ARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK----ELIDRLDWHQRNPLHYAAASGNVKMA  241 (580)
Q Consensus       166 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~d~~g~t~L~~A~~~g~~~~v  241 (580)
                      .++.|..+.|++.+.+ +...+. .|..|+|.|+..|..++.+..+.+.+    ..++..+..|.||||.|+..|+.+++
T Consensus       164 ~~~~E~~k~Li~~~a~-~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~l  241 (929)
T KOG0510|consen  164 KNKVEAKKELINKGAD-PCKSDI-DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEML  241 (929)
T ss_pred             cChHHHHHHHHhcCCC-CCcccC-cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHH
Confidence            9999988999998854 444444 89999999999999999999998322    23777889999999999999999999


Q ss_pred             HHHHHhchhcc--------------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393          242 QRLLEESKRLA--------------YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN  307 (580)
Q Consensus       242 ~~Ll~~~~~~~--------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  307 (580)
                      +..|+.+....              +..|++|.||||+|++.|+.+.++.|+..|++ ++.++.++.||||.|+.+|+.+
T Consensus       242 k~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  242 KMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRIN  320 (929)
T ss_pred             HHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHH
Confidence            99999885432              33578999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccc---cccccCCCCCHHHHHHHHhhCChhhHH
Q 045393          308 IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR---AKNHSARSNTALEIAEITRANGKEIQK  384 (580)
Q Consensus       308 iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~---~~n~~~~g~t~l~~a~~~~~~~~~~~~  384 (580)
                      .++-|++ ..+-.++|..|..|+||||+|+++|+.++++.|+.. |++.+   -.|.  +|.||||.|+.       .++
T Consensus       321 tv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~--dg~TaLH~Aa~-------~g~  389 (929)
T KOG0510|consen  321 TVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADS--DGNTALHLAAK-------YGN  389 (929)
T ss_pred             HHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-Chhhhccccccc--CCchhhhHHHH-------hcc
Confidence            9999999 333567999999999999999999999999999965 66665   3477  99999999998       567


Q ss_pred             HHHHHHHHHhhhhhh
Q 045393          385 HLTLKALKTAYAKRA  399 (580)
Q Consensus       385 ~~~~~~L~~~ga~~~  399 (580)
                      ...++.|+..|++.+
T Consensus       390 ~~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  390 TSAVQKLISHGADIG  404 (929)
T ss_pred             HHHHHHHHHcCCcee
Confidence            788999999999974

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.5e-42  Score=362.11  Aligned_cols=357  Identities=15%  Similarity=0.126  Sum_probs=265.0

Q ss_pred             HcCCHHHHHHHhhhc-Cccccc-CCCCCchhhHHHh--cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH
Q 045393           10 RHGDEYKIKQLALRQ-DIFSTS-SPGGNAVLHMAVR--FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR   85 (580)
Q Consensus        10 ~~g~~~~~~~ll~~~-~~~~~~-~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~   85 (580)
                      +.++.+++++|++.| ...+.. +..|.||||.|+.  .++.+++++|+++|++         ++.+|..|.||||+|++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD---------VN~kD~~G~TPLH~Aa~  221 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN---------VNLQNNHLITPLHTYLI  221 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC---------CCCCCCCCCCHHHHHHH
Confidence            468899999999988 555555 7889999998764  4678999999999988         88889999999999999


Q ss_pred             hCC--HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHH---HcCcHHHHHHHHHcCCCCCcccccCCCCHH
Q 045393           86 IGD--RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV---TNQHKRVIRILVEKDSVPSSYINKAYQTPL  160 (580)
Q Consensus        86 ~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL  160 (580)
                      .|+  .++|+.|+++|++++             .+|..|.||||+|+   .+++.|+++.|++.+.... .  .....++
T Consensus       222 ~g~~~~eIVklLLe~GADVN-------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~--~~~~~~L  285 (764)
T PHA02716        222 TGNVCASVIKKIIELGGDMD-------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-V--KNIPMIL  285 (764)
T ss_pred             cCCCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-c--ccchhhh
Confidence            885  489999999998876             47888999999875   4678899999988653221 1  1112233


Q ss_pred             H---HHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHH--cCCHHHHHHHHhhCCccccccCCCCChHHHHHHH-
Q 045393          161 S---IAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVM--RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA-  234 (580)
Q Consensus       161 ~---~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~-  234 (580)
                      +   .|+..|+.+++++|+++++ +++..+. .|.||||.|+.  .++.++++.|++.+.+ ++.+|..|+||||+|+. 
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GA-dIN~kD~-~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGV-KLHYKDS-AGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCC-ceeccCC-CCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHh
Confidence            3   3678899999999999885 4555565 89999998764  4578899999988765 88889999999998865 


Q ss_pred             -------------cCChHHHHHHHHhchhcccccCCCCCcHHHH----HHHcCcHHHHHHHHHhCCCccccc--------
Q 045393          235 -------------SGNVKMAQRLLEESKRLAYKRDCNGETPLHL----AAENGKLKVLKLLINKYPDAIEIR--------  289 (580)
Q Consensus       235 -------------~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~~~~~~--------  289 (580)
                                   .++.+++++|+++|+++ +.+|..|.||||.    |...++.+++++|++.+.. ....        
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~-~~~~~~~~q~ll  440 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL-NMVKHRILQDLL  440 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch-hhhhhhhhhhhh
Confidence                         36789999999999887 7788899999983    2335778999999987654 1111        


Q ss_pred             cCCCCCH--HHHHHHcCCHHHHHHHhcCc---------------chhhhcccccCCCCcHHHHHHhcCChh-----HHHH
Q 045393          290 NNSDRSI--LHVAAKHGNWNIVSFILRSP---------------EMENLINLVDRNGNTPLHLAAMGLHSD-----VVFT  347 (580)
Q Consensus       290 d~~g~t~--Lh~A~~~~~~~iv~~Ll~~~---------------~~~~~~n~~d~~G~T~Lh~A~~~~~~~-----~~~~  347 (580)
                      +..+.+|  +|.++..++.+...++.+..               .....+|.+|..|+||||+|+..|+.+     ++++
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~  520 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVY  520 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence            1222333  45555444433332222110               012346888999999999999998864     4599


Q ss_pred             hhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhhcc
Q 045393          348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALS  401 (580)
Q Consensus       348 Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~~  401 (580)
                      |++. |+|+|.+|.  .|+|||++|...  ...+....++++.|++.|+.....
T Consensus       521 LL~~-GADIN~~d~--~G~TPLh~A~~~--g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        521 LLSI-QYNINIPTK--NGVTPLMLTMRN--NRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHhC-CCCCcccCC--CCCCHHHHHHHc--CCccccHHHHHHHHHhcCCCcchH
Confidence            9965 999999999  999999999981  112234568999999988876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-42  Score=353.49  Aligned_cols=310  Identities=23%  Similarity=0.294  Sum_probs=269.5

Q ss_pred             chhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           36 AVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        36 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      ..|+.|+..|+.+.++.|++.++.        .++..+..|.||||.|++.|+.+++++|++.|++++            
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~--------~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n------------   62 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN--------CINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN------------   62 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence            358899999999999999987765        477788899999999999999999999999999876            


Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHH
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI  195 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L  195 (580)
                       ..+..|.||||.|+..|+.+++++|+++|++...           .+......++++.+++.+. +++..+. .|.|||
T Consensus        63 -~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~-d~n~~~~-~g~T~L  128 (434)
T PHA02874         63 -HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGI-DVNIKDA-ELKTFL  128 (434)
T ss_pred             -CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcC-CCCCCCC-CCccHH
Confidence             3678899999999999999999999999987542           1233457899999999884 4555555 899999


Q ss_pred             HHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393          196 HFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL  275 (580)
Q Consensus       196 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  275 (580)
                      |.|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|++. +..+..|.||||+|+..|+.+++
T Consensus       129 h~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv  206 (434)
T PHA02874        129 HYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACI  206 (434)
T ss_pred             HHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999998876 8889999999999999999999999999999887 67789999999999999999999


Q ss_pred             HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC-ChhHHHHhhcCccc
Q 045393          276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRHKSV  354 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~-~~~~~~~Ll~~~~~  354 (580)
                      ++|++++++ ++.++..|+||||.|+..++ +.+++|+.    +.++|.+|.+|+||||+|+..+ +.+++++|+.+ |+
T Consensus       207 ~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-ga  279 (434)
T PHA02874        207 KLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLYH-KA  279 (434)
T ss_pred             HHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC-cC
Confidence            999999999 78899999999999999876 56677764    4558999999999999999876 78999999965 99


Q ss_pred             ccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhh
Q 045393          355 NIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYA  396 (580)
Q Consensus       355 d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga  396 (580)
                      |++.+|.  .|+|||++|....      ....+++.|++.+.
T Consensus       280 d~n~~d~--~g~TpL~~A~~~~------~~~~~ik~ll~~~~  313 (434)
T PHA02874        280 DISIKDN--KGENPIDTAFKYI------NKDPVIKDIIANAV  313 (434)
T ss_pred             CCCCCCC--CCCCHHHHHHHhC------CccHHHHHHHHhcC
Confidence            9999999  9999999998721      13345566666554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-41  Score=347.39  Aligned_cols=367  Identities=14%  Similarity=0.123  Sum_probs=285.2

Q ss_pred             HHHHHHHHcC---CHHHHHHHhhhcCcccccCCCCCchhhHHHhcC--CHHHHHHHHhhCchhHHhhhhhhcccccCCCC
Q 045393            3 QELLEVLRHG---DEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFR--NQQVIREILRQQDFIALRLHYSLLRQKNLMDE   77 (580)
Q Consensus         3 ~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~   77 (580)
                      ++||.|+..|   +.++++.|++.|+..+..|..|+||||+|+..|  +.|+|++|++.|++       ...+..+..++
T Consensus        43 TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~-------~~~~~~~~~~d  115 (672)
T PHA02730         43 NALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN-------ASNELTSNIND  115 (672)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC-------CCcccccccCC
Confidence            6899999887   589999999999888888899999999998866  79999999998765       11455666788


Q ss_pred             cHHHHHHH--hCCHHHHHHHHh-cCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc---
Q 045393           78 TALHIAAR--IGDRAIVSEIMK-YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY---  151 (580)
Q Consensus        78 tpLh~Aa~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~---  151 (580)
                      +|||.++.  +++.+++++|++ .+.+++....        ...+..|.+|++++...++.|+|++|+++|++....   
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~--------~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTN--------YYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhh--------hhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            89888888  888999999996 5556542100        001247899999999999999999999999988522   


Q ss_pred             ----cccCCCCHHHHH------HHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHH--HHHcCCHHHHHHHHh-------
Q 045393          152 ----INKAYQTPLSIA------IDARLNDIACFIIDKSPESLNTTRLPDELTLIHF--VVMRQNYDIMVKILG-------  212 (580)
Q Consensus       152 ----~~~~g~tpL~~A------~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~--A~~~~~~~~~~~Ll~-------  212 (580)
                          .+....+.||+.      ..+++.|++++|+++| .+++.++. .|.||||.  +...++.|+++.|++       
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~-~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~  265 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDE-GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSV  265 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCC-CCCCHHHHHHHcCcccHHHHHHHHhccccccc
Confidence                222233445533      3567899999999999 46677777 99999995  445567999999998       


Q ss_pred             -------------------------hCCccccc--------------------cCCCCCh--------------------
Q 045393          213 -------------------------TNKELIDR--------------------LDWHQRN--------------------  227 (580)
Q Consensus       213 -------------------------~~~~~~~~--------------------~d~~g~t--------------------  227 (580)
                                               .+.+ ...                    .+..|.+                    
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q  344 (672)
T PHA02730        266 YDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQ  344 (672)
T ss_pred             cccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHH
Confidence                                     2322 222                    3445543                    


Q ss_pred             -HHHHHHHcC---ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCC-ccccccCCCCCHHH
Q 045393          228 -PLHYAAASG---NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPD-AIEIRNNSDRSILH  298 (580)
Q Consensus       228 -~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh  298 (580)
                       .||.-.+.+   +.++++.|+++|+++. .. ..|.||||+|+..++    .+++++|+++|++ .++.+|..|+||||
T Consensus       345 ~~l~~Y~~~~~~v~ieIvelLIs~GAdIN-~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        345 AMLINYLHYGDMVSIPILRCMLDNGATMD-KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHCCCCCC-cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence             566656655   5899999999999984 43 789999999998875    8999999999984 48889999999999


Q ss_pred             H---HHHcC---------CHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCC
Q 045393          299 V---AAKHG---------NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSN  366 (580)
Q Consensus       299 ~---A~~~~---------~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~  366 (580)
                      .   |...+         ..+++++|+++   ++++|.+|..|+||||+|+..++.+++++|+.+ |+++|.++.. .|.
T Consensus       423 ~~i~a~~~n~~~~~~e~~~~~ivk~LIs~---GADINakD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~-~g~  497 (672)
T PHA02730        423 GLILSRFNNCGYHCYETILIDVFDILSKY---MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRS-IIN  497 (672)
T ss_pred             HHHHHHhccccccccchhHHHHHHHHHhc---ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCc-CCc
Confidence            4   33332         23579999999   555999999999999999999999999999965 9999999961 489


Q ss_pred             CHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          367 TALEIAEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       367 t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      ||++.|....     ....++++.|++.|++..
T Consensus       498 TaL~~Aa~~~-----~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        498 TAIQKSSYRR-----ENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CHHHHHHHhh-----cCcHHHHHHHHHcCCCHH
Confidence            9999997611     135678999999988754

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-41  Score=343.39  Aligned_cols=352  Identities=17%  Similarity=0.145  Sum_probs=281.4

Q ss_pred             HHHHHHHhhhc-CcccccCCCCCchhhHHHhcC---CHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhC--
Q 045393           14 EYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFR---NQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIG--   87 (580)
Q Consensus        14 ~~~~~~ll~~~-~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g--   87 (580)
                      ...++..++.. .+....|.+|+||||+|+..|   +.|+|++|+++|++         ++.+|..|+||||+|+..+  
T Consensus        20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd---------in~kD~~G~TPLh~Aa~~~~~   90 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE---------RLCRNNEGLTPLGVYSKRKYV   90 (672)
T ss_pred             HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC---------CcccCCCCCChHHHHHHcCCC
Confidence            34566667766 555578889999999999997   59999999999999         8999999999999999977  


Q ss_pred             CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHH--cCcHHHHHHHHH-cCCCCCcccc----cCCCCHH
Q 045393           88 DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT--NQHKRVIRILVE-KDSVPSSYIN----KAYQTPL  160 (580)
Q Consensus        88 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~----~~g~tpL  160 (580)
                      +.++++.|++.|++.+.           +..+..+.+|||.++.  +++.+++++|++ .+.+++...+    ..|.+|+
T Consensus        91 ~~eIv~~Ll~~~~~~~~-----------~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~  159 (672)
T PHA02730         91 KSQIVHLLISSYSNASN-----------ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI  159 (672)
T ss_pred             cHHHHHHHHhcCCCCCc-----------ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh
Confidence            79999999999875421           1357779999999988  899999999997 5566664333    4789999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcCC------CCCCCCccHHHHHH------HcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393          161 SIAIDARLNDIACFIIDKSPESLNT------TRLPDELTLIHFVV------MRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (580)
Q Consensus       161 ~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~~~t~L~~A~------~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~  228 (580)
                      +++...++.+++++|+++++.....      .+.+...+.||+.+      ..++.++++.|+.+|.+ ++.+|..|.||
T Consensus       160 yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~Tp  238 (672)
T PHA02730        160 YVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLP  238 (672)
T ss_pred             hHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            9999999999999999999765211      22324456666443      45678999999999976 99999999999


Q ss_pred             HHH--HHHcCChHHHHHHHH--------------------------------hchhcccc--------------------
Q 045393          229 LHY--AAASGNVKMAQRLLE--------------------------------ESKRLAYK--------------------  254 (580)
Q Consensus       229 L~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~~--------------------  254 (580)
                      ||+  +...|+.|++++|++                                +|++. ..                    
T Consensus       239 Lh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~  317 (672)
T PHA02730        239 IQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITS  317 (672)
T ss_pred             HHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhcccc
Confidence            995  555677999999999                                45544 12                    


Q ss_pred             cCCCCCc---------------------HHHHHHHcC---cHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCC----H
Q 045393          255 RDCNGET---------------------PLHLAAENG---KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN----W  306 (580)
Q Consensus       255 ~~~~g~t---------------------pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~  306 (580)
                      .+..|.+                     .||.-...+   +.+++++|+++|++ ++.. ..|+||||+|+..++    .
T Consensus       318 ~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~  395 (672)
T PHA02730        318 YDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDV  395 (672)
T ss_pred             ccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchH
Confidence            3445543                     566666655   68999999999999 7764 799999999998875    8


Q ss_pred             HHHHHHhcCcchhhhcccccCCCCcHHHH---HHhcC---------ChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          307 NIVSFILRSPEMENLINLVDRNGNTPLHL---AAMGL---------HSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       307 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~---A~~~~---------~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +++++|+++|+. .++|.+|.+|.||||.   |...+         ..+++++|+.+ |+|+|.+|.  .|+|||++|..
T Consensus       396 eIvelLIs~Ga~-~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~--~G~TPLh~Aa~  471 (672)
T PHA02730        396 NVVRFIVENNGH-MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDN--ENKTLLYYAVD  471 (672)
T ss_pred             HHHHHHHHcCCC-ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCC--CCCCHHHHHHH
Confidence            999999998641 3589999999999994   33332         12468899965 999999999  99999999998


Q ss_pred             HhhCChhhHHHHHHHHHHHhhhhhhc
Q 045393          375 TRANGKEIQKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       375 ~~~~~~~~~~~~~~~~L~~~ga~~~~  400 (580)
                             ....++++.|++.||+...
T Consensus       472 -------~~~~eive~LI~~GAdIN~  490 (672)
T PHA02730        472 -------VNNIQFARRLLEYGASVNT  490 (672)
T ss_pred             -------hCCHHHHHHHHHCCCCCCC
Confidence                   4567889999999997544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-40  Score=348.54  Aligned_cols=282  Identities=20%  Similarity=0.237  Sum_probs=188.4

Q ss_pred             HHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcC---CHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            7 EVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFR---NQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         7 ~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      .++..++.+++++|++.|...+..+..|.||||+|+..|   +.++++.|++.|++         ++.++..|.||||+|
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad---------in~~~~~g~TpLh~A   90 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD---------VNAPERCGFTPLHLY   90 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC---------CCCCCCCCCCHHHHH
Confidence            456667777777777777666667777777777777777   77777777777777         677777777777777


Q ss_pred             HHhC-CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCcccccCCCCHH
Q 045393           84 ARIG-DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV--TNQHKRVIRILVEKDSVPSSYINKAYQTPL  160 (580)
Q Consensus        84 a~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL  160 (580)
                      +..| +.+++++|+++|++++             .+|..|.||||+|+  ..++.+++++|+++|++++ ..+..|.|||
T Consensus        91 ~~~~~~~~iv~lLl~~ga~in-------------~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL  156 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGADVN-------------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPL  156 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHH
Confidence            7777 4777777777777755             36667777777777  4456777777777777765 4567777777


Q ss_pred             HHHHHcC--cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHc--CCHHHHHHHHhhCCccccccCCCCChHHHHHHHcC
Q 045393          161 SIAIDAR--LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMR--QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG  236 (580)
Q Consensus       161 ~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g  236 (580)
                      |+|+..+  +.+++++|++++...... +. .|.||||.++..  ++.++++.|++.+.+ ++.+|..|.||||+|+..|
T Consensus       157 ~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        157 AVLLKSRNANVELLRLLIDAGADVYAV-DD-RFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             HHHHHcCCCCHHHHHHHHHcCCCCccc-CC-CCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence            7776654  466777777776433222 33 666666666643  455666666665544 5666666666666666666


Q ss_pred             Ch--HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 045393          237 NV--KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       237 ~~--~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      +.  .+++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+.++++.|++
T Consensus       234 ~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        234 SCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             CchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            43  4555666666655 45556666666666666666666666666666 56666666666666666666666666666


Q ss_pred             Cc
Q 045393          315 SP  316 (580)
Q Consensus       315 ~~  316 (580)
                      .+
T Consensus       312 ~~  313 (471)
T PHA03095        312 KN  313 (471)
T ss_pred             hC
Confidence            53

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-40  Score=344.90  Aligned_cols=291  Identities=20%  Similarity=0.227  Sum_probs=261.3

Q ss_pred             hHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhC---CHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           39 HMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIG---DRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        39 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      ..++..++.++|++|++.|++         ++.++..|.||||+|+..|   +.++++.|+++|++++            
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~---------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin------------   77 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD---------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN------------   77 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC---------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC------------
Confidence            456788999999999999998         8899999999999999999   9999999999999976            


Q ss_pred             hccCCCCCcHHHHHHHcC-cHHHHHHHHHcCCCCCcccccCCCCHHHHHH--HcCcHHHHHHHHhcCCCCcCCCCCCCCc
Q 045393          116 RMTDIEGNTPLHNAVTNQ-HKRVIRILVEKDSVPSSYINKAYQTPLSIAI--DARLNDIACFIIDKSPESLNTTRLPDEL  192 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  192 (580)
                       .++..|.||||+|+..+ +.+++++|+++|++++ ..+..|.||||.|+  ..++.+++++|++++. +++..+. .|.
T Consensus        78 -~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~ga-d~~~~d~-~g~  153 (471)
T PHA03095         78 -APERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA-DVNALDL-YGM  153 (471)
T ss_pred             -CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCC-CCCccCC-CCC
Confidence             47789999999999999 5999999999999987 57889999999999  5568899999999985 4555555 899


Q ss_pred             cHHHHHHHcC--CHHHHHHHHhhCCccccccCCCCChHHHHHHHc--CChHHHHHHHHhchhcccccCCCCCcHHHHHHH
Q 045393          193 TLIHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS--GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE  268 (580)
Q Consensus       193 t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  268 (580)
                      ||||.|+..+  +.++++.|++.+.. ++..|..|.||||.++..  ++.++++.|++.|+++ +.+|..|.||||+|+.
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~  231 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMAT  231 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHh
Confidence            9999999876  68999999999877 555699999999999875  7789999999999998 7889999999999999


Q ss_pred             cCcH--HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          269 NGKL--KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       269 ~g~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                      .|+.  .+++.|++.|.+ ++.+|..|+||||+|+..|+.+++++|++.   ++++|.+|.+|.||||+|+..|+.++++
T Consensus       232 ~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        232 GSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             cCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCCHHHHH
Confidence            9975  688999999999 899999999999999999999999999998   4559999999999999999999999999


Q ss_pred             HhhcCcccccccccc
Q 045393          347 TLSRHKSVNIRAKNH  361 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~  361 (580)
                      .|+.. +++++....
T Consensus       308 ~LL~~-~~~~~~~~~  321 (471)
T PHA03095        308 AALAK-NPSAETVAA  321 (471)
T ss_pred             HHHHh-CCCHHHHHH
Confidence            99965 667665443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-39  Score=343.61  Aligned_cols=359  Identities=13%  Similarity=0.062  Sum_probs=234.3

Q ss_pred             HHHHHHHHc---CCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHH----HHHHHHhhCchhHHhhhhhhcccccCC
Q 045393            3 QELLEVLRH---GDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQ----VIREILRQQDFIALRLHYSLLRQKNLM   75 (580)
Q Consensus         3 ~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~   75 (580)
                      ++||.|++.   |+.++++.|++.|...+..+..|.||||+|+..|+.+    +++.|++.+..         .+..+  
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~---------~n~~~--  102 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY---------SNIND--  102 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC---------CCCCC--
Confidence            577876444   7788888888887666667778888888888877743    44556654332         11111  


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCcc--
Q 045393           76 DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV--TNQHKRVIRILVEKDSVPSSY--  151 (580)
Q Consensus        76 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~--  151 (580)
                      ..+++|.|+.+|+.++|++|+++|++++             .+|.+|.||||.|+  .+|+.+++++|+++|++++..  
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin-------------~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLS-------------VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCC-------------ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence            1245555666666666666666666654             46667777777443  456777777777777766521  


Q ss_pred             cccCC-----------CCHHHHHHH-----------cCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCH--HHH
Q 045393          152 INKAY-----------QTPLSIAID-----------ARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNY--DIM  207 (580)
Q Consensus       152 ~~~~g-----------~tpL~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~~  207 (580)
                      .+..|           .||||+|+.           .++.+++++|+++|. +++..+. .|.||||.|+.+|+.  +++
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga-dvn~~d~-~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI-KPSSIDK-NYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC-CcccCCC-CCCcHHHHHHHcCCCcHHHH
Confidence            11222           477777764           346777777777773 4455554 777777777777764  577


Q ss_pred             HHHHhhCCccc---cccCCCCChHHHHHHHc---------CChHHHHHHHHhchhccc------cc------------CC
Q 045393          208 VKILGTNKELI---DRLDWHQRNPLHYAAAS---------GNVKMAQRLLEESKRLAY------KR------------DC  257 (580)
Q Consensus       208 ~~Ll~~~~~~~---~~~d~~g~t~L~~A~~~---------g~~~~v~~Ll~~~~~~~~------~~------------~~  257 (580)
                      +.|++ +.+..   ...|..|.+|+|+|+..         .+.++++.|++.|++...      ..            ..
T Consensus       248 k~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (661)
T PHA02917        248 KLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTM  326 (661)
T ss_pred             HHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHh
Confidence            77653 43321   23455566666666631         155677777777754210      00            11


Q ss_pred             CCCcHHHHHH---HcCc--HHHHHHHHHhCCCc-----------------------------cccccCCCCCHHHHHHHc
Q 045393          258 NGETPLHLAA---ENGK--LKVLKLLINKYPDA-----------------------------IEIRNNSDRSILHVAAKH  303 (580)
Q Consensus       258 ~g~tpL~~A~---~~g~--~~~v~~Ll~~~~~~-----------------------------~~~~d~~g~t~Lh~A~~~  303 (580)
                      .+.+++|.+.   ..|.  .+++++|+++|++.                             +...+.+|+||||.|++.
T Consensus       327 ~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~  406 (661)
T PHA02917        327 NSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKS  406 (661)
T ss_pred             chHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHh
Confidence            2233333222   3444  34666666655541                             233455799999999854


Q ss_pred             CC-----------------------HHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCccccccccc
Q 045393          304 GN-----------------------WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       304 ~~-----------------------~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      ++                       .+++++|+++|   +++|.+|..|+||||+|+..++.+++++|+.. |+|+|.++
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G---AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAdin~~d  482 (661)
T PHA02917        407 NYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL---KDINMIDKRGETLLHKAVRYNKQSLVSLLLES-GSDVNIRS  482 (661)
T ss_pred             cccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC---CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCCCCCCC
Confidence            32                       56789999994   55999999999999999999999999999964 99999999


Q ss_pred             ccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhhc
Q 045393          361 HSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       361 ~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  400 (580)
                      .  .|+|||++|...      ....++++.|++.|++...
T Consensus       483 ~--~G~T~L~~A~~~------~~~~~iv~~LL~~ga~i~~  514 (661)
T PHA02917        483 N--NGYTCIAIAINE------SRNIELLKMLLCHKPTLDC  514 (661)
T ss_pred             C--CCCCHHHHHHHh------CCCHHHHHHHHHcCCChhH
Confidence            9  999999999841      1346788889988876543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.8e-39  Score=336.81  Aligned_cols=349  Identities=15%  Similarity=0.070  Sum_probs=270.6

Q ss_pred             HHHHHHHH--cCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCC--HHHHHHHHhhCchhHHhhhhhhcccccCCCCc
Q 045393            3 QELLEVLR--HGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRN--QQVIREILRQQDFIALRLHYSLLRQKNLMDET   78 (580)
Q Consensus         3 ~~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (580)
                      ++||.|+.  .++.+++++|++.|...+..+..|.||||+|+..|+  .++|+.|++.|++         ++.+|..|+|
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD---------VN~kD~~G~T  249 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD---------MDMKCVNGMS  249 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC---------CCCCCCCCCC
Confidence            57888764  478999999999998888899999999999999995  5999999999999         8999999999


Q ss_pred             HHHHHH---HhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHH---HHHHcCcHHHHHHHHHcCCCCCccc
Q 045393           79 ALHIAA---RIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLH---NAVTNQHKRVIRILVEKDSVPSSYI  152 (580)
Q Consensus        79 pLh~Aa---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~---~A~~~~~~~~v~~Ll~~~~~~~~~~  152 (580)
                      |||.|+   .+++.++++.|++.+....               .....++++   .|++.|+.+++++|+++|++++ ..
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~---------------~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~k  313 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNK---------------VKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YK  313 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccc---------------cccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-cc
Confidence            999885   5689999999998653311               111223344   4789999999999999999877 57


Q ss_pred             ccCCCCHHHHHHH--cCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHH--------------cCCHHHHHHHHhhCCc
Q 045393          153 NKAYQTPLSIAID--ARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVM--------------RQNYDIMVKILGTNKE  216 (580)
Q Consensus       153 ~~~g~tpL~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~--------------~~~~~~~~~Ll~~~~~  216 (580)
                      |..|+||||+|+.  .++.+++++|++++. +++..+. .|.||||.|+.              .++.++++.|++.+.+
T Consensus       314 D~~G~TPLH~Aaa~~~~~~eIVklLLe~GA-DIN~kD~-~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD  391 (764)
T PHA02716        314 DSAGRTCLHQYILRHNISTDIIKLLHEYGN-DLNEPDN-IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD  391 (764)
T ss_pred             CCCCCCHHHHHHHHhCCCchHHHHHHHcCC-CCccCCC-CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence            9999999999764  467899999999985 5666666 89999999875              3688999999998866


Q ss_pred             cccccCCCCChHHHHH----HHcCChHHHHHHHHhchhcccc-------cCCCCCcH--HHHHHHcCcHHH---------
Q 045393          217 LIDRLDWHQRNPLHYA----AASGNVKMAQRLLEESKRLAYK-------RDCNGETP--LHLAAENGKLKV---------  274 (580)
Q Consensus       217 ~~~~~d~~g~t~L~~A----~~~g~~~~v~~Ll~~~~~~~~~-------~~~~g~tp--L~~A~~~g~~~~---------  274 (580)
                       ++.+|..|+||||.+    ...++.+++++|++.++.....       .+..+.+|  +|.++..++.+.         
T Consensus       392 -In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~  470 (764)
T PHA02716        392 -ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEP  470 (764)
T ss_pred             -CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhh
Confidence             899999999999942    3356799999999987532110       01223333  555555544332         


Q ss_pred             ---------HHHHHHhCCCccccccCCCCCHHHHHHHcCCH-----HHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          275 ---------LKLLINKYPDAIEIRNNSDRSILHVAAKHGNW-----NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       275 ---------v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-----~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                               +..++..+.+ ++..|..|+||||+|+..|+.     +++++|++.   ++++|.+|++|+||||+|+++|
T Consensus       471 ~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        471 YDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             ccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcC
Confidence                     2333334444 677899999999999999887     455999999   4559999999999999999999


Q ss_pred             Ch-----hHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          341 HS-----DVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       341 ~~-----~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      +.     ++++.||++ |++++..        .+.++..       ..+..+...|.++++...
T Consensus       547 ~~~~~~~eIvk~LL~~-ga~~~~~--------~l~~~~~-------~~~~~~~~ll~~~~~~~~  594 (764)
T PHA02716        547 RLSGHQWYIVKNILDK-RPNVDIV--------IIFLDKC-------YANGKFPSLLLSEDDIIK  594 (764)
T ss_pred             CccccHHHHHHHHHhc-CCCcchH--------HHHHHhh-------hhhhHHHHHHHHcchhHH
Confidence            76     999999974 7766554        3566554       345566777777776544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.7e-39  Score=340.01  Aligned_cols=349  Identities=15%  Similarity=0.101  Sum_probs=273.1

Q ss_pred             HHHHHHHhhhcCcccccCCCCCchhhHHHhc---CCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHH
Q 045393           14 EYKIKQLALRQDIFSTSSPGGNAVLHMAVRF---RNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRA   90 (580)
Q Consensus        14 ~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~   90 (580)
                      ++.+++++..+...+..|.+|+||||+|+..   |+.++|++|++.|++         ++.++..|.||||.|+..|+.+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~---------v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN---------PLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC---------ccccCCCCCCHHHHHHHcCChh
Confidence            5778999988887787899999999997555   889999999999998         7889999999999999999854


Q ss_pred             ----HHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHH--
Q 045393           91 ----IVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI--  164 (580)
Q Consensus        91 ----~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--  164 (580)
                          +++.|++.+...+             ..+  ..+++|.|+.+++.++|++|+++|++++ ..|..|.||||.++  
T Consensus        83 v~~~~~~~Ll~~~~~~n-------------~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~  146 (661)
T PHA02917         83 VNKDIAMALLEATGYSN-------------IND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMT  146 (661)
T ss_pred             HHHHHHHHHHhccCCCC-------------CCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHc
Confidence                5677877654322             111  2367888999999999999999999998 57889999999654  


Q ss_pred             HcCcHHHHHHHHhcCCCCcCCCC---C----------CCCccHHHHHHH-----------cCCHHHHHHHHhhCCccccc
Q 045393          165 DARLNDIACFIIDKSPESLNTTR---L----------PDELTLIHFVVM-----------RQNYDIMVKILGTNKELIDR  220 (580)
Q Consensus       165 ~~~~~~~v~~Ll~~~~~~~~~~~---~----------~~~~t~L~~A~~-----------~~~~~~~~~Ll~~~~~~~~~  220 (580)
                      ..|+.+++++|+++|++. +..+   .          ..+.||||.|+.           .++.++++.|++.+.+ ++.
T Consensus       147 ~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~  224 (661)
T PHA02917        147 DDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSS  224 (661)
T ss_pred             cCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-ccc
Confidence            578999999999999643 2221   1          123599999986           4588999999999876 899


Q ss_pred             cCCCCChHHHHHHHcCCh--HHHHHHHHhchhcc---cccCCCCCcHHHHHHHc---------CcHHHHHHHHHhCCCcc
Q 045393          221 LDWHQRNPLHYAAASGNV--KMAQRLLEESKRLA---YKRDCNGETPLHLAAEN---------GKLKVLKLLINKYPDAI  286 (580)
Q Consensus       221 ~d~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~---------g~~~~v~~Ll~~~~~~~  286 (580)
                      .|.+|.||||+|+..|+.  ++++.|++ |++..   ...|..|.+|+|+|+.-         .+.+++++|++.|++..
T Consensus       225 ~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~  303 (661)
T PHA02917        225 IDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHG  303 (661)
T ss_pred             CCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCc
Confidence            999999999999999985  79999975 76553   24566788999999842         27899999999997621


Q ss_pred             ------ccc------------cCCCCCHHHHHH---HcCC--HHHHHHHhcCcch-------------------------
Q 045393          287 ------EIR------------NNSDRSILHVAA---KHGN--WNIVSFILRSPEM-------------------------  318 (580)
Q Consensus       287 ------~~~------------d~~g~t~Lh~A~---~~~~--~~iv~~Ll~~~~~-------------------------  318 (580)
                            +..            +..+.+++|.+.   ..|.  .+++++|+++|++                         
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~  383 (661)
T PHA02917        304 IMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLK  383 (661)
T ss_pred             eeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHH
Confidence                  111            123445555444   3665  4599999988652                         


Q ss_pred             --hhhcccccCCCCcHHHHHHhcCC-----------------------hhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393          319 --ENLINLVDRNGNTPLHLAAMGLH-----------------------SDVVFTLSRHKSVNIRAKNHSARSNTALEIAE  373 (580)
Q Consensus       319 --~~~~n~~d~~G~T~Lh~A~~~~~-----------------------~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~  373 (580)
                        +++++.+|.+|.||||.|++.+.                       .++++.|+.+ |+|+|.+|.  .|+|||++|.
T Consensus       384 ~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~--~G~TpLh~Aa  460 (661)
T PHA02917        384 KEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDK--RGETLLHKAV  460 (661)
T ss_pred             hcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCC--CCcCHHHHHH
Confidence              23455667789999999875432                       4567888865 999999999  9999999998


Q ss_pred             HHhhCChhhHHHHHHHHHHHhhhhhhc
Q 045393          374 ITRANGKEIQKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       374 ~~~~~~~~~~~~~~~~~L~~~ga~~~~  400 (580)
                      .       ....++.+.|++.|++...
T Consensus       461 ~-------~~~~~~v~~Ll~~GAdin~  480 (661)
T PHA02917        461 R-------YNKQSLVSLLLESGSDVNI  480 (661)
T ss_pred             H-------cCCHHHHHHHHHCcCCCCC
Confidence            7       4466888999999988543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=9.2e-41  Score=355.87  Aligned_cols=366  Identities=28%  Similarity=0.334  Sum_probs=248.7

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      ++|.|+..|+++++++++..+...+..+-.|.||+|.|+..+..|++++|+++|.+         +..++....||+|.|
T Consensus       245 ~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~---------~~~~~~~~kt~l~~a  315 (1143)
T KOG4177|consen  245 PLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGAD---------VLAKARDDQTPLHIA  315 (1143)
T ss_pred             HHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcc---------cccccccccChhhhh
Confidence            45555555555555555555555554555555555555555555555555555555         444444555555555


Q ss_pred             HHhCCHHHHHHHHhcCcccccCCCcch-----------hh---------hhhhccCCCCCcHHHHHHHcCcHHHHHHHHH
Q 045393           84 ARIGDRAIVSEIMKYLPAVNQVGPAPV-----------LE---------SLFRMTDIEGNTPLHNAVTNQHKRVIRILVE  143 (580)
Q Consensus        84 a~~g~~~~v~~Ll~~~~~~~~~~~~~~-----------~~---------~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  143 (580)
                      .+.|+.++++.+++.++.++.......           ..         .--...++.|.||+|.|+.+|..+++++++.
T Consensus       316 ~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~  395 (1143)
T KOG4177|consen  316 SRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLE  395 (1143)
T ss_pred             cccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhh
Confidence            555555555555554443322111000           00         0001233455556666666666666666666


Q ss_pred             cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC-CHHHHHHHHhhCCccccccC
Q 045393          144 KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ-NYDIMVKILGTNKELIDRLD  222 (580)
Q Consensus       144 ~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~d  222 (580)
                      +|.+++ ..+..|.||+|.|+..++.++++.+++.+. +.+..+. .|+|++|.|+..+ ..+....+++.+ ..++...
T Consensus       396 ~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA-~~~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g-~~~n~~s  471 (1143)
T KOG4177|consen  396 AGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGA-SPNAKAK-LGYTPLHVAAKKGRYLQIARLLLQYG-ADPNAVS  471 (1143)
T ss_pred             ccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCC-ChhhHhh-cCCChhhhhhhcccHhhhhhhHhhcC-CCcchhc
Confidence            665543 455556666666666666666666666553 3333344 6677777777777 444444444443 4477777


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      ..|.||||.|+..|+.++++.+++.++.. +...+.+.+++|.|...+...+++.++++|++ ++.++..|.||||.||.
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~  549 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVH  549 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHh
Confidence            78888888888888888888888777544 45556778888888888888888888888888 88999999999999999


Q ss_pred             cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhh
Q 045393          303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEI  382 (580)
Q Consensus       303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~  382 (580)
                      +|+.++|++|+++   +++++.+|+.|+||||.|+..|+.+++++|+++ |+++|..+.  +|.|||++|..       .
T Consensus       550 ~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~--~g~TpL~iA~~-------l  616 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH-GASVNAADL--DGFTPLHIAVR-------L  616 (1143)
T ss_pred             cCCchHHHHhhhC---CccccccCCCCCChhhHHHHcChHHHHHHHHHc-CCCCCcccc--cCcchhHHHHH-------h
Confidence            9999999999999   556999999999999999999999999999976 999999999  99999999998       5


Q ss_pred             HHHHHHHHHHHhhhh
Q 045393          383 QKHLTLKALKTAYAK  397 (580)
Q Consensus       383 ~~~~~~~~L~~~ga~  397 (580)
                      .+..+.+.|+..++.
T Consensus       617 g~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  617 GYLSVVKLLKVVTAT  631 (1143)
T ss_pred             cccchhhHHHhccCc
Confidence            667778888888777

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=341.21  Aligned_cols=286  Identities=24%  Similarity=0.311  Sum_probs=212.0

Q ss_pred             cCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH-----HHH
Q 045393           11 HGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI-----AAR   85 (580)
Q Consensus        11 ~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~-----Aa~   85 (580)
                      ....+.++++++.++.....+..+.||||.|+..|+.++|++|+++|++         ++..+..+.||||.     |+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~---------~~~~~~~~~t~L~~~~~~~a~~   82 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD---------INSSTKNNSTPLHYLSNIKYNL   82 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC---------CCCccccCcCHHHHHHHHHHHh
Confidence            3445677777777766666777788888888888888888888888877         67777778888888     888


Q ss_pred             hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH
Q 045393           86 IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV--TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (580)
Q Consensus        86 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  163 (580)
                      .|+.++++.|+++|++++             ..|..|.||||+|+  ..|+.+++++|+++|++.+ ..+..|.||||.|
T Consensus        83 ~~~~~iv~~Ll~~ga~i~-------------~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A  148 (480)
T PHA03100         83 TDVKEIVKLLLEYGANVN-------------APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLY  148 (480)
T ss_pred             hchHHHHHHHHHCCCCCC-------------CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence            888888888888887764             36777888888888  8888888888888887665 3566667777777


Q ss_pred             HHcC--cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHH
Q 045393          164 IDAR--LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA  241 (580)
Q Consensus       164 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  241 (580)
                      +..+  +.+++++|++++.                                   + ++..+..|.||||+|+..|+.+++
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~-----------------------------------d-in~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGV-----------------------------------D-INAKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             HHcCCChHHHHHHHHHCCC-----------------------------------C-cccccCCCCCHHHHHHHhCCHHHH
Confidence            7666  6666666666653                                   2 344444556666666666666666


Q ss_pred             HHHHHhchhcccccCCCC------CcHHHHHHHcCc--HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393          242 QRLLEESKRLAYKRDCNG------ETPLHLAAENGK--LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL  313 (580)
Q Consensus       242 ~~Ll~~~~~~~~~~~~~g------~tpL~~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  313 (580)
                      ++|+++|+++ +..+..|      .||||.|+..|+  .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus       193 ~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        193 KFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             HHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666666555 3344444      788888888888  8888888888887 7888888888888888888888888888


Q ss_pred             cCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccc
Q 045393          314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH  361 (580)
Q Consensus       314 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~  361 (580)
                      +.|+   ++|.+|..|.||||+|+..++.++++.|+++ |++++..+.
T Consensus       271 ~~ga---d~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~~  314 (480)
T PHA03100        271 DLGA---NPNLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTIIE  314 (480)
T ss_pred             HcCC---CCCccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHHH
Confidence            8744   5788888888888888888888888888865 677776543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-38  Score=331.17  Aligned_cols=328  Identities=19%  Similarity=0.213  Sum_probs=257.8

Q ss_pred             HHHHHHHcCCHHHHHHHhhh----cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcH
Q 045393            4 ELLEVLRHGDEYKIKQLALR----QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETA   79 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~----~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tp   79 (580)
                      .|+.++...+.+-+...++.    +.........+.||||+|+..|+.++|++|+++|++         ++.+|..|.||
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad---------vn~~d~~g~Tp   73 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN---------VNQPDHRDLTP   73 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCCH
Confidence            57888888887556655554    122233445688999999999999999999999998         88999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCH
Q 045393           80 LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP  159 (580)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tp  159 (580)
                      ||+||..|+.++++.|++.+.+..               ...+.+|++.|+..++.+++++|+..+.+.....+.   ..
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~~~~~~---------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~---~~  135 (477)
T PHA02878         74 LHIICKEPNKLGMKEMIRSINKCS---------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL---VY  135 (477)
T ss_pred             HHHHHHCccHhHHHHHHHHHhccc---------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcH---HH
Confidence            999999999999999999875532               246789999999999999999999876533211110   11


Q ss_pred             HHHHHHc--CcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393          160 LSIAIDA--RLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (580)
Q Consensus       160 L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~  237 (580)
                      +......  ...+++++|++++. +++..+...|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||.|+..|+
T Consensus       136 ~~~~~~~~~~~~~iv~~Ll~~ga-din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~  213 (477)
T PHA02878        136 IDKKSKDDIIEAEITKLLLSYGA-DINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYN  213 (477)
T ss_pred             HhhccchhhHHHHHHHHHHHcCC-CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCC
Confidence            1111111  23469999999985 45555552399999999999999999999998866 78889999999999999999


Q ss_pred             hHHHHHHHHhchhcccccCCCCCcHHHHHHHc-CcHHHHHHHHHhCCCccccccC-CCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAEN-GKLKVLKLLINKYPDAIEIRNN-SDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      .++++.|++.|+++ +.+|..|.||||+|+.. ++.+++++|+++|++ ++.++. .|+||||+|  .++.+++++|+++
T Consensus       214 ~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~  289 (477)
T PHA02878        214 KPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEY  289 (477)
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHC
Confidence            99999999999887 67888999999999975 689999999999999 777765 799999999  5778999999998


Q ss_pred             cchhhhcccccCCCCcHHHHHHhcC-ChhHHHHhhcC----cccccccccccCCCCCHH
Q 045393          316 PEMENLINLVDRNGNTPLHLAAMGL-HSDVVFTLSRH----KSVNIRAKNHSARSNTAL  369 (580)
Q Consensus       316 ~~~~~~~n~~d~~G~T~Lh~A~~~~-~~~~~~~Ll~~----~~~d~~~~n~~~~g~t~l  369 (580)
                         ++++|.+|.+|+||||+|+..+ ..++.+.|+.+    .+.+++.++.  .|.++-
T Consensus       290 ---gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~--~g~~~n  343 (477)
T PHA02878        290 ---GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNS--EGFIDN  343 (477)
T ss_pred             ---CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCc--HHHHHH
Confidence               4558999999999999999754 45666666543    3456666766  665543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-38  Score=325.95  Aligned_cols=274  Identities=20%  Similarity=0.227  Sum_probs=234.6

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393           70 RQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus        70 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      +..+..+.||||.|++.|+.++|++|+++|++++             .+|..|.||||+|+..|+.++++.|++.+....
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn-------------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~   97 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN-------------QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS   97 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc
Confidence            4456678999999999999999999999999876             478899999999999999999999999876544


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC--CHHHHHHHHhhCCccccccCCC-CC
Q 045393          150 SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ--NYDIMVKILGTNKELIDRLDWH-QR  226 (580)
Q Consensus       150 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~-g~  226 (580)
                      .   ..+.+|++.|+..++.++++.|+..+.......    ....+......+  +.++++.|++.+.+ ++..+.. |.
T Consensus        98 ~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~  169 (477)
T PHA02878         98 V---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI----DLVYIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGN  169 (477)
T ss_pred             c---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC----cHHHHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCC
Confidence            2   567899999999999999999998753221111    111111111112  34589999998876 8888888 99


Q ss_pred             hHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc-CC
Q 045393          227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH-GN  305 (580)
Q Consensus       227 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~  305 (580)
                      ||||+|+..|+.+++++|++.|+++ +.+|..|.||||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.. ++
T Consensus       170 tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~  247 (477)
T PHA02878        170 TALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKD  247 (477)
T ss_pred             CHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCC
Confidence            9999999999999999999999987 77899999999999999999999999999999 899999999999999976 78


Q ss_pred             HHHHHHHhcCcchhhhcccccC-CCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          306 WNIVSFILRSPEMENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       306 ~~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      .+++++|+++|   +++|.++. .|.||||+|  .++.+++++|++. |+|+|.+|.  .|.|||++|..
T Consensus       248 ~~iv~~Ll~~g---advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~--~g~TpL~~A~~  309 (477)
T PHA02878        248 YDILKLLLEHG---VDVNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNS--YKLTPLSSAVK  309 (477)
T ss_pred             HHHHHHHHHcC---CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH
Confidence            99999999994   45898886 899999999  5678999999965 999999999  99999999987

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=7.8e-40  Score=348.81  Aligned_cols=369  Identities=21%  Similarity=0.245  Sum_probs=228.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      +++|.|+..+.+++++.++.+|......|..|-||||.|+..|+.+++.+++.+|+.         .+..+..|+||+|.
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~---------~~~~~vr~~tplh~  281 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS---------VNVSTVRGETPLHM  281 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc---------cCcccccccCcchh
Confidence            467888888888888888888877777888888888888888888888888888887         77888888888888


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchh--------------------hhhhhccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVL--------------------ESLFRMTDIEGNTPLHNAVTNQHKRVIRILV  142 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------------------~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll  142 (580)
                      ||+.+..+++++|+++|+++........-                    .......+..|.||||++++.++.++..+|.
T Consensus       282 AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~  361 (1143)
T KOG4177|consen  282 AARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALL  361 (1143)
T ss_pred             hhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhh
Confidence            88888888888888888776532111000                    0001222333444444444444444333333


Q ss_pred             HcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccC
Q 045393          143 EKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLD  222 (580)
Q Consensus       143 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d  222 (580)
                      +.++... ..+..+.+|+|.|+..|..+.++.++..+.. ++..+. .|.||+|.++..++..+++.+++.+.. .+..+
T Consensus       362 ~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk-~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~  437 (1143)
T KOG4177|consen  362 EHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGK-NGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKA  437 (1143)
T ss_pred             ccccccC-cccccCCcchhhhcccCchhHHHhhhhccCC-cccCCC-CCcceeeehhhccCcceEEEEeccCCC-hhhHh
Confidence            3333222 2333444444444444444444444444422 232322 444444444444444444444443333 44444


Q ss_pred             CCCChHHHHHHHcC-ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHH
Q 045393          223 WHQRNPLHYAAASG-NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAA  301 (580)
Q Consensus       223 ~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  301 (580)
                      ..|.||+|.|+..| ..+....+++.+.++ +.....|.||||.|+..|+.++++.+++.++. .+...+.|-+++|.|.
T Consensus       438 ~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  438 KLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             hcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhh
Confidence            44444444444444 344444444444443 33344444444444444444444444444433 3334444444444444


Q ss_pred             HcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChh
Q 045393          302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKE  381 (580)
Q Consensus       302 ~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~  381 (580)
                      ..+...+.+.++++   +..++.++..|+||||.|+.+|+.++|++|+++ |+|++++++  .|+||||.|+.       
T Consensus       516 ~~~~v~~~~~l~~~---ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~--~G~TPLH~Aa~-------  582 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEH---GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDK--LGYTPLHQAAQ-------  582 (1143)
T ss_pred             hhhhHHHHHHHhhc---CCceehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCC--CCCChhhHHHH-------
Confidence            44444555555544   445888999999999999999999999999976 999999998  99999999998       


Q ss_pred             hHHHHHHHHHHHhhhhhh
Q 045393          382 IQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       382 ~~~~~~~~~L~~~ga~~~  399 (580)
                      ....++.++|.+.||...
T Consensus       583 ~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  583 QGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             cChHHHHHHHHHcCCCCC
Confidence            457789999999999854

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-38  Score=329.36  Aligned_cols=282  Identities=23%  Similarity=0.296  Sum_probs=237.0

Q ss_pred             CCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCc
Q 045393           45 RNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNT  124 (580)
Q Consensus        45 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~t  124 (580)
                      ...++++++++.+..         .+..+..+.||||.|++.|+.++++.|+++|++++             ..+..|.|
T Consensus        13 ~~~~~~~~~~~~~~~---------~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-------------~~~~~~~t   70 (480)
T PHA03100         13 IKVKNIKYIIMEDDL---------NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-------------SSTKNNST   70 (480)
T ss_pred             HHHHHHHHHHhcCcc---------chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-------------CccccCcC
Confidence            345677777766533         56677788888888888888888888888887765             35667888


Q ss_pred             HHHH-----HHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHH--HcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHH
Q 045393          125 PLHN-----AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI--DARLNDIACFIIDKSPESLNTTRLPDELTLIHF  197 (580)
Q Consensus       125 pL~~-----A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  197 (580)
                      |||+     |+..++.+++++|+++|++++ ..+..|.||||+|+  ..|+.+++++|++++.                 
T Consensus        71 ~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-----------------  132 (480)
T PHA03100         71 PLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGA-----------------  132 (480)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCC-----------------
Confidence            8888     888888888888888888773 56666777777777  6666666666666552                 


Q ss_pred             HHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcC--ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393          198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL  275 (580)
Q Consensus       198 A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  275 (580)
                                        + ++..+..|.||||+|+..|  +.+++++|+++|+++ +.++..|.||||+|+..|+.+++
T Consensus       133 ------------------~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        133 ------------------N-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             ------------------C-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHH
Confidence                              2 4556778899999999999  999999999999987 67788999999999999999999


Q ss_pred             HHHHHhCCCccccccCCC------CCHHHHHHHcCC--HHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393          276 KLLINKYPDAIEIRNNSD------RSILHVAAKHGN--WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  347 (580)
                      ++|+++|++ ++..+..|      .||||.|+..++  .+++++|++.|   .++|.+|..|.||||+|+..|+.+++++
T Consensus       193 ~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g---~din~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        193 KFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG---VPINIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999 78888888      999999999999  99999999994   4599999999999999999999999999


Q ss_pred             hhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhhc
Q 045393          348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       348 Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  400 (580)
                      |++. |+|+|.+|.  .|.||+++|..       ....++++.|++.|++...
T Consensus       269 Ll~~-gad~n~~d~--~g~tpl~~A~~-------~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        269 LLDL-GANPNLVNK--YGDTPLHIAIL-------NNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHHc-CCCCCccCC--CCCcHHHHHHH-------hCCHHHHHHHHhcCCCHHH
Confidence            9965 889999999  99999999998       4567899999999986543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=312.66  Aligned_cols=276  Identities=17%  Similarity=0.229  Sum_probs=171.1

Q ss_pred             HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhc--CCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhC
Q 045393           10 RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRF--RNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIG   87 (580)
Q Consensus        10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g   87 (580)
                      ...+.++++.|++.|...+.. .+|.||||.++..  ++.++|+.|+++|++         ++.++ .+.||||.|+.++
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd---------vn~~~-~~~tpL~~a~~~~   80 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD---------VNYKG-YIETPLCAVLRNR   80 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC---------ccCCC-CCCCcHHHHHhcc
Confidence            357888888888888665545 5688888765543  368888888888888         66555 5688888887654


Q ss_pred             ------CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCcccccCCCC
Q 045393           88 ------DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN---QHKRVIRILVEKDSVPSSYINKAYQT  158 (580)
Q Consensus        88 ------~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t  158 (580)
                            +.++++.|+++|++++             .+|..|.||||.|+..   ++.+++++|+++|++++...+..|.|
T Consensus        81 ~~~~~~~~~iv~~Ll~~Gadin-------------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         81 EITSNKIKKIVKLLLKFGADIN-------------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CcchhhHHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence                  4678888888888866             4677888888887765   56888888888888874467788888


Q ss_pred             HHHHHHHc--CcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC----CHHHHHHHHhhCCccccccCCCCChHHHHH
Q 045393          159 PLSIAIDA--RLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ----NYDIMVKILGTNKELIDRLDWHQRNPLHYA  232 (580)
Q Consensus       159 pL~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~----~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A  232 (580)
                      |||+|+..  ++.+++++|+++|.+.....+. .|.||||.|+..+    +.++++.|++.+.+ ++..+..|.|+||.+
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~-~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~  225 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSL-YGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESF  225 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccc-cCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHH
Confidence            88887654  5678888888877533221222 5666666665443    55555555555544 455555555555544


Q ss_pred             HHcC------ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCH
Q 045393          233 AASG------NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW  306 (580)
Q Consensus       233 ~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  306 (580)
                      +..+      ..+++++|+. ++++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.
T Consensus       226 ~~~~~~~~~~~~~il~~l~~-~adv-n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~  302 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILK-YIKI-NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNI  302 (494)
T ss_pred             HHhchhhcccchHHHHHHHh-CCCC-CCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCH
Confidence            4322      2333443332 2333 34444444444444444444444444444444 444444444444444444444


Q ss_pred             HHHHHHhc
Q 045393          307 NIVSFILR  314 (580)
Q Consensus       307 ~iv~~Ll~  314 (580)
                      ++++.|++
T Consensus       303 ~iv~~LL~  310 (494)
T PHA02989        303 DMLNRILQ  310 (494)
T ss_pred             HHHHHHHh
Confidence            44444444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=310.20  Aligned_cols=275  Identities=16%  Similarity=0.216  Sum_probs=235.6

Q ss_pred             cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHh--CCHHHHHHHHhcCcccccCCCcchhhhhhhccCCC
Q 045393           44 FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARI--GDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIE  121 (580)
Q Consensus        44 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~  121 (580)
                      ..+.++|++|+++|++         ++.+ ..|.||||.++..  ++.++|+.|+++|++++.             ++ .
T Consensus        13 ~~~~~~v~~LL~~Gad---------vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~-------------~~-~   68 (494)
T PHA02989         13 TVDKNALEFLLRTGFD---------VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY-------------KG-Y   68 (494)
T ss_pred             cCcHHHHHHHHHcCCC---------cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC-------------CC-C
Confidence            5789999999999998         7777 5799999876654  378999999999999873             33 5


Q ss_pred             CCcHHHHHHHcC------cHHHHHHHHHcCCCCCcccccCCCCHHHHHHHc---CcHHHHHHHHhcCCCCcCCCCCCCCc
Q 045393          122 GNTPLHNAVTNQ------HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA---RLNDIACFIIDKSPESLNTTRLPDEL  192 (580)
Q Consensus       122 g~tpL~~A~~~~------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~  192 (580)
                      +.||||.|+.++      +.+++++|+++|++++ ..+..|.||||.|+..   ++.+++++|+++|.+..+..+. .|.
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~  146 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGY  146 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCC
Confidence            789999998754      5789999999999987 5788999999988765   6789999999999643255555 899


Q ss_pred             cHHHHHHHc--CCHHHHHHHHhhCCccccc-cCCCCChHHHHHHHcC----ChHHHHHHHHhchhcccccCCCCCcHHHH
Q 045393          193 TLIHFVVMR--QNYDIMVKILGTNKELIDR-LDWHQRNPLHYAAASG----NVKMAQRLLEESKRLAYKRDCNGETPLHL  265 (580)
Q Consensus       193 t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~-~d~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  265 (580)
                      ||||.|+..  ++.++++.|++.+.+ ++. .+..|.||||.|+..+    +.+++++|+++|+++ +.++..+.||||.
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~  224 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLES  224 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHH
Confidence            999998764  689999999999877 555 6789999999998764    899999999999988 6677789999998


Q ss_pred             HHHc------CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhc
Q 045393          266 AAEN------GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG  339 (580)
Q Consensus       266 A~~~------g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~  339 (580)
                      ++..      +..+++++|++ +++ ++.+|..|+||||+|+..|+.+++++|++.|   +++|.+|..|+||||+|+..
T Consensus       225 ~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G---adin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        225 FLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLG---DDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             HHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHc
Confidence            7754      35678887665 677 8999999999999999999999999999994   55999999999999999999


Q ss_pred             CChhHHHHhhcC
Q 045393          340 LHSDVVFTLSRH  351 (580)
Q Consensus       340 ~~~~~~~~Ll~~  351 (580)
                      ++.++++.|++.
T Consensus       300 ~~~~iv~~LL~~  311 (494)
T PHA02989        300 GNIDMLNRILQL  311 (494)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-35  Score=279.28  Aligned_cols=232  Identities=13%  Similarity=0.110  Sum_probs=198.7

Q ss_pred             hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHH
Q 045393           86 IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID  165 (580)
Q Consensus        86 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  165 (580)
                      .++.+++++|+++|++               .+|.+|.||||+|+..|+.+++++|++.|++.+.   .++.||||+|+.
T Consensus         9 ~~~~~~~~~Lis~~a~---------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~   70 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAAT   70 (284)
T ss_pred             cCHHHHHHHHHhCCCC---------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHH
Confidence            4678999999998875               3788999999999999999999999999987753   246899999999


Q ss_pred             cCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCC-ChHHHHHHHcCChHHHHHH
Q 045393          166 ARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-RNPLHYAAASGNVKMAQRL  244 (580)
Q Consensus       166 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~g~~~~v~~L  244 (580)
                      .|+.+++++|++++. +.+..+. .|.||||.|+..|+.++++.|++.+.+ ++..+..| .||||+|+..|+.+++++|
T Consensus        71 ~g~~eiV~lLL~~Ga-dvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~L  147 (284)
T PHA02791         71 LEDTKIVKILLFSGM-DDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYF  147 (284)
T ss_pred             CCCHHHHHHHHHCCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHH
Confidence            999999999999884 4455555 899999999999999999999998876 67777777 4899999999999999999


Q ss_pred             HHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH-HHHHHHcCCHHHHHHHhcCcchhhhcc
Q 045393          245 LEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-LHVAAKHGNWNIVSFILRSPEMENLIN  323 (580)
Q Consensus       245 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~n  323 (580)
                      ++++++...  ...|.||||+|+..|+.+++++|+++|++ ++.+|..|.|| ||+|+.+|+.+++++|+++   ++++|
T Consensus       148 L~~~~~~~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~---Ga~in  221 (284)
T PHA02791        148 LSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKY---DINIY  221 (284)
T ss_pred             HhcCCcccc--cccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHC---CCCCc
Confidence            998754321  13589999999999999999999999998 88899999977 9999999999999999998   45589


Q ss_pred             cccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          324 LVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       324 ~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      .+|..| |+|      ++.|++++||++
T Consensus       222 ~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        222 SVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             cCcccC-ccC------CCHHHHHHHHHh
Confidence            998854 666      777999999975

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-35  Score=279.37  Aligned_cols=231  Identities=20%  Similarity=0.184  Sum_probs=139.8

Q ss_pred             CCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHH
Q 045393           12 GDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAI   91 (580)
Q Consensus        12 g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~   91 (580)
                      ++.++++.|++.+.  ...|.+|.||||+|+..|+.++++.|++.|++         ++.+  +|+||||+|+..|+.++
T Consensus        10 ~~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~---------~n~~--d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791         10 KSKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGAL---------KNLL--ENEFPLHQAATLEDTKI   76 (284)
T ss_pred             CHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC---------CcCC--CCCCHHHHHHHCCCHHH
Confidence            45555555555433  12455556666666666666666666655554         2222  24566666666666666


Q ss_pred             HHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCC-CCHHHHHHHcCcHH
Q 045393           92 VSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDARLND  170 (580)
Q Consensus        92 v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~  170 (580)
                      ++.|++.|++++             .+|..|.||||+|+..|+.+++++|+++|++.+. .+..| .||||+|+..|+.+
T Consensus        77 V~lLL~~Gadvn-------------~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         77 VKILLFSGMDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHcCCHH
Confidence            666665555543             2455556666666666666666666655555442 23333 34555555555555


Q ss_pred             HHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchh
Q 045393          171 IACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR  250 (580)
Q Consensus       171 ~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  250 (580)
                      ++++|+++                                   ++...+.  ..|.||||+|+..|+.++++.|+++|++
T Consensus       143 ivk~LL~~-----------------------------------~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd  185 (284)
T PHA02791        143 IVSYFLSE-----------------------------------IPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS  185 (284)
T ss_pred             HHHHHHhc-----------------------------------CCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCC
Confidence            55555544                                   3221110  2367888888888888888888888877


Q ss_pred             cccccCCCCCcH-HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          251 LAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       251 ~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      + +.++..|.|| ||+|+..|+.+++++|+++|++ ++.+|..| ++|      ++.|++++|+++
T Consensus       186 ~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        186 T-NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             C-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHh
Confidence            6 5667777765 8888888888888888888888 67777744 555      777888888876

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=297.59  Aligned_cols=245  Identities=18%  Similarity=0.209  Sum_probs=220.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHc
Q 045393          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMR  201 (580)
Q Consensus       122 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~  201 (580)
                      .+++||.|++.|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++.. ++.... .+.+|||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~-~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYP-DIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCC-CcccHHHHHHHC
Confidence            5789999999999999999999999887 4677899999999999999999999999853 444434 789999999999


Q ss_pred             CCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHh
Q 045393          202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK  281 (580)
Q Consensus       202 ~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  281 (580)
                      |+.+.++.|++.+....+..+.+|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999988766677888999999999999999999999999988 77888999999999999999999999999


Q ss_pred             CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCC-cHHHHHHhcCChhHHHHhhcCccccccccc
Q 045393          282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGN-TPLHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       282 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      +++ ++.+|..|+||||+|+..|+.+++++|+++|.   +++..+..|. ||+|+|+..++.+++++|+++ |+|+|..+
T Consensus       158 g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga---~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~  232 (413)
T PHA02875        158 KAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA---NIDYFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMF  232 (413)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHh
Confidence            998 89999999999999999999999999999954   4888888875 899999999999999999965 99999763


Q ss_pred             c-cCCCCCHHHHHHHH
Q 045393          361 H-SARSNTALEIAEIT  375 (580)
Q Consensus       361 ~-~~~g~t~l~~a~~~  375 (580)
                      . ..++.||++++...
T Consensus       233 ~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        233 MIEGEECTILDMICNM  248 (413)
T ss_pred             hcCCCchHHHHHHHhh
Confidence            2 22799999988753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=298.44  Aligned_cols=256  Identities=20%  Similarity=0.286  Sum_probs=225.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccC
Q 045393           76 DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA  155 (580)
Q Consensus        76 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  155 (580)
                      .+++||.|++.|+.+++++|+++|++++             .++..|.||||+|+..|+.+++++|+++|+++. ..+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~   67 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-------------FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPD   67 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-------------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCC
Confidence            5799999999999999999999999876             467789999999999999999999999999776 45678


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393          156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (580)
Q Consensus       156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  235 (580)
                      +.||||.|+..|+.+++++|++.+.......+. .|.||||.|+..|+.++++.|++.+.+ ++.++..|.||||+|+..
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYK-DGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccccccC-CCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHc
Confidence            899999999999999999999998655444444 799999999999999999999999876 888999999999999999


Q ss_pred             CChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCC-CCHHHHHHHcCCHHHHHHHhc
Q 045393          236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD-RSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       236 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      |+.+++++|+++|++. +.+|..|.||||+|+..|+.+++++|+++|++ ++..+..| .||+|+|+..|+.+++++|++
T Consensus       146 ~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        146 GDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             CCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999987 77899999999999999999999999999999 77788777 589999999999999999999


Q ss_pred             CcchhhhcccccCCCCcHHHHHHhcC---ChhHHHHhh
Q 045393          315 SPEMENLINLVDRNGNTPLHLAAMGL---HSDVVFTLS  349 (580)
Q Consensus       315 ~~~~~~~~n~~d~~G~T~Lh~A~~~~---~~~~~~~Ll  349 (580)
                      +|.+....+..+..|.|||+.+....   ..+.++.++
T Consensus       224 ~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        224 RGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             CCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            97664444456888999999876532   344454444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.4e-35  Score=275.64  Aligned_cols=223  Identities=22%  Similarity=0.296  Sum_probs=188.3

Q ss_pred             HHHHHHcCCHHHHHHHhhhcC---c--ccccCCCCCchhhHHHhcCCHHHHHHHHhhC-chhHHhhhhhhcccccCCCCc
Q 045393            5 LLEVLRHGDEYKIKQLALRQD---I--FSTSSPGGNAVLHMAVRFRNQQVIREILRQQ-DFIALRLHYSLLRQKNLMDET   78 (580)
Q Consensus         5 L~~A~~~g~~~~~~~ll~~~~---~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~g~t   78 (580)
                      .+.|++.|++..++.|+.+..   +  ......+|.|||-.||++||.++|++|+++. ++++....- -.+-.+..|-+
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV-~FDge~Iegap   86 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSV-RFDGETIEGAP   86 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceE-EeCCcccCCCc
Confidence            348999999999999987632   1  2225678999999999999999999999954 332111110 12334567889


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCC
Q 045393           79 ALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQT  158 (580)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  158 (580)
                      ||..|+..||.++|+.|+++|+++|.             ......|||-.||..|+.++||+|+++|+++. ..|..|.|
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~VN~-------------tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhT  152 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASVND-------------TTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHT  152 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCcccc-------------ccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCe
Confidence            99999999999999999999999874             44566799999999999999999999999997 78999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCh
Q 045393          159 PLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV  238 (580)
Q Consensus       159 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~  238 (580)
                      .||+|+.+|+.+++++|++.+ .+++.++. .|.|+||.++..|+.++++.|+.++..  -.+|..|.|||..|+..|+.
T Consensus       153 cLmIa~ykGh~~I~qyLle~g-ADvn~ks~-kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  153 CLMIACYKGHVDIAQYLLEQG-ADVNAKSY-KGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             eEEeeeccCchHHHHHHHHhC-CCcchhcc-cCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcch
Confidence            999999999999999999999 45666666 999999999999999999999999875  34577799999999999999


Q ss_pred             HHHHHHHH
Q 045393          239 KMAQRLLE  246 (580)
Q Consensus       239 ~~v~~Ll~  246 (580)
                      ++|++|++
T Consensus       229 ~iVe~L~~  236 (615)
T KOG0508|consen  229 DIVERLLQ  236 (615)
T ss_pred             HHHHHHhc
Confidence            99999994

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-35  Score=244.35  Aligned_cols=208  Identities=27%  Similarity=0.341  Sum_probs=171.1

Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393          158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (580)
Q Consensus       158 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~  237 (580)
                      ++.+.++......-++.+++..+.+++..+..+|+||||.|+..|+.+++.+|+......++..|..|+||||.|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            44555555555555666666655555555544677777777777777777777765555577788899999999999999


Q ss_pred             hHHHHHHHHh-chhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393          238 VKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP  316 (580)
Q Consensus       238 ~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  316 (580)
                      .++|+.|+.+ ++++ +..++.|.||||+|+.+|+.+++++|+++|+. ++.+|..|+||||-|+.-|+.+++++|+..+
T Consensus        85 ~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   85 DEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             HHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            9999999998 6766 78888999999999999999999999999977 8999999999999999999999999999985


Q ss_pred             chhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       317 ~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +   -+|.+|..|+||||.|...|+.++...|.+. |+|.+..|+  +| ||+.++..
T Consensus       163 a---~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edk--e~-t~~~~a~~  213 (226)
T KOG4412|consen  163 A---PLNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDK--EG-TALRIACN  213 (226)
T ss_pred             C---CCCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccc--cC-chHHHHHH
Confidence            4   4999999999999999888899988888865 799999999  88 99888875

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=295.65  Aligned_cols=296  Identities=15%  Similarity=0.167  Sum_probs=188.7

Q ss_pred             HHHHHHHc---CCHHHHHHHhhhcCcccccCCCCCchhhHHHh--cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCc
Q 045393            4 ELLEVLRH---GDEYKIKQLALRQDIFSTSSPGGNAVLHMAVR--FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDET   78 (580)
Q Consensus         4 ~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (580)
                      +||.-+..   =+.+.++.|+..++....  ..+.|+++.+..  .++.++|++|+++|++         ++.+|..|.|
T Consensus         5 ~l~~y~~~~~~~~~~~v~~ll~~~~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad---------vn~~d~~g~T   73 (489)
T PHA02798          5 NLYNYITFSDNVKLSTVKLLIKSCNPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGAN---------VNGLDNEYST   73 (489)
T ss_pred             hhHHHeeecCcccHHHHHHHHhcCChhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCC---------CCCCCCCCCC
Confidence            44444443   357789999976544432  456777764443  4478999999999988         8888899999


Q ss_pred             HHHHHHHh-----CCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcC---cHHHHHHHHHcCCCCCc
Q 045393           79 ALHIAARI-----GDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ---HKRVIRILVEKDSVPSS  150 (580)
Q Consensus        79 pLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~~~~~~~  150 (580)
                      |||.|+.+     ++.++++.|+++|++++             .+|..|.||||+|+.++   +.+++++|+++|++++ 
T Consensus        74 pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-------------~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-  139 (489)
T PHA02798         74 PLCTILSNIKDYKHMLDIVKILIENGADIN-------------KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-  139 (489)
T ss_pred             hHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-------------CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-
Confidence            99988764     66899999999998876             47888999999999875   6889999999998876 


Q ss_pred             ccccCCCCHHHHHHHcCc---HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHc----CCHHHHHHHHhhCCccccccCC
Q 045393          151 YINKAYQTPLSIAIDARL---NDIACFIIDKSPESLNTTRLPDELTLIHFVVMR----QNYDIMVKILGTNKELIDRLDW  223 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~----~~~~~~~~Ll~~~~~~~~~~d~  223 (580)
                      ..|..|.||||+|+..++   .+++++|++.+.+ ++..+...|.||||.++..    ++.++++.|++++.. ++..+.
T Consensus       140 ~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~  217 (489)
T PHA02798        140 LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENK  217 (489)
T ss_pred             ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCc
Confidence            578888888888888877   7888888887743 3333222455666655432    244455555544433 344444


Q ss_pred             CCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc
Q 045393          224 HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH  303 (580)
Q Consensus       224 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  303 (580)
                      .|.++++....                           .+..+...++.+++++|+. +++ ++.+|..|+||||+|+.+
T Consensus       218 ~~~~~~~~~l~---------------------------~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~  268 (489)
T PHA02798        218 SHKKKFMEYLN---------------------------SLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSH  268 (489)
T ss_pred             cccchHHHHHH---------------------------HHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHc
Confidence            44444331000                           0001223344555555443 344 556666666666666666


Q ss_pred             CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccc
Q 045393          304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK  359 (580)
Q Consensus       304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~  359 (580)
                      |+.+++++|++.   ++++|.+|..|+||||+|+..++.++++.|++. +++++..
T Consensus       269 ~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i  320 (489)
T PHA02798        269 NNRKIFEYLLQL---GGDINIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTI  320 (489)
T ss_pred             CcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHH
Confidence            666666666665   333566666666666666666666666665533 5555543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-34  Score=238.12  Aligned_cols=211  Identities=24%  Similarity=0.309  Sum_probs=191.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCC-CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHH
Q 045393          121 EGNTPLHNAVTNQHKRVIRILVEKDS-VPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVV  199 (580)
Q Consensus       121 ~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~  199 (580)
                      .+.++.+.++......-++.+++..+ .++...|.+|+||||+||+.|+.+++.+|++.....++.++. .|+||||+|+
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhh
Confidence            35678888888888888899998887 556566679999999999999999999999866566666666 9999999999


Q ss_pred             HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (580)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  279 (580)
                      ..|+.++++.|+.+.+.+++..+..|.|+||+|+..|..+++++|+++|+.+ ..+|..|.||||.|+..|..+++++|+
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHH
Confidence            9999999999999966679999999999999999999999999999999877 889999999999999999999999999


Q ss_pred             HhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHh
Q 045393          280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM  338 (580)
Q Consensus       280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  338 (580)
                      ..++. ++..|+.|+||||.|...|+.++..+|++.+   +++...|+.| ||+..|.-
T Consensus       160 ~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g---Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG---ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhc---cceeeccccC-chHHHHHH
Confidence            99988 9999999999999998889999999999995   5589999988 99887764

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.5e-33  Score=281.23  Aligned_cols=362  Identities=14%  Similarity=0.082  Sum_probs=272.5

Q ss_pred             CHHHHHHHHcCCHHHH--HHHhhhcCcccccCCCCCchhhHHHhcCC-HHHHHHHHhhCchhHHhhhhhhcccccCCCCc
Q 045393            2 DQELLEVLRHGDEYKI--KQLALRQDIFSTSSPGGNAVLHMAVRFRN-QQVIREILRQQDFIALRLHYSLLRQKNLMDET   78 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~--~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (580)
                      |+-|+.+|+.=+++.+  +.|++.|...-. ..++.||||.-....+ ..-++.++..+..         .+..|.+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~n~~~~~   73 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSS---------VDYKNINDFD   73 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhC---------CCcCccCCcc
Confidence            4567888888877765  567888865553 5778899998876555 2233344444444         5668888999


Q ss_pred             HHHHHH-HhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHH-cCcHHHHHHHHHcCCCCC-------
Q 045393           79 ALHIAA-RIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT-NQHKRVIRILVEKDSVPS-------  149 (580)
Q Consensus        79 pLh~Aa-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~~~~~~-------  149 (580)
                      |+|+-+ .+|+.|+|++|+++|++++             .+++.|.||+|+|+. .++.|++++|+++|++..       
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdvN-------------~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEIN-------------SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCcc-------------cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            998654 5889999999999999987             367778999999966 699999999999998631       


Q ss_pred             ----------------------------cccccCCCCHHHHHHHcC-------cHHHHHHHHhcCCCCcCCCCCCCCccH
Q 045393          150 ----------------------------SYINKAYQTPLSIAIDAR-------LNDIACFIIDKSPESLNTTRLPDELTL  194 (580)
Q Consensus       150 ----------------------------~~~~~~g~tpL~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~t~  194 (580)
                                                  +..+..|.||||+|+.++       +.|+++.|++++. .++..+. .|.||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~-~~~~~d~-~g~t~  218 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK-EMRYYTY-REHTT  218 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC-CcCccCC-CCChH
Confidence                                        134566899999999999       8999999999995 4445555 79999


Q ss_pred             HHHHHHcC--CHHHHHHHHhhCCccc------------cc------cCC-------CCCh--------------------
Q 045393          195 IHFVVMRQ--NYDIMVKILGTNKELI------------DR------LDW-------HQRN--------------------  227 (580)
Q Consensus       195 L~~A~~~~--~~~~~~~Ll~~~~~~~------------~~------~d~-------~g~t--------------------  227 (580)
                      ||.|+.+.  +.|+++.|+...-...            ..      .|.       .|.+                    
T Consensus       219 l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~  298 (631)
T PHA02792        219 LYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSI  298 (631)
T ss_pred             HHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHH
Confidence            99999999  7888888876422100            00      010       0111                    


Q ss_pred             ----------HHHHHHHcC--ChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCC--
Q 045393          228 ----------PLHYAAASG--NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD--  293 (580)
Q Consensus       228 ----------~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g--  293 (580)
                                .||.-.+.+  +.+++++|+++|++..   ...+..+++.|+..|+.+++++|+++|++ ++.+|.+|  
T Consensus       299 ~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~  374 (631)
T PHA02792        299 LKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIIN  374 (631)
T ss_pred             HHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCC
Confidence                      122222333  5789999999998762   22356679999999999999999999999 88888775  


Q ss_pred             CCHHHHHHHcCCHH---HHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHH
Q 045393          294 RSILHVAAKHGNWN---IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALE  370 (580)
Q Consensus       294 ~t~Lh~A~~~~~~~---iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~  370 (580)
                      .||||+|+.....+   ++++|+++|   +++|.+|..|.||||+|+..++.+++++|+++ |+|+|.+|.  .|+||++
T Consensus       375 ~TpLh~A~~n~~~~v~~IlklLIs~G---ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~--~G~TpL~  448 (631)
T PHA02792        375 IMPLFPTLSIHESDVLSILKLCKPYI---DDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTK--YGSTCIG  448 (631)
T ss_pred             hhHHHHHHHhccHhHHHHHHHHHhcC---CccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHH
Confidence            69999988776654   578889884   45999999999999999999999999999976 999999999  9999999


Q ss_pred             HHHHHhhCC-h--hhHHHHHHHHHHHhhhhh
Q 045393          371 IAEITRANG-K--EIQKHLTLKALKTAYAKR  398 (580)
Q Consensus       371 ~a~~~~~~~-~--~~~~~~~~~~L~~~ga~~  398 (580)
                      +|....... .  ......+++.|++.|.+.
T Consensus       449 ~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        449 ICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            997622111 1  112345677888777554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-33  Score=291.65  Aligned_cols=263  Identities=20%  Similarity=0.185  Sum_probs=200.3

Q ss_pred             CHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH--hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCC
Q 045393           46 NQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR--IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGN  123 (580)
Q Consensus        46 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~  123 (580)
                      ..+.|+.|++.+..          +.. ..+.|+++.+..  .++.+++++|+++|++++             .+|..|.
T Consensus        17 ~~~~v~~ll~~~~~----------~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-------------~~d~~g~   72 (489)
T PHA02798         17 KLSTVKLLIKSCNP----------NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-------------GLDNEYS   72 (489)
T ss_pred             cHHHHHHHHhcCCh----------hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-------------CCCCCCC
Confidence            36788888876543          111 345666664443  347888888888888866             3677888


Q ss_pred             cHHHHHHHc-----CcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHH
Q 045393          124 TPLHNAVTN-----QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV  198 (580)
Q Consensus       124 tpL~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A  198 (580)
                      ||||.|+.+     ++.+++++|+++|++++ ..+..|.||||+|+.++..                             
T Consensus        73 TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~-----------------------------  122 (489)
T PHA02798         73 TPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYI-----------------------------  122 (489)
T ss_pred             ChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCc-----------------------------
Confidence            888887754     55677777777777665 3566666666666654310                             


Q ss_pred             HHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC---hHHHHHHHHhchhcccccCCCCCcHHHHHHHc----Cc
Q 045393          199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN---VKMAQRLLEESKRLAYKRDCNGETPLHLAAEN----GK  271 (580)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~----g~  271 (580)
                         ++.++++.|++.+.+ ++..|..|.||||+|++.++   .+++++|++.|+++....+..|.||||.++..    ++
T Consensus       123 ---~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~  198 (489)
T PHA02798        123 ---NNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRID  198 (489)
T ss_pred             ---ChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCC
Confidence               134555555555544 67778889999999998887   89999999999888444456789999988764    47


Q ss_pred             HHHHHHHHHhCCCccccccCCCCCHHH-------HHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhH
Q 045393          272 LKVLKLLINKYPDAIEIRNNSDRSILH-------VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV  344 (580)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~  344 (580)
                      .+++++|+++|++ ++..+..|+++++       .+...++.+++++|+.    +.++|.+|..|+||||+|+..++.++
T Consensus       199 ~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~----~~dvN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        199 ADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS----YIDINQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             HHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh----cCCCCCcCcCCccHHHHHHHcCcHHH
Confidence            9999999999998 7888888899877       2445677889998876    35699999999999999999999999


Q ss_pred             HHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          345 VFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       345 ~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +++|++. |+|+|.+|.  .|+|||++|..
T Consensus       274 v~~LL~~-GAdin~~d~--~G~TpL~~A~~  300 (489)
T PHA02798        274 FEYLLQL-GGDINIITE--LGNTCLFTAFE  300 (489)
T ss_pred             HHHHHHc-CCcccccCC--CCCcHHHHHHH
Confidence            9999975 999999999  99999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=272.66  Aligned_cols=309  Identities=13%  Similarity=0.096  Sum_probs=238.1

Q ss_pred             ccCCCCCchhhH-HHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH-hCCHHHHHHHHhcCccccc--
Q 045393           29 TSSPGGNAVLHM-AVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR-IGDRAIVSEIMKYLPAVNQ--  104 (580)
Q Consensus        29 ~~~~~g~t~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~~--  104 (580)
                      ..+.+|.+++|+ |...|+.|+|++|+++|++         ++.++..|.||+|+|+. .++.|++++|+++|++...  
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd---------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLE---------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCC---------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence            455678889986 5567899999999999998         88888889999999976 6999999999999987432  


Q ss_pred             -CCCcch--------------------hhhhhhccCCCCCcHHHHHHHcC-------cHHHHHHHHHcCCCCCcccccCC
Q 045393          105 -VGPAPV--------------------LESLFRMTDIEGNTPLHNAVTNQ-------HKRVIRILVEKDSVPSSYINKAY  156 (580)
Q Consensus       105 -~~~~~~--------------------~~~~l~~~d~~g~tpL~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~g  156 (580)
                       .|..+.                    ....++..|..|.||||+|+.++       +.|++++|+++|++++. .|..|
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~-~d~~g  215 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY-YTYRE  215 (631)
T ss_pred             ccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc-cCCCC
Confidence             122111                    12345678889999999999999       89999999999999885 67789


Q ss_pred             CCHHHHHHHcC--cHHHHHHHHhcCCCCcCC--------------CCCC----------CCc------------------
Q 045393          157 QTPLSIAIDAR--LNDIACFIIDKSPESLNT--------------TRLP----------DEL------------------  192 (580)
Q Consensus       157 ~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~--------------~~~~----------~~~------------------  192 (580)
                      .||||+|+.+.  ..|+++.|++..-.....              .+..          .|.                  
T Consensus       216 ~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~  295 (631)
T PHA02792        216 HTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIII  295 (631)
T ss_pred             ChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHH
Confidence            99999999999  889999998743210000              0000          000                  


Q ss_pred             ------------cHHHHHHHcC--CHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCC
Q 045393          193 ------------TLIHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN  258 (580)
Q Consensus       193 ------------t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  258 (580)
                                  -.||.-...+  +.++++.+++.+....   ......+++.|+..|+.+++++|+++|+++ +.+|.+
T Consensus       296 ~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~  371 (631)
T PHA02792        296 SSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDN  371 (631)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCC
Confidence                        1123333333  5678888888887632   223566799999999999999999999998 566666


Q ss_pred             C--CcHHHHHHHcCcH---HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393          259 G--ETPLHLAAENGKL---KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL  333 (580)
Q Consensus       259 g--~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L  333 (580)
                      |  .||||.|+.....   +++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|   +++|.+|..|+|||
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~G---ADIN~kD~~G~TpL  447 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNG---ADINITTKYGSTCI  447 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHH
Confidence            4  6999998876654   468899999999 8999999999999999999999999999994   55999999999999


Q ss_pred             HHHHh---cCC-------hhHHHHhhcCccccc
Q 045393          334 HLAAM---GLH-------SDVVFTLSRHKSVNI  356 (580)
Q Consensus       334 h~A~~---~~~-------~~~~~~Ll~~~~~d~  356 (580)
                      |+|+.   .++       .++++.|+++ |.++
T Consensus       448 ~~A~~~~~~~~~~i~~~~~~il~lLLs~-~p~i  479 (631)
T PHA02792        448 GICVILAHACIPEIAELYIKILEIILSK-LPTI  479 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhc-CCCh
Confidence            99976   222       3456777754 4443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=5.2e-31  Score=248.82  Aligned_cols=184  Identities=18%  Similarity=0.197  Sum_probs=160.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhc-Cc--------ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhccccc
Q 045393            3 QELLEVLRHGDEYKIKQLALRQ-DI--------FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKN   73 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~--------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   73 (580)
                      ++|..|+++|+.+++++|++.. ..        .+....+|-+||-.|+..||.++||.|+++|++         +|...
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~---------VN~tT  114 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS---------VNDTT  114 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc---------ccccc
Confidence            4678899999999999999953 11        222456788999999999999999999999988         88888


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Q 045393           74 LMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN  153 (580)
Q Consensus        74 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  153 (580)
                      ....|||.-||..|+.++|++|+++|+|++             ..|..|.|.||+||..||.+++++|++.|++++ .++
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad~~-------------IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks  180 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGADPE-------------IANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKS  180 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCCCc-------------ccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhc
Confidence            888899999999999999999999999976             589999999999999999999999999999998 588


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHh
Q 045393          154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG  212 (580)
Q Consensus       154 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~  212 (580)
                      ..|+|+||.|+++|+.|++++|+.++.. ... +. .|.|||..|...|..++++.|+.
T Consensus       181 ~kGNTALH~caEsG~vdivq~Ll~~ga~-i~~-d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  181 YKGNTALHDCAESGSVDIVQLLLKHGAK-IDV-DG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ccCchHHHhhhhcccHHHHHHHHhCCce-eee-cC-CCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999853 222 22 69999999999999999999985

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=254.95  Aligned_cols=205  Identities=26%  Similarity=0.392  Sum_probs=166.5

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccC-CCCChHHHHHHHcCCh
Q 045393          160 LSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNV  238 (580)
Q Consensus       160 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~  238 (580)
                      +..|++.|..+-++.+++....+.+..|. +|.++||.|+.+++.+++++|++++++ +|..+ ..+.||||+|+++|+.
T Consensus        48 ~v~A~q~G~l~~v~~lve~~g~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~G~~  125 (600)
T KOG0509|consen   48 IVKATQYGELETVKELVESEGESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARNGHI  125 (600)
T ss_pred             hhhHhhcchHHHHHHHHhhcCcCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHcCcH
Confidence            33444444444444444442233333333 555555555555566666666655555 55554 5688999999999999


Q ss_pred             HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393          239 KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM  318 (580)
Q Consensus       239 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  318 (580)
                      .+++.|+++|+++ +.+|.+|.+|||.|++.|+.-++-+|+.++.+ ++.+|.+|+||||+|+.+|....++.|++-+. 
T Consensus       126 ~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a-  202 (600)
T KOG0509|consen  126 SVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA-  202 (600)
T ss_pred             HHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc-
Confidence            9999999999999 78899999999999999999999999999988 99999999999999999999988999998844 


Q ss_pred             hhhccccc-CCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          319 ENLINLVD-RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       319 ~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                        .++.+| +.|+||||+|+..|+..+++ |+.+.|++.+.+|.  +|+||+++|++
T Consensus       203 --~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~--~g~tp~~LA~~  254 (600)
T KOG0509|consen  203 --SLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNT--NGKTPFDLAQE  254 (600)
T ss_pred             --cccccccccCCchHHHHHhcCCcceEe-hhhhcCCccccccc--CCCCHHHHHHH
Confidence              478877 99999999999999999999 77788999999999  99999999987

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=248.80  Aligned_cols=206  Identities=20%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             HHHHHHcCCHHHHHHHhhh-cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhccccc-CCCCcHHHH
Q 045393            5 LLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKN-LMDETALHI   82 (580)
Q Consensus         5 L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~tpLh~   82 (580)
                      ++.|++.|+++.++.+++. +...+..|.+|.|+||+||.+++.+++++|+++|++         +|+.. .-+.||||+
T Consensus        48 ~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad---------vn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   48 IVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD---------VNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC---------ccccCCCCCCCcchH
Confidence            4556666666666666665 444444555666666666666666666666666665         44444 445566666


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+++|+..+|+.|+++|++++             .+|.+|.||||.|++.++.-.|-+|+.++++.+ .+|.+|+||||+
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt-------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmw  184 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPT-------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMW  184 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCc-------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHH
Confidence            666666666666666666654             356666666666666666666666666665443 456666666666


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393          163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  235 (580)
                      |+.+|....+..|+..++. +...+...|.||||.|+..|+...+. |+.+++...+..|.+|.||+.+|...
T Consensus       185 Aaykg~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhcccHHHHHHHHhccc-ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            6666655555555555532 22223225555555555555555555 44444444555555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-28  Score=250.58  Aligned_cols=315  Identities=19%  Similarity=0.226  Sum_probs=255.5

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      ...+-.|+|-.||..|+.|+|+.|+.+|++         +..+|..|.+||..|+-.||..+|+.|+.+.++++.     
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rgan---------iehrdkkgf~plImaatagh~tvV~~llk~ha~vea-----  818 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGAN---------IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA-----  818 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhccc---------ccccccccchhhhhhcccCchHHHHHHHhhhhhhhh-----
Confidence            445677888888888898999888888888         778888888999888888888888888888877653     


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP  189 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  189 (580)
                             ..|..+.|+|.+||..|+.++|++||..|++.. .++....|||.+|...|+.++++.|+..|.+.......+
T Consensus       819 -------Qsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSk  890 (2131)
T KOG4369|consen  819 -------QSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSK  890 (2131)
T ss_pred             -------hcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccc
Confidence                   467888888888888888888888888888765 467778888888888888888888888887665666666


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .|..||..|..+|+.+.++.|++.+.+.......+.+|+|-+|+..|+.+.+..||...+.. ..+-+.|.|||+-++..
T Consensus       891 lgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  891 LGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             cCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcccchhhcC
Confidence            78888888888888888888888887744445667788888888888888888888888776 56777888888888888


Q ss_pred             CcHHHHHHHHHhCCCccccc--cCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393          270 GKLKVLKLLINKYPDAIEIR--NNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~--d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  347 (580)
                      |++|+=++|+..|+| .+..  -..-.|+|-+++..||.+.++.|++.   .+-+..++++|+|+|-+|+..|+...+..
T Consensus       970 Gyvdvg~~li~~gad-~nasPvp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg~lss~~i 1045 (2131)
T KOG4369|consen  970 GYVDVGNLLIAAGAD-TNASPVPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGGALSSCPI 1045 (2131)
T ss_pred             Cccccchhhhhcccc-cccCCCCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCCccccchH
Confidence            888888888888888 3321  22334888888888888888888876   34477888888888888888888888888


Q ss_pred             hhcCcccccccccccCCCCCHHHHHHH
Q 045393          348 LSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       348 Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      |+++ ++|++..|+  .-.|++..|.+
T Consensus      1046 l~~~-~ad~d~qdn--r~~S~~maafR 1069 (2131)
T KOG4369|consen 1046 LVSS-VADADQQDN--RTNSRTMAAFR 1069 (2131)
T ss_pred             Hhhc-ccChhhhhc--ccccccHHHHH
Confidence            8864 888888888  77777777665

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-28  Score=250.26  Aligned_cols=323  Identities=17%  Similarity=0.198  Sum_probs=290.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      +..|-.||..|+.|.++.|+.+|.....+|+.|.+||..|+-.||..+|+.|+++.++        +-.+.|..++|+|.
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~--------veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD--------VEAQSDRTKDTMLS  829 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhh--------hhhhcccccCceEE
Confidence            4578899999999999999999988888999999999999999999999999999988        34557889999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc-ccCCCCHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI-NKAYQTPL  160 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~tpL  160 (580)
                      +||..|+.++|+.|+..|++..             .+|-...|||-+|...|..++++.|+..|..++... .+.|.+||
T Consensus       830 lacsggr~~vvelLl~~ganke-------------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPL  896 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANKE-------------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPL  896 (2131)
T ss_pred             EecCCCcchHHHHHHHhhcccc-------------ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchh
Confidence            9999999999999999998754             367788999999999999999999999998877543 45789999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHH
Q 045393          161 SIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM  240 (580)
Q Consensus       161 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~  240 (580)
                      ++|..+|+.+.++.|++.+ .+++..-..+.+|.|-.|+..|+.+.+..||..... +..+-..|.|||+-++..|.+++
T Consensus       897 mlatmngh~~at~~ll~~g-sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdv  974 (2131)
T KOG4369|consen  897 MLATMNGHQAATLSLLQPG-SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDV  974 (2131)
T ss_pred             hhhhhccccHHHHHHhccc-chhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCcccc
Confidence            9999999999999999999 455655555889999999999999999999988766 78888999999999999999999


Q ss_pred             HHHHHHhchhcccc-cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchh
Q 045393          241 AQRLLEESKRLAYK-RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEME  319 (580)
Q Consensus       241 v~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  319 (580)
                      =+.|++.|+|.+.. ......|+|-+++..|+...++.|+...+. +..+|++|.|+|..|+..|+...+.+|+++   .
T Consensus       975 g~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~---~ 1050 (2131)
T KOG4369|consen  975 GNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSS---V 1050 (2131)
T ss_pred             chhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhc---c
Confidence            99999999887432 233457899999999999999999988887 899999999999999999999999999999   5


Q ss_pred             hhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          320 NLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       320 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ++++.+|+..+|+++-|.+.|+.++|++....
T Consensus      1051 ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1051 ADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             cChhhhhcccccccHHHHHhchhheeccccCc
Confidence            55899999999999999999999999887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.8e-27  Score=214.54  Aligned_cols=173  Identities=14%  Similarity=0.183  Sum_probs=151.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcC--ChHHHHHHHHhchhcccccC-CCCCcHHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG--NVKMAQRLLEESKRLAYKRD-CNGETPLHLA  266 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A  266 (580)
                      .+.+|||.|+..++.+.++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHH
Confidence            567899999999999999999864    4567889999999999854  899999999999998 4554 5899999998


Q ss_pred             HHc---CcHHHHHHHHHhCCCccccccCCCCCHHHHHHH--cCCHHHHHHHhcCcchhhhcccccCCCCcHHHH-HHhcC
Q 045393          267 AEN---GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK--HGNWNIVSFILRSPEMENLINLVDRNGNTPLHL-AAMGL  340 (580)
Q Consensus       267 ~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~-A~~~~  340 (580)
                      +..   ++.+++++|+++|++ ++.+|..|+||||+|+.  .++.+++++|++.+   .+++.+|.+|+||||. |+..+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g---adin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG---VSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC---CCcccccCCCCcHHHHHHHhcC
Confidence            764   579999999999999 89999999999999986  46899999999984   5599999999999995 56678


Q ss_pred             ChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          341 HSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       341 ~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +.+++++|++. |+|++.+|.  .|+||+++|..
T Consensus       171 ~~~iv~~Ll~~-Gadi~~~d~--~g~tpl~la~~  201 (209)
T PHA02859        171 DKKIFDFLTSL-GIDINETNK--SGYNCYDLIKF  201 (209)
T ss_pred             CHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh
Confidence            89999999965 999999999  99999999986

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=221.70  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=139.3

Q ss_pred             HHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHH
Q 045393           49 VIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHN  128 (580)
Q Consensus        49 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~  128 (580)
                      +-++++.+|.+         ++.++.+|     +|+..+..|+++.|+.+|++++..      ..++ .++..++|+||+
T Consensus        64 ~~~~~~~~~~~---------i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~------~~~~-~~~~~~~~~L~~  122 (437)
T PHA02795         64 LYDYFRIHRDN---------IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIF------SIII-KNCNSVQDLLLY  122 (437)
T ss_pred             HHHHHHHcCcc---------hhhhhhhh-----HHhhcchHHHHHHHHhcccccchh------hhhh-hccccccHHHHH
Confidence            45778888887         66666666     899999999999999999986621      1122 367789999999


Q ss_pred             HHH--cCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHH
Q 045393          129 AVT--NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDI  206 (580)
Q Consensus       129 A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  206 (580)
                      ++.  .|+.++|++|+++|++.+.   .++.||+|.|+..++.+++++|+++|....+..     .++++          
T Consensus       123 ~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~-----~~~l~----------  184 (437)
T PHA02795        123 YLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDV-----KLDLY----------  184 (437)
T ss_pred             HHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccc-----cchhh----------
Confidence            999  8999999999999999864   345899999999999999999999986332211     11110          


Q ss_pred             HHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcc
Q 045393          207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI  286 (580)
Q Consensus       207 ~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  286 (580)
                                     +..+.+++|.|+..++.+++++|+++|++. +.+|..|.||||+|+..|+.+++++|+++|++ +
T Consensus       185 ---------------~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-I  247 (437)
T PHA02795        185 ---------------KIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-V  247 (437)
T ss_pred             ---------------hhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C
Confidence                           112334555555555555555555555544 44455555555555555555555555555555 4


Q ss_pred             ccccCCCCCHHHHHHHcCC--------HHHHHHHhcC
Q 045393          287 EIRNNSDRSILHVAAKHGN--------WNIVSFILRS  315 (580)
Q Consensus       287 ~~~d~~g~t~Lh~A~~~~~--------~~iv~~Ll~~  315 (580)
                      +.+|..|+||||+|+.+|+        .+++++|+++
T Consensus       248 N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        248 NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            5555555555555555442        3455555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.4e-25  Score=204.63  Aligned_cols=177  Identities=18%  Similarity=0.215  Sum_probs=126.9

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcC--cHHHHHHHHhcCCCCcCCCCCCCCccHHH
Q 045393          119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDAR--LNDIACFIIDKSPESLNTTRLPDELTLIH  196 (580)
Q Consensus       119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  196 (580)
                      ...+.||||+|++.|+.++|+.|++...    ..+..|.||||+|+.++  +.+++++|++++                 
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n----~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g-----------------   76 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVN----DCNDLYETPIFSCLEKDKVNVEILKFLIENG-----------------   76 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhh----ccCccCCCHHHHHHHcCCCCHHHHHHHHHCC-----------------
Confidence            4556677777777777777777665421    23455555555555432  445555555544                 


Q ss_pred             HHHHcCCHHHHHHHHhhCCccccccC-CCCChHHHHHHHc---CChHHHHHHHHhchhcccccCCCCCcHHHHHHH--cC
Q 045393          197 FVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE--NG  270 (580)
Q Consensus       197 ~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g  270 (580)
                                        .+ ++.++ ..|.||||+|+..   ++.+++++|+++|+++ +.+|..|.||||.|+.  .+
T Consensus        77 ------------------ad-vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~  136 (209)
T PHA02859         77 ------------------AD-VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNV  136 (209)
T ss_pred             ------------------CC-CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccC
Confidence                              33 44444 3677777776653   4678888888888887 6778888999998875  46


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCCHHHH-HHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          271 KLKVLKLLINKYPDAIEIRNNSDRSILHV-AAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                      +.+++++|+++|++ ++.+|.+|.||||. |+..++.+++++|+++|   .+++.+|..|.||||+|..++
T Consensus       137 ~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G---adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        137 RINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLG---IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHhhhh
Confidence            78999999999988 78889999999995 56678889999999884   458889999999999998654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=5.4e-24  Score=234.14  Aligned_cols=256  Identities=20%  Similarity=0.153  Sum_probs=182.4

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhc--CcccccCCCcchhhhhhhccCCCCCcHHH-HHHHcCcHHHHHHHHHcCCCCCc
Q 045393           74 LMDETALHIAARIGDRAIVSEIMKY--LPAVNQVGPAPVLESLFRMTDIEGNTPLH-NAVTNQHKRVIRILVEKDSVPSS  150 (580)
Q Consensus        74 ~~g~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~~l~~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~~~~~~~  150 (580)
                      ..++.+++.|++.|+.+.++.+++.  +.++|             ..|..|.|||| .|+.+++.++++.|+++|.    
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-------------~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNIN-------------CPDRLGRSALFVAAIENENLELTELLLNLSC----   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCC-------------CcCccchhHHHHHHHhcChHHHHHHHHhCCC----
Confidence            4567999999999999999999998  44443             57889999999 8899999999999999886    


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393          151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~  230 (580)
                       .+..|.||||.|+.+ ..+.++.++........     .+..+              .+..   +.....+..|.||||
T Consensus        78 -~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~-----~~~~~--------------~~~~---~~~~~~~~~G~TpLh  133 (743)
T TIGR00870        78 -RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFR-----KSGPL--------------ELAN---DQYTSEFTPGITALH  133 (743)
T ss_pred             -CCCcChHHHHHHHhc-cHHHHHHHHHHHhhccc-----ccCch--------------hhhc---cccccccCCCCcHHH
Confidence             567889999998873 33333333332211000     00000              0000   001122346888888


Q ss_pred             HHHHcCChHHHHHHHHhchhccccc-------------CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393          231 YAAASGNVKMAQRLLEESKRLAYKR-------------DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL  297 (580)
Q Consensus       231 ~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  297 (580)
                      +|+.+|+.++++.|+++|+++....             ...|.||||.|+..|+.+++++|++++++ ++.+|..|+|||
T Consensus       134 lAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~L  212 (743)
T TIGR00870       134 LAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLL  212 (743)
T ss_pred             HHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHH
Confidence            8888888888888888887763211             13588999999999999999999999998 889999999999


Q ss_pred             HHHHHcC---------CHHHHHHHhcCcchhhhc----ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCC
Q 045393          298 HVAAKHG---------NWNIVSFILRSPEMENLI----NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSAR  364 (580)
Q Consensus       298 h~A~~~~---------~~~iv~~Ll~~~~~~~~~----n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~  364 (580)
                      |+|+..+         ...+.+++++.+......    +..|.+|.||||+|+..|+.++++.|++. +.+......  .
T Consensus       213 h~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a--~  289 (743)
T TIGR00870       213 HLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVA--W  289 (743)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeec--c
Confidence            9999986         234566666654433333    67899999999999999999999999863 222222223  5


Q ss_pred             CCCHHHHHHH
Q 045393          365 SNTALEIAEI  374 (580)
Q Consensus       365 g~t~l~~a~~  374 (580)
                      ...|.+.+..
T Consensus       290 ~~~~~~~~~~  299 (743)
T TIGR00870       290 PNGQQLLSLY  299 (743)
T ss_pred             CcchHhHhhh
Confidence            5556655544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.1e-26  Score=196.58  Aligned_cols=239  Identities=18%  Similarity=0.169  Sum_probs=203.1

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHH
Q 045393          118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF  197 (580)
Q Consensus       118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  197 (580)
                      .+..|++-+-.+.+.++.+++..+....++.....+.+|++.++.++-.++.+.++..+.++... +..+. -+.+|+..
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~-~p~s~~sl  135 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSL-MPWSPLSL  135 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-Ccccc-ccCChhhH
Confidence            55677777888888899888888888877777677888999999999999988888888887533 23333 67889999


Q ss_pred             HHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHH
Q 045393          198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL  277 (580)
Q Consensus       198 A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  277 (580)
                      ++.+.+.+.+..+.+.   .+|..|+.|.|||.+|+..|+++.|++|++.|+++ ....+...++|.+|++.|+.++|++
T Consensus       136 sVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHH
Confidence            9988877776665554   38899999999999999999999999999999998 5567788999999999999999999


Q ss_pred             HHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccc
Q 045393          278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (580)
Q Consensus       278 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~  357 (580)
                      |+.+++| +|..|-+|-|||-+|++.++.++++.|++.   +++++..|..|++++.+|+..|+- +++..+++ -++.+
T Consensus       212 LL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~-h~lkl  285 (296)
T KOG0502|consen  212 LLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK-HALKL  285 (296)
T ss_pred             HHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHhhhH-HHHHHHHH-HHHHH
Confidence            9999999 999999999999999999999999999999   555999999999999999999987 77766654 56777


Q ss_pred             cccccCCCCCHHH
Q 045393          358 AKNHSARSNTALE  370 (580)
Q Consensus       358 ~~n~~~~g~t~l~  370 (580)
                      .+|+  .-+||+|
T Consensus       286 ~Q~~--~~~~~~~  296 (296)
T KOG0502|consen  286 CQDS--EKRTPLH  296 (296)
T ss_pred             hhcc--cCCCCCC
Confidence            7777  7777753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=215.02  Aligned_cols=237  Identities=15%  Similarity=0.159  Sum_probs=172.4

Q ss_pred             HHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH--hCCHHHHHHH
Q 045393           18 KQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR--IGDRAIVSEI   95 (580)
Q Consensus        18 ~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~~v~~L   95 (580)
                      +++++.|...+..+.+|     +|+..+..|+++.|+.+|.+++...   .+-.++..++|+||+++.  .|+.++|++|
T Consensus        66 ~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~---~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         66 DYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFS---IIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhh---hhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            55666666555555555     9999999999999999999822110   011577889999999999  8999999999


Q ss_pred             HhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 045393           96 MKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFI  175 (580)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  175 (580)
                      +++|++++.               .++.||||.|+..++.+++++|+++|++....    +.+|++-+            
T Consensus       138 I~~GADIn~---------------~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~----~~~~l~~~------------  186 (437)
T PHA02795        138 VDHGAVIYK---------------IECLNAYFRGICKKESSVVEFILNCGIPDEND----VKLDLYKI------------  186 (437)
T ss_pred             HHCCCCCCC---------------CCCCCHHHHHHHcCcHHHHHHHHhcCCccccc----ccchhhhh------------
Confidence            999999762               24589999999999999999999999854321    12222111            


Q ss_pred             HhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhccccc
Q 045393          176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKR  255 (580)
Q Consensus       176 l~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  255 (580)
                                    .+.+++|.|...++.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+
T Consensus       187 --------------~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~  250 (437)
T PHA02795        187 --------------IQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAV  250 (437)
T ss_pred             --------------hccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCc
Confidence                          345667777777777777777776654 7777788888888888888888888888888777 667


Q ss_pred             CCCCCcHHHHHHHcCc--------HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          256 DCNGETPLHLAAENGK--------LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       256 ~~~g~tpL~~A~~~g~--------~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      +..|.||||+|+..|+        .+++++|++++++ ++..+.   +++..  ...+.++++.+++.
T Consensus       251 d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad-I~~~~~---~~~~~--~~~n~~~ik~lI~y  312 (437)
T PHA02795        251 MSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS-IDCIKL---AILNN--TIENHDVIKLCIKY  312 (437)
T ss_pred             CCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC-CCchhH---Hhhhc--ccchHHHHHHHHHH
Confidence            7788888888887773        5788888888777 443322   22221  11256777777765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-25  Score=223.00  Aligned_cols=260  Identities=25%  Similarity=0.312  Sum_probs=213.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHhhhc-------------CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhh
Q 045393            1 MDQELLEVLRHGDEYKIKQLALRQ-------------DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYS   67 (580)
Q Consensus         1 m~~~L~~A~~~g~~~~~~~ll~~~-------------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   67 (580)
                      |++.+..|++.||.+.+..+++..             +..+..|.+|.|+||.|+.+|+.++++.|++..+-        
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~--------   74 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL--------   74 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh--------
Confidence            567899999999999999999862             44566788999999999999999999999998876        


Q ss_pred             hcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393           68 LLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (580)
Q Consensus        68 ~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  147 (580)
                       ++..|..|.+|||+|+.+|+.++++.++.++...|             ..+.+|.||||.|++.||.+++.+|+.+|++
T Consensus        75 -ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-------------a~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen   75 -LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-------------AVNIENETPLHLAAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             -hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-------------cccccCcCccchhhhhcchHHHHHHHhcCCC
Confidence             77788999999999999999999999999884443             6788999999999999999999999999999


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCCh
Q 045393          148 PSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN  227 (580)
Q Consensus       148 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  227 (580)
                      +. .+|..+.|+|.+|++-|..++++.|++.. -....                        +...+   -..++-.+.+
T Consensus       141 p~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~-~~~~~------------------------~~~~~---~~~~~~~~~~  191 (854)
T KOG0507|consen  141 PF-IRNNSKETVLDLASRFGRAEVVQMLLQKK-FPVQS------------------------SLRVG---DIKRPFPAIY  191 (854)
T ss_pred             cc-ccCcccccHHHHHHHhhhhHHHHHHhhhc-cchhh------------------------cccCC---CCCCCCCCcC
Confidence            87 68999999999999999999999999872 11000                        11111   2334566788


Q ss_pred             HHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc---C
Q 045393          228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH---G  304 (580)
Q Consensus       228 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~  304 (580)
                      |||.|+++|+.++++.|++.|.+. +... ..-|+||.|+..|..++|++|++.|.. ...+|.+|+|+|.+-...   .
T Consensus       192 plHlaakngh~~~~~~ll~ag~di-n~~t-~~gtalheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~~~~  268 (854)
T KOG0507|consen  192 PLHLAAKNGHVECMQALLEAGFDI-NYTT-EDGTALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQENR  268 (854)
T ss_pred             CcchhhhcchHHHHHHHHhcCCCc-cccc-ccchhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcchhh
Confidence            999999999999999999999887 3333 344889999999999999999999888 788899999988876643   3


Q ss_pred             CHHHHHHHhc
Q 045393          305 NWNIVSFILR  314 (580)
Q Consensus       305 ~~~iv~~Ll~  314 (580)
                      ..+++-++..
T Consensus       269 ~~ei~ga~~~  278 (854)
T KOG0507|consen  269 RYEIAGAVKN  278 (854)
T ss_pred             hhhhhhhhhc
Confidence            3445444443

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=2.2e-24  Score=176.07  Aligned_cols=111  Identities=41%  Similarity=0.603  Sum_probs=96.7

Q ss_pred             chhhhhhhcceeeehhhHHHHhhhhcccCCccccCCCCCCCcccccccc-hhHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 045393          416 GEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRA-SFQAFVITDTIAMTSAMAAAAIIFWSFWRS  494 (580)
Q Consensus       416 ~e~~~~~~~~~~vvA~Liatv~f~a~~~~pgg~~~~~~~~g~~~~~~~~-~~~~f~~~~~~a~~~s~~~~~~~~~~~~~~  494 (580)
                      +||.+++++++++||+||||+||+|+++||||+|+++++.|+|++.+++ .|..|+++|++||++|++++++++ +.+ .
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~-~   78 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGL-D   78 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHh-h
Confidence            3689999999999999999999999999999999987689999998877 899999999999999999999988 433 2


Q ss_pred             cchhhhh-hHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045393          495 KTESLMD-TLPLAIGFTWIALVSMTLAFVTGLYAV  528 (580)
Q Consensus       495 ~~~~~~~-~~~~~~~~~~~~~~~~~~af~~~~~~~  528 (580)
                      +..+... .+..+..++|+++.+|++||++|+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   79 DFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2233333 377889999999999999999999864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=3.2e-24  Score=183.24  Aligned_cols=265  Identities=20%  Similarity=0.252  Sum_probs=225.5

Q ss_pred             CchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhh
Q 045393           35 NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL  114 (580)
Q Consensus        35 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (580)
                      -..+..++..|-.+--..|......           -++..|+.-+-.+.+.|+.+++..+....++.+.          
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s~-----------~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~----------   90 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEISA-----------LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAID----------   90 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHHH-----------HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCC----------
Confidence            3456666666666655555543322           2566788888889999999999988887665332          


Q ss_pred             hhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccH
Q 045393          115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTL  194 (580)
Q Consensus       115 l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~  194 (580)
                        .++.+|.++++.++-.++...+..++.+++..+ ..+--+.+|+.+++...+.+.+..+.++   ..+..+. .|.||
T Consensus        91 --~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgn-evs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De-~GfTp  163 (296)
T KOG0502|consen   91 --ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGN-EVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDE-FGFTP  163 (296)
T ss_pred             --CCCchhhhhhhhcCCCCCcceeeeeecccccCC-ccccccCChhhHHHHHHHHHHHHHHhhc---cccCccc-cCchH
Confidence              367779999999999999999999999998776 4677889999999999888887776654   3456666 99999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHH
Q 045393          195 IHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKV  274 (580)
Q Consensus       195 L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  274 (580)
                      |..|+..|+.+.+++|++.+.+ ++...+...++|.+|++.|..++|+.|++++.++ +..|.+|-|||.+|++.++.++
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkc  241 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKC  241 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHH
Confidence            9999999999999999999987 8888888999999999999999999999999998 7889999999999999999999


Q ss_pred             HHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHH
Q 045393          275 LKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH  334 (580)
Q Consensus       275 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  334 (580)
                      ++.|++.|++ ++..+..|++++..|+..|+. +|+..+++   ..+.+.+|+.-.||+|
T Consensus       242 ve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  242 VESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence            9999999999 899999999999999999998 88888887   5568889988888876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.1e-23  Score=228.16  Aligned_cols=255  Identities=15%  Similarity=0.110  Sum_probs=166.6

Q ss_pred             CCCCchhhHHHhcCCHHHHHHHHhh--CchhHHhhhhhhcccccCCCCcHHH-HHHHhCCHHHHHHHHhcCcccccCCCc
Q 045393           32 PGGNAVLHMAVRFRNQQVIREILRQ--QDFIALRLHYSLLRQKNLMDETALH-IAARIGDRAIVSEIMKYLPAVNQVGPA  108 (580)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~g~tpLh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  108 (580)
                      ..+...++.|+..|+.+.++.++++  +.+         ++..|..|+|||| .|+.+++.++++.|+++++        
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~---------in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~--------   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN---------INCPDRLGRSALFVAAIENENLELTELLLNLSC--------   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC---------CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC--------
Confidence            3567899999999999999999998  555         7788899999999 8888999999999998764        


Q ss_pred             chhhhhhhccCCCCCcHHHHHHHcC---cHHHHHHHHHcCCCC---------CcccccCCCCHHHHHHHcCcHHHHHHHH
Q 045393          109 PVLESLFRMTDIEGNTPLHNAVTNQ---HKRVIRILVEKDSVP---------SSYINKAYQTPLSIAIDARLNDIACFII  176 (580)
Q Consensus       109 ~~~~~~l~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  176 (580)
                               .+..|.||||.|+.++   ..++++.+.+.+.+.         ....+..|.||||+|+.+|+.+++++|+
T Consensus        78 ---------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL  148 (743)
T TIGR00870        78 ---------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL  148 (743)
T ss_pred             ---------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHH
Confidence                     3567999999998732   233444444444321         0112345788888888888888888888


Q ss_pred             hcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccC
Q 045393          177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD  256 (580)
Q Consensus       177 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  256 (580)
                      +++++. +...  .+....                . . . .......|.||||.|+..|+.+++++|+++|+++ +.+|
T Consensus       149 ~~GAdv-~~~~--~~~~~~----------------~-~-~-~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d  205 (743)
T TIGR00870       149 ERGASV-PARA--CGDFFV----------------K-S-Q-GVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTAD  205 (743)
T ss_pred             hCCCCC-CcCc--CCchhh----------------c-C-C-CCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHh
Confidence            877532 2211  010000                0 0 0 0011235777777777777777777777777766 5667


Q ss_pred             CCCCcHHHHHHHcC---------cHHHHHHHHHhCCCc--c----ccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhh
Q 045393          257 CNGETPLHLAAENG---------KLKVLKLLINKYPDA--I----EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENL  321 (580)
Q Consensus       257 ~~g~tpL~~A~~~g---------~~~~v~~Ll~~~~~~--~----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  321 (580)
                      ..|+||||+|+..+         ...+.+++++.+...  .    +..|.+|.||||+|+..|+.+++++|++.+..   
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~---  282 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK---  282 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh---
Confidence            77777777777765         223444555443331  1    45677778888888888888888877764211   


Q ss_pred             cccccCCCCcHHHHHHh
Q 045393          322 INLVDRNGNTPLHLAAM  338 (580)
Q Consensus       322 ~n~~d~~G~T~Lh~A~~  338 (580)
                      .......++.|.+.+..
T Consensus       283 ~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       283 QKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             cceeeccCcchHhHhhh
Confidence            22233445555555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.4e-22  Score=223.93  Aligned_cols=174  Identities=23%  Similarity=0.269  Sum_probs=160.0

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      ...++|+.|+..|+.++++.|++.+.+ ++..|.+|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||.|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHh
Confidence            567899999999999999999998876 8999999999999999999999999999999987 78899999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++.++. .+  ...|.++||.|+.+|+.+++++|+++|   +++|.+|.+|+||||+|+..|+.+++++|+
T Consensus       602 g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~G---adin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        602 KHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRNDLTAMKELLKQG---LNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             CCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            999999999987665 22  356789999999999999999999994   559999999999999999999999999999


Q ss_pred             cCcccccccccccCCC-CCHHHHHHH
Q 045393          350 RHKSVNIRAKNHSARS-NTALEIAEI  374 (580)
Q Consensus       350 ~~~~~d~~~~n~~~~g-~t~l~~a~~  374 (580)
                      + .|+|++.+|.  .| .||++++..
T Consensus       676 ~-~GAdv~~~~~--~g~~t~~~l~~~  698 (823)
T PLN03192        676 M-NGADVDKANT--DDDFSPTELREL  698 (823)
T ss_pred             H-cCCCCCCCCC--CCCCCHHHHHHH
Confidence            6 4999999998  87 999998876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=5.5e-23  Score=205.78  Aligned_cols=250  Identities=22%  Similarity=0.303  Sum_probs=164.0

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCcccccCCCc--chhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccC
Q 045393           78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPA--PVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA  155 (580)
Q Consensus        78 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  155 (580)
                      +-|.-|++.|+++.+..|++.-..  ..+..  .....-.+.+|.+|.|+||.|+.+|+.+++++|+++.+-.. ..+..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~--r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKG--RSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCC--CCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhcc
Confidence            456779999999999999986432  11110  01122355678899999999999999999999999887554 45677


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393          156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (580)
Q Consensus       156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  235 (580)
                      |.+|||+|+..|+.++++.++..+ +..+.... .|.+|||.|+.+|+.+.+.+|+.++.+ .-.++.++.|+|..|++.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~-d~~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQT-DILNAVNI-ENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRF  158 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcc-cCCCcccc-cCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHh
Confidence            788888888888888888877776 44444444 667777777777777777777766655 556666677777777777


Q ss_pred             CChHHHHHHHHhchhcc-------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHH
Q 045393          236 GNVKMAQRLLEESKRLA-------YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNI  308 (580)
Q Consensus       236 g~~~~v~~Ll~~~~~~~-------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  308 (580)
                      |..++++.|+...-...       ..++-.+.+|+|.|+++|+.++++.|++.|.+ ++.....| |+||-|+..|..++
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~ev  236 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEV  236 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchh
Confidence            77777776666521110       11233445566666666666666666666666 55544444 66666666666666


Q ss_pred             HHHHhcCcchhhhcccccCCCCcHHHHHHh
Q 045393          309 VSFILRSPEMENLINLVDRNGNTPLHLAAM  338 (580)
Q Consensus       309 v~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  338 (580)
                      |++|++.|..   ...+|.+|.|+|.+-..
T Consensus       237 vr~ll~~gin---~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  237 VRFLLEIGIN---THIKNQHGQTALDIIID  263 (854)
T ss_pred             hhHHHhhccc---cccccccchHHHHHHHh
Confidence            6666665333   55566666666655443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=3.2e-21  Score=213.20  Aligned_cols=193  Identities=12%  Similarity=0.108  Sum_probs=165.2

Q ss_pred             HHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhC
Q 045393          135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN  214 (580)
Q Consensus       135 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~  214 (580)
                      .++-..+.+.+..   ..+..+.++|+.|+..|+.++++.|++.+. +++..+. .|.||||.|+..|+.++++.|++.+
T Consensus       507 l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~-d~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~g  581 (823)
T PLN03192        507 LNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKL-DPDIGDS-KGRTPLHIAASKGYEDCVLVLLKHA  581 (823)
T ss_pred             ccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CCCCHHHHHHHcChHHHHHHHHhcC
Confidence            3444445444432   234456799999999999999999999984 5566666 8999999999999999999999987


Q ss_pred             CccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC
Q 045393          215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR  294 (580)
Q Consensus       215 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  294 (580)
                      .+ ++.+|.+|+||||.|+..|+.++++.|++.++..   ....+.++||.|+..|+.+++++|+++|++ ++.+|.+|+
T Consensus       582 ad-in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~  656 (823)
T PLN03192        582 CN-VHIRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGA  656 (823)
T ss_pred             CC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence            65 8999999999999999999999999999877544   234678999999999999999999999999 899999999


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCC-CcHHHHHHhcC
Q 045393          295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG-NTPLHLAAMGL  340 (580)
Q Consensus       295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G-~T~Lh~A~~~~  340 (580)
                      ||||+|+..|+.+++++|+++|   ++++..|..| .||++++....
T Consensus       657 TpLh~A~~~g~~~iv~~Ll~~G---Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        657 TALQVAMAEDHVDMVRLLIMNG---ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CHHHHHHHCCcHHHHHHHHHcC---CCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999995   5589999988 99999886543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=7.7e-22  Score=191.16  Aligned_cols=229  Identities=24%  Similarity=0.258  Sum_probs=165.0

Q ss_pred             chhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           36 AVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        36 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      -.+.-|+..|+.+-|+.|+..|+.         ++..|.+|.|+||-+|...+.+||++|+++|++++            
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~---------~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn------------  100 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS---------PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN------------  100 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC---------ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc------------
Confidence            356678899999999999999988         68899999999999999999999999999999987            


Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHH
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI  195 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L  195 (580)
                       ..|.+|+||||.|+..|+..++++|+++|++.. ..|.+|..|...+......++...-......+            +
T Consensus       101 -~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~------------i  166 (527)
T KOG0505|consen  101 -AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMARQGID------------I  166 (527)
T ss_pred             -ccccccCCcchhhcccccHHHHHHHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHHhccc------------H
Confidence             589999999999999999999999999999887 46888888877765554444444443332111            1


Q ss_pred             HHHHHcCC---HHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393          196 HFVVMRQN---YDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL  272 (580)
Q Consensus       196 ~~A~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  272 (580)
                      ..+-....   ..-+...+..+ ...+.++..|.|.||.|+.+|..+..++|++.|.++ +.+|.+|+||||.|+..|..
T Consensus       167 ea~R~~~e~~ml~D~~q~l~~G-~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~  244 (527)
T KOG0505|consen  167 EAARKAEEQTMLDDARQWLNAG-AELDARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQE  244 (527)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcc-ccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhH
Confidence            11111111   11122233333 225555555677777777777777777777777666 56666777777777777777


Q ss_pred             HHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          273 KVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      +++++|++++++ .+.....|+||+.+|..
T Consensus       245 ~~~elL~~~ga~-~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  245 DACELLVEHGAD-MDAKTKMGETPLDVADE  273 (527)
T ss_pred             hHHHHHHHhhcc-cchhhhcCCCCccchhh
Confidence            777777777776 66666677777666654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2e-21  Score=178.67  Aligned_cols=150  Identities=26%  Similarity=0.315  Sum_probs=130.6

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHH-----cCcHHHHHHHHHhCCCccccc-cC
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE-----NGKLKVLKLLINKYPDAIEIR-NN  291 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~-----~g~~~~v~~Ll~~~~~~~~~~-d~  291 (580)
                      +|..|.+|+|+|||++.+++.++|+.||+.|....+..++-|+||+++++.     ..+.++|..|.+-|.  +|.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhhh
Confidence            577799999999999999999999999999976668888999999999885     346778888886553  3433 56


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHH
Q 045393          292 SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI  371 (580)
Q Consensus       292 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~  371 (580)
                      .|+|+|++|+.+|+.++|+.||..   ++++|.+|.+|.|+|+.|+..||.+++++||...++|....|.  +|-|+|.+
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLac---gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~--DgSTAl~I  413 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLAC---GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV--DGSTALSI  413 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHc---cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC--CCchhhhh
Confidence            799999999999999999999987   5669999999999999999999999999999999999999999  99999999


Q ss_pred             HHH
Q 045393          372 AEI  374 (580)
Q Consensus       372 a~~  374 (580)
                      |.+
T Consensus       414 Ale  416 (452)
T KOG0514|consen  414 ALE  416 (452)
T ss_pred             HHh
Confidence            987

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.2e-20  Score=155.34  Aligned_cols=141  Identities=32%  Similarity=0.369  Sum_probs=131.1

Q ss_pred             HHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393          228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN  307 (580)
Q Consensus       228 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  307 (580)
                      .+.+|+..+....|+.||+..++..+.+|.+|.||||.|+++|+.+|++.|+..|++ .+.+...|+||||-||+.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            467889999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh-hHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          308 IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS-DVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       308 iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      ++..|+.+   ++++|++.+...||||+|+...+. ..+++|+..+++++-.+|.  .+.||+++|.+
T Consensus       145 va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn--~eeta~~iARR  207 (228)
T KOG0512|consen  145 VAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN--LEETAFDIARR  207 (228)
T ss_pred             HHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC--ccchHHHHHHH
Confidence            99999999   555999999999999999988774 5577888889999999999  99999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=4.5e-21  Score=176.31  Aligned_cols=162  Identities=26%  Similarity=0.399  Sum_probs=145.1

Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc-----CChHHHHHHHHhchhcccccCCC
Q 045393          184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS-----GNVKMAQRLLEESKRLAYKRDCN  258 (580)
Q Consensus       184 ~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~  258 (580)
                      +..+. +|+|+||+++.+.|+++|+.||+.+..+++..++-|.||+++++..     .+.++|..|.+.|.-. -.....
T Consensus       262 NlaDs-NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~  339 (452)
T KOG0514|consen  262 NLADS-NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQH  339 (452)
T ss_pred             hhhcC-CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhh
Confidence            34455 9999999999999999999999999999999999999999998754     4678999999887432 445668


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHh
Q 045393          259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM  338 (580)
Q Consensus       259 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~  338 (580)
                      |+|+|++|+.+|+.++|+.|+..|+| +|++|.+|.|+|++|+++||.|++++||..+.  .++...|.+|.|+|.+|..
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~--cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS--CDISLTDVDGSTALSIALE  416 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCc--ccceeecCCCchhhhhHHh
Confidence            99999999999999999999999999 99999999999999999999999999998864  4588899999999999999


Q ss_pred             cCChhHHHHhhc
Q 045393          339 GLHSDVVFTLSR  350 (580)
Q Consensus       339 ~~~~~~~~~Ll~  350 (580)
                      .|+.++.-+|..
T Consensus       417 agh~eIa~mlYa  428 (452)
T KOG0514|consen  417 AGHREIAVMLYA  428 (452)
T ss_pred             cCchHHHHHHHH
Confidence            999999887754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=165.99  Aligned_cols=141  Identities=18%  Similarity=0.255  Sum_probs=121.8

Q ss_pred             ccccCCCCChHHHHHHHcCCh----HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHH---HHHHHHhCCCcccccc
Q 045393          218 IDRLDWHQRNPLHYAAASGNV----KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKV---LKLLINKYPDAIEIRN  290 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~~d  290 (580)
                      ++..+.++.+++|.|++.|+.    +++++|.+.+... +.+|..|.||||+|+..|+.+.   +++|+++|++ ++.+|
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCC
Confidence            555677888999999999998    5666777778776 6778899999999999988654   8999999998 88888


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHhc-CcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCC
Q 045393          291 -NSDRSILHVAAKHGNWNIVSFILR-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSN  366 (580)
Q Consensus       291 -~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~  366 (580)
                       ..|+||||+|+.+++.+++++|++ .   +.+++.+|..|.||||+|+..++.+++++|+.+ |++++.++.  .|.
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~---gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~--~~~  162 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQL---GVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLS--IGL  162 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcc---CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCccc--CCc
Confidence             589999999999999999999995 5   445899999999999999999999999999965 899999988  654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-19  Score=182.62  Aligned_cols=214  Identities=20%  Similarity=0.234  Sum_probs=164.2

Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCC--------CCcCCCCCCCCccHHHHHHHc---CCHHHHHHHHhhCCcccccc----C
Q 045393          158 TPLSIAIDARLNDIACFIIDKSP--------ESLNTTRLPDELTLIHFVVMR---QNYDIMVKILGTNKELIDRL----D  222 (580)
Q Consensus       158 tpL~~A~~~~~~~~v~~Ll~~~~--------~~~~~~~~~~~~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~----d  222 (580)
                      .++..+...+..+....++....        .+.+.... .|.|.||.|..+   ++.++++.|++..+..++..    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa-~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGA-TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccc-hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            45555555555555555544431        12222233 788889888874   34578888888887776654    3


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccc--------cC--------------CCCCcHHHHHHHcCcHHHHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYK--------RD--------------CNGETPLHLAAENGKLKVLKLLIN  280 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------~~--------------~~g~tpL~~A~~~g~~~~v~~Ll~  280 (580)
                      ..|.||||.|+.+.+.++|+.|++.|+|+...        .|              ..|+.||.+||..++.|++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            46899999999999999999999998876321        11              147889999999999999999999


Q ss_pred             hCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC-cc------
Q 045393          281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH-KS------  353 (580)
Q Consensus       281 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~-~~------  353 (580)
                      +++| ++.+|.+|+|.||..+.+-..++..+++++++. ++...+|++|-|||.+|++.|..++.+.+++. +-      
T Consensus       262 ~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YG  339 (782)
T KOG3676|consen  262 HGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYG  339 (782)
T ss_pred             cCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeec
Confidence            9999 999999999999999999999999999999776 66788999999999999999999999999876 21      


Q ss_pred             ------cccccccccCCCCCHHHHHHH
Q 045393          354 ------VNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       354 ------~d~~~~n~~~~g~t~l~~a~~  374 (580)
                            -|.+..|.-++-.++|++...
T Consensus       340 pvtsslYpL~~iDT~~n~~SvLeivvy  366 (782)
T KOG3676|consen  340 PVTSSLYPLNSIDTIGNENSVLEIVVY  366 (782)
T ss_pred             ccccccccchhcccccchhhhhhhhhc
Confidence                  234444543355678887776

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-20  Score=182.29  Aligned_cols=228  Identities=21%  Similarity=0.245  Sum_probs=181.1

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      .++.|+..|+.+-++.++..+...+..+.+|.|+||.+|.-.+.++|++|++.|++         +++.|..|+||||.|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---------Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---------VNAQDNEGWTPLHAA  113 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---------ccccccccCCcchhh
Confidence            57889999999999999999877788999999999999999999999999999999         999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH
Q 045393           84 ARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (580)
Q Consensus        84 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  163 (580)
                      +.+|+.+++++|+++|++..             ..|.+|..|+..|...-..++...-...-          |.+ +..+
T Consensus       114 ascg~~~i~~~li~~gA~~~-------------avNsdg~~P~dl~e~ea~~~~l~~~~~r~----------gi~-iea~  169 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGANLL-------------AVNSDGNMPYDLAEDEATLDVLETEMARQ----------GID-IEAA  169 (527)
T ss_pred             cccccHHHHHHHHHhhhhhh-------------hccCCCCCccccccCcchhHHHHHHHHHh----------ccc-HHHH
Confidence            99999999999999999854             46677777777765544444443333221          111 1111


Q ss_pred             HHcCc----HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChH
Q 045393          164 IDARL----NDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK  239 (580)
Q Consensus       164 ~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~  239 (580)
                      -....    .++-+++. .+ ........ .|.|.||.|+.+|..+....|++.+.. ++.+|.+|+||||.|+..|..+
T Consensus       170 R~~~e~~ml~D~~q~l~-~G-~~~d~~~~-rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~  245 (527)
T KOG0505|consen  170 RKAEEQTMLDDARQWLN-AG-AELDARHA-RGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQED  245 (527)
T ss_pred             hhhhHHHHHHHHHHHHh-cc-cccccccc-ccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHh
Confidence            11111    13333443 44 34444444 589999999999999999999998877 8999999999999999999999


Q ss_pred             HHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          240 MAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       240 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      +.+.|+++|++. ......|.+|+..|...
T Consensus       246 ~~elL~~~ga~~-d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  246 ACELLVEHGADM-DAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHHHHhhccc-chhhhcCCCCccchhhh
Confidence            999999999988 67788899999888653

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.9e-20  Score=162.90  Aligned_cols=131  Identities=20%  Similarity=0.286  Sum_probs=90.7

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHh------CCCccccccCCCCCHHHHHHHcCC----HHHHHHHhcCcchhhhcc
Q 045393          254 KRDCNGETPLHLAAENGKLKVLKLLINK------YPDAIEIRNNSDRSILHVAAKHGN----WNIVSFILRSPEMENLIN  323 (580)
Q Consensus       254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~n  323 (580)
                      .++..|.||||+|++.|+.++++.|+..      +++ ++.+|..|+||||+|+..|+    .+++++|++.   ++++|
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~---gadin   91 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL---GADIN   91 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc---CCCCC
Confidence            4456677777777777777777776532      244 66777777777777777777    4677777776   34477


Q ss_pred             cccC-CCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393          324 LVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK  397 (580)
Q Consensus       324 ~~d~-~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  397 (580)
                      .+|. +|+||||+|+..++.+++++|+...|++++.+|.  +|+|||++|..       ....++++.|++.++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~--~g~tpL~~A~~-------~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA--DNKSPFELAID-------NEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC--CCCCHHHHHHH-------CCCHHHHHHHHHHHHH
Confidence            7764 7777777777777777777777655777777777  77777777776       3345666777766654

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.8e-19  Score=160.25  Aligned_cols=130  Identities=21%  Similarity=0.294  Sum_probs=113.2

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHh------chhcccccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCccc
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEE------SKRLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPDAIE  287 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~  287 (580)
                      ++.++..|.||||+|++.|+.++++.|+..      +++. +.+|..|.||||+|+..|+    .+++++|++++++ ++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-IN   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CC
Confidence            455678899999999999999999998653      3444 6788899999999999998    5899999999999 78


Q ss_pred             cccC-CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          288 IRNN-SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       288 ~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      .+|. .|+||||+|+.+++.+++++|++..  +.+++.+|.+|.||||+|+..++.++++.|++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQP--GIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            8885 8999999999999999999999741  345889999999999999999999999999865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=160.84  Aligned_cols=139  Identities=20%  Similarity=0.184  Sum_probs=119.5

Q ss_pred             chhcccccCCCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHH---HHHHhcCcchhh
Q 045393          248 SKRLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNI---VSFILRSPEMEN  320 (580)
Q Consensus       248 ~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i---v~~Ll~~~~~~~  320 (580)
                      +.+. +..+.++.+++|.|++.|+.    +++++|.+.+++ ++.+|..|+||||+|+.+|+.+.   +++|++.+   +
T Consensus        10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G---a   84 (166)
T PHA02743         10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG---A   84 (166)
T ss_pred             chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC---C
Confidence            3444 44567888999999999998    566677888887 78899999999999999998664   78999984   5


Q ss_pred             hccccc-CCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          321 LINLVD-RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       321 ~~n~~d-~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      ++|.+| ..|+||||+|+..++.+++++|+.+.|++++.+|.  .|+|||++|..       ....+++++|+++|++..
T Consensus        85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~--~g~tpL~~A~~-------~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY--QHETAYHIAYK-------MRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC--CCCCHHHHHHH-------cCCHHHHHHHHHcCCCCC
Confidence            599998 58999999999999999999999767999999999  99999999998       445688999999999875


Q ss_pred             c
Q 045393          400 L  400 (580)
Q Consensus       400 ~  400 (580)
                      +
T Consensus       156 ~  156 (166)
T PHA02743        156 D  156 (166)
T ss_pred             C
Confidence            5

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=157.37  Aligned_cols=134  Identities=20%  Similarity=0.292  Sum_probs=108.1

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHhch------hcccccCCCCCcHHHHHHHcCcH---HHHHHHHHhCCCcccc
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESK------RLAYKRDCNGETPLHLAAENGKL---KVLKLLINKYPDAIEI  288 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~  288 (580)
                      .+.+|.+|.||||+|++.|+.  ++.+...+.      .....+|..|.||||+|+..|+.   +++++|++.|++ ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            566788899999999999983  333332221      11234688999999999999987   468899999998 788


Q ss_pred             cc-CCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccc
Q 045393          289 RN-NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR  357 (580)
Q Consensus       289 ~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~  357 (580)
                      +| ..|+||||+|+..++.+++++|++..  +.+++.+|..|.||||+|+..++.++++.|+.+ |++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~--g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQP--GVNMEILNYAFKTPYYVACERHDAKMMNILRAK-GAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            87 58999999999999999999999742  345899999999999999999999999999864 66654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.2e-18  Score=163.97  Aligned_cols=156  Identities=17%  Similarity=0.138  Sum_probs=118.5

Q ss_pred             ccccCCCCCh-HHHHHHHcCChHHHHHHHHhchhccccc----CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccc-cC
Q 045393          218 IDRLDWHQRN-PLHYAAASGNVKMAQRLLEESKRLAYKR----DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR-NN  291 (580)
Q Consensus       218 ~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-d~  291 (580)
                      +..+|..|+| +||.|++.|+.+++++|+++|+++ +.+    +..|.||||+|+..|+.+++++|+++|++ ++.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCC
Confidence            3445556655 466667778899999999999887 444    45789999999999999999999999988 7775 45


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHH
Q 045393          292 SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI  371 (580)
Q Consensus       292 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~  371 (580)
                      .|.||||+|+..++.+++++|++.|   ++++.+|..|.||||+|+..++.+++..+.   |..   .+.  .+.+|..+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~G---Adin~kd~~G~TpL~~A~~~~~~~~~~~~~---~~~---~~~--~~~~~~~~  171 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYG---ADINIQTNDMVTPIELALMICNNFLAFMIC---DNE---ISN--FYKHPKKI  171 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHhCChhHHHHhc---CCc---ccc--cccChhhh
Confidence            7899999999999999999999884   458889999999999999888888775554   222   344  66777775


Q ss_pred             HHHHhhCChhhHHHHHHHHHHHhhh
Q 045393          372 AEITRANGKEIQKHLTLKALKTAYA  396 (580)
Q Consensus       372 a~~~~~~~~~~~~~~~~~~L~~~ga  396 (580)
                      ..          ..++.+.|++++.
T Consensus       172 ~~----------n~ei~~~Lish~v  186 (300)
T PHA02884        172 LI----------NFDILKILVSHFI  186 (300)
T ss_pred             hc----------cHHHHHHHHHHHH
Confidence            42          2456667777666

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=5.7e-19  Score=154.87  Aligned_cols=132  Identities=22%  Similarity=0.229  Sum_probs=109.5

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHHhCC------CccccccCCCCCHHHHHHHcCCHH---HHHHHhcCcchhhhcc
Q 045393          253 YKRDCNGETPLHLAAENGKLKVLKLLINKYP------DAIEIRNNSDRSILHVAAKHGNWN---IVSFILRSPEMENLIN  323 (580)
Q Consensus       253 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~------~~~~~~d~~g~t~Lh~A~~~~~~~---iv~~Ll~~~~~~~~~n  323 (580)
                      +.+|..|.||||+|++.|+.  ++++...+.      ..+..+|..|+||||+|+..++.+   ++++|++.+   +++|
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g---adin   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG---ADIN   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC---CCcc
Confidence            55688899999999999984  333332221      124457899999999999999874   688999984   5599


Q ss_pred             ccc-CCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhh
Q 045393          324 LVD-RNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKR  398 (580)
Q Consensus       324 ~~d-~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  398 (580)
                      .+| .+|+||||+|+..++.+++++|+.+.|++++.+|.  .|+|||++|..       ....++++.|++.|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~--~g~tpL~~A~~-------~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY--AFKTPYYVACE-------RHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC--CCCCHHHHHHH-------cCCHHHHHHHHHcCCCC
Confidence            998 49999999999999999999999877999999999  99999999997       45678889999998864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3e-19  Score=159.13  Aligned_cols=134  Identities=28%  Similarity=0.400  Sum_probs=108.3

Q ss_pred             HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393          234 ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL  313 (580)
Q Consensus       234 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  313 (580)
                      +.|+.-.|+.-++......+.-|..|.+|||+||+.|+..+++.|+.+|+. ++..|....||||+|+.+|+.++|+.|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHH
Confidence            334433333334433333467778889999999999999999999999888 7888887889999999999999999999


Q ss_pred             cCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       314 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +.   .+++|+.+..|+||||||+..|+..+.+-|+.. |+.+++-|+  +|.||++-|..
T Consensus        88 ~~---kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk--~g~tpldkakp  142 (448)
T KOG0195|consen   88 SR---KADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNK--KGMTPLDKAKP  142 (448)
T ss_pred             HH---hcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeeccc--CCCCchhhhch
Confidence            87   566899999999999999999998899888865 889999999  99999998865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=6.9e-18  Score=160.57  Aligned_cols=149  Identities=21%  Similarity=0.212  Sum_probs=124.7

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCcccccc----CCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRL----DWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHL  265 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  265 (580)
                      ...++||.|+..++.++++.|++.|.+ ++.+    +..|.||||+|+..++.+++++|+++|+++....+..|.||||.
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~  110 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYI  110 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHH
Confidence            444567777777888888888888875 6665    45899999999999999999999999999843345679999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHH
Q 045393          266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV  345 (580)
Q Consensus       266 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  345 (580)
                      |+..|+.+++++|+++|++ ++.+|..|.||||+|++.++.+++..+...        ..+..+.+|++++   ++.+++
T Consensus       111 Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDN--------EISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCC--------cccccccChhhhh---ccHHHH
Confidence            9999999999999999999 899999999999999999999988666532        2567788999975   467899


Q ss_pred             HHhhcC
Q 045393          346 FTLSRH  351 (580)
Q Consensus       346 ~~Ll~~  351 (580)
                      +.|+.+
T Consensus       179 ~~Lish  184 (300)
T PHA02884        179 KILVSH  184 (300)
T ss_pred             HHHHHH
Confidence            988865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=1.3e-17  Score=137.64  Aligned_cols=144  Identities=20%  Similarity=0.159  Sum_probs=119.3

Q ss_pred             hhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhh
Q 045393           37 VLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFR  116 (580)
Q Consensus        37 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~  116 (580)
                      .+.+|+..+....|+.||+..++        .++.+|.+|.||||-|+.+|+.+||+.|+..|++.+             
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an--------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-------------  124 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN--------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-------------  124 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc--------cccccccccccHHHHHHhcCchHHHHHHHHccCCcc-------------
Confidence            46789999999999999999998        899999999999999999999999999999999876             


Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHH-HHHHHHhcCCCCcCCCCCCCCccHH
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLND-IACFIIDKSPESLNTTRLPDELTLI  195 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~~~~~t~L  195 (580)
                      .+...|+||||-||+..+.+++-+|+++|++++. ......||||+|+...+.. .+.+|+......+..... .+.+|+
T Consensus       125 a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA-~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn-~eeta~  202 (228)
T KOG0512|consen  125 AKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNA-QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN-LEETAF  202 (228)
T ss_pred             cccccCccchhhhhcccchhHHHHHHhccCcccc-cccccchhhHHhhcccchHHHHHHHhhccccChhhhcC-ccchHH
Confidence            4678999999999999999999999999999984 5667789999998877654 445555443333333333 677777


Q ss_pred             HHHHHcCC
Q 045393          196 HFVVMRQN  203 (580)
Q Consensus       196 ~~A~~~~~  203 (580)
                      .+|-+.+-
T Consensus       203 ~iARRT~~  210 (228)
T KOG0512|consen  203 DIARRTSM  210 (228)
T ss_pred             HHHHHhhh
Confidence            77766543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=3.9e-18  Score=152.10  Aligned_cols=137  Identities=25%  Similarity=0.345  Sum_probs=122.2

Q ss_pred             HHHHHHHcCCHHHHHHHhhhc-CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      .++--|++||--.++..++.. ...+..|..|.+|||+||+.|+..+|+.|+.+|+.         ++..|...+||||+
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar---------vn~tnmgddtplhl   73 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR---------VNSTNMGDDTPLHL   73 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc---------cccccCCCCcchhh
Confidence            345567788877777777654 45566888999999999999999999999999999         89999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..||.++|+.|++..+|+|             ..|+.|+|||||||..|...+.+-|+..|+..+ ..++.|.|||..
T Consensus        74 aaahghrdivqkll~~kadvn-------------avnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldk  139 (448)
T KOG0195|consen   74 AAAHGHRDIVQKLLSRKADVN-------------AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDK  139 (448)
T ss_pred             hhhcccHHHHHHHHHHhcccc-------------hhhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhh
Confidence            999999999999999988876             589999999999999999999999999999776 689999999987


Q ss_pred             H
Q 045393          163 A  163 (580)
Q Consensus       163 A  163 (580)
                      |
T Consensus       140 a  140 (448)
T KOG0195|consen  140 A  140 (448)
T ss_pred             h
Confidence            6

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=1.7e-15  Score=154.73  Aligned_cols=188  Identities=21%  Similarity=0.222  Sum_probs=151.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhC--------CccccccCCCCChHHHHHHHc---CChHHHHHHHHhchhcccc----cCC
Q 045393          193 TLIHFVVMRQNYDIMVKILGTN--------KELIDRLDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYK----RDC  257 (580)
Q Consensus       193 t~L~~A~~~~~~~~~~~Ll~~~--------~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~----~~~  257 (580)
                      .++..+...+..+....++...        ....+.+...|.|.||.|.-+   ++.++++.|++.-+...+.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5666676677766666665544        233666677899999999874   4568999999987654332    234


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccc---------cC--------------CCCCHHHHHHHcCCHHHHHHHhc
Q 045393          258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIR---------NN--------------SDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       258 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~---------d~--------------~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      .|+||||+|+.+.+.++|++|++.|+| ++.+         |.              .|+.||-+|+.-++.|++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            699999999999999999999999998 4432         21              47899999999999999999999


Q ss_pred             CcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc--cccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHH
Q 045393          315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN--IRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALK  392 (580)
Q Consensus       315 ~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d--~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~  392 (580)
                      +   ++++|++|.+|||.||..+..-..++...+++. |++  ..++|+  +|.|||.+|+.       ..+.++.+.++
T Consensus       262 ~---gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~--qgLTPLtLAak-------lGk~emf~~il  328 (782)
T KOG3676|consen  262 H---GADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNN--QGLTPLTLAAK-------LGKKEMFQHIL  328 (782)
T ss_pred             c---CCCCCccccCCChHHHHHHHHHHHHHHHHHHhc-CCCcccccccc--CCCChHHHHHH-------hhhHHHHHHHH
Confidence            8   666999999999999999999888899999876 777  889999  99999999998       56667766666


Q ss_pred             Hh
Q 045393          393 TA  394 (580)
Q Consensus       393 ~~  394 (580)
                      +.
T Consensus       329 e~  330 (782)
T KOG3676|consen  329 ER  330 (782)
T ss_pred             Hh
Confidence            65

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=2.7e-16  Score=123.91  Aligned_cols=89  Identities=42%  Similarity=0.631  Sum_probs=63.2

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh
Q 045393          263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS  342 (580)
Q Consensus       263 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  342 (580)
                      ||+|++.|+.+++++|++.+.+ ++.    |+||||+|+.+|+.+++++|++.+   .+++.+|.+|+||||+|+.+|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENG---ADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTT---TCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhc---ccccccCCCCCCHHHHHHHcCCH
Confidence            5777777777777777776665 333    777777777777777777777763   34777777777777777777777


Q ss_pred             hHHHHhhcCccccccccc
Q 045393          343 DVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       343 ~~~~~Ll~~~~~d~~~~n  360 (580)
                      +++++|+++ |++++.+|
T Consensus        73 ~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHc-CCCCCCcC
Confidence            777777765 77777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2e-15  Score=127.50  Aligned_cols=124  Identities=41%  Similarity=0.661  Sum_probs=106.8

Q ss_pred             cCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       221 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      .|.+|.||||.|+..++.+++++|++.+.+. +..+..|.+|+|.|+..++.+++++|++.++. ++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            4567889999999999999999999888776 56778899999999999999999999998876 677788899999999


Q ss_pred             HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      ++.++.+++++|++.+   ..++..|..|.||+|+|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcC---CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999874   347778888999999999998888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=1e-15  Score=120.62  Aligned_cols=86  Identities=29%  Similarity=0.427  Sum_probs=76.0

Q ss_pred             hhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhc
Q 045393           38 LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM  117 (580)
Q Consensus        38 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~  117 (580)
                      ||+|++.|+.+++++|++.+.+         ++.    |+||||+|+..|+.+++++|+++|++++             .
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---------~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-------------~   54 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---------INL----GNTALHYAAENGNLEIVKLLLENGADIN-------------S   54 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---------TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--------------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---------CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-------------c
Confidence            7999999999999999998877         333    8899999999999999999999998876             4


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393          118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus       118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      +|.+|.||||+|+.+|+.+++++|+++|++++
T Consensus        55 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   55 QDKNGNTALHYAAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            77899999999999999999999999998776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=7.5e-15  Score=123.96  Aligned_cols=124  Identities=27%  Similarity=0.377  Sum_probs=103.6

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      .+.+|.||||+|+..|+.+++++|++.+.+         .+.++..|.||||.|+..++.++++.|++.++..+      
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~---------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~------   67 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD---------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN------   67 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC---------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc------
Confidence            456788999999999999999999998887         57788889999999999999999999999886543      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHH
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII  176 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  176 (580)
                             ..+..|.||+|+|++.++.+++++|++++.+.. ..+..+.||++.|...++.+++++|+
T Consensus        68 -------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          68 -------ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                   356788899999999999999999999886555 45677888999988888888888763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=3.7e-14  Score=104.36  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      |.++.+++++|+++-++.....+...+ ....|++|||+|+.+|..+++++|+..|++         ++.+|+.|-|||.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn-~~~ggR~plhyAAD~GQl~ilefli~iGA~---------i~~kDKygITPLL   72 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVN-EIYGGRTPLHYAADYGQLSILEFLISIGAN---------IQDKDKYGITPLL   72 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHH-HHhCCcccchHhhhcchHHHHHHHHHhccc---------cCCccccCCcHHH
Confidence            467889999999999999999884333 445899999999999999999999999999         9999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCccccc
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQ  104 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~  104 (580)
                      .|+..||.++|++|+++|++-..
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccce
Confidence            99999999999999999998653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=5.6e-13  Score=125.63  Aligned_cols=130  Identities=34%  Similarity=0.447  Sum_probs=113.2

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc-----HHHHHHHHHhCC--Ccccccc
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK-----LKVLKLLINKYP--DAIEIRN  290 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~d  290 (580)
                      ....+..+.++++.++..+..+.+++++..+.++ +.++..|.||||+|+..++     .+++++|++.++  +..+.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            4455667889999999999999999999999888 8889999999999999999     899999999999  5577789


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       291 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ..|+||||+|+..|+.+++++|++.+   ++++.++..|.|+++.|+..++.++++.++..
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAG---ADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcC---CCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            99999999999999999999999884   44788889999999999999999999888864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.49  E-value=1.2e-13  Score=101.76  Aligned_cols=105  Identities=24%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCC
Q 045393          262 PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH  341 (580)
Q Consensus       262 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  341 (580)
                      -+.+++++|..+-|+.....+-+ ++..- .|++|||+|+.+|+.+++++|+..   +++++.+|+.|-|||--|+..||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHHHhh
Confidence            45677788888888877777755 33322 678888888888888888888887   44488888888888888888888


Q ss_pred             hhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          342 SDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       342 ~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      .++|++||++ |+|...+..  +|.+.++.+..
T Consensus        80 ~~cVklLL~~-GAdrt~~~P--dG~~~~eate~  109 (117)
T KOG4214|consen   80 RDCVKLLLQN-GADRTIHAP--DGTALIEATEE  109 (117)
T ss_pred             HHHHHHHHHc-CcccceeCC--CchhHHhhccH
Confidence            8888888865 888877777  88887776654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=6.3e-12  Score=118.37  Aligned_cols=125  Identities=31%  Similarity=0.456  Sum_probs=117.9

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC-----hHHHHHHHHhch--hcccccCCCCCcH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN-----VKMAQRLLEESK--RLAYKRDCNGETP  262 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~~~g~tp  262 (580)
                      .+.++++.++..+..+.+..++..+.+ ++.++..|.||||+|+..++     .++++.|++.|+  +....++..|.||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            688999999999999999999999888 59999999999999999999     999999999999  6767889999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393          263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP  316 (580)
Q Consensus       263 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  316 (580)
                      ||+|+..|+.++++.|++.+++ ++.++..|.|+++.|+..++.++++.+++.+
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999 8889999999999999999999999999863

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=3.8e-12  Score=114.18  Aligned_cols=124  Identities=23%  Similarity=0.250  Sum_probs=113.6

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      ....||.-++..++.+....|+..-. .++.+|.+|+++|..|+..|+.++++.|++.|+|++..++..+.||||+|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr-~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVR-QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhh-hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            45678888888999999999888743 48999999999999999999999999999999999888888999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      |+.++.++|++.|+. ....|.-|+|+-.+|+.-|+.++|..+-++
T Consensus        90 Gn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999 888999999999999999999999887655

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2e-12  Score=90.56  Aligned_cols=54  Identities=28%  Similarity=0.397  Sum_probs=46.0

Q ss_pred             CCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHH
Q 045393           34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIM   96 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   96 (580)
                      |.||||+|++.|+.+++++|+++|.+         ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988         8889999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.8e-12  Score=124.09  Aligned_cols=120  Identities=15%  Similarity=0.108  Sum_probs=103.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      .|..|+..|.+|+|+..+.+-.+..+-+..|-|+||-|+-.||.+||++|++.|++         +|..|++|+||||+|
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---------VNa~DSdGWTPLHCA  623 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---------VNAADSDGWTPLHCA  623 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---------ccCccCCCCchhhhh
Confidence            47889999999999999998777777788999999999999999999999999999         999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHH--HcCcHHHHHHHHHc
Q 045393           84 ARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV--TNQHKRVIRILVEK  144 (580)
Q Consensus        84 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~  144 (580)
                      |.+++..+++.|++.|+.+..            .+-.++.|+..-+-  +.|...|.+||..-
T Consensus       624 ASCNnv~~ckqLVe~GaavfA------------sTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  624 ASCNNVPMCKQLVESGAAVFA------------STLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhcCchHHHHHHHhccceEEe------------eecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999999987542            35567778766543  45777888888653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=5.8e-13  Score=93.63  Aligned_cols=50  Identities=40%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             hhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHH
Q 045393          320 NLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA  372 (580)
Q Consensus       320 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a  372 (580)
                      .++|.+|..|+||||+|+.+|+.+++++|+ ..|+|++++|.  +|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~--~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDK--DGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---T--TS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcC--CCCCHHHhC
Confidence            446677777777777777777777777777 45777777777  777777765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.34  E-value=6.9e-12  Score=112.53  Aligned_cols=120  Identities=18%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.++..||.+....|++.-...+.+|+.|.|+|..|+..|+.++|+.|++.|++        .-..++..+.||||+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD--------vN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD--------VNDKQHGTLYTPLMF   85 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC--------cCcccccccccHHHH
Confidence            589999999999999999998776788999999999999999999999999999999        344567789999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE  143 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  143 (580)
                      |+.+|+.++.+.|++.|+...             ..|.-|+|+-..|+--|+.++|..+-+
T Consensus        86 AALSGn~dvcrllldaGa~~~-------------~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMY-------------LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHcCCchHHHHHHhccCccc-------------cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999998764             467889999999999999999987644

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.1e-12  Score=92.30  Aligned_cols=56  Identities=30%  Similarity=0.504  Sum_probs=27.6

Q ss_pred             HHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       278 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      |+++++..++.+|..|+||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~---g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN---GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC---T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC---cCCCCCCcCCCCCHHHhC
Confidence            45666444777888888888888888888888888866   445788888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.7e-12  Score=89.16  Aligned_cols=53  Identities=43%  Similarity=0.551  Sum_probs=22.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          293 DRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       293 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      |+||||+|++.|+.+++++|++.+   .++|.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~---~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG---ADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT---SGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            344444444444444444444442   22444444455555555554444444444

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=4.8e-12  Score=122.47  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             hhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhh
Q 045393           37 VLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFR  116 (580)
Q Consensus        37 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~  116 (580)
                      .|.-|+..|.+|+|+..+.+-.+         +...|..|-|+||-|+..||.+||++|++.|+++|             
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~D---------pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-------------  610 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTD---------PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-------------  610 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcC---------CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-------------
Confidence            35568889999999999988777         78888999999999999999999999999999877             


Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH--HHcCcHHHHHHHHhc
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDIACFIIDK  178 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~  178 (580)
                      ..|.+|+||||+|+.+++..+++.|++.|+-+....-.+++|+..-+  .+.|..++.+||..-
T Consensus       611 a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  611 AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             CccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            58899999999999999999999999999877766666777776543  345677888888653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=5.1e-12  Score=136.05  Aligned_cols=109  Identities=27%  Similarity=0.350  Sum_probs=92.8

Q ss_pred             hHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCH
Q 045393          227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW  306 (580)
Q Consensus       227 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  306 (580)
                      +.|+.|+..|+.+.++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcH
Confidence            5688899999999999999999887 67788999999999999999999999999998 888999999999999999999


Q ss_pred             HHHHHHhcC----cchhhhcccccCCCCcHHHHHH
Q 045393          307 NIVSFILRS----PEMENLINLVDRNGNTPLHLAA  337 (580)
Q Consensus       307 ~iv~~Ll~~----~~~~~~~n~~d~~G~T~Lh~A~  337 (580)
                      +++++|+++    ...++..+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999987    2223456777788888876554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.26  E-value=1.9e-11  Score=131.64  Aligned_cols=106  Identities=25%  Similarity=0.262  Sum_probs=95.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393          193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL  272 (580)
Q Consensus       193 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  272 (580)
                      ..|+.|+..|+.+.++.|++.+.+ ++..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            468899999999999999998866 8999999999999999999999999999999988 78899999999999999999


Q ss_pred             HHHHHHHHh-------CCCccccccCCCCCHHHHHH
Q 045393          273 KVLKLLINK-------YPDAIEIRNNSDRSILHVAA  301 (580)
Q Consensus       273 ~~v~~Ll~~-------~~~~~~~~d~~g~t~Lh~A~  301 (580)
                      +++++|+++       +++ .+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            999999998       666 6677778888866543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.05  E-value=6.9e-10  Score=108.47  Aligned_cols=123  Identities=24%  Similarity=0.316  Sum_probs=110.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      .+++..|+..+|+-.++....+|...-..+++..|.||+|+..|+-|+|+|++++|+.       .+++..|..|+|+||
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-------elld~~de~get~lh  939 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-------ELLDMADETGETALH  939 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-------HHHHHHhhhhhHHHH
Confidence            4678999999998888888777766666899999999999999999999999999998       578889999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK  144 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  144 (580)
                      .|+..++..++++|++.|+...             .+|..|.||-..|-+.|+.+..-||-.+
T Consensus       940 kaa~~~~r~vc~~lvdagasl~-------------ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGASLR-------------KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchhhe-------------ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999998743             5899999999999999999999998654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.74  E-value=4.1e-08  Score=96.38  Aligned_cols=121  Identities=25%  Similarity=0.292  Sum_probs=105.4

Q ss_pred             hhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhc
Q 045393           38 LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM  117 (580)
Q Consensus        38 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~  117 (580)
                      +..|+..++.--++.....|.+         +-.++.+..|.||+|+..|+-++|++++++|+.           +++.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~---------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-----------elld~  929 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS---------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-----------ELLDM  929 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc---------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-----------HHHHH
Confidence            4566777776666777777776         777888899999999999999999999999874           56888


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 045393          118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS  179 (580)
Q Consensus       118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  179 (580)
                      .|+.|+|+||-|+..++..+.++|++.|+.+- ..|..|.||-..|-..|..+++.||-...
T Consensus       930 ~de~get~lhkaa~~~~r~vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  930 ADETGETALHKAACQRNRAVCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HhhhhhHHHHHHHHhcchHHHHHHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999999999999999876 57899999999999999999999987654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.66  E-value=1.4e-08  Score=104.00  Aligned_cols=95  Identities=25%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             HHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCCHHHHHHHcCCHHHHHHHhcCcchh
Q 045393          241 AQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN-NSDRSILHVAAKHGNWNIVSFILRSPEME  319 (580)
Q Consensus       241 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  319 (580)
                      --++-+.+.+..+..|..|+|+||+|+..+..+++++|+++|.+ +..+| +.|+||||-|+.+|+.|++-+|+++|.. 
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc-
Confidence            33444455566677788888888888888888888888888887 55555 4578888888888888888888887543 


Q ss_pred             hhcccccCCCCcHHHHHHhc
Q 045393          320 NLINLVDRNGNTPLHLAAMG  339 (580)
Q Consensus       320 ~~~n~~d~~G~T~Lh~A~~~  339 (580)
                        +..+|++|.+||.+-.+-
T Consensus       112 --L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 --LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             --eEEecccCCCHHHHHhhc
Confidence              777888888888877663

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.64  E-value=1.9e-08  Score=103.13  Aligned_cols=95  Identities=21%  Similarity=0.228  Sum_probs=82.7

Q ss_pred             HHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc
Q 045393          209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI  288 (580)
Q Consensus       209 ~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  288 (580)
                      ++-+.+....+..|..|+|+||+++..+..+++++|+++|.++.-+....|.||||.|..+|++|++-.|+++|.. ..+
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i  114 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRI  114 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEE
Confidence            3444555668889999999999999999999999999999998555455799999999999999999999999988 899


Q ss_pred             ccCCCCCHHHHHHHcC
Q 045393          289 RNNSDRSILHVAAKHG  304 (580)
Q Consensus       289 ~d~~g~t~Lh~A~~~~  304 (580)
                      +|++|..||..-++-.
T Consensus       115 ~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  115 KDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             ecccCCCHHHHHhhcc
Confidence            9999999999888743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.56  E-value=7.6e-08  Score=57.29  Aligned_cols=29  Identities=34%  Similarity=0.401  Sum_probs=27.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCcccc
Q 045393           75 MDETALHIAARIGDRAIVSEIMKYLPAVN  103 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~  103 (580)
                      +|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999998875

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.51  E-value=4e-07  Score=88.33  Aligned_cols=94  Identities=23%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             ccCCCCCh------HHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCC
Q 045393          220 RLDWHQRN------PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD  293 (580)
Q Consensus       220 ~~d~~g~t------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  293 (580)
                      .+|.+|.+      -||..++.|+.+..-.|+..|++.++.-...|.||||.|++.|+.--+++|+-+|+| +...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            34555554      489999999999999999999999777778899999999999999999999999999 89999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHhc
Q 045393          294 RSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       294 ~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      .||+.+|-..||.++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999887665554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.50  E-value=1.6e-07  Score=55.94  Aligned_cols=29  Identities=34%  Similarity=0.579  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393          121 EGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus       121 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      +|+||||+|++.|+.|++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48899999999999999999999998764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.49  E-value=1.3e-07  Score=58.21  Aligned_cols=32  Identities=44%  Similarity=0.663  Sum_probs=21.8

Q ss_pred             CCCcHHHHHHhcCChhHHHHhhcCccccccccc
Q 045393          328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       328 ~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      +|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCC
Confidence            46677777777777777777775 367776665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.49  E-value=1.5e-07  Score=90.77  Aligned_cols=92  Identities=33%  Similarity=0.394  Sum_probs=63.6

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHH
Q 045393          256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHL  335 (580)
Q Consensus       256 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~  335 (580)
                      +.++..++++|++.|.+..++.+.-.+.| ++.+|-+.+|+||.|+..|+.+++++|++..  +.+.+.+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchH
Confidence            33455667777777777777777766776 6777777777777777777777777777653  33466677777777777


Q ss_pred             HHhcCChhHHHHhhc
Q 045393          336 AAMGLHSDVVFTLSR  350 (580)
Q Consensus       336 A~~~~~~~~~~~Ll~  350 (580)
                      |...+|.+++++|.+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            777777777776654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.46  E-value=1.9e-07  Score=90.17  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      .++.|++.||+..++.+.-.+......|.+.+|+||+|+..|+.+++++|++....        .++.+|..|+|||.-|
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv--------~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKV--------DPDPKDRWGRTPLDDA  580 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcC--------CCChhhccCCCcchHh
Confidence            46889999999999999988888888999999999999999999999999998766        6889999999999999


Q ss_pred             HHhCCHHHHHHHHhcCc
Q 045393           84 ARIGDRAIVSEIMKYLP  100 (580)
Q Consensus        84 a~~g~~~~v~~Ll~~~~  100 (580)
                      -..+|.+++++|-+.-.
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            99999999999987643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=6.3e-07  Score=86.99  Aligned_cols=93  Identities=26%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             ccCCCCCc------HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccC
Q 045393          254 KRDCNGET------PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR  327 (580)
Q Consensus       254 ~~~~~g~t------pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~  327 (580)
                      .+|.+|.+      -||..++.|+.+..-.|+..|++.....-..|.||||.|++.|+..-+++|.-.   |+++++.|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY---GAD~~a~d~  198 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY---GADPGAQDS  198 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc---cCCCCCCCC
Confidence            34555554      489999999999999999999995555557899999999999999999999988   556999999


Q ss_pred             CCCcHHHHHHhcCChhHHHHhh
Q 045393          328 NGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       328 ~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      +|.||+.+|-..||.++.+.|+
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHH
Confidence            9999999999999988766554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1.5e-06  Score=85.58  Aligned_cols=91  Identities=22%  Similarity=0.328  Sum_probs=77.6

Q ss_pred             chhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           36 AVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        36 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      -|||+++...+.+-....+.....       ..++.+|..|+||||+|+..|+.+.++.|+.+|+++.            
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~-------~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~------------   82 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS-------LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS------------   82 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh-------ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc------------
Confidence            459999999998877775544322       2478899999999999999999999999999999865            


Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDS  146 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~  146 (580)
                       .+|++|++|||.|+..|+.+++..++.+..
T Consensus        83 -~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   83 -IKNNEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             -ccccccccHHHHHHHcCCHHHHHHHHHHhH
Confidence             689999999999999999999988887654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=8.8e-07  Score=54.41  Aligned_cols=26  Identities=46%  Similarity=0.783  Sum_probs=11.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCC
Q 045393          259 GETPLHLAAENGKLKVLKLLINKYPD  284 (580)
Q Consensus       259 g~tpL~~A~~~g~~~~v~~Ll~~~~~  284 (580)
                      |.||||+|+..|+.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            34444444444444444444444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.26  E-value=2.9e-06  Score=84.13  Aligned_cols=92  Identities=18%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhc----CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCc
Q 045393            3 QELLEVLRHGDEYKIKQLALRQ----DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDET   78 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t   78 (580)
                      ..|..|+...|+..+..||.+|    .+....+.+|.|+||+||+.|+..+.+.|+=.|.+         +..+|..|+|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---------v~~rda~g~t  696 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---------VMARDAHGRT  696 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---------ceecccCCch
Confidence            4689999999999999999886    23344556789999999999999999999999988         8899999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCcccc
Q 045393           79 ALHIAARIGDRAIVSEIMKYLPAVN  103 (580)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~~~~~~  103 (580)
                      +|.+|-+.|.-+++..|+++|....
T Consensus       697 ~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  697 ALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhhHhhcccHHHHHHHHHcCCCcc
Confidence            9999999999999999999997643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=2.1e-06  Score=84.68  Aligned_cols=89  Identities=25%  Similarity=0.325  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhc--CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQ--DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETAL   80 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpL   80 (580)
                      .++|.++...+.+.+...+...  ......|..|+||||.|+..|+.+.++.|+..|++         +..+|..|++||
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---------v~~kN~~gWs~L   92 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---------VSIKNNEGWSPL   92 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---------ccccccccccHH
Confidence            3588999999999998876654  45566889999999999999999999999999998         889999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCc
Q 045393           81 HIAARIGDRAIVSEIMKYLP  100 (580)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~~~  100 (580)
                      |-|+..|+.+++..++.+..
T Consensus        93 ~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   93 HEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             HHHHHcCCHHHHHHHHHHhH
Confidence            99999999999999988653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.25  E-value=2.5e-06  Score=84.53  Aligned_cols=86  Identities=28%  Similarity=0.342  Sum_probs=44.4

Q ss_pred             HHHHHcCChHHHHHHHHhchhc---ccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCH
Q 045393          230 HYAAASGNVKMAQRLLEESKRL---AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW  306 (580)
Q Consensus       230 ~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  306 (580)
                      ..|....++..+-.||.+|...   ....+.+|.|+||+||+.|++.+.++|+-+|.| +..+|.+|+|+|.||-+.|..
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccH
Confidence            3344444455555555554221   112233445555555555555555555555555 555555555555555555555


Q ss_pred             HHHHHHhcCc
Q 045393          307 NIVSFILRSP  316 (580)
Q Consensus       307 ~iv~~Ll~~~  316 (580)
                      +++..|+.+|
T Consensus       708 ec~d~llq~g  717 (749)
T KOG0705|consen  708 ECIDVLLQYG  717 (749)
T ss_pred             HHHHHHHHcC
Confidence            5555555553

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.17  E-value=8.2e-06  Score=85.38  Aligned_cols=127  Identities=16%  Similarity=0.133  Sum_probs=100.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcC----cccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQD----IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETA   79 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tp   79 (580)
                      ....|++.||...++..++...    ..+..|+-|.++|+.|+.+.+.|++++|+++...         .       ..+
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---------~-------gdA   91 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---------E-------GDA   91 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---------c-------chH
Confidence            5678999999999999998753    3566889999999999999999999999997654         1       468


Q ss_pred             HHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393           80 LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      |.+|+..|..+.|+.++.+-......+...+   .-...-..+.|||..||..++.||+++|+++|+...
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d---~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGD---ANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccc---cCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            8899999999999999987654322111000   001123457899999999999999999999998765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.13  E-value=2.5e-05  Score=81.82  Aligned_cols=125  Identities=14%  Similarity=0.101  Sum_probs=96.3

Q ss_pred             CCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhh
Q 045393           34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLES  113 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (580)
                      +..-...|+..|+.-.|+..++....     ..-.++..|.-|+++|+.|..+.+.+++++|+++...            
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-----~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------   87 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-----SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------   87 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-----cccchhccChHhhhceecccccccHHHHHHHhcCccc------------
Confidence            44557789999999999999987654     2234778899999999999999999999999986432            


Q ss_pred             hhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC---------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCc
Q 045393          114 LFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS---------SYINKAYQTPLSIAIDARLNDIACFIIDKSPESL  183 (580)
Q Consensus       114 ~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  183 (580)
                             . ..+|.+|+..|..+.|+.++.+.....         ...-..+.||+.+|+..++.|+++.|++++...+
T Consensus        88 -------~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   88 -------E-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             -------c-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                   1 358899999999999999998754321         1112345689999999999999999998886443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.90  E-value=2.4e-05  Score=73.83  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCch
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDF   59 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   59 (580)
                      .+|..||+.||.+.+++|++.|...+.+|.-.++||.+|+..||.++||.|+++|+-
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            368999999999999999999988899999999999999999999999999999986

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.82  E-value=5e-05  Score=64.96  Aligned_cols=69  Identities=23%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             hcccccCCCCcHHHHHHHhCCHHHHHHHHhcC-cccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 045393           68 LLRQKNLMDETALHIAARIGDRAIVSEIMKYL-PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDS  146 (580)
Q Consensus        68 ~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~  146 (580)
                      .++.+|..|+|||++|+..|+.+.+.+|+.+| +.+             ...|..|.+++.+|-+.|+.++++.|.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-------------gv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-------------GVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccc-------------cccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            37889999999999999999999999999998 443             3578899999999999999999999988754


Q ss_pred             CCC
Q 045393          147 VPS  149 (580)
Q Consensus       147 ~~~  149 (580)
                      +-.
T Consensus        71 ets   73 (223)
T KOG2384|consen   71 ETS   73 (223)
T ss_pred             cCC
Confidence            433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.79  E-value=3.4e-05  Score=72.86  Aligned_cols=58  Identities=16%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             CchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcc
Q 045393           35 NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPA  101 (580)
Q Consensus        35 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  101 (580)
                      .--|.+||+.|+.+.|++|++.|.+         +|++|....+||.+|+..||.++|+.|+++|+-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn---------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN---------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC---------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4458999999999999999999998         999999999999999999999999999999975

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.78  E-value=1.8e-05  Score=84.66  Aligned_cols=128  Identities=20%  Similarity=0.151  Sum_probs=86.3

Q ss_pred             cccCCCCChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393          219 DRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL  297 (580)
Q Consensus       219 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  297 (580)
                      ....-.|++.+|+++..++.-.++.+++- +... ...|.+|...+|+ |..++.+...+++......++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            33455677888888888888888877775 3222 4456666667777 4455566666665554444788888888888


Q ss_pred             HHHHHcCCHHHHHHHhcCcchhh---hcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          298 HVAAKHGNWNIVSFILRSPEMEN---LINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       298 h~A~~~~~~~iv~~Ll~~~~~~~---~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      |+|+.+|+..++..|++.+....   +.+..+-.|.|+-.+|..+|+..+.-+|
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            88888888888888887654432   2333444678888888888776665544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.75  E-value=2.9e-05  Score=83.75  Aligned_cols=79  Identities=28%  Similarity=0.382  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHH
Q 045393          291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALE  370 (580)
Q Consensus       291 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~  370 (580)
                      ..|.|+||.|+.++..-+.++|+++++   ++|..|..|+||||.+...|+...+..|++ +|+++++.+.  +|++|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga---~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~--~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGA---DVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDP--DGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCC---cchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCc--cCcchhh
Confidence            457788888888888888888888844   488888888888888888888888877775 5888888888  8888888


Q ss_pred             HHHHH
Q 045393          371 IAEIT  375 (580)
Q Consensus       371 ~a~~~  375 (580)
                      +|...
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            88764

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.57  E-value=0.00016  Score=61.87  Aligned_cols=68  Identities=19%  Similarity=0.154  Sum_probs=52.8

Q ss_pred             cccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 045393          217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD  284 (580)
Q Consensus       217 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  284 (580)
                      ++|.+|..|+|+++.|+..|+.+.+.+|+.+|.......|..|.+++.+|-+.|..++++.|.+...+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            36777888888888888888888888888888444467778888888888888888888888777544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.57  E-value=6.1e-05  Score=81.35  Aligned_cols=88  Identities=28%  Similarity=0.470  Sum_probs=78.8

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       257 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      ..|.|+||.|+..|..-++++|++.|++ ++.+|..|+||+|.+...|+...+..|+++   +++.++.|.+|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~---~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKR---GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccc---cccccccCccCcchhhHH
Confidence            4688999999999999999999999999 999999999999999999999999999998   455899999999999999


Q ss_pred             HhcCChhHHHHh
Q 045393          337 AMGLHSDVVFTL  348 (580)
Q Consensus       337 ~~~~~~~~~~~L  348 (580)
                      ....+.+++-.+
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            887666665443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.52  E-value=0.00017  Score=77.47  Aligned_cols=129  Identities=20%  Similarity=0.185  Sum_probs=95.5

Q ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHH
Q 045393          186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHL  265 (580)
Q Consensus       186 ~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  265 (580)
                      .....|.+.+|.++..+..-.++.+++.........|.+|.-.+|+++ .+..+..-++........+.+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccch
Confidence            333378899999999988888888888744446667777778888844 4455555555544333347789999999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCccc-----cccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          266 AAENGKLKVLKLLINKYPDAIE-----IRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       266 A~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      |+.+|+..++..|++.+++..-     ..+..|.|+-..|-.+|+..+..+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999987766322     2345688899999999998888888765

>smart00248 ANK ankyrin repeats

Probab=96.19  E-value=0.0075  Score=34.75  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=25.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCccc
Q 045393           75 MDETALHIAARIGDRAIVSEIMKYLPAV  102 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  102 (580)
                      .|.||+|+|+..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.19  E-value=0.0044  Score=61.29  Aligned_cols=66  Identities=15%  Similarity=0.016  Sum_probs=51.3

Q ss_pred             HHHHHHHhcCcchhh---hcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          306 WNIVSFILRSPEMEN---LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       306 ~~iv~~Ll~~~~~~~---~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      .+.+++|.+++..++   .....|..--|+||+|+..|..+++.+||++ |+|+.++|.  .|+||.+++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~--~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDG--AGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhccc--CCCCccccccc
Confidence            567777777744331   2333455567999999999999999999987 699999999  99999998764

>smart00248 ANK ankyrin repeats

Probab=96.15  E-value=0.0095  Score=34.28  Aligned_cols=28  Identities=36%  Similarity=0.605  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393          121 EGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (580)
Q Consensus       121 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  148 (580)
                      .|.||+|+|+..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3678888888888888888888877644

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.89  E-value=0.14  Score=44.35  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 045393          262 PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       262 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      -|..|+..|-...+...+++|.+ ++.      ++|-.|+++++..++.++++
T Consensus       146 hl~~a~~kgll~F~letlkygg~-~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGN-VDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCc-ccH------HHHHHHHHhhHHHHHHHhhc
Confidence            36678888888888888888777 332      77888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.25  E-value=0.026  Score=56.03  Aligned_cols=26  Identities=31%  Similarity=0.194  Sum_probs=13.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCccc
Q 045393           77 ETALHIAARIGDRAIVSEIMKYLPAV  102 (580)
Q Consensus        77 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~  102 (580)
                      -|+||+|+.+|..++|.+||+.|.|+
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp  456 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDP  456 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCc
Confidence            34555555555555555555555443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.13  E-value=0.094  Score=46.77  Aligned_cols=117  Identities=13%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCC----CCcH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLM----DETA   79 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~----g~tp   79 (580)
                      .|-.|+..-|.+.+..+....       .+-.+++-+|..++..+++.+|+.+..-          ...|.-    +.--
T Consensus       156 sledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f~f----------t~~dv~~~~~~~yd  218 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKFNF----------TKQDVASMEKELYD  218 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhcce----------ecchhhhcCcchhh
Confidence            355677777777777776532       2245789999999999999999987753          122211    2223


Q ss_pred             HHHHHH--hCCHHHHHHHHhcC-cccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393           80 LHIAAR--IGDRAIVSEIMKYL-PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (580)
Q Consensus        80 Lh~Aa~--~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  147 (580)
                      +-++..  ..+..++++++++| .++|..-          .+-+.|.|-|.-|+++++.|++..|+++|+.
T Consensus       219 ieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F----------~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  219 IEYLLSEHSASYKVLEYFINRGLVDVNKKF----------QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHhhcCCcHHHHHHHHhccccccchhh----------hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            334433  44678899999988 3443221          2456899999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.95  E-value=0.17  Score=45.17  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             hHHHHHHHHhch-hc--ccccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 045393          238 VKMAQRLLEESK-RL--AYKRDCNGETPLHLAAENGKLKVLKLLINKYP  283 (580)
Q Consensus       238 ~~~v~~Ll~~~~-~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  283 (580)
                      ..++++.+++|- ++  ...+-+.|.|-|.-|.++++.+++..|+++|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            455566666552 11  11233456666666666666666666666655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.56  E-value=0.39  Score=41.74  Aligned_cols=139  Identities=15%  Similarity=0.099  Sum_probs=95.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcC
Q 045393          123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ  202 (580)
Q Consensus       123 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~  202 (580)
                      ...+..|++.+-..+++..-+.....    -...++....||+..+.|+++|+-+.-...       +-.+.+..|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i~-------~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHIY-------NPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCCC-------Cchhhhhhhhhcc
Confidence            34577899999999988877654321    124467788999999999999995544211       3445677888888


Q ss_pred             CHHHHH----HHHhhCCccccccCC--CCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHH
Q 045393          203 NYDIMV----KILGTNKELIDRLDW--HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLK  276 (580)
Q Consensus       203 ~~~~~~----~Ll~~~~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  276 (580)
                      +.++..    .++++... ....|.  --..-|..|+..|-...+...+++|.+..       .+.|..|+.+++..++.
T Consensus       116 DlsLyslGY~l~~~~~~~-~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~  187 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMS-EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILD  187 (192)
T ss_pred             chhHHHHHHHHHHhhccc-ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHH
Confidence            876522    22222111 000010  00123788999999999999999987662       28999999999999999


Q ss_pred             HHHH
Q 045393          277 LLIN  280 (580)
Q Consensus       277 ~Ll~  280 (580)
                      +++.
T Consensus       188 yfi~  191 (192)
T PF03158_consen  188 YFIR  191 (192)
T ss_pred             Hhhc
Confidence            8874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.25  E-value=0.81  Score=34.09  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 045393          124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS  179 (580)
Q Consensus       124 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  179 (580)
                      ..+..|+..|+.|+++.+++.+. +.       ...+..|+...+.+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~~-------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-PD-------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-cH-------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45778888888888888886552 11       35678888888888888888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.88  E-value=12  Score=36.92  Aligned_cols=130  Identities=10%  Similarity=0.055  Sum_probs=69.8

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      .|..|.-.|..+...++.+....+++.-.+      .-..-..|..|.-.+......+..+-...+++.-..        
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~------~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~--------   82 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILP------HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILG--------   82 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHH------hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHH--------
Confidence            566778888888888888888887775221      111234566777777777777766655555543210        


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDIACFI  175 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  175 (580)
                        ...--..+..|.-.+..+...+..+-...+++.  +....-..|..|...+..+......+..+.+
T Consensus        83 --~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i  148 (322)
T cd07920          83 --HVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFI  148 (322)
T ss_pred             --HHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHH
Confidence              000113566676666666666554433333332  1111112344555555555554444443333

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.10  E-value=0.71  Score=34.38  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhc
Q 045393           35 NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKY   98 (580)
Q Consensus        35 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   98 (580)
                      ...+..|+..|+.|+++.+++.+..                ....+..|+...+.+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568999999999999999976533                15679999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.75  E-value=15  Score=36.12  Aligned_cols=253  Identities=8%  Similarity=0.003  Sum_probs=133.8

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcC--CCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC-CCcCCCCCCCCccH
Q 045393          118 TDIEGNTPLHNAVTNQHKRVIRILVEKD--SVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP-ESLNTTRLPDELTL  194 (580)
Q Consensus       118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~t~  194 (580)
                      .|..|.-.+.-+.+.+..+....+++.-  .-..-..|..|...+......+..+-...+++.-. ........+.|...
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            3445555666666665555555444430  00111235556666666666665554444433321 11111112266667


Q ss_pred             HHHHHHcCCHHHHHHHHhhC--CccccccCCCCChHHHHHHHcCChHHHHHHHHhch--hcccccCCCCCcHHHHHHHcC
Q 045393          195 IHFVVMRQNYDIMVKILGTN--KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--RLAYKRDCNGETPLHLAAENG  270 (580)
Q Consensus       195 L~~A~~~~~~~~~~~Ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~tpL~~A~~~g  270 (580)
                      +..+...+..+....+++.-  ....-..|..|...+..+...+..+..+.+++.-.  -.....+..|...+.......
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~  176 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHC  176 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhC
Confidence            77777666654444443321  11122346778888888777776666555554321  111234667877777777665


Q ss_pred             cHHH----HHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh----
Q 045393          271 KLKV----LKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS----  342 (580)
Q Consensus       271 ~~~~----v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~----  342 (580)
                      ..+.    ++.+...-..  -..|..|+..+..+.+.+..+..+.+++.-.....--..+..|...+..+...+..    
T Consensus       177 ~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~  254 (322)
T cd07920         177 SEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERE  254 (322)
T ss_pred             CHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHH
Confidence            5443    3444333222  24578899999999998877655555544211111235778898888888887753    


Q ss_pred             hHHHHhhcCc----ccccccccccCCCCCHHHHHHH
Q 045393          343 DVVFTLSRHK----SVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       343 ~~~~~Ll~~~----~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      .+++.++...    ...--+.|.  .|.-.+.-+..
T Consensus       255 ~ii~~l~~~~~~~~~l~~l~~d~--~Gn~Viq~~l~  288 (322)
T cd07920         255 LIIDEILASGNETSALDTLMKDQ--YGNYVIQTALD  288 (322)
T ss_pred             HHHHHHhcCCCchhHHHHHhCCC--cccHHHHHHHH
Confidence            3444554321    111223444  56555555544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	580
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-06
1uoh_A	226	Human Gankyrin Length = 226		9e-12
1uoh_A	226	Human Gankyrin Length = 226		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-11
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 32/323 (9%)
Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           LHMA R  + +V + +L+ +         + +  K   D+T LH AARIG   +V  +++
Sbjct: 51  LHMAARAGHTEVAKYLLQNK---------AKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
                N   P         +    G+TPLH A    H   +  L+EK++  +    K + 
Sbjct: 102 -----NNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF- 147
Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL 217
           TPL +A       +A  ++++        +  + LT +H  V   N DI VK+L      
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPLHVAVHHNNLDI-VKLLLPRGGS 204
Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
                W+   PLH AA    V++A+ LL+     A      G TPLHLAA+ G  +++ L
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
           L++K  +   + N S  + LH+ A+ G+  +   +++   M   ++   R G TPLH+A+
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVAS 319
Query: 338 -MGLHSDVVFTLSRHKSVNIRAK 359
             G    V F L     VN + K
Sbjct: 320 HYGNIKLVKFLLQHQADVNAKTK 342

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 5/120 (4%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
           R PLH AA +G++++ + LLE    +  K D NG TPLHLAA NG L+V+KLL+    D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           +  ++ + R+ LH+AA++G+  +V  +L   E    +N  D+NG TPLHLAA   H +VV
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  ++ + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEI 371
               +N  D+NG TPLHLAA   H +VV   L     VN + KN     H A  N  LE+
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 372 AEI 374
            ++
Sbjct: 117 VKL 119

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   R PLHYAA  G+ ++ + L+ +   +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
           + G  +++KLLI+K  D +  +++  R+ LH AAK G+  IV  ++        +N  D 
Sbjct: 79  KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
           +G TPL LA    + ++V  L + 
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   R PLH+AA +G+ ++ + L+ +   +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
           ENG  +V+KLLI+K  D +  +++  R+ LH AA++G+  +V  ++        +N  D 
Sbjct: 79  ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
           +G TPL LA    + +VV  L + 
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           D   R PLHYAA +G+ ++ + LL +       +D +G TPLH AAENG  +++KLL++K
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH 341
             D    +++  R+ LH AA++G+  IV  +L         N  D +G TPL LA    +
Sbjct: 93  GADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLAREHGN 148
Query: 342 SDVVFTLSRH 351
            ++V  L + 
Sbjct: 149 EEIVKLLEKQ 158

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  ++ + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               +N  D+NG TPLHLAA   H +VV
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVV 84

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
           +R+PLH AA +G+V +   L++    +    + +  TPL  AAEN  L+ +K LI K   
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLI-KAGA 68
Query: 285 AIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
            ++ ++    + LH+AAK G++ +V ++L + +M+  +N  D  G TP+  A    H D+
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDL 126
Query: 345 V-FTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
           V   LS+   +NIR        H A  +  ++IAEI
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
           +SL   TD +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++I
Sbjct: 31  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K  + +N     +  T +H+   +  ++I V +L  G N    D  D ++   +
Sbjct: 90  VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 144
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  KLL+++   +I I 
Sbjct: 145 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 202
Query: 290 NNSDRSILHVA 300
           N  +++ L VA
Sbjct: 203 NKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 42/159 (26%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ +
Sbjct: 30  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 88
Query: 274 VLKLLINK-----------------------------------YPDAIEIRNNSDRSILH 298
           ++K L+ K                                    PDA   +++ + + +H
Sbjct: 89  IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMH 145
Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
            AA  GN  ++  +L     +   N+ D  GNTPLHLA 
Sbjct: 146 RAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 181

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
           +SL   TD +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++I
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K  + +N     +  T +H+   +  ++I V +L  G N    D  D ++   +
Sbjct: 89  VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  KLL+++   +I I 
Sbjct: 144 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
           N  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 42/159 (26%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 87
Query: 274 VLKLLINK-----------------------------------YPDAIEIRNNSDRSILH 298
           ++K L+ K                                    PDA   +++ + + +H
Sbjct: 88  IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMH 144
Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
            AA  GN  ++  +L     +   N+ D  GNTPLHLA 
Sbjct: 145 RAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 180

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    +  K D +G 
Sbjct: 11  RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA  G L+++++L+    D +  ++    + LH+AA+ G+  IV  +L++     
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
            +N  D+ G TP  LA    H D+   L +
Sbjct: 127 -VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           +D +G TPLHLAA  G L+++++L+    D +  ++    + LH+AA+ G+  IV  +L+
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373
           +      +N  D++G TPLHLAA   H ++V  L +    ++ A++   ++   L I E
Sbjct: 90  AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIRE 144

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
           VK L  N   ++  D   + PLH AA +G+ ++ + LL +       +D +G+TPLHLAA
Sbjct: 20  VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
           ENG  +V+KLL+++  D    +++  ++ LH+AA++G+  +V  +L         N  D 
Sbjct: 79  ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
           +G TPL LA    + +VV  L + 
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    +  K D +G 
Sbjct: 11  RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA  G L+++++L+    D +  ++    + LH+AA+ G+  IV  +L++     
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
            +N  D+ G TP  LA    + D+   L +
Sbjct: 127 -VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
           +SL   TD +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++I
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K    +N     +  T +H+   +  ++I V +L  G N +  D  D      +
Sbjct: 89  VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  K L+ +   +I I 
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
           N  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G  +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDE 87
Query: 274 VLKLLI-----------------------NKYPDAI---------EIRNNSDRSILHVAA 301
           ++K L+                       N++  A+         + +++ D + +H AA
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
             GN  +V  +L     +   N+ D  GNTPLHLA 
Sbjct: 148 AKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
           +SL   TD +  T LH A +  H  ++  L++   VP +  + A  +PL IA  A  ++I
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
              ++ K    +N     +  T +H+   +  ++I V +L  G N +  D  D      +
Sbjct: 89  VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
           H AAA GN+KM   LL   K     +D  G TPLHLA +  +++  K L+ +   +I I 
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
           N  +++ L VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 36/156 (23%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +K L  R D   R  LH+A ++G+ ++ + LL+    +  K D  G +PLH+AA  G+ +
Sbjct: 29  DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 87
Query: 274 VLKLLI-----------------------NKYPDAI---------EIRNNSDRSILHVAA 301
           ++K L+                       N++  A+         + +++ D + +H AA
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
             GN  +V  +L     +   N+ D  GNTPLHLA 
Sbjct: 148 AKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN-- 258
           R   D  V+IL  N   ++  DW    PLH AA +G++++ + LL+      Y  D N  
Sbjct: 23  RAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAW 76
Query: 259 ---GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
              G TPLHLAA+NG L+++++L+    D +  ++    + LH+AA  G+  IV  +L+ 
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
                 +N  D+ G T   ++    + D+   L +
Sbjct: 136 GAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
           LH+AAK G+  IV  +L+       +N  D  G TPLHLAA   H ++V  L +H + ++
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA-DV 106
Query: 357 RAKN-------HSARSNTALEIAEITRANGKEI 382
            AK+       H A  +  LEI E+    G ++
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D NG TPLHLAA NG+L+++++L+    D +   +++  + LH+AA  G+  IV  +L+ 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                 +N  DR G TPLHLAA+    ++V  L +H + ++ A++  A   TA +I+
Sbjct: 95  GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQD--ALGLTAFDIS 145

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA++G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGI 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           TPLHLAA  G L+++++L+    D +   +N   + LH+AAK+G+  IV  +L+
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D +G TPLHLAA NG L+++++L+    D +   + +  + LH+AA  G+  IV  +L+ 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAK 359
                 +N  D +G+TPLHLAA   H ++V  L +H + VN + K
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           +D +G TPLHLAA  G L+++++L+    D +  ++    + LH+AA+ G+  IV  +L+
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           +      +N  D++G TPLHLAA   H ++V  L
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N    +  D + R PLH AAA G++++ + LL     +    D NG 
Sbjct: 11  RAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGT 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA  G L+++++L+ KY   +  ++ +  + L++AA  G+  IV  +L+      
Sbjct: 70  TPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-- 126
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 127 -VNAQDKFGKTAFDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
           AA  G+   +++L+    DA    ++  R+ LH+AA  G+  IV  +LR+      +N V
Sbjct: 9   AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAV 64
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHS-------ARSNTALEIAEITRAN 378
           D NG TPLHLAA   H ++V  L ++ + ++ AK+ +       A     LEI E+   +
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGA-DVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 379 GKEIQ 383
           G ++ 
Sbjct: 124 GADVN 128

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA  G+ ++ + LL+    +   RD +G 
Sbjct: 23  RAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA+NG L+++++L+ KY   +  ++    + LH+AA  G+  IV  +L+      
Sbjct: 82  TPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            D  G TPLHLAA  G  +++++L+    D +  R+    + LH+AA +G+  IV  +L+
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                  +N  D  G TPLHLAA   H ++V  L +H   ++ A++   +  TA +I+
Sbjct: 102 YGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKH-GADVNAQDKFGK--TAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 9/107 (8%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           D +G TPLHLAA  G L+++++L+    D  AI+I  ++    LH+AA  G+  IV  +L
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAK 359
           +       +N VD  G+TPLHLAA+  H ++V  L +H + VN + K
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           D +G TPLHLAA  G L+++++L+    D  AI+I  ++    LH+AA  G+  IV  +L
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +       +N VD  G+TPLHLAA+  H ++V  L +H + ++ A++   +  TA +I+
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D +   PLH AA  G++++ + LL+    +    D +G 
Sbjct: 23  RAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA+ G L+++++L+ KY   +   +    + LH+AA  G+  IV  +L+      
Sbjct: 82  TPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D+    PLH AA  G++++ + LL+    +  K D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA  G L+++++L+    D +   ++   + LH+AAK G+  IV  +L++     
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
            +N  D+ G T   ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           RD  G TPLHLAA  G L+++++L+    D +  +++   + LH+AA+ G+  IV  +L+
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +      +N  D +G TPLHLAA   H ++V  L ++   ++ A++   +  TA +I+
Sbjct: 102 NGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGK--TAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA SG++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           TPLHLAA  G L+++++L+ KY   +   + +  + LH+AA  G+  IV  +L+
Sbjct: 82  TPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D  G TPLHLAA +G L+++++L+    D ++  +    + LH+AA  G+  IV  +L+ 
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                 +N  D  G+TPLHLAA   H ++V  L ++ + ++ A++   +  TA +I+
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D  G TPLHL   NG L+++++L+ KY   +   + S  + LH+AA  G+  IV  +L+ 
Sbjct: 44  DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                 +N +D  G TPLHLAA   H ++V  L ++ + ++ A++   +  TA +I+
Sbjct: 103 GAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           +G TPLH AA+NG  + +K L++K  D +  R+    + LH+AAK+G+  IV  +L    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRA 358
               +N   ++GNTP HLA    H ++V  L ++   VN R+
Sbjct: 67  D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-LHVAAKHGNWNIVSFILRSP 316
           +G +PLH+AA +G+  ++ LL+    +A     N+D+++ LH+A + G++ +V  +L S 
Sbjct: 85  DGSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR 376
              N  +L   +GNTPL  A  G H ++V  L +H   +I A N+  + NTAL  A I +
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH-GASINASNN--KGNTALHEAVIEK 196

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++  D     PLH AA SG++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGY 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
           TPLHLAA  G L+++++L+    D +   ++   + LH+AAK G   IV  +L+      
Sbjct: 82  TPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
            +N  D+ G T   ++    + D+   L +
Sbjct: 139 -VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D  G TPLHLAA +G L+++++L+    D ++  +    + LH+AA  G+  IV  +L++
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                 +N +D +G TPLHLAA   + ++V  L +H + ++ A++   +  TA +I+
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            D +G+TPLHLAA  G L+++++L+    D +   +    + LH+AA +G+  IV  +L+
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +      +N  D  G TPLHLAA   H ++V  L ++   ++ A++   +  TA +I+
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKY-GADVNAQDKFGK--TAFDIS 153

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            D +G TPLHLAA NG L+++++L+    D +   +++  + L +AA  G+  IV  +L+
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +      +N  D  G+TPLHLAAM  H ++V  L ++ + ++ A++   +  TA +I+
Sbjct: 102 NGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGK--TAFDIS 153

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
           D + NTPL  AV  + +R++  L +  + P+ Y NK+ ++ L  A   R  D    +   
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANR--DFGXXVY-- 217
Query: 179 SPESLNTTRLPDEL--------TLIHFVVMRQNYDIMV--KILGTNKELID-----RLD- 222
               LN+T+L  ++        T +  V   +  D +   K+L      +D     R D 
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 223 --WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
             +  R  LHYAA   N  + + L+ E      K+D +G+TP+ LAA+ G+++V+  LI 
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS-PEME 319
           +   ++E  + +D +   +A  + + NIV    R  PE E
Sbjct: 335 QGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 224 HQRNPLHYAAASGNVKMAQRLL-EESKRL------AYKRDCNGETPLHLAAENGKLKVLK 276
           H R  LH+ A++ + + ++ L+  E+K            DC+  TPL LA    + +++ 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
            L     D   I N S+RS LH AA + ++    + L S +++  I  +DRNG T L + 
Sbjct: 184 YLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV 242
Query: 337 AMGLHSDVVFT 347
           A     D V +
Sbjct: 243 AHNEGRDQVAS 253

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI----LHVAAKHGNWNIVSFILR 314
           G TPLHLAA  G L+++++L+    D      N+D S+    LH+AA  G+  +V  +L+
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADV-----NADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +      +N  D NG TPLHLAA   H ++V  L +H + ++ A++   +  TA +I+
Sbjct: 102 NGAD---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
            GN    +  L+ ++    + D +G +PLH A   G+  V+++LI +    I + N  D 
Sbjct: 15  EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 73
Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           + LH+AA HG+ +IV  +L   + +  IN V+ +GN PLH A  
Sbjct: 74  TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
            GN    +  L+ ++    + D +G +PLH A   G+  V+++LI +    I + N  D 
Sbjct: 10  EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 68
Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           + LH+AA HG+ +IV  +L   + +  IN V+ +GN PLH A  
Sbjct: 69  TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL-AYKRDCNG 259
           R   D  V+IL  N   ++  D     PLH AA  G++++ + LL+    + AY  D  G
Sbjct: 23  RAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLG 80
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            TPLHLAA  G L+++++L+    D +  ++++  + LH+AA  G+  IV  +L+
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLK 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           D  G TPLHLAA  G L+++++L+    D +   +    + LH+AA  G+  IV  +L++
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                 +N  D NG TPLHLAA   H ++V  L ++ + ++ A++   +  TA +I+
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           ++  Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 40  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 97
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
           K+   + + +    + LH AA  G + I   +L+    P  +N      R+GNTPL L  
Sbjct: 98  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 151
Query: 338 MG 339
            G
Sbjct: 152 DG 153

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           ++  Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 95
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
           K+   + + +    + LH AA  G + I   +L+    P  +N      R+GNTPL L  
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 149
Query: 338 MG 339
            G
Sbjct: 150 DG 151

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           ++  Q  PLH+AA    V + + LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 42  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 99
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
           K+   + + +    + LH AA  G + I   +L+    P  +N      R+GNTPL L  
Sbjct: 100 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 153
Query: 338 MG 339
            G
Sbjct: 154 DG 155

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           LH+AA +  + + +  + +   +         TPLH A   G L ++  L+ KY     +
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS--DVVF 346
            +    S +H+AA+ G+ +IV++++   +    ++++D+NG TPL  AA   HS      
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Query: 347 TLSRHKSVNIRAKNHSARSNTALEIA 372
            L+ + SVN+  K H    NTAL  A
Sbjct: 162 LLTFNVSVNLGDKYH---KNTALHWA 184

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
           SL    D +G  PLH +V+ Q   +   L+ K ++V    Y + +  TP  IA      +
Sbjct: 27  SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
           +   + D+ P   +  ++ ++ +T +H  V ++ +++   ++  G +  + D+ +   + 
Sbjct: 87  VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           PLH AA+ G++K+ + L    K     +D  G TPL  A   G      LL+ KY    +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
           + +N
Sbjct: 203 LVDN 206

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
           PLH A         Q LL     L  ++D +G  PLH +      ++   L++K      
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
             YPD      +S  +  H+A   GN  +V  +   P   +L N +   G T LHLA   
Sbjct: 65  DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
              +V  F +    SV I+ K      H A S  +L++ E+    GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
           SL    D +G  PLH +V+ Q   +   L+ K ++V    Y + +  TP  IA      +
Sbjct: 27  SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
           +   + D+ P   +  ++ ++ +T +H  V ++ +++   ++  G +  + D+ +   + 
Sbjct: 87  VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           PLH AA+ G++K+ + L    K     +D  G TPL  A   G      LL+ KY    +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
           + +N
Sbjct: 203 LVDN 206

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
           PLH A         Q LL     L  ++D +G  PLH +      ++   L++K      
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
             YPD      +S  +  H+A   GN  +V  +   P   +L N +   G T LHLA   
Sbjct: 65  DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
              +V  F +    SV I+ K      H A S  +L++ E+    GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
           SL    D +G  PLH +V+ Q   +   L+ K ++V    Y + +  TP  IA      +
Sbjct: 27  SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
           +   + D+ P   +  ++ ++ +T +H  V ++ +++   ++  G +  + D+ +   + 
Sbjct: 87  VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           PLH AA+ G++K+ + L    K     +D  G TPL  A   G      LL+ KY    +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
           + +N
Sbjct: 203 LVDN 206

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
           PLH A         Q LL     L  ++D +G  PLH +      ++   L++K      
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
             YPD      +S  +  H+A   GN  +V  +   P   +L N +   G T LHLA   
Sbjct: 65  DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
              +V  F +    SV I+ K      H A S  +L++ E+    GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +   RD  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
           TPLHLAA  G L+++++L+ +Y   +  ++   ++   ++  +GN ++   +
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   +++ +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           A   H  VV  L +H + N+  +NH  + +TA ++A +   N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA-----ASGNVKMAQRLLEE 247
           T +H+ V   N+ ++ ++L +    +D+ +    +P+   A        +++   +L   
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 248 SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
              +  K    G+T L LA  +G++ V+K L+    D + ++++   + L  A +HG+  
Sbjct: 173 GN-INAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKE 230
Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
           I   +L  P  +  I+L DR+G+T L +A     S++   L  +  +NI+
Sbjct: 231 IAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   +++ +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374
           A   H  VV  L +H + N+  +NH  + +TA ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
                 S L +A+  G  +IV  +L   E +  IN+ D NG TPL  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
              +  ++  +  S  +   L +A   R   + I+ H+
Sbjct: 122 -LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
                 S L +A+  G  +IV  +L   E +  IN+ D NG TPL  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
              +  ++  +  S  +   L +A   R   + I+ H+
Sbjct: 122 LA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   +++ +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           A   H  VV  L +H + N+  +NH  + +TA ++A +   N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++ LD     PLH AA  G++++ + LL+      Y  D N E
Sbjct: 23  RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAE 76
Query: 261 -----TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
                TPLHLAA  G L+++++L+    D +  ++   ++   ++  +GN ++   +
Sbjct: 77  DNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   +++ +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
           A   H  VV  L +H + N+  +NH  + +TA ++A +   N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           LH A+  G++   + LL+       K D  G TPLH A  +G LKV++LL+ ++   +  
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINL 324
               + S LH AAK+G+ +IV  +L      N +N+
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
           D  + +H  ++ +   + ++++   K  +  L++    Q+ PLH A  +   ++A+ LL 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRNNSDRSILHVAA 301
                   RD  G TPLHLA E G L  + +L            ++  N +  + LH+A+
Sbjct: 67  AGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 302 KHGNWNIVSFILRSPEMENLINLVDR-NGNTPLHLAAMGLHSDVV 345
            HG   IV  ++    +   +N  +  NG T LHLA    + D+V
Sbjct: 126 IHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQNPDLV 167

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
           D  + +H  ++ +   + ++++   K  +  L++    Q+ PLH A  +   ++A+ LL 
Sbjct: 4   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRNNSDRSILHVAA 301
                   RD  G TPLHLA E G L  + +L            ++  N +  + LH+A+
Sbjct: 64  AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 302 KHGNWNIVSFILRSPEMENLINLVDR-NGNTPLHLA 336
            HG   IV  ++    +   +N  +  NG T LHLA
Sbjct: 123 IHGYLGIVELLV---SLGADVNAQEPCNGRTALHLA 155

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           TPLHLAA  G L+++++L+ +Y   +  ++   ++   ++  +GN ++   + +
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N   ++ +D     PLH AA  G++++ + LL+    +    D  G 
Sbjct: 23  RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           TPLHLAA  G L+++++L+ +Y   +  ++   ++   ++  +GN ++   + +
Sbjct: 82  TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
           LL    PD   +++ +  +++H AA+ G  + +  +L   E +  +N+ D  GN PLHLA
Sbjct: 57  LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374
           A   H  VV  L +H + N+  +NH  + +TA ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 69  LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHN 128
           + Q+  M ETALHIAA   +      +M+  P   ++   P+   L+     EG T LH 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAP---ELVFEPMTSELY-----EGQTALHI 81
Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAY------------QTPLSIAIDARLNDIACFII 176
           AV NQ+  ++R L+ + +  S+    +             + PLS A      +I   +I
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 177 DKSPESLNTTRLPDEL--TLIHFVVMRQN-------YDIMVKILGTNKELIDRLDWHQRN 227
           +   +     R  D L  T++H ++++ N       Y++++   G +   +  L+    N
Sbjct: 142 EHGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH--LKSLELVPNN 195
Query: 228 ----PLHYAAASGNVKMAQRLLEESK 249
               P   A   GN+ M Q L+++ K
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHLMQKRK 221

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
           R   D  V+IL  N       DW   +PLH AA  G+    + LL    R    RD   +
Sbjct: 11  RAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTK 65
Query: 261 ---TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
              TPLH+AA  G   ++++L+    D +  ++    + LH A +H +  +V  +++
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
           +  D  G +PLHLAA+ G     ++L+ +   + + R   DR+ LH+AA  G+ NIV  +
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 313 LRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           L+       +N  D    T LH A    H +VV
Sbjct: 87  LKHGAD---VNAKDMLKMTALHWATEHNHQEVV 116

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 224 HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
           ++++ L  AA SGN +    LL       +  D    TPLHLAA   ++++++LL+    
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 284 DAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSD 343
           D +  ++      LH A  +G++ +   +L+       +N +D    TPLH AA     +
Sbjct: 83  D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVE 138
Query: 344 VVFTLSRHKS----VNIRAKN 360
           V   L  H +    VN   K+
Sbjct: 139 VCSLLLSHGADPTLVNCHGKS 159

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
           +D NG TPLHLAA NG L+V+KLL+    D +  ++   ++   ++  +GN ++   +
Sbjct: 35  KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	580
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	8e-23
2pnn_A	273	Transient receptor potential cation channel subfa	7e-05
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
2rfa_A	232	Transient receptor potential cation channel subfa	7e-22
2rfa_A	232	Transient receptor potential cation channel subfa	9e-22
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
2etb_A	256	Transient receptor potential cation channel subfam	5e-21
2etb_A	256	Transient receptor potential cation channel subfam	1e-20
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	5e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  152 bits (386), Expect = 9e-41
 Identities = 91/375 (24%), Positives = 149/375 (39%), Gaps = 64/375 (17%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
               LH A R  +  +++ +L          + +          T LHIAAR G      
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLE---------NNANPNLATTAGHTPLHIAAREGHV---- 126

Query: 94  EIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
           E +  L     +                   +G TPLH A      RV  +L+E+D+ P+
Sbjct: 127 ETVLALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 150 SYINKAYQTPLSIAIDARLNDIACFIIDK--SPESLNTTRLPDELTLIHFVVMRQNYDIM 207
           +   K   TPL +A+     DI   ++ +  SP S       +  T +H    +   ++ 
Sbjct: 174 A-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTPLHIAAKQNQVEV- 227

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA--YKRDCNGETP 262
            + L   G +             PLH AA  G+ +M   LL +    A     + +G TP
Sbjct: 228 ARSLLQYGGSANAESVQGV---TPLHLAAQEGHAEMVALLLSKQ---ANGNLGNKSGLTP 281

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN-- 320
           LHL A+ G + V  +LI      ++       + LHVA+ +GN  +V F+L     ++  
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQA 335

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKNHSARSNTALEIAEITRANG 379
            +N   + G +PLH AA   H+D+V  L ++  S N  + +      T L IA   R   
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD----GTTPLAIA--KRLGY 389

Query: 380 KEIQKHLTLKALKTA 394
             +   L +   +T+
Sbjct: 390 ISVTDVLKVVTDETS 404

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (370), Expect = 2e-38
 Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 58/319 (18%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            T LH+A+ +G       I+K L     + N              ++++  TPLH A   
Sbjct: 15  LTPLHVASFMGHL----PIVKNLLQRGASPNV-------------SNVKVETPLHMAARA 57

Query: 133 QHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDK--SPESLNT 185
            H  V + L++  +     +N      QTPL  A  AR+   ++   +++   +P    T
Sbjct: 58  GHTEVAKYLLQNKA----KVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATT 111

Query: 186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                  T +H      + +  V  L   +     +      PLH AA  G V++A+ LL
Sbjct: 112 ----AGHTPLHIAAREGHVET-VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 246 EESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303
           E     A+      NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK 
Sbjct: 167 ERD---AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQ 222

Query: 304 GNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
               +   +L     +     N     G TPLHLAA   H+++V   LS+  + N+  K+
Sbjct: 223 NQVEVARSLL-----QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

Query: 361 -----HSARSNTALEIAEI 374
                H       + +A++
Sbjct: 278 GLTPLHLVAQEGHVPVADV 296

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (343), Expect = 7e-35
 Identities = 80/367 (21%), Positives = 132/367 (35%), Gaps = 97/367 (26%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARIG 87
               LHMA R  + +V +                LL+       K   D+T LH AARIG
Sbjct: 47  VETPLHMAARAGHTEVAKY---------------LLQNKAKVNAKAKDDQTPLHCAARIG 91

Query: 88  DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147
              +V  +++     N             +    G+TPLH A    H   +  L+EK++ 
Sbjct: 92  HTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHVETVLALLEKEAS 138

Query: 148 PSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIM 207
            +  + K   TPL +A                                     +     +
Sbjct: 139 QAC-MTKKGFTPLHVAA------------------------------------KYGKVRV 161

Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETP 262
            ++L       +    +   PLH A    N+ + + LL       S         NG TP
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP------AWNGYTP 215

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN-- 320
           LH+AA+  +++V + L+          +    + LH+AA+ G+  +V+ +L         
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLL-----SKQA 269

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKNHSARSNTALEIAEITRANG 379
             NL +++G TPLHL A   H  V   L +H   V+   +       T L +A  +    
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG----YTPLHVA--SHYGN 323

Query: 380 KEIQKHL 386
            ++ K L
Sbjct: 324 IKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (321), Expect = 7e-32
 Identities = 69/272 (25%), Positives = 105/272 (38%), Gaps = 53/272 (19%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
               G TPLH A    H  +++ L+++ + P+   N   +TPL +A  A   ++A +++ 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
                                                     + D     PLH AA  G+
Sbjct: 69  N---------------------------------KAKVNAKAKDDQ---TPLHCAARIGH 92

Query: 238 VKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
             M + LLE     A        G TPLH+AA  G ++ +  L+ K             +
Sbjct: 93  TNMVKLLLE---NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFT 148

Query: 296 ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSV 354
            LHVAAK+G   +   +L   E +   N   +NG TPLH+A    + D+V   L R  S 
Sbjct: 149 PLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 355 NIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           +  A N      T L IA   + N  E+ + L
Sbjct: 206 HSPAWN----GYTPLHIA--AKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  124 bits (314), Expect = 5e-31
 Identities = 51/266 (19%), Positives = 100/266 (37%), Gaps = 31/266 (11%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            T LH+A    +  IV    K L     + +                  G TPLH A   
Sbjct: 180 LTPLHVAVHHNNLDIV----KLLLPRGGSPH-------------SPAWNGYTPLHIAAKQ 222

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK--SPESLNTTRLPD 190
               V R L++     ++  +    TPL +A      ++   ++ K  +    N      
Sbjct: 223 NQVEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK----S 277

Query: 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
            LT +H V    +  +   +L  +  ++D        PLH A+  GN+K+ + LL+    
Sbjct: 278 GLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310
           +   +   G +PLH AA+ G   ++ LL+          ++   + L +A + G  ++  
Sbjct: 337 VN-AKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTD 394

Query: 311 FILRSPEMENLINLVDRNGNTPLHLA 336
            +    +  + + + D++  +     
Sbjct: 395 VLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  104 bits (261), Expect = 5e-24
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 25/170 (14%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKL 272
                     PLH A+  G++ + + LL+              +   ETPLH+AA  G  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHT 60

Query: 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENL--INLVDRNGN 330
           +V K L+      +  +   D++ LH AA+ G+ N+V  +L     EN    NL    G+
Sbjct: 61  EVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLL-----ENNANPNLATTAGH 114

Query: 331 TPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
           TPLH+AA   H + V   L +  S     K      H A     + +AE+
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKE 381
                 +G TPLH+A+   H  +V  L +    +    N   +  T L +A   RA   E
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRG-ASPNVSN--VKVETPLHMA--ARAGHTE 61

Query: 382 IQKHL 386
           + K+L
Sbjct: 62  VAKYL 66

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (331), Expect = 2e-34
 Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 41/290 (14%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFII 176
            +E N  L  AV N+   +++ L+E  +  +    +   TPL  A   +++  DI   ++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLL 59

Query: 177 DK--SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHY 231
                P         +  T      +  +  + +K+    G +    D   +        
Sbjct: 60  RHGADPVLRKK----NGATPFLLAAIAGSVKL-LKLFLSKGADVNECDFYGF---TAFME 111

Query: 232 AAASGNVKMAQRLLE---------ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
           AA  G VK  + L +         ++K    +    G T L  AAE G ++VLK+L+++ 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLA 336
              +   +N  R+ L  A    + + V  I        L+      N+    G TPL LA
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAI-----THLLLDHGADVNVRGERGKTPLILA 226

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
               H  +V  L   + + I   +   +  TAL +A       K+I + L
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGK--TALLLA--VELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 99.1 bits (248), Expect = 2e-23
 Identities = 47/314 (14%), Positives = 97/314 (30%), Gaps = 79/314 (25%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQ------QDFIALRLHYSLLRQKNLMDETALHIAARIG 87
            N +L  AV+  +  +++++L        Q+                   T LH A ++ 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE--------------EEGGWTPLHNAVQMS 50

Query: 88  DRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
              IV    + L                          G TP   A      +++++ + 
Sbjct: 51  REDIV----ELLLRHGADPVL-------------RKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 144 KDSVPSSYINKAY---QTPLSIAIDARLNDIACFIIDK--------SPESLNTTRLPDEL 192
           K +     +N+      T    A          F+  +          +           
Sbjct: 94  KGA----DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 193 TLIHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVK----MAQRL 244
           T +     + + ++ +KIL    G +    D +     N L +A  S +      +   L
Sbjct: 150 TALMDAAEKGHVEV-LKILLDEMGADVNACDNMGR---NALIHALLSSDDSDVEAITHLL 205

Query: 245 LE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV 299
           L+       +         G+TPL LA E   L +++ L+ +    I   ++  ++ L +
Sbjct: 206 LDHGADVNVR------GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

Query: 300 AAKHGNWNIVSFIL 313
           A +     I   + 
Sbjct: 260 AVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.1 bits (217), Expect = 3e-19
 Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 69/278 (24%)

Query: 33  GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARI 86
           GG   LH AV+   + ++                 LLR       +     T   +AA  
Sbjct: 38  GGWTPLHNAVQMSREDIVEL---------------LLRHGADPVLRKKNGATPFLLAAIA 82

Query: 87  GDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILV 142
           G      +++K   +    VN+              D  G T    A      + ++ L 
Sbjct: 83  GSV----KLLKLFLSKGADVNE-------------CDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 143 E---------KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE-- 191
           +         K       + K   T L  A +    ++   ++D+    +N     D   
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA---CDNMG 182

Query: 192 LTLIHFVVMRQNYDI---MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
              +   ++  +      +  +L   G +  +          PL  A    ++ + QRLL
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK---TPLILAVEKKHLGLVQRLL 239

Query: 246 EESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINK 281
              +        D +G+T L LA E    K+ +LL  +
Sbjct: 240 --EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (333), Expect = 4e-34
 Identities = 62/344 (18%), Positives = 123/344 (35%), Gaps = 60/344 (17%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           L  A R  N++ +  +L   +              +    T LH+AA      IV  +++
Sbjct: 28  LLEAARSGNEEKLMALLTPLN--------VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN---K 154
           +   V+               D  G  PLHNA +  H  V  +L++      + +N    
Sbjct: 80  HGADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDL 122

Query: 155 AYQTPLSIAIDARLNDIACFIIDK--SPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG 212
              TPL  A      ++   ++     P  +N        + +      +  + +     
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC----HGKSAVDMAPTPELRERL----- 173

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG-- 270
                         + L  AA   ++   ++ L   + + +K+  + ET LH A  +   
Sbjct: 174 --TYEFK------GHSLLQAAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVASLHP 224

Query: 271 -KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF-ILRSPEMENLINLVDRN 328
            + +V +LL+ K  + +  +N    + LHVAA+  + +++        +    +N +D  
Sbjct: 225 KRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSL 279

Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           G T LH AA+  H      L  +   +    +      TA ++ 
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGF--TAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (312), Expect = 2e-31
 Identities = 62/359 (17%), Positives = 116/359 (32%), Gaps = 90/359 (25%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARIG 87
            +  LH+A  +   ++++                LL+       K+      LH A   G
Sbjct: 58  KSTPLHLAAGYNRVRIVQL---------------LLQHGADVHAKDKGGLVPLHNACSYG 102

Query: 88  DRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
                 E+ + L      VN               D+   TPLH A +     V  +L+ 
Sbjct: 103 HY----EVTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 144 KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN 203
             + P+  +N   ++ + +A    L +   +                  +L+       +
Sbjct: 146 HGADPTL-VNCHGKSAVDMAPTPELRERLTYEFKGH-------------SLLQ-AAREAD 190

Query: 204 YDIMVKILGTNKELIDRLDWHQRNPLHYAAASG---NVKMAQRLLE-----ESKRLAYKR 255
              + K L        +        LH A AS      ++A+ LL        K      
Sbjct: 191 LAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK------ 243

Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
           + +  TPLH+AAE     V+++L       +   ++  ++ LH AA  G+      +L  
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLL-- 300

Query: 316 PEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
                    +++   G T   +     +  V   LS  +S  +R  +     +  L  A
Sbjct: 301 ---SYGSDPSIISLQGFTAAQMG----NEAVQQILS--ESTPMRTSD----VDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (286), Expect = 8e-28
 Identities = 56/318 (17%), Positives = 102/318 (32%), Gaps = 87/318 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
                +  L  AAR G+     ++M  L       +              +D   +TPLH
Sbjct: 20  TGEYKKDELLEAARSGNE---EKLMALLTPLNVNCHA-------------SDGRKSTPLH 63

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187
            A      R++++L++  +   +  +K    PL  A                        
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNAC----------------------- 99

Query: 188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
                           +  + ++L  +   ++ +D  Q  PLH AA+   V++   LL  
Sbjct: 100 -------------SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 248 SKRLA--YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
               A     +C+G++ + +A      + L      +              L  AA+  +
Sbjct: 147 G---ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------------LLQAAREAD 190

Query: 306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS---DVVFTLSRHK-SVNIRAKN- 360
              V   L     E +     ++  T LH A   LH     V   L R   +VN + K+ 
Sbjct: 191 LAKVKKTLAL---EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247

Query: 361 ----HSARSNTALEIAEI 374
               H A      ++ E+
Sbjct: 248 MTPLHVAAERAHNDVMEV 265

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (265), Expect = 5e-25
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 29/205 (14%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
            +   +       N + ++ +L          D  +  PLH AA    V++ Q LL+   
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ--- 79

Query: 250 RLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
             A    +D  G  PLH A   G  +V +LL+      +   +    + LH AA      
Sbjct: 80  HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVE 138

Query: 308 IVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARS 365
           + S +L      +     LV+ +G + + +A      + +    +               
Sbjct: 139 VCSLLL-----SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------- 179

Query: 366 NTALEIAEITRANGKEIQKHLTLKA 390
           ++ L+ A    A+  +++K L L+ 
Sbjct: 180 HSLLQAA--READLAKVKKTLALEI 202

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (261), Expect = 2e-24
 Identities = 48/282 (17%), Positives = 87/282 (30%), Gaps = 70/282 (24%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLH 127
            +L   T LH AA         E+   L                       +  G + + 
Sbjct: 120 MDLWQFTPLHEAASKNRV----EVCSLLLSHGADPTL-------------VNCHGKSAVD 162

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII-----DKSPES 182
            A T + +  +    +              + L  A +A L  +   +       K P+ 
Sbjct: 163 MAPTPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEIINFKQPQ- 209

Query: 183 LNTTRLPDELTLIHFVVMRQNYDI--MVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                     T +H  V   +     + ++L   G N   ++  +     PLH AA   +
Sbjct: 210 -------SHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAERAH 259

Query: 238 VKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
             + + L +     A     D  G+T LH AA  G L+  +LL++   D   I +    +
Sbjct: 260 NDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFT 315

Query: 296 ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
              +  +      V  IL          +   + +  L  A+
Sbjct: 316 AAQMGNE-----AVQQIL-----SESTPMRTSDVDYRLLEAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 15/172 (8%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
                 ++++ L  AA SGN +    LL       +  D    TPLHLAA   ++++++L
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHL 335
           L+    D +  ++      LH A  +G++ +   +L     ++   +N +D    TPLH 
Sbjct: 77  LLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLL-----KHGACVNAMDLWQFTPLHE 130

Query: 336 AAMGLHSDVVFTLSRHKS-VNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           AA     +V   L  H +   +   +      +A+++A       +E   + 
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCH----GKSAVDMA--PTPELRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.9 bits (206), Expect = 2e-17
 Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 61/247 (24%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
            N   ++A+ +A     R    E + Y                      +G++ L  A  
Sbjct: 153 VNCHGKSAVDMAPTPELR----ERLTYE--------------------FKGHSLLQAARE 188

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID---ARLNDIACFIIDK--SPESLNTT 186
               +V + L  +         ++++T L  A+     +   +A  ++ K  +    N  
Sbjct: 189 ADLAKVKKTLALEIINFKQ--PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK- 245

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
              D +T +H    R + D+ +++L   G     ++ LD   +  LH AA +G+++  + 
Sbjct: 246 ---DFMTPLHVAAERAHNDV-MEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRL 298

Query: 244 LLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILH 298
           LL                  G T   +  E  +      ++++    +   +   R  L 
Sbjct: 299 LLSYGSDPSII------SLQGFTAAQMGNEAVQQ-----ILSESTP-MRTSDVDYR--LL 344

Query: 299 VAAKHGN 305
            A+K G+
Sbjct: 345 EASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 8e-16
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 14/144 (9%)

Query: 239 KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILH 298
           K A  L + S +     +   +  L  A    + K++ LL     +     +    + LH
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLH 63

Query: 299 VAAKHGNWNIVSFILRSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVN 355
           +AA +    IV  +L     ++   ++  D+ G  PLH A    H +V   L +H   VN
Sbjct: 64  LAAGYNRVRIVQLLL-----QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 356 IRAKN-----HSARSNTALEIAEI 374
                     H A S   +E+  +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSL 142

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 6e-10
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 75/242 (30%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQ-DFIALRLHYSLLRQKNLMDETALHIAARIGDRAIV 92
           G+++L  A R  +   +++ L  +               +    ETALH A         
Sbjct: 179 GHSLLQ-AAREADLAKVKKTLALEIINFK----------QPQSHETALHCAVASLHPKRK 227

Query: 93  SEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
            ++ + L      VN               + +  TPLH A    H  V+ +L +  +  
Sbjct: 228 -QVAELLLRKGANVN-------------EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMV 208
           ++ ++   QT L  A                                        +    
Sbjct: 274 NA-LDSLGQTALHRAA------------------------------------LAGHLQTC 296

Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE 268
           ++L +       +                 +  Q++L ES      R  + +  L  A++
Sbjct: 297 RLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSES---TPMRTSDVDYRLLEASK 348

Query: 269 NG 270
            G
Sbjct: 349 AG 350

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (323), Expect = 2e-33
 Identities = 47/317 (14%), Positives = 94/317 (29%), Gaps = 71/317 (22%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL-------PAVNQVGPAPVLESLFRMTDIEGNTPLHNA 129
           +TALH+A            + +L         ++             + +  G T LH A
Sbjct: 10  DTALHLAVIHQHE----PFLDFLLGFSAGHEYLD-------------LQNDLGQTALHLA 52

Query: 130 VTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDKSPESLN 184
                   +  L    +     +  A     T L +A   R+     AC ++   P   +
Sbjct: 53  AILGEASTVEKLYAAGA----GVLVAERGGHTALHLA--CRVRAHTCACVLLQPRPS--H 104

Query: 185 TTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
                D                            D        P    +        +  
Sbjct: 105 PRDASDTYLTQS---------------------QDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 245 LEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
            E+ +      + +G TPLH+A  +   ++++LL +   D  +      R+ LH+A +  
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 305 NWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN- 360
             +++  +L     +           G TPL  A +  +  +   L  H         + 
Sbjct: 204 AASVLELLL-----KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 361 ----HSARSNTALEIAE 373
                S+ S++  +  +
Sbjct: 259 LSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (318), Expect = 9e-33
 Identities = 54/322 (16%), Positives = 96/322 (29%), Gaps = 66/322 (20%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G+  LH+AV  +++  + + L     +     +  L  +N + +TALH+AA +G+     
Sbjct: 9   GDTALHLAVIHQHEPFL-DFL-----LGFSAGHEYLDLQNDLGQTALHLAAILGEA---- 58

Query: 94  EIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
             ++ L      V              + +  G+T LH A   +      +L++      
Sbjct: 59  STVEKLYAAGAGVL-------------VAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 150 SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVK 209
              +  Y    S                                           +    
Sbjct: 106 RDASDTY-LTQSQDCTPD----------------------TSHAPAAVDSQPNPENEEEP 142

Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269
                +  ++  ++    PLH A    + +M + L +    L       G TPLHLA E 
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------N 323
               VL+LL+    D    R    R+ L  A    N  +            L        
Sbjct: 203 QAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARL---------LRAHGAPEP 252

Query: 324 LVDRNGNTPLHLAAMGLHSDVV 345
               +  +P   +     SD  
Sbjct: 253 EDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 40/263 (15%), Positives = 76/263 (28%), Gaps = 41/263 (15%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARIG 87
           G   LH+A        + +               L               TALH+A R+ 
Sbjct: 45  GQTALHLAAILGEASTVEK---------------LYAAGAGVLVAERGGHTALHLACRVR 89

Query: 88  DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLH-NAVTNQHKRVIRILVEKDS 146
                  +++  P+  +      L      T    + P   ++  N          +   
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 147 VPSSYINKAYQTPLSIAIDARLN--DIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNY 204
              +  N    TPL +A        ++   + D   + LN        T +H  V  Q  
Sbjct: 150 QLEA-ENYDGHTPLHVA--VIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAA 205

Query: 205 DIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA--YKRDCNG 259
            + +++L   G +        +  R PL  A    N  +A+ L       A   +   + 
Sbjct: 206 SV-LELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDK 258

Query: 260 ETPLHLAAENGKLKVLKLLINKY 282
            +P   +  +          ++Y
Sbjct: 259 LSPCSSSGSDSDSDNRDEG-DEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
                    + LH+A  H +   + F+L        ++L +  G T LHLAA+   +  V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 346 FTLSRHK-SVNIRAKN-----HSARSNTALEIAEI 374
             L      V +  +      H A    A   A +
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH--KSVNIRAKNHSARSNTALEIAEITRAN 378
           +   V  +G+T LHLA +  H   +  L         +  +N   +  TAL +A      
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ--TALHLA--AILG 56

Query: 379 GKEIQKHL 386
                + L
Sbjct: 57  EASTVEKL 64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  129 bits (326), Expect = 4e-33
 Identities = 48/333 (14%), Positives = 93/333 (27%), Gaps = 60/333 (18%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLH 127
           +N    TALH+A + G      +  KYL       +                  G  P+H
Sbjct: 49  QNRFGCTALHLACKFGCV----DTAKYLASVGEVHS---------------LWHGQKPIH 89

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187
            AV      ++  LV           +  Q P S+  +    ++                
Sbjct: 90  LAVMANKTDLVVALV-------EGAKERGQMPESLLNECDEREVNEIGSHVKHC------ 136

Query: 188 LPDELTLIHFVVMRQNYDI-MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                T +H+ V      + M+KIL          D     PL  A    N +    +++
Sbjct: 137 --KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 247 ESKRLA----YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
                +       +  G + LH A       V    +    D + + +N     L+++ +
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVR 253

Query: 303 HGNWNIVSFILRSPEMENL----------INLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
                +   +L+  ++  +          +          +  AA     +V+  L    
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 353 -SVNIRAKN-----HSARSNTALEIAEITRANG 379
             V              +   A  +  +  A  
Sbjct: 314 DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 5e-33
 Identities = 44/319 (13%), Positives = 99/319 (31%), Gaps = 85/319 (26%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
              +H+AAR G      + ++ L     +                 +  G T LH A   
Sbjct: 21  MEKIHVAARKGQT----DEVRRLIETGVSPTI-------------QNRFGCTALHLACKF 63

Query: 133 QHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191
                 + L     V     +  + Q P+ +A+ A   D+   +++              
Sbjct: 64  GCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEG------------- 106

Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
                                  +          + P          ++ +         
Sbjct: 107 --------------------AKERG---------QMPESLLNECDEREVNEIGSHV---- 133

Query: 252 AYKRDCNGETPLHLAAENGK--LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
              + C G+T LH     G   L+++K+L+         ++ +D + L  A +  N   +
Sbjct: 134 ---KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREAL 189

Query: 310 SFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNT 367
             ++ +   ++   ++  ++ GN+ LH A +    DV         +++  +++      
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHT--V 246

Query: 368 ALEIAEITRANGKEIQKHL 386
            L ++   RA    + K L
Sbjct: 247 PLYLS--VRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 3e-31
 Identities = 45/364 (12%), Positives = 94/364 (25%), Gaps = 107/364 (29%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G   +H+AV      ++                 L+       +    +     +R    
Sbjct: 84  GQKPIHLAVMANKTDLVVA---------------LVEGAKERGQMPESLLNECDER---- 124

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT--NQHKRVIRILVEKDSVPSSY 151
           E+ +    V                  +G T LH  V    ++  +I+ILV+  +     
Sbjct: 125 EVNEIGSHVK---------------HCKGQTALHWCVGLGPEYLEMIKILVQLGA----S 165

Query: 152 INKAY---QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMV 208
                   +TPL  A++ R  +    ++D  P                            
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS------------------------- 200

Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPL 263
                  +  ++      + LH+A       +A R +E       +      D     PL
Sbjct: 201 ---SLRLDYANKQGN---SHLHWAILINWEDVAMRFVEMGIDVNME------DNEHTVPL 248

Query: 264 HLAAENGKLKVLKLLINKYPDA------------IEIRNNSDRSILHVAAKHGNWNIVSF 311
           +L+     + + K L+ K                +          +  AA      ++  
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308

Query: 312 ILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTAL 369
           +      E    +      G              V        S  +R ++ S     + 
Sbjct: 309 LQ-----EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRA--RSS 360

Query: 370 EIAE 373
            +++
Sbjct: 361 AVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (264), Expect = 7e-25
 Identities = 40/276 (14%), Positives = 79/276 (28%), Gaps = 68/276 (24%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
           +D E    +H A        +R L+E    P+   N+   T L +A      D A ++  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
                                             G          WH + P+H A  +  
Sbjct: 75  V---------------------------------GEVHS-----LWHGQKPIHLAVMANK 96

Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297
             +   L+E            G+ P  L  E  + +V ++  +       +++   ++ L
Sbjct: 97  TDLVVALVE-------GAKERGQMPESLLNECDEREVNEIGSH-------VKHCKGQTAL 142

Query: 298 HVAAKHGNWN--IVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL----SR 350
           H     G     ++   +             D+   TPL  A    + + +  +      
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGAS----PTAKDKADETPLMRAMEFRNREALDLMMDTVPS 198

Query: 351 HKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
             S+ +   N      + L  A     N +++    
Sbjct: 199 KSSLRLDYANKQGN--SHLHWA--ILINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 31/174 (17%), Positives = 51/174 (29%), Gaps = 32/174 (18%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKL 272
             + D      +H AA  G     +RL+E       +      +  G T LHLA + G +
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ------NRFGCTALHLACKFGCV 66

Query: 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTP 332
              K L +             +  +H+A      ++V           L+      G  P
Sbjct: 67  DTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVA---------LVEGAKERGQMP 114

Query: 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
             L       +V          +++         TAL           E+ K L
Sbjct: 115 ESLLNECDEREVN-----EIGSHVKHCKG----QTALHWCVGLGPEYLEMIKIL 159

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (311), Expect = 3e-32
 Identities = 56/306 (18%), Positives = 93/306 (30%), Gaps = 85/306 (27%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
             +      +  A + G      E  + L      V Q              D E  T L
Sbjct: 4   HIDDYSTWDIVKATQYGIY----ERCRELVEAGYDVRQ-------------PDKENVTLL 46

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
           H A  N    +++  + K ++          TPL  A                       
Sbjct: 47  HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT---------------------- 84

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
                         RQ +  MV  L   G +  LID       + +H AA  G+  +   
Sbjct: 85  --------------RQGHLSMVVQLMKYGADPSLIDGEGC---SCIHLAAQFGHTSIVAY 127

Query: 244 LLE-----ESKRLAYKRDCNGETPLHLAAENG-KLKVLKLLINKYPDAIEIRNNSDRSI- 296
           L+      +        D NG TPL  AA     +   +LL+      + + +   ++  
Sbjct: 128 LIAKGQDVDMM------DQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTA 180

Query: 297 LHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
           LH A   GN  ++S +L     E    ++  +  G + L LA    +  ++  L   +  
Sbjct: 181 LHWAVLAGNTTVISLLL-----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR-Q 234

Query: 355 NIRAKN 360
                N
Sbjct: 235 AKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 95.6 bits (239), Expect = 2e-22
 Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 32/181 (17%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKL 272
           +  +D +    +  A   G  +  + L+E              D    T LH AA N ++
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP------DKENVTLLHWAAINNRI 55

Query: 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVD 326
            ++K  I+K     ++  + + + LH A + G+ ++V           L+      +L+D
Sbjct: 56  DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ---------LMKYGADPSLID 106

Query: 327 RNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKH 385
             G + +HLAA   H+ +V + ++  K  ++   + +    T L  A   R +  +  + 
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIA--KGQDVDMMDQNGM--TPLMWA-AYRTHSVDPTRL 161

Query: 386 L 386
           L
Sbjct: 162 L 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 2e-19
 Identities = 51/264 (19%), Positives = 101/264 (38%), Gaps = 56/264 (21%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
               +  A ++   +  RE++              +RQ +  + T LH AA      +V 
Sbjct: 9   STWDIVKATQYGIYERCRELVE---------AGYDVRQPDKENVTLLHWAAINNRIDLV- 58

Query: 94  EIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
              KY       V+Q+G                +TPLH A    H  ++  L++  + PS
Sbjct: 59  ---KYYISKGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103

Query: 150 SYINKAYQTPLSIAIDARLN--DIACFIIDK--SPESLNTTRLPDELTLIHFVVMRQNYD 205
             I+    + + +A  A+     I  ++I K    + ++     + +T + +   R +  
Sbjct: 104 L-IDGEGCSCIHLA--AQFGHTSIVAYLIAKGQDVDMMDQ----NGMTPLMWAAYRTHSV 156

Query: 206 IMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDC 257
              ++L     +  L D   +H+   LH+A  +GN  +   LLE     +++      + 
Sbjct: 157 DPTRLLLTFNVSVNLGD--KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ------NI 208

Query: 258 NGETPLHLAAENGKLKVLKLLINK 281
            GE+ L LA +   + ++  L   
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEA 232

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  121 bits (305), Expect = 2e-31
 Identities = 54/291 (18%), Positives = 108/291 (37%), Gaps = 60/291 (20%)

Query: 68  LLRQKNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGN 123
           +  + +   +T LHIA   G+   V  ++         ++             + +    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQ 47

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK-SPES 182
           TPLH AV      V+R+LV   + P + +++  QT   +A + R       ++D  +P +
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
           L+                                 ++  ++     LH A  +   +  Q
Sbjct: 107 LD---------------------------------LEARNYDGLTALHVAVNTECQETVQ 133

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
            LLE    +      +G +PL  A EN  L +++LL+    + +  +  S  S LH A+ 
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASG 192

Query: 303 HGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            G   +V  ++      +    +L + + +TPL +A      D++   +  
Sbjct: 193 RGLLPLVRTLV-----RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  119 bits (301), Expect = 9e-31
 Identities = 54/275 (19%), Positives = 98/275 (35%), Gaps = 52/275 (18%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDIACFI 175
           D +G+TPLH AV   +   +  LV         ++      QTPL +A+   L  +   +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
           +                                   G +      LD H +   H A   
Sbjct: 66  VTA---------------------------------GAS---PMALDRHGQTAAHLACEH 89

Query: 236 GNVKMAQRLLEESKRLAY---KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
            +    + LL+ +         R+ +G T LH+A      + ++LL+ +  D   +   S
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149

Query: 293 DRSILHVAAKHGNWNIVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            RS L  A ++ + ++V   +         +N    +G++ LH A+      +V TL R 
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

Query: 352 KSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
              +   KN    ++T L +A        +I +  
Sbjct: 206 G-ADSSLKNC--HNDTPLMVA--RSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (265), Expect = 7e-26
 Identities = 43/261 (16%), Positives = 94/261 (36%), Gaps = 44/261 (16%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G+  LH+AV   N   +  ++        +     L   N + +T LH+A          
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNL-----FQQGGRELDIYNNLRQTPLHLAVITTLP---- 59

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            +++ L  V   G A  +       D  G T  H A  ++    +R L++  +  +  + 
Sbjct: 60  SVVRLL--VTA-G-ASPMA-----LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110

Query: 154 ---KAYQTPLSIAIDARLN--DIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMV 208
                  T L +A        +    ++++  + ++   +    + +   V   +  + V
Sbjct: 111 ARNYDGLTALHVA--VNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSM-V 166

Query: 209 KIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGE 260
           ++L   G N            + LH A+  G + + + L+        K      +C+ +
Sbjct: 167 QLLLQHGANVNAQMYSGS---SALHSASGRGLLPLVRTLVRSGADSSLK------NCHND 217

Query: 261 TPLHLAAENGKLKVLKLLINK 281
           TPL +A     + +L+    +
Sbjct: 218 TPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (257), Expect = 8e-25
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 12/169 (7%)

Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL-AY--KRDCNGETPLHLAAENGKLK 273
           +  R D     PLH A   GN+    RL+   ++        +   +TPLHLA       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 274 VLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF-ILRSPEMENLINLVDRNGNTP 332
           V++LL+          +   ++  H+A +H +   +   +  +      +   + +G T 
Sbjct: 61  VVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 333 LHLAAMGLHSDVV-FTLSRHKSVNIRAKN------HSARSNTALEIAEI 374
           LH+A      + V   L R   ++             A  N +L + ++
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.3 bits (220), Expect = 6e-20
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA---IEIRNNSDRSILHVAAKHGNWN 307
           +A + D +G+TPLH+A   G L  +  L+N +      ++I NN  ++ LH+A      +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 308 IVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH---KSVNIRAKNHSA 363
           +V   +            +DR+G T  HLA        +  L       ++++ A+N+  
Sbjct: 61  VVRLLVTAGAS----PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 364 RSNTALEIAEITRANGKEIQKHL 386
              TAL +A       +E  + L
Sbjct: 117 L--TALHVA--VNTECQETVQLL 135

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  119 bits (302), Expect = 4e-31
 Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 66/279 (23%)

Query: 75  MDETALHIAARIGDRAIVSEIMKYLPA-VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
           M    LH A    +   V E++   P+ + Q              D +G  PLH +V+ Q
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQ-------------KDQDGRIPLHWSVSFQ 47

Query: 134 HKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191
              +   L+ K  +     Y + +  TP  IA    +             +L   +    
Sbjct: 48  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVG------------NLEVVKS--- 90

Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE----- 246
             L              + L  +   ++++       LH A      +++Q L+E     
Sbjct: 91  --LYD------------RPLKPD---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133

Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW 306
             K      D   + PLH AA  G LK+++LL      A+  ++    + L  A   G+ 
Sbjct: 134 RIK------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

Query: 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           +    ++     E   +LVD  G     +A    +  V 
Sbjct: 188 DAAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVK 221

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (297), Expect = 2e-30
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 51/258 (19%)

Query: 122 GNTPLHNAVTNQHKR-VIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDIACFIID 177
            N PLH A        V  +L  K S     + +     + PL  ++  + ++I  F++ 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPS----LLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
           K                                   N  L D  D     P H A + GN
Sbjct: 58  K---------------------------------MENVNLDDYPDDSGWTPFHIACSVGN 84

Query: 238 VKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
           +++ + L +   +     K    G T LHLA      +V + LI      + I++  ++ 
Sbjct: 85  LEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQI 142

Query: 296 ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSV 354
            LH AA  G+  ++  +    +  + +N  D+ G TPL  A    H D     + ++   
Sbjct: 143 PLHRAASVGSLKLIELLCGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-A 199

Query: 355 NIRAKNHSARSNTALEIA 372
                ++      A ++A
Sbjct: 200 EYDLVDNK--GAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 61/287 (21%), Positives = 97/287 (33%), Gaps = 70/287 (24%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
            N  LH A        ++E+L  +         SLL QK+      LH +          
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKP--------SLLLQKDQDGRIPLHWSVSFQAH---- 49

Query: 94  EIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149
           EI  +L      VN               D  G TP H A +  +  V++ L ++   P 
Sbjct: 50  EITSFLLSKMENVNLDD----------YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99

Query: 150 SYINKAY---QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDI 206
             +NK      T L +A+  +  +++ F+I+                             
Sbjct: 100 --LNKITNQGVTCLHLAVGKKWFEVSQFLIEN---------------------------- 129

Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
                G +   +   D   + PLH AA+ G++K+ + L    K     +D  G TPL  A
Sbjct: 130 -----GAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
              G      LL+ KY    ++ +N       VA       +  F L
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFL 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  116 bits (294), Expect = 6e-30
 Identities = 53/276 (19%), Positives = 95/276 (34%), Gaps = 67/276 (24%)

Query: 119 DIEGNTPLHNAVTNQHKR----VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACF 174
             +G++ LH A+ ++ K     VIR +    +  +   N   QTPL              
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPL-------------- 49

Query: 175 IIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHY 231
                                H  V+    +I  + L   G +    +  D+    PLH 
Sbjct: 50  ---------------------HLAVITNQPEI-AEALLGAGCD---PELRDFRGNTPLHL 84

Query: 232 AAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
           A   G +     L +         +    + NG T LHLA+ +G L +++LL++   D +
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-V 143

Query: 287 EIRNNSD-RSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSD 343
             +   + R+ LH+A    N ++VS +L     +    +N V   G +P  L      + 
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPSTR 198

Query: 344 VVFTLSRH------KSVNIRAKNHSARSNTALEIAE 373
           +   L +              +      +   E  E
Sbjct: 199 IQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 94.9 bits (237), Expect = 3e-22
 Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 64/283 (22%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G++ LH+A+    + +  E++RQ     ++   + L  +N + +T LH+A       I  
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSY 151
            ++                    + D  GNTPLH A        + +L +        S 
Sbjct: 63  ALLGAGCDPE-------------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 152 INKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL 211
           +                        +            +  T +H   +     I V++L
Sbjct: 110 LKAT---------------------NY-----------NGHTCLHLASIHGYLGI-VELL 136

Query: 212 ---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETPLHLA 266
              G +    +  +   R  LH A    N  +   LL+     A   +    G +P  L 
Sbjct: 137 VSLGADVNAQEPCNG--RTALHLAVDLQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLT 191

Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
                 ++ + L     + +++   S+        +       
Sbjct: 192 WGRPSTRIQQQLGQLTLENLQMLPESE-DEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 29/146 (19%)

Query: 256 DCNGETPLHLAAENG----KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
             +G++ LHLA  +      ++V++ +       +  +NN  ++ LH+A       I   
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIA-- 61

Query: 312 ILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTL-----SRHKSVNIRAKN 360
                  E L+       L D  GNTPLHLA        V  L     + H    ++A N
Sbjct: 62  -------EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114

Query: 361 HSARSNTALEIAEITRANGKEIQKHL 386
           ++    T L +A  +      I + L
Sbjct: 115 YNGH--TCLHLA--SIHGYLGIVELL 136

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (299), Expect = 2e-29
 Identities = 50/347 (14%), Positives = 107/347 (30%), Gaps = 66/347 (19%)

Query: 33  GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIV 92
                            + +               +  +        LH  A  G     
Sbjct: 60  YSLYPNPQGYG-NGNDFLGDFNHTNL--------QIPTEPEPESPIKLHTEAA-GSY--- 106

Query: 93  SEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
             I + +      +                     T LH   +N        L+  ++  
Sbjct: 107 -AITEPITRESVNIID--------------PRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 149 SSYI-------NKAYQTPLSIAIDARLNDIACFIIDK--SPESLNTTRLPDELTLIHFVV 199
                      +    TPL +A+ AR   +  +++     P   N      E + +H   
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK----SERSALHQAA 207

Query: 200 MRQNYDIMVKILGTNKEL---IDRLDWHQRNPLHYAAASGN---VKMAQRLLE------- 246
             +++ + +  +  + +L   I+ LD +    L   A +     V  A+ L+E       
Sbjct: 208 ANRDFGM-MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW 306
           +           G T LH AA+   + ++K L+ +     + ++   ++ + +AA+ G  
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326

Query: 307 NIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +V +++     +    +  VD   +T   LA    H ++V    R 
Sbjct: 327 EVVMYLI-----QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (298), Expect = 2e-29
 Identities = 41/327 (12%), Positives = 86/327 (26%), Gaps = 73/327 (22%)

Query: 72  KNLMD---ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHN 128
           +N +              G+  +       L    +              + E    LH 
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-------------PEPESPIKLHT 100

Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAY--QTPLSIAIDARLNDIACFIIDKSPESLNTT 186
                   +   +  +       I      +T L         + +  +I    +     
Sbjct: 101 EAAG-SYAITEPITRESV----NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA- 154

Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                                    G +   +D  +     PL  A  +   ++   L++
Sbjct: 155 ------------------------AGADVNAMDCDEN---TPLMLAVLARRRRLVAYLMK 187

Query: 247 ESKRLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDA--IEIRNNSDRSILHVAAK 302
                A     + +  + LH AA N    ++  ++N       IE  + +  + L + A 
Sbjct: 188 AG---ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 303 HGNWNIVSF--ILRS------PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
           +   + V+   +L         +     +     G T LH AA   +  +V  L   K  
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 355 NIRAKN-------HSARSNTALEIAEI 374
           N   ++         A     +E+   
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMY 331

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (297), Expect = 3e-29
 Identities = 52/280 (18%), Positives = 101/280 (36%), Gaps = 33/280 (11%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
               L  A  + + +  R  ++  S            P         + +  F    +  
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHYS----------LYPNPQGYGNGNDFLGDFNH--TNL 84

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
            + T   P+    +H          + + +      I     H R  LH+ A++ + + +
Sbjct: 85  QIPTEPEPESPIKLHTEA--AGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKS 141

Query: 242 QRLLEESKRLAYKRDCN-------GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
           + L+    +       +         TPL LA    + +++  L+    D   I N S+R
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSER 200

Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT----LSR 350
           S LH AA + ++ ++ ++L S +++  I  +DRNG T L + A     D V +    + +
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 351 HKSVNIRAKNHSARSN----TALEIAEITRANGKEIQKHL 386
              V+               TAL  A   + +   I K+L
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYA--AQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 10/97 (10%), Positives = 18/97 (18%), Gaps = 18/97 (18%)

Query: 290 NNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
             S +  L  A+  G                  N +      P        +  +     
Sbjct: 34  ITSSQHSLLEASYDGYIKRQ------------RNELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 350 RHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
            +             S   L       A    I + +
Sbjct: 82  TNL-QIPTEPEP--ESPIKLHTE---AAGSYAITEPI 112

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  114 bits (289), Expect = 3e-29
 Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 84/296 (28%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
            ++    + LH AA  G      +I   L      ++                 +  TPL
Sbjct: 6   MEHQNKRSPLHAAAEAGHV----DICHMLVQAGANIDT-------------CSEDQRTPL 48

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDIACFIIDKSPESL 183
             A  N H   ++ L++  +     ++       T L +A                    
Sbjct: 49  MEAAENNHLEAVKYLIKAGA----LVDPKDAEGSTCLHLAA------------------- 85

Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKIL-GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                            ++ +  +V+ L    +  ++  D     P+ +A    +V + +
Sbjct: 86  -----------------KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 243 RLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297
            LL        +      D      LH AA +G + + ++L+    D +   N    S L
Sbjct: 129 LLLSKGSDINIR------DNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPL 181

Query: 298 HVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           H+AA+   ++ V   L          + L ++ G TPL  A++         +S+ 
Sbjct: 182 HIAARENRYDCVVLFL-----SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  102 bits (257), Expect = 7e-25
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKL 272
                 ++R+PLH AA +G+V +   L++     ++         +  TPL  AAEN  L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC------SEDQRTPLMEAAENNHL 57

Query: 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTP 332
           + +K LI      ++ ++    + LH+AAK G++ +V ++L + +M+  +N  D  G TP
Sbjct: 58  EAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTP 114

Query: 333 LHLAAMGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           +  A    H D+V   LS+   +NIR        N  L  A    +   +I + L
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNE----ENICLHWA--AFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  101 bits (255), Expect = 1e-24
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 32/208 (15%)

Query: 190 DELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           ++ + +H      + DI   +L   G N   ID     QR PL  AA + +++  + L++
Sbjct: 10  NKRSPLHAAAEAGHVDI-CHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 247 ESKRLA--YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
                A    +D  G T LHLAA+ G  +V++ L++     +  +++   + +  A ++ 
Sbjct: 66  AG---ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 305 NWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358
           + ++V         + L+      N+ D   N  LH AA     D+   L   K  ++ A
Sbjct: 123 HVDLV---------KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHA 172

Query: 359 KNHSARSNTALEIAEITRANGKEIQKHL 386
            N      + L IA   R N  +     
Sbjct: 173 VNIHGD--SPLHIA--ARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.6 bits (226), Expect = 8e-21
 Identities = 49/272 (18%), Positives = 85/272 (31%), Gaps = 66/272 (24%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARIG 87
             + LH A    +  +                  L++        +    T L  AA   
Sbjct: 11  KRSPLHAAAEAGHVDICH---------------MLVQAGANIDTCSEDQRTPLMEAAENN 55

Query: 88  DRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
                 E +KYL      V+               D EG+T LH A    H  V++ L+ 
Sbjct: 56  HL----EAVKYLIKAGALVDP-------------KDAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 144 KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK--SPESLNTTRLPDELTLIHFVVMR 201
              +  +  +    TP+  A + +  D+   ++ K       +     +E   +H+    
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN----EENICLHWAAFS 154

Query: 202 QNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAY 253
              DI  +IL     +   ++       +PLH AA           L        K    
Sbjct: 155 GCVDI-AEILLAAKCDLHAVNIHGD---SPLHIAARENRYDCVVLFLSRDSDVTLK---- 206

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
             +  GETPL  A+ N ++     +     D+
Sbjct: 207 --NKEGETPLQCASLNSQVWSALQMSKALQDS 236

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  114 bits (289), Expect = 1e-28
 Identities = 37/290 (12%), Positives = 96/290 (33%), Gaps = 43/290 (14%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDARLN--DIACFI 175
           D+ G++  + A+ + + R++  L+   +      N    + PL  A  A L    I   +
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGA----LKNLLENEFPLHQA--ATLEDTKIVKIL 81

Query: 176 IDK--SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLH 230
           +         +        T +++ V   N    VK+            +  W  +   +
Sbjct: 82  LFSGLDDSQFDD----KGNTALYYAVDSGNMQT-VKLFVKKNWRLMFYGKTGW--KTSFY 134

Query: 231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
           +A    +V +    L  S+  +        + +H+  +NG + ++ LL++         N
Sbjct: 135 HAVMLNDVSIVSYFL--SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNN 191

Query: 291 NSDRS-ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTL 348
           +      + +A  + +  ++         + L    D N  +      +   +++    +
Sbjct: 192 SLLFIPDIKLAIDNKDIEML---------QALFK-YDINIYSANLENVLLDDAEIAKMII 241

Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKR 398
            +H      +       +  +          + I K+  L+ +     K+
Sbjct: 242 EKHVEYKSDSYT----KDLDIVKNN---KLDEIISKNKELRLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 64/370 (17%), Positives = 113/370 (30%), Gaps = 103/370 (27%)

Query: 6   LEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLH 65
           L  +      ++K     +D F     G +A  + A+   N +++               
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVC-------------- 48

Query: 66  YSLLRQ---KNLMD-ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRM 117
            +LL     KNL++ E  LH AA + D     +I+K L       +Q             
Sbjct: 49  -TLLNAGALKNLLENEFPLHQAATLEDT----KIVKILLFSGLDDSQ------------- 90

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFI 175
            D +GNT L+ AV + + + +++ V+K+     Y    ++T    A    LN   I  + 
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA--VMLNDVSIVSYF 148

Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
           + + P   +T  L   L+                                   +H    +
Sbjct: 149 LSEIP---STFDLAILLS----------------------------------CIHITIKN 171

Query: 236 GNVKMAQRLLEESKRLAY--KRDCNGETP-LHLAAENGKLKVLKLLINKYPDA-IEIRNN 291
           G+V M   LL+           +     P + LA +N  +++L+ L     D  I     
Sbjct: 172 GHVDMMILLLDYM---TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSA-- 224

Query: 292 SDRSILHVAAKHGNWNIVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
                        +  I    I +  E            +  +                R
Sbjct: 225 -----NLENVLLDDAEIAKMIIEKHVE----YKSDSYTKDLDIVKNNKLDEIISKNKELR 275

Query: 351 HKSVNIRAKN 360
              VN   KN
Sbjct: 276 LMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.4 bits (220), Expect = 1e-19
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
              +   K  +  L       +K D +G +  + A  +  ++++  L+N       +  N
Sbjct: 6   RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLEN 62

Query: 292 SDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
                LH AA   +  IV  +L      +    +  D  GNT L+ A    +   V    
Sbjct: 63  --EFPLHQAATLEDTKIVKILL-----FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115

Query: 350 RHKS-VNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           +    +    K       T+   A     N   I  + 
Sbjct: 116 KKNWRLMFYGKTG---WKTSFYHA--VMLNDVSIVSYF 148

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  112 bits (283), Expect = 5e-28
 Identities = 50/290 (17%), Positives = 90/290 (31%), Gaps = 86/290 (29%)

Query: 76  DETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
           D + +H AA  G +  +    + L     AVN             +   +  +PLH A  
Sbjct: 59  DWSPMHEAAIHGHQLSL----RNLISQGWAVN-------------IITADHVSPLHEACL 101

Query: 132 NQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDIACFIIDKSPESLNTTRL 188
             H   ++IL++  +     +N     + TPL  A                         
Sbjct: 102 GGHLSCVKILLKHGA----QVNGVTADWHTPLFNAC------------------------ 133

Query: 189 PDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                              V +L   G + +          +P+H AA  G+V+    L+
Sbjct: 134 ------------VSGSWDCVNLLLQHGASVQPES----DLASPIHEAARRGHVECVNSLI 177

Query: 246 EESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303
                      +  +  TPL+LA EN +   +K L+    D +  +     S LH   + 
Sbjct: 178 AYG---GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRT 232

Query: 304 GNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +  +   ++     +        +  G  P+ L         +F L R 
Sbjct: 233 ASEELACLLM-----DFGADTQAKNAEGKRPVELVPPESPLAQLF-LERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 33/159 (20%)

Query: 232 AAASGNVKMAQRLLEE----SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            ++  +   +  L+      +     +   +G  P       G    ++LL N     + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSN----PLM 53

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
               SD S +H AA HG+   +          NLI      N++  +  +PLH A +G H
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSL---------RNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 342 SDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEI 374
              V  L +H + VN    +      +A  + + +   +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (278), Expect = 6e-28
 Identities = 35/254 (13%), Positives = 66/254 (25%), Gaps = 55/254 (21%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
           G   +  A+     R    L  ++     YI     T                       
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGT----------------- 53

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
                               +    ++      ++          NPLH AA  GN+   
Sbjct: 54  -------------------SKGRTGLIPSNYVAEQ-----AESIDNPLHEAAKRGNLSWL 89

Query: 242 QRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV 299
           +  L+           D  G T L+ A   G   ++++L  +    +  +N    + LH 
Sbjct: 90  RECLDNR---VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

Query: 300 AAKHGNWNIVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358
           AA  G  +IV   + +        +L +        +A     + ++             
Sbjct: 147 AAWKGYADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTL 201

Query: 359 KNHSARSNTALEIA 372
            N         E +
Sbjct: 202 SNAED--YLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 15/127 (11%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           K    G+  +  A    + +    L  +  D I    +   +        G   ++    
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSARSNT 367
                 N +     + + PLH AA   +   +     ++  VN   K      + A    
Sbjct: 63  -----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

Query: 368 ALEIAEI 374
             +I E+
Sbjct: 118 HKDIVEM 124

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 39/243 (16%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQ-DFIALRLHYSLLRQKNLMDETALHIAARIGDRAIV 92
           G   +  A+     +   E+  ++ D I              M +T        G   ++
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIY----------ITDMSDTNWWKGTSKGRTGLI 61

Query: 93  SEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
                                         + PLH A    +   +R  ++     +  +
Sbjct: 62  PSNYVA------------------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-L 102

Query: 153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL- 211
           +KA  T L  A      DI   +  +    LN        T +H    +   DI V++L 
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADI-VQLLL 160

Query: 212 --GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269
             G      D  +  ++     A  +    + ++       +    +         +   
Sbjct: 161 AKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLE 216

Query: 270 GKL 272
              
Sbjct: 217 HHH 219

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  111 bits (280), Expect = 8e-28
 Identities = 51/316 (16%), Positives = 95/316 (30%), Gaps = 95/316 (30%)

Query: 72  KNLMDETALHIAARIGDRAIVS---------EIMKYLPAVNQVGPAPVLE---SLFRMTD 119
           +     T L IA+  G                ++              +    SL   TD
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF-----------IYQGASLHNQTD 54

Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS 179
             G T LH A         + L+E  +  +   +   +TPL  A+               
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAV--------------- 98

Query: 180 PESLNTTRLPDELTLIHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAAS 235
                                  +   + +IL     T+   +D        PL  AA  
Sbjct: 99  ---------------------SADAQGVFQILIRNRATD---LDARMHDGTTPLILAARL 134

Query: 236 GNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
               M + L+       +       D  G++ LH AA    +    +L+    +  +++N
Sbjct: 135 AVEGMLEDLINSHADVNAV------DDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQN 187

Query: 291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDV 344
           N + + L +AA+ G++            + L+      ++ D     P  +A   +H D+
Sbjct: 188 NREETPLFLAAREGSYETA---------KVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238

Query: 345 VFTLSRHKSVNIRAKN 360
           V  L      +    +
Sbjct: 239 VRLLDLEHH-HHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 34/165 (20%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            LH AA       A+RLLE       +      D  G TPLH A       V ++LI   
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLA 336
              ++ R +   + L +AA+     ++         E+LI      N VD  G + LH A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGML---------EDLINSHADVNAVDDLGKSALHWA 164

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
           A   + D    L ++   N   +N         A    + E A++
Sbjct: 165 AAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKV 208

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 49/227 (21%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
           Q +   ETALH+AAR        +  K L       N               D  G TPL
Sbjct: 52  QTDRTGETALHLAARYSRS----DAAKRLLEASADANI-------------QDNMGRTPL 94

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFIIDK--SPES 182
           H AV+   + V +IL+   +           TPL +A  ARL    +   +I+      +
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA--ARLAVEGMLEDLINSHADVNA 152

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVK 239
           ++        + +H+     N D    +L   G NK++ +  +     PL  AA  G+ +
Sbjct: 153 VDD----LGKSALHWAAAVNNVDA-AVVLLKNGANKDMQNNREE---TPLFLAAREGSYE 204

Query: 240 MAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
            A+ LL+     +        D     P  +A E     +++LL  +
Sbjct: 205 TAKVLLDHFANRDIT------DHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 22/147 (14%)

Query: 254 KRDCNGETPLHLAAENGK-------------LKVLKLLINKYPDAIEIRNNSDRSILHVA 300
            R  +G TPL +A+ +G                V+   I +        + +  + LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 301 AKHGNWNIVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359
           A++   +     +  S +     N+ D  G TPLH A       V   L R+++ ++ A+
Sbjct: 65  ARYSRSDAAKRLLEASAD----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 360 NHSARSNTALEIAEITRANGKEIQKHL 386
            H     T L +A   R   + + + L
Sbjct: 121 MHDGT--TPLILA--ARLAVEGMLEDL 143

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 2e-27
 Identities = 55/312 (17%), Positives = 99/312 (31%), Gaps = 87/312 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIE------GNTP 125
             L D  ++  A    +   +  ++ +L             S  R+TD E      G T 
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFL-----------QRSKKRLTDSEFKDPETGKTC 57

Query: 126 LHNAVTNQ---HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182
           L  A+ N        I +L                    + +  + + +  F+     +S
Sbjct: 58  LLKAMLNLHNGQNDTIALL--------------------LDVARKTDSLKQFVNASYTDS 97

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRN-----------P 228
                     T +H  + R+N  + V +L   G + +     D+ ++            P
Sbjct: 98  YY-----KGQTALHIAIERRNMTL-VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 229 LHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLL-------- 278
           L  AA +  + + + LL+ S + A    RD  G T LH   E     V            
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 279 -------INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNT 331
                  ++      EI N    + L +AA  G   ++++IL+           + +   
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------REIHEPE 261

Query: 332 PLHLAAMGLHSD 343
             H AA   H  
Sbjct: 262 CRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.5 bits (243), Expect = 8e-23
 Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 50/241 (20%)

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRL-DWHQRN------PLHYAAAS---GNVKMAQ 242
             I   V + N   +  +L   +    RL D   ++       L  A  +   G      
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 243 RLLEESKRL----------AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
            LL+ +++                  G+T LH+A E   + ++ LL+    D ++   N 
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANG 133

Query: 293 DRSI--------------LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           D                 L +AA      IV F+L++      I+  D  GNT LH    
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 339 GLHSDVVFT----------LSRHKSVNIRAKNHSARSN---TALEIAEITRANGKEIQKH 385
              + V  T          L     ++   K     +    T L +A    +    +  +
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA--ASSGKIGVLAY 251

Query: 386 L 386
           +
Sbjct: 252 I 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 27/109 (24%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE-------TALHIAARI 86
           GN VLH  V   +  V         +  + +  + L     ++E       T L +AA  
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 87  GDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
           G   ++     Y+           L+      +I      H A  + H 
Sbjct: 244 GKIGVL----AYI-----------LQ-----REIHEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 290 NNSDRSILHVAAKHGNWNIVS----FILRSPEMENLINLVDR-NGNTPLHLAAMGL---H 341
              DR  +  A    N   +     F+ RS +        D   G T L  A + L    
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 342 SDVV-FTLSRHKSVNIRAKNHSARSN-------TALEIAEITRANGKEIQKHL 386
           +D +   L   +  +   +  +A          TAL IA         +   L
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA--IERRNMTLVTLL 120

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  108 bits (272), Expect = 2e-26
 Identities = 54/324 (16%), Positives = 104/324 (32%), Gaps = 80/324 (24%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
           D      A   GD   V  +++    +N               +++G T LH A  + + 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINY-------------ANVDGLTALHQACIDDNV 86

Query: 136 RVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDKSPESLNTTRLPD 190
            +++ LVE  +     IN+       PL  A  A     DIA ++I +            
Sbjct: 87  DMVKFLVENGA----NINQPDNEGWIPLHAA--ASCGYLDIAEYLISQ------------ 128

Query: 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
                                G +   ++        PL  A      ++ Q  +     
Sbjct: 129 ---------------------GAHVGAVNSEGD---TPLDIAEEEAMEELLQNEVN---- 160

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310
              ++  + E               + L + + +       S  + LHVAA  G   ++ 
Sbjct: 161 ---RQGVDIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 311 FILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTA 368
            ++     +    +N+ D +G TPLH AA     +    L  +   ++ A N   +  TA
Sbjct: 217 LLI-----QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQ--TA 268

Query: 369 LEIAEITRANGKEIQKHLTLKALK 392
            ++A         +++    + L 
Sbjct: 269 FDVA--DEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 48/223 (21%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
           Q +      LH AA  G      +I +YL      V  V             + EG+TPL
Sbjct: 101 QPDNEGWIPLHAAASCGYL----DIAEYLISQGAHVGAV-------------NSEGDTPL 143

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
             A     + +++  V +  V    I               L D   ++       +   
Sbjct: 144 DIAEEEAMEELLQNEVNRQGV---DIE----AARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
           +     T +H    +   ++ +K+L     +   ++  D+    PLH AA  G  +  + 
Sbjct: 197 K--SGGTALHVAAAKGYTEV-LKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 244 LLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           L+E     E+       +  G+T   +A E+    + +L   +
Sbjct: 251 LVENLCDMEAV------NKVGQTAFDVADEDILGYLEELQKKQ 287

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (262), Expect = 6e-26
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 69/246 (28%)

Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDIAC 173
           M   E    L  A     K+V  IL +        +++      TPL+IA          
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT----YQVDEVDTEGNTPLNIA---------- 46

Query: 174 FIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLH 230
                     N                  N   + K L   G +   I+  +    +P  
Sbjct: 47  --------VHN------------------NDIEIAKALIDRGAD---INLQNSISDSPYL 77

Query: 231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
           YA A G  ++   +L+ +     K +  G   L  AAE G +  +KLL+    + I+ +N
Sbjct: 78  YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137

Query: 291 NSDRSILHVAAKHGNWN-----IVSFILRSPEMENLI------NLVDRNGNTPLHLAAMG 339
           +   + L  A      N     IV           L+      ++ D +G T +  A   
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKL---------LMENGADQSIKDNSGRTAMDYANQK 188

Query: 340 LHSDVV 345
            ++++ 
Sbjct: 189 GYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (251), Expect = 2e-24
 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 27/202 (13%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
           +   L+     R    +  +IL      +D +D     PL+ A  + ++++A+ L++   
Sbjct: 5   EVGALLEAANQRDTKKV-KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 247 --ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
               +      +   ++P   A   G+ ++L  ++      +   N    + L  AA+ G
Sbjct: 64  DINLQ------NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 305 NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL-----HSDVVFTLSRHKSVNIRAK 359
           + + V  +L     +  I+  +  G T L  A         + D+V  L  +   +   K
Sbjct: 118 HIDNVKLLLEDGRED--IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIK 174

Query: 360 N-------HSARSNTALEIAEI 374
           +         A      EI++I
Sbjct: 175 DNSGRTAMDYANQKGYTEISKI 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 85/262 (32%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K       L  A +   + +     + L      V++              D EGNTPL+
Sbjct: 2   KTYEVGALLEAANQRDTKKVK----EILQDTTYQVDE-------------VDTEGNTPLN 44

Query: 128 NAVTNQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLNDIACFIIDKSPES 182
            AV N    + + L+++  D      IN       +P   A                   
Sbjct: 45  IAVHNNDIEIAKALIDRGAD------INLQNSISDSPYLYAG------------------ 80

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNV 238
                              Q    ++  +      +    +R      N L  AA  G++
Sbjct: 81  ------------------AQGRTEILAYMLKHATPDLNKHNRYGG---NALIPAAEKGHI 119

Query: 239 KMAQRLLEESKRLAYK--RDCNGETPLHLAA-----ENGKLKVLKLLINKYPDAIEIRNN 291
              + LL           ++  G T L  A            ++KLL+    D   I++N
Sbjct: 120 DNVKLLL--EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDN 176

Query: 292 SDRSILHVAAKHGNWNIVSFIL 313
           S R+ +  A + G   I   + 
Sbjct: 177 SGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.8 bits (211), Expect = 4e-19
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 20/138 (14%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           +       L  A +    KV ++L +     ++  +    + L++A  + +  I      
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKA--- 57

Query: 315 SPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTA 368
                 LI      NL +   ++P   A     ++++  + +H + ++   N       A
Sbjct: 58  ------LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY--GGNA 109

Query: 369 LEIAEITRANGKEIQKHL 386
           L  A        +  K L
Sbjct: 110 LIPA--AEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 59/183 (32%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYL-----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
           +N + ++    A   G   I+     Y+     P +N+              +  G   L
Sbjct: 68  QNSISDSPYLYAGAQGRTEIL----AYMLKHATPDLNK-------------HNRYGGNAL 110

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
             A    H   +++L+E       + N    T L  A+  R                   
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG----------------- 153

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
                          Q Y  +VK+L   G ++ + D      R  + YA   G  ++++ 
Sbjct: 154 --------------NQLYQDIVKLLMENGADQSIKDN---SGRTAMDYANQKGYTEISKI 196

Query: 244 LLE 246
           L +
Sbjct: 197 LAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV 345
           ++     ++L  A +     +   +      +    ++ VD  GNTPL++A      ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 346 FTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
             L      +I  +N    S++    A        EI  ++
Sbjct: 56  KALIDRG-ADINLQNSI--SDSPYLYA--GAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 18/79 (22%)

Query: 72  KNLMDETALHIAARIGDRAIVS-EIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
           +N    TAL  A  + +   +  +I+K L       +               D  G T +
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI-------------KDNSGRTAM 182

Query: 127 HNAVTNQHKRVIRILVEKD 145
             A    +  + +IL + +
Sbjct: 183 DYANQKGYTEISKILAQYN 201

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  103 bits (260), Expect = 6e-26
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 22/159 (13%)

Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            +H  AA G +   +  L +   L  K D  G TPL  A+  G+++ ++ L+    D   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PH 63

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLH 341
           I      S L +A+  G  +IV           L+      N+ D NG TPL  A  G H
Sbjct: 64  ILAKERESALSLASTGGYTDIVGL---------LLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 342 SDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
              V   L+R   +   A +       A +    ++ ++
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 61/221 (27%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
            +  +H          ++  + K     +  ++   TPL  A                  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA------------------ 43

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
           S                         V+ L   G +      L   + + L  A+  G  
Sbjct: 44  SAF------------------GEIETVRFLLEWGAD---PHILAKERESALSLASTGGYT 82

Query: 239 KMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD 293
            +   LLE              D NG TPL  A     +K ++ L+ +  D +    +S 
Sbjct: 83  DIVGLLLERDVDINIY------DWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSG 135

Query: 294 RSILHVAAKHGNWNIVSFILRSPEMENL--INLVDRNGNTP 332
            + + +A   G   +   I       ++  +   +     P
Sbjct: 136 YTPMDLAVALGYRKVQQVIE-----NHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.4 bits (210), Expect = 3e-19
 Identities = 47/226 (20%), Positives = 72/226 (31%), Gaps = 71/226 (31%)

Query: 76  DETALHIAARIGDRAIVSEIMKYL-----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAV 130
           D  ++H  A  G+   +    K         VN+              D  G TPL  A 
Sbjct: 2   DSLSIHQLAAQGELDQL----KEHLRKGDNLVNK-------------PDERGFTPLIWAS 44

Query: 131 TNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPD 190
                  +R L+E  + P   + K  ++ LS+A                  S        
Sbjct: 45  AFGEIETVRFLLEWGADPHI-LAKERESALSLA------------------STG------ 79

Query: 191 ELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
                        Y  +V +L     +   I+  DW+   PL YA    +VK  + LL  
Sbjct: 80  ------------GYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 248 SKRLAYK--RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
               A       +G TP+ LA   G  KV +++ N     +   N 
Sbjct: 125 G---ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 82.8 bits (206), Expect = 1e-18
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
               +H  A  G+L  LK  + K  + +   +    + L  A+  G    V F+L     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL----- 56

Query: 319 EN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSARSNTALE 370
           E     +++ +   + L LA+ G ++D+V  L      +NI   N       A     ++
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 371 IAEI 374
             E 
Sbjct: 117 CVEA 120

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 53/163 (32%)

Query: 33  GGNAVLHMAVRFRNQQVIREILRQ-QDFIALR-------LHYS-----------LLRQ-- 71
           G +  +H          ++E LR+  + +          L ++           LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 72  ----KNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGN 123
                    E+AL +A+  G   IV      L      +N               D  G 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIV----GLLLERDVDINI-------------YDWNGG 103

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIA 163
           TPL  AV   H + +  L+ +     + +        TP+ +A
Sbjct: 104 TPLLYAVRGNHVKCVEALLARG----ADLTTEADSGYTPMDLA 142

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  107 bits (267), Expect = 1e-25
 Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 28/315 (8%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
           D              + S+ +     + +  P+PV+        ++    L   +  + +
Sbjct: 19  DNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFLQRLLFPEIQ 76

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI 195
            +   L    S  +S    + Q    ++ D+ L ++     +     LN        T +
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPL 135

Query: 196 HFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ---RLLEESK 249
           H++    N ++ VK L   G+N       D    + L  A  S N   +     LL+   
Sbjct: 136 HWLTSIANLEL-VKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 250 RLAYKRDCNGETPLHLAAENGKLK------------VLKLLINKYPDAIEIRNNSDRSIL 297
                 D    T LH       +             ++  ++ K    I+   N   S  
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 251

Query: 298 HVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
           +        +I+  +     + N++N  D NG+T L++AA   +  +V  L  +   +  
Sbjct: 252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPF 310

Query: 358 AKNHSARSNTALEIA 372
             N S      ++  
Sbjct: 311 IANKSGL--RPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 84.3 bits (208), Expect = 6e-18
 Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 73/297 (24%)

Query: 61  ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFR 116
           +L    S    +           +     +++ E+    P     +N             
Sbjct: 81  SLNNDSSNRNSEGGSSNQQQQHVSF---DSLLQEVNDAFPNTQLNLNIP----------- 126

Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII 176
             D  GNTPLH   +  +  +++ LV+  S      +   ++ L  A+ +  N       
Sbjct: 127 -VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNN------- 177

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
                                      ++ ++  L      +   D   R  LH+   + 
Sbjct: 178 ----------------------YDSGTFEALLDYLYPC---LILEDSMNRTILHHIIITS 212

Query: 237 NVK------------MAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
            +             +   ++++  R         E+  +      K  +L+ L  K+  
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272

Query: 285 AIEI--RNNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAA 337
           A  +  ++++  + L++AA+ GN +IV  +L     +      + +++G  P+   A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALL-----DYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.5 bits (167), Expect = 9e-13
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 32/210 (15%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQH-- 134
            T LH    I +     E++K+L        +  L       D  G + L  AV + +  
Sbjct: 132 NTPLHWLTSIANL----ELVKHLVKHG----SNRLY-----GDNMGESCLVKAVKSVNNY 178

Query: 135 -KRVIRILVEKDSVPSSYINKAYQTPL------------SIAIDARLNDIACFIIDKSPE 181
                  L++         +   +T L            S A    L+ +  +I+ K   
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ-N 237

Query: 182 SLNTTRLPDELTLIHFVVM--RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK 239
               +   ++ +  +      + +    + +      +++  D +    L+ AA  GN+ 
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 240 MAQRLLEESKRLAYKRDCNGETPLHLAAEN 269
           +   LL+      +  + +G  P+   A  
Sbjct: 298 IVDALLDYGADP-FIANKSGLRPVDFGAGL 326

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  102 bits (256), Expect = 6e-25
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 55/235 (23%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
           TD  G T LH A         + L+E  +  +   +   +TPL  A+             
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAV------------- 66

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL-IDRLDWHQRNPLHYAAASG 236
                                    +   + +IL  N+   +D        PL  AA   
Sbjct: 67  -----------------------SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103

Query: 237 NVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
              M + L+       +       D  G++ LH AA    +    +L+    +  +++NN
Sbjct: 104 VEGMLEDLINSHADVNAV------DDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNN 156

Query: 292 SDRSILHVAAKHGNWNIVSF-ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
            + + L +AA+ G++      +          ++ D     P  +A   +H D+V
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIV 207

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.8 bits (250), Expect = 4e-24
 Identities = 60/276 (21%), Positives = 98/276 (35%), Gaps = 85/276 (30%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPL 126
           Q +   ETALH+AAR        +  K L       N               D  G TPL
Sbjct: 20  QTDRTGETALHLAARYSRS----DAAKRLLEASADANI-------------QDNMGRTPL 62

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
           H AV+   + V +IL+   +           TPL +A                       
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA---------------------- 100

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
                         R   + M++ L     +   ++ +D   ++ LH+AAA  NV  A  
Sbjct: 101 --------------RLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 244 LLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILH 298
           LL+     + +      +   ETPL LAA  G  +  K+L++ + +  +I ++ DR    
Sbjct: 144 LLKNGANKDMQ------NNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRD 196

Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
           +A +  + +IV           L    +   +  LH
Sbjct: 197 IAQERMHHDIVRL---------LDE-YNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 9e-24
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 34/165 (20%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            LH AA       A+RLLE       +      D  G TPLH A       V ++LI   
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLA 336
              ++ R +   + L +AA+     ++         E+LI      N VD  G + LH A
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGML---------EDLINSHADVNAVDDLGKSALHWA 132

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
           A   + D    L ++   N   +N         A    + E A++
Sbjct: 133 AAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKV 176

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.5 bits (205), Expect = 4e-18
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           + D  GET LHLAA   +    K L+    D   I++N  R+ LH A       +   ++
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI 78

Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNT 367
           R+   +  ++    +G TPL LAA      ++   ++ H  VN          H A +  
Sbjct: 79  RNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136

Query: 368 ALEIAEI 374
            ++ A +
Sbjct: 137 NVDAAVV 143

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 320 NLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAE 373
           +L N  DR G T LHLAA    SD     L      NI+        H+A S  A  + +
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 374 I 374
           I
Sbjct: 76  I 76

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.9 bits (250), Expect = 8e-25
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 22/157 (14%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            + L  AAA G V+  + LLE      +       +  G  P+ +    G  +V +LL+ 
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNAP------NSYGRRPIQVMM-MGSARVAELLLL 65

Query: 281 KYPDAIEIRNNSDRSI-LHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAA 337
              +     + +  +  +H AA+ G  + +  +           +++ D  G  P+ LA 
Sbjct: 66  HGAE-PNCADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVRDAWGRLPVDLAE 119

Query: 338 MGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIAE 373
              H DV  +  +               +    +I +
Sbjct: 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY--KRDCN 258
            +     V+ L       +  + + R P+      G+ ++A+ LL      A     D  
Sbjct: 21  ARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG---AEPNCADPA 76

Query: 259 GET-PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
             T P+H AA  G L  L +L       +++R+   R  + +A + G+ ++  ++     
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA--- 132

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
                      G+    + A    SD+ 
Sbjct: 133 -----AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.1 bits (191), Expect = 6e-17
 Identities = 34/192 (17%), Positives = 53/192 (27%), Gaps = 50/192 (26%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
                L  A        +R L+E  + P++  N   + P+ +                  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVM----------------- 52

Query: 181 ESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                              M  +  +  ++L   G      D        P+H AA  G 
Sbjct: 53  -------------------MMGSARV-AELLLLHGAEPNCADPATL--TRPVHDAAREGF 90

Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297
           +     L     RL   RD  G  P+ LA E G   V + L           N+      
Sbjct: 91  LDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNH-----A 143

Query: 298 HVAAKHGNWNIV 309
            + A  G  +I 
Sbjct: 144 RIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
                L  AA  G+++ ++ L+    +     N+  R  + V    G+  +   +L    
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLL---- 64

Query: 318 MEN--LINLVDRNGNT-PLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSARSNTA 368
             +    N  D    T P+H AA     D +  L R    +++R          A     
Sbjct: 65  -LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123

Query: 369 LEIAEITRANG 379
            ++A   RA  
Sbjct: 124 RDVARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 30/202 (14%), Positives = 49/202 (24%), Gaps = 64/202 (31%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
              L  AA  G    V    + L       N               +  G  P+   +  
Sbjct: 13  ADWLATAAARGRVEEV----RALLEAGANPNA-------------PNSYGRRPIQVMMMG 55

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
              RV  +L+   + P+         P+  A  AR                         
Sbjct: 56  -SARVAELLLLHGAEPNCADPATLTRPVHDA--AREG----------------------- 89

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA 252
                       D  + +L      +D  D   R P+  A   G+  +A+ L   +    
Sbjct: 90  ----------FLDT-LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA---G 135

Query: 253 YKRDCNGETPLHLAAENGKLKV 274
                 G     + A  G   +
Sbjct: 136 ---GTRGSNHARIDAAEGPSDI 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
           + L  AAA G+V+  +RLL          +  G+T L +    G   +   L+ +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-P 61

Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDV 344
            +++ S  S +H AA+ G  + +  ++     E+   +N+ D  G  P+HLA    H+ V
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV-----EHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 345 VFTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
           V  L+    ++ R          A    A ++ +I
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----E 247
             +     R +   + ++L       D L+   +  L      G+  +A  LL+      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 248 SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
            +      D +G +P+H AA  G L  LK+L+    D + + + +    +H+A + G+  
Sbjct: 63  VQ------DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTA 115

Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           +VSF+    +    ++  D  G TPL LA      D+V  L  H
Sbjct: 116 VVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 76.7 bits (190), Expect = 9e-17
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
               L  AA  G ++ ++ L+++     +  N   ++ L V    G+  I          
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIA--------- 51

Query: 319 ENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSARSN 366
             L+      N+ D +G +P+H AA     D +  L  H   VN+         H A   
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 367 TALEIAE--ITRAN 378
               +       ++
Sbjct: 112 GHTAVVSFLAAESD 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 35/225 (15%), Positives = 62/225 (27%), Gaps = 83/225 (36%)

Query: 33  GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIV 92
            G+  L  A    + Q +R +L +                N   +TAL +    G     
Sbjct: 2   AGDR-LSGAAARGDVQEVRRLLHR--------ELVHPDALNRFGKTALQVMMF-GS---- 47

Query: 93  SEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK--DS 146
           + I   L     + N               D  G +P+H+A        +++LVE   D 
Sbjct: 48  TAIALELLKQGASPNV-------------QDTSGTSPVHDAARTGFLDTLKVLVEHGAD- 93

Query: 147 VPSSYINKAY---QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN 203
                +N        P+ +A+                                    ++ 
Sbjct: 94  -----VNVPDGTGALPIHLAV------------------------------------QEG 112

Query: 204 YDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
           +  +V  L   ++   + R D     PL  A   G   +   L  
Sbjct: 113 HTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 27/145 (18%)

Query: 222 DWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLK 276
           +      LH A+  G++   + LL+       K      D  G TPLH A  +G LKV++
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK------DHAGWTPLHEACNHGHLKVVE 60

Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGN 330
           LL+      +      + S LH AAK+G+ +IV           L+      N V+  G 
Sbjct: 61  LLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKL---------LLSYGASRNAVNIFGL 110

Query: 331 TPLHLAAMGLHSDVVFTLSRHKSVN 355
            P+          ++    +++S +
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            +  GET LH+A+  G +  ++ L+    D   +++++  + LH A  HG+  +V  +L 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL- 63

Query: 315 SPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARS 365
               ++  L+N      ++PLH AA   H D+V  L  +   +  A N            
Sbjct: 64  ----QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDD 118

Query: 366 NTALEIAEITRANG 379
            +   +  +   N 
Sbjct: 119 ESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 48/168 (28%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
           T+  G T LH A        +  L++  S P+   + A  TPL  A              
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEA--CNHG-------- 54

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
                                    +  + V++L  +K L++   +   +PLH AA +G+
Sbjct: 55  -------------------------HLKV-VELLLQHKALVNTTGYQNDSPLHDAAKNGH 88

Query: 238 VKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           V + + LL       +       +  G  P+    +     +L L   
Sbjct: 89  VDIVKLLLSYGASRNAV------NIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 35/183 (19%), Positives = 56/183 (30%), Gaps = 66/183 (36%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
            N   ET LHIA+  GD       ++YL    Q G +          D  G TPLH A  
Sbjct: 6   TNHRGETLLHIASIKGDI----PSVEYLL---QNG-SDPNV-----KDHAGWTPLHEACN 52

Query: 132 NQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
           + H +V+ +L++          +N       +PL                          
Sbjct: 53  HGHLKVVELLLQHKAL------VNTTGYQNDSPL-------------------------- 80

Query: 187 RLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
                    H      + DI VK+L   G ++  ++        P+ Y        +   
Sbjct: 81  ---------HDAAKNGHVDI-VKLLLSYGASRNAVNI---FGLRPVDYTDDESMKSLLLL 127

Query: 244 LLE 246
             +
Sbjct: 128 PEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
               +++ LH AA+ G      +I+K L +     N V             +I G  P+ 
Sbjct: 72  TGYQNDSPLHDAAKNGHV----DIVKLLLSYGASRNAV-------------NIFGLRPVD 114

Query: 128 NAVTNQHKRVIRILVEKDSVPSS 150
                  K ++ +  + +S  +S
Sbjct: 115 YTDDESMKSLLLLPEKNESSSAS 137

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.5 bits (244), Expect = 6e-24
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 35/167 (20%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            N L  AAA G+++    LL+      ++      +  G T L +    G  ++ + L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQ------NGFGRTALQVMK-LGNPEIARRLLL 58

Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLH 334
           +  +  ++++ +  +++H AA+ G  + +         + L+      N+ D  GN PLH
Sbjct: 59  RGAN-PDLKDRTGFAVIHDAARAGFLDTL---------QTLLEFQADVNIEDNEGNLPLH 108

Query: 335 LAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
           LAA   H  VV  L +H + N+  +N         AR     E+  +
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.0 bits (209), Expect = 3e-19
 Identities = 39/208 (18%), Positives = 69/208 (33%), Gaps = 62/208 (29%)

Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDIAC 173
           M +      L +A        +  L++ +      +N      +T L +           
Sbjct: 1   MAE-PWGNELASAAARGDLEQLTSLLQNNV----NVNAQNGFGRTALQVM---------- 45

Query: 174 FIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLH 230
                                      +     + + L   G N +L DR  +     +H
Sbjct: 46  ---------------------------KLGNPEIARRLLLRGANPDLKDRTGF---AVIH 75

Query: 231 YAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
            AA +G +   Q LLE       +      D  G  PLHLAA+ G L+V++ L+      
Sbjct: 76  DAARAGFLDTLQTLLEFQADVNIE------DNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129

Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           +  RN+   +   +A  +G   +VS + 
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.3 bits (184), Expect = 8e-16
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 71/215 (33%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
              L  AA  GD     E +  L      VN               +  G T L      
Sbjct: 6   GNELASAAARGDL----EQLTSLLQNNVNVN-------------AQNGFGRTALQVMKLG 48

Query: 133 QHKRVIRILVEKDSVPSSYIN---KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP 189
            +  + R L+ + +      +   +     +  A                          
Sbjct: 49  -NPEIARRLLLRGA----NPDLKDRTGFAVIHDAA------------------------- 78

Query: 190 DELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                      R  +   ++ L     +  + D        PLH AA  G++++ + L++
Sbjct: 79  -----------RAGFLDTLQTLLEFQADVNIEDNEGN---LPLHLAAKEGHLRVVEFLVK 124

Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
            +      R+  G+T   LA   G+ +V+ L+   
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 21/96 (21%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K+      +H AAR G      + ++ L      VN               D EGN PLH
Sbjct: 66  KDRTGFAVIHDAARAGFL----DTLQTLLEFQADVNI-------------EDNEGNLPLH 108

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
            A    H RV+  LV+  +    + N    T   +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.5 bits (244), Expect = 1e-23
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 189 PDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
           P+ +  I     R+   + V++      N   +++ D H  +PLH+A   G   + + L+
Sbjct: 3   PEFMDDIFTQC-REGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 246 E-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300
                          +   +TPLHLAA +G   +++ L+    D I   N      LH A
Sbjct: 60  MRGARINVM------NRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYA 112

Query: 301 AKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV 345
              G   +   ++      N  L+++ ++ G  P+  A   L   + 
Sbjct: 113 CFWGQDQVAEDLV-----ANGALVSICNKYGEMPVDKAKAPLRELLR 154

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
                +      G    ++L ++   + +   ++   S LH A + G   +V        
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-------- 55

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
            E LI      N+++R  +TPLHLAA   H D+V  L ++K  +I A N     N  L  
Sbjct: 56  -EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNE--HGNVPLHY 111

Query: 372 AEITRANGKEIQKHL 386
           A        ++ + L
Sbjct: 112 A--CFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.7 bits (203), Expect = 2e-18
 Identities = 32/227 (14%), Positives = 64/227 (28%), Gaps = 63/227 (27%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFII 176
             E    +       +   +R+ ++      +  +    +PL  A   R     +   +I
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLI 59

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
            +                                 G     I+ ++     PLH AA+ G
Sbjct: 60  MR---------------------------------GAR---INVMNRGDDTPLHLAASHG 83

Query: 237 NVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
           +  + Q+LL+      +       + +G  PLH A   G+ +V + L+      + I N 
Sbjct: 84  HRDIVQKLLQYKADINAV------NEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNK 136

Query: 292 SDRSILHVAAKHGNWNIVSFILRSPEMENLINL-VDRNGNTPLHLAA 337
                +  A       +          E    +  + N   P     
Sbjct: 137 YGEMPVDKAKAPLRELLR---------ERAEKMGQNLN-RIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.7 bits (190), Expect = 2e-16
 Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 70/214 (32%)

Query: 78  TALHIAARIGDRAIVSEIMKYL-----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
             +    R G+   V    +         +NQ              D  G +PLH A   
Sbjct: 7   DDIFTQCREGNAVAV----RLWLDNTENDLNQ-------------GDDHGFSPLHWACRE 49

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
               V+ +L+ +                     AR+N     ++++            + 
Sbjct: 50  GRSAVVEMLIMR--------------------GARIN-----VMNR-----------GDD 73

Query: 193 TLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           T +H      + DI V+ L     +   I+ ++ H   PLHYA   G  ++A+ L+    
Sbjct: 74  TPLHLAASHGHRDI-VQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANG- 128

Query: 250 RLAY--KRDCNGETPLHLAAENGKLKVLKLLINK 281
             A     +  GE P+  A    +  + +     
Sbjct: 129 --ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 73/240 (30%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           +    R  N   +R  L            + L Q +    + LH A R G       +++
Sbjct: 9   IFTQCREGNAVAVRLWLDN--------TENDLNQGDDHGFSPLHWACREGRS----AVVE 56

Query: 98  YLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            L      +N               +   +TPLH A ++ H+ +++ L++  +  ++ +N
Sbjct: 57  MLIMRGARINV-------------MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VN 102

Query: 154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGT 213
           +    PL  A                                         D + + L  
Sbjct: 103 EHGNVPLHYAC------------------------------------FWGQDQVAEDLVA 126

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           N  L+   + +   P+  A A     + +R  +        ++ N   P       G  +
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEK------MGQNLN-RIPYKDTFWKGTTR 179

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 42/236 (17%), Positives = 78/236 (33%), Gaps = 45/236 (19%)

Query: 74  LMDETALHIAARIGDRAIVSEIMKYLPA-VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
           ++ E+ L +AA+  D   +S+++K+    V+Q                 G T LH A   
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLKFEGCEVHQ-------------RGAMGETALHIAALY 47

Query: 133 QHKRVIRILVEKD-SVPSSYINKAY---QTPLSIAIDARLNDIACFII-----------D 177
            +     +L+E    +    +       QT L IA+  +  ++   ++            
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAA 234
                     +      + F     + +I V++L   G +   I   D      LH    
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEI-VRLLIEHGAD---IRAQDSLGNTVLHILIL 163

Query: 235 SGNVKMAQRLLE---------ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
             N   A ++             K L    +  G TP  LA   G + + + L+ K
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 93.4 bits (233), Expect = 9e-22
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           PL  AA   +V+   +LL+      ++R   GET LH+AA    L+   +L+   P+ + 
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 288 IRNNSD----RSILHVAAKHGNWNIVSFIL----------RSPEMENLINLVDRNGNTPL 333
               S+    ++ LH+A  + N N+V  +L                   + +   G  PL
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLT 387
             AA     ++V  L  H   +IRA++     NT L I        K     + 
Sbjct: 126 SFAACVGSEEIVRLLIEHG-ADIRAQDSL--GNTVLHIL--ILQPNKTFACQMY 174

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 259 GETPLHLAAENGKLKVL-KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF-ILRSP 316
            E+PL LAA+   ++ L KLL  +  + +  R     + LH+AA + N       +  +P
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 317 E-MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKNHSARS--------- 365
           E +   +      G T LH+A +  + ++V  L     SV+ RA                
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 366 NTALEIAEITRANGKEIQKHL 386
              L  A       +EI + L
Sbjct: 122 EHPLSFA--ACVGSEEIVRLL 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 228 PLHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
            +H  AA G +      +E+          D  G TPL  AA +G++ V++ L+    D 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQE---NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD- 61

Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMG 339
            ++      S L +A   G  +IV         + L+      N  D NG TPL  A  G
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIV---------KMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
            H   V   L       I   +       A +     + ++
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.7 bits (211), Expect = 2e-19
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
                +H  A  G++  L   I +    I   +    + L  AA HG   +V F+L    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLL---- 56

Query: 318 MEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSARSNTAL 369
            +N     L+ +   + L LA    ++D+V  L      VN    N       A     +
Sbjct: 57  -QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 370 EIAEI 374
           +  ++
Sbjct: 116 KCVKM 120

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 83.2 bits (207), Expect = 7e-19
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 55/200 (27%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
            +  +H          +   +E+++V +   ++   TPL  A                  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWA------------------ 43

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNV 238
           + +                      +V+ L   G +      L   + + L  A + G  
Sbjct: 44  AAH------------------GQIAVVEFLLQNGAD---PQLLGKGRESALSLACSKGYT 82

Query: 239 KMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD 293
            + + LL+              D NG TPL  A     +K +K+L+    D   I  +S 
Sbjct: 83  DIVKMLLDCGVDVNEY------DWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSG 135

Query: 294 RSILHVAAKHGNWNIVSFIL 313
            + + +A   G  ++   I 
Sbjct: 136 YNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.5 bits (200), Expect = 6e-18
 Identities = 40/213 (18%), Positives = 72/213 (33%), Gaps = 67/213 (31%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKR 136
             ++H  A  G+   ++  ++    +N              TD EG TPL  A  +    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINH-------------TDEEGFTPLMWAAAHGQIA 50

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH 196
           V+  L++  + P   + K  ++ LS+A                                 
Sbjct: 51  VVEFLLQNGADPQL-LGKGRESALSLA------------------CSK------------ 79

Query: 197 FVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ES 248
                  Y  +VK+L   G +   ++  DW+   PL YA    +VK  + LLE       
Sbjct: 80  ------GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130

Query: 249 KRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           +        +G   + LA   G   V +++ + 
Sbjct: 131 E------TDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 64/182 (35%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
            +    T L  AA  G  A+V    ++L                            + L 
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVV----EFLLQNGADPQL-------------LGKGRESALS 74

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187
            A +  +  ++++L++     + Y +    TPL  A     N + C              
Sbjct: 75  LACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYA--VHGNHVKC-------------- 117

Query: 188 LPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
                               VK+L   G +  +     +   N +  A A G   + Q +
Sbjct: 118 --------------------VKMLLESGADPTIETDSGY---NSMDLAVALGYRSVQQVI 154

Query: 245 LE 246
             
Sbjct: 155 ES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 21/77 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
            +    T L  A        V    K L                     +    G   + 
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCV----KMLLESGADPT-------------IETDSGYNSMD 140

Query: 128 NAVTNQHKRVIRILVEK 144
            AV   ++ V +++   
Sbjct: 141 LAVALGYRSVQQVIESH 157

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.9 bits (241), Expect = 6e-23
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 22/206 (10%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
             + + +        D + + +  +K L  R D   R  LH+A ++G+ ++ + LL+   
Sbjct: 6   SNIMICNLAY-SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 247 --ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
               K      D  G +PLH+AA  G  +++K L+ K    +   N +  + LH AA   
Sbjct: 65  PVNDK------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKN 117

Query: 305 NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN--- 360
              I   +L   E     +  D    T +H AA   +  +V   L    S NI+      
Sbjct: 118 RHEIAVMLL---EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174

Query: 361 --HSARSNTALEIAEITRANGKEIQK 384
             H A     +E A+     G  I  
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYI 200

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.2 bits (234), Expect = 5e-22
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 33/240 (13%)

Query: 71  QKNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPL 126
           +  + +    ++A        + E+ + + A      +             TD +  T L
Sbjct: 2   EGCVSNIMICNLAYSGK----LDELKERILADKSLATR-------------TDQDSRTAL 44

Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLNDIACFIIDKSPESL 183
           H A +  H  ++  L++        +N       +PL IA  A  ++I   ++ K     
Sbjct: 45  HWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
              +  +  T +H+   +  ++I   +L       D  D +    +H AAA GN+KM   
Sbjct: 101 AVNQ--NGCTPLHYAASKNRHEI-AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303
           LL         +D  G TPLHLA +  +++  K L+ +    I I N  +++ L VA   
Sbjct: 158 LLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 46/222 (20%), Positives = 71/222 (31%), Gaps = 28/222 (12%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           +     +LA      ++ + ++          +   R+ LH A   G+  IV        
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIV-------- 56

Query: 318 MENLI------NLVDRNGNTPLHLAAM-GLHSDVVFTLSRHKSVNIRAKN-----HSARS 365
            E L+      N  D  G +PLH+AA  G    V   L +   VN   +N     H A S
Sbjct: 57  -EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

Query: 366 NTALEIAEITRANGKEIQK--HLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMA 423
               EIA +    G       H    A+  A AK  L    +    + S    +      
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175

Query: 424 QTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLLHRAS 465
             L+     +      A F +  G      ++   T L  A 
Sbjct: 176 LHLACDEERVE----EAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 34/186 (18%), Positives = 53/186 (28%), Gaps = 15/186 (8%)

Query: 290 NNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVV-F 346
             S+  I ++A       +   IL      +  L    D++  T LH A    H+++V F
Sbjct: 4   CVSNIMICNLAYSGKLDELKERIL-----ADKSLATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 347 TLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALS 401
            L     VN +        H A S    EI +     G  +            YA     
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 402 AEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAAFTIPGGVKSDGPDEGTATLL 461
            E      +       K    A  +   A             +     ++  D    T L
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAA--KGNLKMVHILLFYKASTNIQDTEGNTPL 176

Query: 462 HRASFQ 467
           H A  +
Sbjct: 177 HLACDE 182

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 96.9 bits (242), Expect = 6e-23
 Identities = 45/265 (16%), Positives = 74/265 (27%), Gaps = 54/265 (20%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDIAC---FI 175
           EG         + H            D      +   Y+TP   A  AR  D       +
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTA--ARKADEQALSQLL 65

Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYA 232
            D+  ++++     +  T + FV    +    V++L   G + +  D         LH A
Sbjct: 66  EDRDVDAVDE----NGRTALLFVAGLGSDKC-VRLLAEAGADLDHRDMRG--GLTALHMA 118

Query: 233 AASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
           A     ++ + L+E     E +      D  G T L LA E  K       +        
Sbjct: 119 AGYVRPEVVEALVELGADIEVE------DERGLTALELAREILKTTPKGNPMQF---GRR 169

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
           I        +          +             I      G    +L       D  + 
Sbjct: 170 I-GLEKVINVLEGQVFEYAEVDE-----------IVEKRGKGKDVEYLVRWKDGGDCEWV 217

Query: 348 LSRHKSVNIRAKNHSARSNTALEIA 372
              H +    AK++       LE A
Sbjct: 218 KGVHVA-EDVAKDY----EDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
             P   AA   + +   +LLE+        D NG T L   A  G  K ++LL     D 
Sbjct: 46  ETPWWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD- 102

Query: 286 IEIRNNSD-RSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGLHS 342
           ++ R+     + LH+AA +    +V  ++     E    I + D  G T L LA   L +
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKT 157

Query: 343 DVVFTLSRHKSVNIRAKN----HSARSNTALEIAEITRANGK 380
                        I  +        +     E+ EI    GK
Sbjct: 158 TPKGNP-MQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-I 286
                   G+          +  +        ETP   AA     + L  L+    D  +
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE---DRDV 70

Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN--LINLVD-RNGNTPLHLAAMGLHSD 343
           +  + + R+ L   A  G+   V  +      E    ++  D R G T LH+AA  +  +
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLA-----EAGADLDHRDMRGGLTALHMAAGYVRPE 125

Query: 344 VVFTLSRHK-SVNIRAKN-----HSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK 397
           VV  L      + +  +        AR              G+ I     +  L+    +
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185

Query: 398 RALSAEELQQK 408
            A   E ++++
Sbjct: 186 YAEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 31/268 (11%), Positives = 63/268 (23%), Gaps = 80/268 (29%)

Query: 76  DETALHIAARIGDRAIVSEIMKYL---PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            ET    AAR  D     + +  L     V+               D  G T L      
Sbjct: 45  YETPWWTAARKADE----QALSQLLEDRDVDA-------------VDENGRTALLFVAGL 87

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
              + +R+L E  +       +   T L +A  A                          
Sbjct: 88  GSDKCVRLLAEAGADLDHRDMRGGLTALHMA--AGYVRPEV------------------- 126

Query: 193 TLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
                          V+ L   G + E+ D         L  A            ++  +
Sbjct: 127 ---------------VEALVELGADIEVEDE---RGLTALELAREILKTTPKGNPMQFGR 168

Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
           R+  +        +         +V +++          +    + + ++       +  
Sbjct: 169 RIGLE----KVINVLEGQVFEYAEVDEIV---------EKRGKGKDVEYLVRWKDGGDCE 215

Query: 310 SFILRSPEMENLINLVDRNGNTPLHLAA 337
                     ++   V ++    L  A 
Sbjct: 216 WVKG-----VHVAEDVAKDYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 17/132 (12%)

Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310
           +  +    G     +  ++G             D      +   +    AA+  +   +S
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 62

Query: 311 FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN--------HS 362
            +L   +    ++ VD NG T L   A       V  L+     ++  ++        H 
Sbjct: 63  QLLEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHM 117

Query: 363 ARSNTALEIAEI 374
           A      E+ E 
Sbjct: 118 AAGYVRPEVVEA 129

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 42/202 (20%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIE-GNTPLHNAVTNQHK 135
            TAL   A +G    V  + +    ++               D+  G T LH A      
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAGADLDH-------------RDMRGGLTALHMAAGYVRP 124

Query: 136 RVIRILVEK--DSVPSSYIN---KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPD 190
            V+  LVE   D      I    +   T L +A +          +      +   ++ +
Sbjct: 125 EVVEALVELGAD------IEVEDERGLTALELAREILKTTPKGNPMQFGRR-IGLEKVIN 177

Query: 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
            L    F      Y  + +I+              ++  +                    
Sbjct: 178 VLEGQVF-----EYAEVDEIVEKRG--------KGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 251 LAYKRDCNGETPLHLAAENGKL 272
              K   + E  L  A     +
Sbjct: 225 DVAK---DYEDGLEYAVAESVI 243

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.5 bits (241), Expect = 8e-23
 Identities = 36/273 (13%), Positives = 74/273 (27%), Gaps = 67/273 (24%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFII 176
           +I G   L        ++     +          N      L  +  +     D+   II
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDS--SLEGEFDLVQRII 57

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
            +                                   +  L +         LH A  +G
Sbjct: 58  YE---------------------------------VDDPSLPNDEGI---TALHNAVCAG 81

Query: 237 NVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
           + ++ + L++      +       D +G TPLH AA    ++V K L+      +     
Sbjct: 82  HTEIVKFLVQFGVNVNAA------DSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTY 134

Query: 292 SD---RSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           SD    +      + G      F+     ++  + ++++     L         ++   +
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLY---GVQEKMGIMNKGVIYALWDYEPQNDDEL--PM 189

Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKE 381
                + I  +            A   R N KE
Sbjct: 190 KEGDCMTIIHREDEDE--IEWWWA---RLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 37/267 (13%), Positives = 74/267 (27%), Gaps = 82/267 (30%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKR 136
              L  ++  G+  +V  I+  +   +               + EG T LHNAV   H  
Sbjct: 38  LALLLDSSLEGEFDLVQRIIYEVDDPSL-------------PNDEGITALHNAVCAGHTE 84

Query: 137 VIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDKSPESLNTTRLPDE 191
           +++ LV+        +N A     TPL  A  A  N   +  F+++              
Sbjct: 85  IVKFLVQFG----VNVNAADSDGWTPLHCA--ASCNNVQVCKFLVES------------- 125

Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
                               G     +   D             G  + +Q L    +++
Sbjct: 126 --------------------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
               +      L         ++             ++     +I+H      + + + +
Sbjct: 166 GIM-NKGVIYALWDYEPQNDDELP------------MKEGDCMTIIH----REDEDEIEW 208

Query: 312 ILRSPEMENLINLVDRNGNTPLHLAAM 338
                       L D+ G  P +L  +
Sbjct: 209 W--------WARLNDKEGYVPRNLLGL 227

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 35/165 (21%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            L  AA +G     + L+       ++      D +G TPLHLAA NG L+++++L+   
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAE------DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLA 336
            D +   +++  + L +AA  G+  IV         E L+      N  D  G+TPLHLA
Sbjct: 71  AD-VNAVDHAGMTPLRLAALFGHLEIV---------EVLLKNGADVNANDMEGHTPLHLA 120

Query: 337 AMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
           AM  H ++V  L ++   ++ A++         +  N   ++AEI
Sbjct: 121 AMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 81.3 bits (202), Expect = 3e-18
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 59/202 (29%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLN--DIACFII 176
               L  A        +RIL+   +     +N       TPL +A  A     +I   ++
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGA----DVNAEDASGWTPLHLA--AFNGHLEIVEVLL 67

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
                                              G +   ++ +D     PL  AA  G
Sbjct: 68  KN---------------------------------GAD---VNAVDHAGMTPLRLAALFG 91

Query: 237 NVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
           ++++ + LL+      +       D  G TPLHLAA  G L+++++L+    D +  ++ 
Sbjct: 92  HLEIVEVLLKNGADVNAN------DMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDK 144

Query: 292 SDRSILHVAAKHGNWNIVSFIL 313
             ++   ++  +GN ++   + 
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 2e-17
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 24/132 (18%)

Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
             +    L  AA  G+   +++L+    D +   + S  + LH+AA +G+  IV      
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIV------ 63

Query: 316 PEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HS 362
              E L+      N VD  G TPL LAA+  H ++V  L ++   ++ A +       H 
Sbjct: 64  ---EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHL 119

Query: 363 ARSNTALEIAEI 374
           A     LEI E+
Sbjct: 120 AAMFGHLEIVEV 131

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 79/218 (36%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
             L  AAR G    V    + L A    VN               D  G TPLH A  N 
Sbjct: 16  KKLLEAARAGRDDEV----RILMANGADVNA-------------EDASGWTPLHLAAFNG 58

Query: 134 HKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLN--DIACFIIDKSPESLNTTRL 188
           H  ++ +L++  +     +N       TPL +A  A     +I   ++            
Sbjct: 59  HLEIVEVLLKNGA----DVNAVDHAGMTPLRLA--ALFGHLEIVEVLLKN---------- 102

Query: 189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-- 246
                                  G +   ++  D     PLH AA  G++++ + LL+  
Sbjct: 103 -----------------------GAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 247 ---ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
               ++      D  G+T   ++ +NG   + ++L   
Sbjct: 137 ADVNAQ------DKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
            ++   T LH+AA  G      EI++ L      VN               D  G T   
Sbjct: 109 NDMEGHTPLHLAAMFGHL----EIVEVLLKNGADVNA-------------QDKFGKTAFD 151

Query: 128 NAVTNQHKRVIRILVEKD 145
            ++ N ++ +  IL + +
Sbjct: 152 ISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 68/184 (36%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           ++    T LH+AA  G      EI++ L      VN               D  G TPL 
Sbjct: 43  EDASGWTPLHLAAFNGHL----EIVEVLLKNGADVNA-------------VDHAGMTPLR 85

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDKSPES 182
            A    H  ++ +L++      + +N       TPL +A  A     +I   ++      
Sbjct: 86  LAALFGHLEIVEVLLKNG----ADVNANDMEGHTPLHLA--AMFGHLEIVEVLLKN---- 135

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                                        G +    D+           +  +GN  +A+
Sbjct: 136 -----------------------------GADVNAQDKFGK---TAFDISIDNGNEDLAE 163

Query: 243 RLLE 246
            L +
Sbjct: 164 ILQK 167

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 91.3 bits (228), Expect = 4e-22
 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 19/125 (15%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
           PLH AA +G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENL--INLVDRNGNTPLHLAAMGL 340
            D +  ++ + R+ LH+AA++G+  +V  +L     E    +N  D+NG TPLHLAA   
Sbjct: 59  AD-VNAKDKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNG 112

Query: 341 HSDVV 345
           H +VV
Sbjct: 113 HLEVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.7 bits (198), Expect = 4e-18
 Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 12/124 (9%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  ++ + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALE 370
               +N  D+NG TPLHLAA   H +VV  L      ++ AK+       H A  N  LE
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLE 115

Query: 371 IAEI 374
           + ++
Sbjct: 116 VVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 6e-16
 Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 18/115 (15%)

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCN 258
           +VK+L   G +   ++  D + R PLH AA +G++++ + LLE      +K      D N
Sbjct: 17  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKN 67

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           G TPLHLAA NG L+V+KLL+    D +  ++ + R+ LH+AA++G+  +V  +L
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 4e-14
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 60/171 (35%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDIACFIIDK 178
           G TPLH A  N H  V+++L+E  +     +N      +TPL +A               
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLA--------------- 42

Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
              + N                   +  +VK+L   G +    D+       PLH AA +
Sbjct: 43  ---ARN------------------GHLEVVKLLLEAGADVNAKDKNGR---TPLHLAARN 78

Query: 236 GNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+  
Sbjct: 79  GHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 5e-06
 Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 72/181 (39%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            T LH+AAR G   +V    K L      VN               D  G TPLH A  N
Sbjct: 3   RTPLHLAARNGHLEVV----KLLLEAGADVNA-------------KDKNGRTPLHLAARN 45

Query: 133 QHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLN--DIACFIIDKSPESLNT 185
            H  V+++L+E   D      +N      +TPL +A  AR    ++   +++        
Sbjct: 46  GHLEVVKLLLEAGAD------VNAKDKNGRTPLHLA--ARNGHLEVVKLLLEA------- 90

Query: 186 TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
                                     G +    D+       PLH AA +G++++ + LL
Sbjct: 91  --------------------------GADVNAKDKNGR---TPLHLAARNGHLEVVKLLL 121

Query: 246 E 246
           E
Sbjct: 122 E 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 21/77 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K+    T LH+AAR G   +V    K L      VN               D  G TPLH
Sbjct: 64  KDKNGRTPLHLAARNGHLEVV----KLLLEAGADVNA-------------KDKNGRTPLH 106

Query: 128 NAVTNQHKRVIRILVEK 144
            A  N H  V+++L+E 
Sbjct: 107 LAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 9e-05
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 32/101 (31%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K+    T LH+AAR G   +V    K L      VN               D  G TPLH
Sbjct: 31  KDKNGRTPLHLAARNGHLEVV----KLLLEAGADVNA-------------KDKNGRTPLH 73

Query: 128 NAVTNQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIA 163
            A  N H  V+++L+E   D      +N      +TPL +A
Sbjct: 74  LAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLA 108

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 95.2 bits (237), Expect = 4e-22
 Identities = 43/317 (13%), Positives = 84/317 (26%), Gaps = 95/317 (29%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ-- 133
           +   L      G    +  ++ +L          + +  FR     G T L  A+ N   
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFL---LTHK-KRLTDEEFREPS-TGKTCLPKALLNLSA 59

Query: 134 -HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
                I IL                    + I  +  ++  FI                 
Sbjct: 60  GRNDTIPIL--------------------LDIAEKTGNMREFINSP-------------- 85

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE------ 246
                                       + +  +  LH A         + L+E      
Sbjct: 86  -------------------------FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 247 -------ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA--IEIRNNSDRSIL 297
                     +        GE PL LAA   +  ++  L         +  +++   ++L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 298 HVAAKHGN---------WNIVSFIL----RSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
           H      +           +   +L    +     NL  L++ +G +PL +AA      +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

Query: 345 VFTLSRHKSVNIRAKNH 361
              + R +  +  A +H
Sbjct: 241 FQHIIRREIADAAAHHH 257

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.8 bits (215), Expect = 3e-19
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 47/229 (20%)

Query: 202 QNYDIMVKILGTNKELIDRLDWHQRN----PLHYAA---ASGNVKMAQRLLEESKRLAYK 254
              + ++  L T+K+ +   ++ + +     L  A    ++G       LL+ +++    
Sbjct: 19  DGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM 78

Query: 255 ----------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-------- 296
                         G+T LH+A E      ++LL+ K  D +  +               
Sbjct: 79  REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYF 137

Query: 297 ------LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT--- 347
                 L +AA     +IV ++  +   +  +   D  GNT LH       +    T   
Sbjct: 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197

Query: 348 -------LSRHKSVNIRAKNHSARSN---TALEIAEITRANGKEIQKHL 386
                  L +   +       +  +N   + L +A   +     I +H+
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA--AKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 36/198 (18%)

Query: 4   ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQ------Q 57
           + + +L    E            F      G   LH+A+  R +  +  ++ +      Q
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 58  DFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM 117
                              E  L +AA          I+ YL   N    A +     R 
Sbjct: 123 A-RGRFFQPKDEGGYFYFGELPLSLAACTNQP----HIVHYLTE-NGHKQADL-----RR 171

Query: 118 TDIEGNTPLHNAVTNQHKR---------VIRILVEKD------SVPSSYINKAYQTPLSI 162
            D  GNT LH  V               +  +L+ K       +   + +N    +PL +
Sbjct: 172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 163 AIDARLN--DIACFIIDK 178
           A  A+     I   II +
Sbjct: 232 A--AKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 21/117 (17%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD--------- 88
           L +A       ++  +       A       LR+++    T LH    I D         
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQAD------LRRQDSRGNTVLHALVAIADNTRENTKFV 197

Query: 89  RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKD 145
             +   ++     +          +L  + + +G +PL  A       + + ++ ++
Sbjct: 198 TKMYDLLLIKCAKLFP------DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.5 bits (231), Expect = 6e-22
 Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 76/241 (31%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
           D  G             + +  L         Y +   +TPL +A               
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVAC-------------- 43

Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                                     +  +  L         ++  D      L +A  +
Sbjct: 44  ----------------------MLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKN 78

Query: 236 GNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
             + +A++LL       +K      D +G+TPL  +   G  ++   L+    + +  RN
Sbjct: 79  NRLGIAEKLLSKGSNVNTK------DFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRN 131

Query: 291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDV 344
               + L VA+K+G   IV         + L+      +  D  G T    A +    +V
Sbjct: 132 LEGETPLIVASKYGRSEIV---------KKLLELGADISARDLTGLTAEASARIFGRQEV 182

Query: 345 V 345
           +
Sbjct: 183 I 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.4 bits (223), Expect = 9e-21
 Identities = 41/244 (16%), Positives = 69/244 (28%), Gaps = 80/244 (32%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKR 136
           E    I         +                   + L    D    TPL  A     + 
Sbjct: 9   EIVEKIKDEKSINQNL-------------------DFLRNYRDSYNRTPLMVACMLGMEN 49

Query: 137 VIRILVEKDSVPSSYINKAY---QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT 193
            I  LVE        +        T L  A+                             
Sbjct: 50  AIDKLVENFD----KLEDKDIEGSTALIWAV----------------------------- 76

Query: 194 LIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---- 246
                  + N   + + L   G+N    D        PL ++   G  +M+  LLE    
Sbjct: 77  -------KNNRLGIAEKLLSKGSNVNTKDFSGK---TPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 247 -ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
              +      +  GETPL +A++ G+ +++K L+    D I  R+ +  +    A   G 
Sbjct: 127 VNDR------NLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGR 179

Query: 306 WNIV 309
             ++
Sbjct: 180 QEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.7 bits (190), Expect = 2e-16
 Identities = 40/227 (17%), Positives = 65/227 (28%), Gaps = 89/227 (39%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           ++  + T L +A  +G        +  L      +                DIEG+T L 
Sbjct: 31  RDSYNRTPLMVACMLGME----NAIDKLVENFDKLED-------------KDIEGSTALI 73

Query: 128 NAVTNQHKRVIRILV-------EKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
            AV N    +   L+        KD         + +TPL  +I                
Sbjct: 74  WAVKNNRLGIAEKLLSKGSNVNTKD--------FSGKTPLMWSI---------------- 109

Query: 181 ESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGN 237
                                  Y  M   L   G N    +        PL  A+  G 
Sbjct: 110 --------------------IFGYSEMSYFLLEHGANVNDRNLEGE---TPLIVASKYGR 146

Query: 238 VKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
            ++ ++LLE      ++      D  G T    A   G+ +V+K+  
Sbjct: 147 SEIVKKLLELGADISAR------DLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
             + +   +  +  +      +         + L N  D    TPL +A M    + +  
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNL---------DFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           L  +    +  K+      TAL  A   + N   I + L
Sbjct: 54  LVENF-DKLEDKDIEGS--TALIWA--VKNNRLGIAEKL 87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 38/178 (21%)

Query: 190 DELTLIHFVVMRQNYDIMVKIL----GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
           +    +       + +  VK L      N      ++  Q  PLH+AA    V + + LL
Sbjct: 7   EADRQLLEAAKAGDVET-VKKLCTVQSVN---CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 246 E-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-IEIRNNSDRSILHV 299
           +      +K      D  G  PLH A   G  +V +LL+     A + + +    + LH 
Sbjct: 63  QHGADVHAK------DKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHE 114

Query: 300 AAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           AA  G + I          + L+         +R+GNTPL L   G  +D+   L   
Sbjct: 115 AAAKGKYEIC---------KLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.4 bits (192), Expect = 6e-17
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
             +  L  AA+ G ++ +K L                + LH AA +   ++V        
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-------- 58

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSAR 364
            E L+      +  D+ G  PLH A    H +V   L +H    +   +       H A 
Sbjct: 59  -EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAA 116

Query: 365 SNTALEIAEI 374
           +    EI ++
Sbjct: 117 AKGKYEICKL 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 73/221 (33%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYL---PAVNQVGPAPVLESLFRMTDIEGNTPLHN 128
            N   +  L  AA+ GD     E +K L    +VN            R  +   +TPLH 
Sbjct: 4   GNSEADRQLLEAAKAGDV----ETVKKLCTVQSVN-----------CRDIEGRQSTPLHF 48

Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL 188
           A       V+  L++         + A        + A+         DK          
Sbjct: 49  AAGYNRVSVVEYLLQ---------HGAD-------VHAK---------DK---------- 73

Query: 189 PDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
              L  +H      +Y++  ++L   G     ++  D  +  PLH AAA G  ++ + LL
Sbjct: 74  -GGLVPLHNACSYGHYEV-AELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLL 128

Query: 246 E-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           +       K      + +G TPL L   +G   +  LL   
Sbjct: 129 QHGADPTKK------NRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.1 bits (103), Expect = 4e-05
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
            +   +  L  AA     + V  L   +SVN R          H A     + + E 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 91.8 bits (228), Expect = 5e-21
 Identities = 43/273 (15%), Positives = 97/273 (35%), Gaps = 40/273 (14%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           L   V     + +  +L    + +  L  S    +    +T L  A  +  +  V+  + 
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSA-YTEGSTGKTCLMKAV-LNLQDGVNACIM 63

Query: 98  YL--PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK----------- 144
            L     +   P P++ +       +G++ LH A+  +  + +++LVE            
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 145 -DSVPSSYINKAYQTPLSIAIDARLN--DIACFIIDKSPESLNTTRL-PDELTLIHFVVM 200
                        + PLS+A  A     D+  ++++   +  +         T++H +VM
Sbjct: 124 FFQKHQGTCFYFGELPLSLA--ACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
             +                  +  + + L      G ++M  RL    +      +  G 
Sbjct: 182 IAD------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGL 222

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD 293
           TPL LAA+ GK+++ + ++ +        ++  
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 34/188 (18%)

Query: 226 RNPLHYAAASGNVKMAQRLLEE----SKRLA---YKRDCNGETPLHLAA---ENGKLKVL 275
           R+ L    + G  +    LLE     SK L    Y     G+T L  A    ++G    +
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 276 KLLINKYPDA----------IEIRNNSDRSILHVAAKHGNWNIVSFIL----------RS 315
             L+    D+                   S LH+A +  +   V  ++            
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH--KSVNIRAKNHSARSNTALEIAE 373
              +         G  PL LAA     DVV  L  +  +  ++ A +     NT L    
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS--LGNTVLHALV 180

Query: 374 ITRANGKE 381
           +   N  E
Sbjct: 181 MIADNSPE 188

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.8 bits (223), Expect = 3e-20
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 45/223 (20%)

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDW--HQRN-----PLHYAAAS---GNVKMAQ 242
             +  VV R   + +  +L   +     L    +         L  A  +   G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 243 RLLEESKRLAY----------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
            LL+  K                   G + LH+A E   L+ +KLL+    D + +R   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACG 122

Query: 293 DRSI-------------LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
                            L +AA    W++V+++L +P     +   D  GNT LH   M 
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 340 LHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEI 382
             +    +                  +  L++        +  
Sbjct: 183 ADNSPENS-----------ALVIHMYDGLLQMGARLCPTVQLE 214

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.1 bits (221), Expect = 5e-20
 Identities = 52/293 (17%), Positives = 87/293 (29%), Gaps = 76/293 (25%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ-- 133
           D   L      G    ++ +++YL   ++                 G T L  AV N   
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-----GSTGKTCLMKAVLNLQD 56

Query: 134 -HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
                I  L++ D                  ++A+  D                      
Sbjct: 57  GVNACIMPLLQID---------KDSGNPKPLVNAQCTDEFY----------------QGH 91

Query: 193 TLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRN----------PLHYAAASGNVK 239
           + +H  + +++    VK+L   G +  L     + Q++          PL  AA +    
Sbjct: 92  SALHIAIEKRSLQC-VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 240 MAQRLLEESKRLAY--KRDCNGETPLHL----------------AAENGKLKVLKLLINK 281
           +   LLE   + A     D  G T LH                    +G L++   L   
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

Query: 282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
                EI N+   + L +AAK G   I   IL+           + +G    H
Sbjct: 211 VQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQR----------EFSGAAAHH 252

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 88.3 bits (220), Expect = 6e-21
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETPLHLAAENGKLKVL 275
           I  L       L  AAA G V+  ++LLE     A     +  G  P+ +    G  +V 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 276 KLLINKYPDAIEIRNNSDRSI-LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
           +LL+    +     + +  +  +H AA+ G  + +  +         +++ D  G  P+ 
Sbjct: 61  ELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLH---RAGARLDVCDAWGRLPVD 116

Query: 335 LAAMGLHSDVV 345
           LA    H D+ 
Sbjct: 117 LAEEQGHRDIA 127

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 16/135 (11%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
               + +  L  AA  G+++ ++ L+    D     N   R  + V    G+  +   +L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 314 RSPEMEN--LINLVDRNGNT-PLHLAAMGLHSDVVFTLSRHK-SVNIRAKN-----HSAR 364
                 +    N  D    T P+H AA     D +  L R    +++           A 
Sbjct: 65  -----LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 365 SNTALEIAEITRANG 379
                +IA    A  
Sbjct: 120 EQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 44/166 (26%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
               +  L  A        +R L+E  + P++ +N+  + P+ + +              
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM-------------- 53

Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                                       + ++L   G      D        P+H AA  
Sbjct: 54  -----------------------MGSAQVAELLLLHGAEPNCADPATL--TRPVHDAARE 88

Query: 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           G +     L     RL    D  G  P+ LA E G   + + L   
Sbjct: 89  GFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 27/182 (14%), Positives = 46/182 (25%), Gaps = 64/182 (35%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
                +  L  AA  G    V    + L       N +             +  G  P+ 
Sbjct: 8   LGGSSDAGLATAAARGQVETV----RQLLEAGADPNAL-------------NRFGRRPIQ 50

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187
             +     +V  +L+   + P+         P+  A  AR                    
Sbjct: 51  VMMMG-SAQVAELLLLHGAEPNCADPATLTRPVHDA--AREG------------------ 89

Query: 188 LPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
                            D  + +L   G     +D  D   R P+  A   G+  +A+ L
Sbjct: 90  ---------------FLDT-LVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYL 130

Query: 245 LE 246
             
Sbjct: 131 HA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 322 INLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIAEITRANG- 379
           I+++  + +  L  AA     + V   L      N   +         +++       G 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG----RRPIQVM----MMGS 56

Query: 380 KEIQKHL 386
            ++ + L
Sbjct: 57  AQVAELL 63

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 21/71 (29%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
             +H AAR G      + +  L      ++               D  G  P+  A    
Sbjct: 80  RPVHDAAREGFL----DTLVVLHRAGARLDV-------------CDAWGRLPVDLAEEQG 122

Query: 134 HKRVIRILVEK 144
           H+ + R L   
Sbjct: 123 HRDIARYLHAA 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.5 bits (218), Expect = 6e-21
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 27/131 (20%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
                +A  +G++   +  +                  G  PLH AA+ G+L++L+ L+ 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRT------LEGGRKPLHYAADCGQLEILEFLLL 61

Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLH 334
           K  D I   +    + L  A   G+ + V           L+       +   +G T   
Sbjct: 62  KGAD-INAPDKHHITPLLSAVYEGHVSCVKL---------LLSKGADKTVKGPDGLTAFE 111

Query: 335 LAAMGLHSDVV 345
                    ++
Sbjct: 112 ATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 3e-18
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
             +     A +NG L  +K  + K  D +       R  LH AA  G   I+ F+L    
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLL---L 61

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKNHSARSNTALEIA 372
               IN  D++  TPL  A    H   V   LS+     ++  +      TA E  
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----GLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYK--RDCNGET 261
            VK     G +             PLHYAA  G +++ + LL +    A     D +  T
Sbjct: 22  EVKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKG---ADINAPDKHHIT 75

Query: 262 PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
           PL  A   G +  +KLL++K  D   ++     +            ++
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 60/166 (36%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN---KAYQTPLSIAIDARLNDIACFIIDK 178
            +     A+ N     ++  V K       +N   +  + PL  A               
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGE----DVNRTLEGGRKPLHYA--------------- 47

Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
              +                        +++ L   G +   I+  D H   PL  A   
Sbjct: 48  ---ADC------------------GQLEILEFLLLKGAD---INAPDKHHITPLLSAVYE 83

Query: 236 GNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLK 276
           G+V   + LL        K        +G T            +L+
Sbjct: 84  GHVSCVKLLLSKGADKTVK------GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 28/94 (29%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
           +     A + GD   V    K   A    VN+             T   G  PLH A   
Sbjct: 8   DKEFMWALKNGDLDEV----KDYVAKGEDVNR-------------TLEGGRKPLHYAADC 50

Query: 133 QHKRVIRILVEKDSVPSSYINKA---YQTPLSIA 163
               ++  L+ K     + IN     + TPL  A
Sbjct: 51  GQLEILEFLLLKG----ADINAPDKHHITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 9e-06
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 21/97 (21%)

Query: 290 NNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSD 343
            +        A K+G+ + V         ++ +      N     G  PLH AA     +
Sbjct: 4   GSMCDKEFMWALKNGDLDEV---------KDYVAKGEDVNRTLEGGRKPLHYAADCGQLE 54

Query: 344 VVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEI 374
           ++  L    + +N   K+      SA     +   ++
Sbjct: 55  ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 22/90 (24%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
             LH AA  G      EI+++L      +N               D    TPL +AV   
Sbjct: 42  KPLHYAADCGQ----LEILEFLLLKGADINA-------------PDKHHITPLLSAVYEG 84

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
           H   +++L+ K +  +        T     
Sbjct: 85  HVSCVKLLLSKGADKTV-KGPDGLTAFEAT 113

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 228 PLHYAAASGNVKMAQRLLE----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
           P   AA   + +   +LLE    ++       D NG T L   A  G  K ++LL     
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVDAV------DENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 284 DAIEIRNNSD-RSILHVAAKHGNWNIVSFILRSPEMEN--LINLVDRNGNTPLHLAAMGL 340
           D ++ R+     + LH+AA +    +V  ++     E    I + D  G T L LA   L
Sbjct: 101 D-LDHRDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREIL 154

Query: 341 HSDVVFTL 348
            +      
Sbjct: 155 KTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.5 bits (210), Expect = 4e-19
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 46/198 (23%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDIACFI 175
           T  EG         + H            D      +   Y+TP   A  AR  D     
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTA--ARKADEQ--- 58

Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235
                             L+                  +   +D +D + R  L + A  
Sbjct: 59  ---------ALSQ-----LLE---------------DRD---VDAVDENGRTALLFVAGL 86

Query: 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295
           G+ K  + L E    L ++    G T LH+AA   + +V++ L+    D IE+ +    +
Sbjct: 87  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLT 145

Query: 296 ILHVAAKHGNWNIVSFIL 313
            L +A +          +
Sbjct: 146 ALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 246 EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
           E +K +  +    G     +  ++G             D      +   +    AA+  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARS 365
              +S +L   +    ++ VD NG T L   A       V  L+     ++  ++     
Sbjct: 57  EQALSQLLEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGL 111

Query: 366 NTALEIAEITRANGKEIQKHL 386
            TAL +A        E+ + L
Sbjct: 112 -TALHMA--AGYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 32/219 (14%), Positives = 48/219 (21%), Gaps = 94/219 (42%)

Query: 76  DETALHIAARIGDRAIVSEIMKYL---PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            ET    AAR  D     + +  L     V+ V             D  G T L      
Sbjct: 44  YETPWWTAARKADE----QALSQLLEDRDVDAV-------------DENGRTALLFVAGL 86

Query: 133 QHKRVIRILV-------EKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT 185
              + +R+L         +D        +   T L +A  A                   
Sbjct: 87  GSDKCVRLLAEAGADLDHRD-------MRGGLTALHMA--AGYVRPEV------------ 125

Query: 186 TRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                                 V+ L   G + E+ D         L  A          
Sbjct: 126 ----------------------VEALVELGADIEVEDE---RGLTALELAREILKTTPK- 159

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
                              P+      G  KV+ +L  +
Sbjct: 160 -----------------GNPMQFGRRIGLEKVINVLEGQ 181

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 27/135 (20%)

Query: 222 DWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLK 276
           DW   +PLH AA  G+    + LL      +++           TPLH+AA  G   +++
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR------TKVDRTPLHMAASEGHANIVE 84

Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGN 330
           +L+    D +  ++    + LH A +H +  +V         E LI      +   +   
Sbjct: 85  VLLKHGAD-VNAKDMLKMTALHWATEHNHQEVV---------ELLIKYGADVHTQSKFCK 134

Query: 331 TPLHLAAMGLHSDVV 345
           T   ++    + D+ 
Sbjct: 135 TAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 58/198 (29%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY--QTPLSIAIDARLN--DIACFII 176
           +    L  A        +RIL+   +         +   +PL +A  A+         ++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA----PFTTDWLGTSPLHLA--AQYGHFSTTEVLL 54

Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
                                              G +    D      R PLH AA+ G
Sbjct: 55  RA---------------------------------GVS---RDARTKVDRTPLHMAASEG 78

Query: 237 NVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
           +  + + LL+      +K      D    T LH A E+   +V++LLI    D +  ++ 
Sbjct: 79  HANIVEVLLKHGADVNAK------DMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSK 131

Query: 292 SDRSILHVAAKHGNWNIV 309
             ++   ++  +GN ++ 
Sbjct: 132 FCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.3 bits (184), Expect = 5e-16
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 25/130 (19%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           +    L  AA  G+   +++L+     A    +    S LH+AA++G+++          
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTT-------- 50

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSAR 364
            E L+      +   +   TPLH+AA   H+++V  L +H   ++ AK+       H A 
Sbjct: 51  -EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWAT 108

Query: 365 SNTALEIAEI 374
            +   E+ E+
Sbjct: 109 EHNHQEVVEL 118

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 1e-14
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 82/217 (37%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
              L  AAR G      + ++ L A                    TD  G +PLH A   
Sbjct: 3   GKKLLEAARAGQD----DEVRILMANGAPFT--------------TDWLGTSPLHLAAQY 44

Query: 133 QHKRVIRILVEKDSVPSSYIN---KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP 189
            H     +L+          +   K  +TPL +A                          
Sbjct: 45  GHFSTTEVLLRAGV----SRDARTKVDRTPLHMAA------------------------- 75

Query: 190 DELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                       + +  +V++L   G +   ++  D  +   LH+A    + ++ + L++
Sbjct: 76  -----------SEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 247 -----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
                 ++          +T   ++ +NG   + ++L
Sbjct: 122 YGADVHTQ------SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 28/101 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           +  +D T LH+AA  G       I++ L      VN               D+   T LH
Sbjct: 63  RTKVDRTPLHMAASEGHA----NIVEVLLKHGADVNA-------------KDMLKMTALH 105

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAY---QTPLSIAID 165
            A  + H+ V+ +L++      + ++      +T   I+ID
Sbjct: 106 WATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISID 142

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.1 bits (103), Expect = 4e-05
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 64/180 (35%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
            + +  + LH+AA+ G         + L       +                    TPLH
Sbjct: 30  TDWLGTSPLHLAAQYGHF----STTEVLLRAGVSRDA-------------RTKVDRTPLH 72

Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187
            A +  H  ++ +L++      + +N                       D          
Sbjct: 73  MAASEGHANIVEVLLKHG----ADVNAK---------------------DM--------- 98

Query: 188 LPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
              ++T +H+     + ++ V++L   G +     +           +  +GN  +A+ L
Sbjct: 99  --LKMTALHWATEHNHQEV-VELLIKYGADVHTQSKFCK---TAFDISIDNGNEDLAEIL 152

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA----AASGNVKMAQRLL 245
            E   +    M   Y+  +++     E  +     + N L+            K++  L+
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKE--SVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 246 E-----ESKRLAYKRDCNGETPLHLAAENGKLKV------LKLLINKYPDAIEIRNNSDR 294
                 +S+         G T      + G   +       K+ + K  D I       +
Sbjct: 63  NKGADIKSR------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYK 115

Query: 295 SILHVAAKHGNWN------IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
            ++     +   +      +   I     ++  + + D+ G T L           +  +
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--LLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 349 SRHKS-VNIRAKN 360
             +    N++  +
Sbjct: 174 EDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 32/230 (13%), Positives = 55/230 (23%), Gaps = 55/230 (23%)

Query: 73  NLMDE-TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
           N M E   +  AA +G      E+ +      +                     L N   
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK----------SNILYDVLRNNND 51

Query: 132 NQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191
               ++   L+ K +   S   K   T          NDI                    
Sbjct: 52  EARYKISMFLINKGADIKS-RTKEGTTLFFPLFQGGGNDITGTTE--------------- 95

Query: 192 LTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248
                          + KI    G +   I  L    +  +     +  V   + +    
Sbjct: 96  ---------------LCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 249 KRLAYK------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
              +        +D  G T L       K   LK++ +       ++ NS
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK-YNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 23/224 (10%), Positives = 49/224 (21%), Gaps = 73/224 (32%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           +  A      +   E+  +       +  S            L+   R  +     +I  
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKS----------NILYDVLRNNNDEARYKISM 59

Query: 98  YLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK------RVIRILVEK--D 145
           +L      +                  EG T                  + +I +EK  D
Sbjct: 60  FLINKGADIKS-------------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD 106

Query: 146 SVPSSYIN---KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQ 202
                 I    K Y+  +   I     D                   + + L   +  + 
Sbjct: 107 ------ITALYKPYKIVVFKNIFNYFVDEN-----------------EMIPLYKLIFSQS 143

Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
              +++K            D      L +          + + +
Sbjct: 144 GLQLLIK------------DKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 12/117 (10%), Positives = 26/117 (22%), Gaps = 21/117 (17%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQ------KNLMDETALHIAARIG 87
           G  +     +     +       +           L +           +  +       
Sbjct: 75  GTTLFFPLFQGGGNDITGTTELCK---------IFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 88  DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK 144
                  I  Y    +Q G   +L       D  G T L      Q    ++++ + 
Sbjct: 126 FVDENEMIPLYKLIFSQSG-LQLLI-----KDKWGLTALEFVKRCQKPIALKMMEDY 176

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.8 bits (206), Expect = 3e-19
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
                 +G TPLH AA+NG  + +K L++K  D +  R+    + LH+AAK+G+  IV  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 312 ILRSPEMEN--LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTAL 369
           +L          +N   ++GNTP HLA    H ++V  L      ++ A++  +      
Sbjct: 61  LL-----AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSS--HHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.7 bits (203), Expect = 7e-19
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 27/118 (22%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
           PLH AA +G+ +  ++LL       ++        +G TPLHLAA+NG  +++KLL+ K 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNAR------SKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLH 334
            D +  R+    +  H+A K+G+  IV         + L       N      +   H
Sbjct: 66  AD-VNARSKDGNTPEHLAKKNGHHEIV---------KLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCN 258
            VK L   G +   ++        PLH AA +G+ ++ + LL       ++        +
Sbjct: 24  EVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR------SKD 74

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILH 298
           G TP HLA +NG  +++KLL  K  D +  R+       H
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 64/159 (40%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKA---YQTPLSIAIDARLNDIAC 173
             +GNTPLHNA  N H   ++ L+ K  D      +N       TPL +A          
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLA---------- 49

Query: 174 FIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLH 230
                   + N                   +  +VK+L   G +     +       P H
Sbjct: 50  --------AKN------------------GHAEIVKLLLAKGADVNARSKDGN---TPEH 80

Query: 231 YAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLH 264
            A  +G+ ++ + L        ++              H
Sbjct: 81  LAKKNGHHEIVKLLDAKGADVNAR------SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 21/77 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           ++    T LH+AA+ G      EI+K L A    VN                 +GNTP H
Sbjct: 38  RSKDGNTPLHLAAKNGHA----EIVKLLLAKGADVNA-------------RSKDGNTPEH 80

Query: 128 NAVTNQHKRVIRILVEK 144
            A  N H  ++++L  K
Sbjct: 81  LAKKNGHHEIVKLLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 28/94 (29%)

Query: 77  ETALHIAARIGDRAIVSEIMKYL----PAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
            T LH AA+ G    V    K L      VN                 +GNTPLH A  N
Sbjct: 10  NTPLHNAAKNGHAEEV----KKLLSKGADVNA-------------RSKDGNTPLHLAAKN 52

Query: 133 QHKRVIRILVEKDSVPSSYINKAY---QTPLSIA 163
            H  ++++L+ K     + +N       TP  +A
Sbjct: 53  GHAEIVKLLLAKG----ADVNARSKDGNTPEHLA 82

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 85.0 bits (211), Expect = 6e-19
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
           +   N    L  AA  G+L+V++  + +  D     N    + LH A    N++IV F  
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDF-- 72

Query: 314 RSPEMENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNT 367
                  LI      N  D +G TPLH AA    + +   L +H    I A   S    T
Sbjct: 73  -------LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDG-AT 123

Query: 368 ALEIAEITRANGKEIQKHL 386
           A E  +  R    +   +L
Sbjct: 124 AFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 84.6 bits (210), Expect = 9e-19
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 208 VKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY--KRDCNGETP 262
           ++ +     +     R   +    L  AA +G +++ Q+ ++E        + +  G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM---NDPSQPNEEGITA 57

Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN-- 320
           LH A       ++  LI    + +   ++   + LH AA   +  I   ++     ++  
Sbjct: 58  LHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALV-----QHGA 111

Query: 321 LINLVDRN-GNTPLHLAAMGL--HSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEI 371
            I     + G T           ++D   +     +S+ +             +    E+
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 26/200 (13%)

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE--- 246
           + L L+    +    ++ V+          + +      LH A    N  +   L+    
Sbjct: 20  NPLVLLLDAALTGELEV-VQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 247 --ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD-RSILHVAA-- 301
              S       D +G TPLH AA      +   L+      I     SD  +        
Sbjct: 79  NVNSP------DSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPY 131

Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH 361
           + G  +  +++      ++ + L++      L   +     ++ F     +SV +  ++ 
Sbjct: 132 REGYADCATYLAD--VEQS-MGLMNSGAVYALWDYSAEFGDELSFREG--ESVTVLRRDG 186

Query: 362 SARSNTALEIAEITRANGKE 381
                T    A     +G+E
Sbjct: 187 PEE--TDWWWA---ALHGQE 201

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 50/232 (21%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
            +     L +A       V++  V++ +      ++                      ++
Sbjct: 18  RLNPLVLLLDAALTGELEVVQQAVKEMN----DPSQP---------------------NE 52

Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAAS 235
                      + +T +H  +   NY I V  L   G N   ++  D H   PLH AA+ 
Sbjct: 53  -----------EGITALHNAICGANYSI-VDFLITAGAN---VNSPDSHGWTPLHCAASC 97

Query: 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAA--ENGKLKVLKLLINKYPDAIEIRNNSD 293
            +  +   L++    +      +G T          G       L +     + + N+  
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGA 156

Query: 294 RSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
              L   +                +   +   D    T    AA+      V
Sbjct: 157 VYALWDYSAEFG--DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 30/229 (13%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKR 136
              L  AA  G+  +V + +K +   +Q              + EG T LHNA+   +  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPSQ-------------PNEEGITALHNAICGANYS 68

Query: 137 VIRILVEKDSVPSSYINKAY---QTPLSIAIDARLN--DIACFIIDKSPESLNTTRLPDE 191
           ++  L+   +     +N       TPL  A  A  N   I   ++      +  T L D 
Sbjct: 69  IVDFLITAGA----NVNSPDSHGWTPLHCA--ASCNDTVICMALVQHGAA-IFATTLSDG 121

Query: 192 LTLIHF-VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
            T        R+ Y      L   ++ +  ++      L   +A    +++    E    
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESV 179

Query: 251 LAYKRDCNGETPLHLAAENGKLK-VLKLLINKYPDAIEIRNNSDRSILH 298
              +RD   ET    AA +G+   V +     +P  ++ + +  +   H
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR-VKPQRSKVKHHHH 227

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.6 bits (195), Expect = 4e-18
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           NG TPLHLAA NG L+V+KLL+    D +  ++ + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               +N  D+NG TPLHLAA   H +VV
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.5 bits (174), Expect = 3e-15
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 12/89 (13%)

Query: 226 RNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
           R PLH AA +G++++ + LLE      +K      D NG TPLHLAA NG L+V+KLL+ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
              D +  ++ + R+ LH+AA++G+  +V
Sbjct: 57  AGAD-VNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 17/83 (20%)

Query: 207 MVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCN 258
           +VK+L   G +   ++  D + R PLH AA +G++++ + LLE      +K      D N
Sbjct: 17  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKN 67

Query: 259 GETPLHLAAENGKLKVLKLLINK 281
           G TPLHLAA NG L+V+KLL+  
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 28/93 (30%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
           T LH+AAR G   +V    K L      VN               D  G TPLH A  N 
Sbjct: 4   TPLHLAARNGHLEVV----KLLLEAGADVNA-------------KDKNGRTPLHLAARNG 46

Query: 134 HKRVIRILVEKDSVPSSYINKA---YQTPLSIA 163
           H  V+++L+E      + +N      +TPL +A
Sbjct: 47  HLEVVKLLLEAG----ADVNAKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 21/77 (27%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K+    T LH+AAR G      E++K L      VN               D  G TPLH
Sbjct: 31  KDKNGRTPLHLAARNGHL----EVVKLLLEAGADVNA-------------KDKNGRTPLH 73

Query: 128 NAVTNQHKRVIRILVEK 144
            A  N H  V+++L+E 
Sbjct: 74  LAARNGHLEVVKLLLEA 90

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 85.4 bits (211), Expect = 4e-18
 Identities = 39/257 (15%), Positives = 70/257 (27%), Gaps = 19/257 (7%)

Query: 216 ELIDRLDWHQRNPLHYAAASGNVKMAQ--RLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
               +           AA +G         LL  S  +             LAAENG L 
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 274 VLKLLINKYPDA-IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTP 332
           VL  L    P   + +    +     +AA++G+ ++++ +      E     +       
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM-IQAENYYA 201

Query: 333 LHLAAMGL-HSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKAL 391
              AA+G  H +V+  L     V +              +      +   +++     A 
Sbjct: 202 FRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD--AF 258

Query: 392 KTAYAKRALSAEELQQKRQVSKEEGEKGK---EMAQTLSVMATLIATFTFTAAFTIPGGV 448
           K +                V+K E  +G          +    L       +   I    
Sbjct: 259 KLSNPDGVFDL--------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 310

Query: 449 KSDGPDEGTATLLHRAS 465
            +         LL  A 
Sbjct: 311 PTATIPGDANELLRLAL 327

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 37/320 (11%), Positives = 92/320 (28%), Gaps = 45/320 (14%)

Query: 66  YSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTP 125
           +S   +K +  E    +AA  G  + + + +  L   +++               E    
Sbjct: 82  WSDAHKKGIKSEVICFVAAITGCSSAL-DTLCLLLTSDEIVKV---------IQAENYQA 131

Query: 126 LHNAVTNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLN--DIACFIIDKSPES 182
              A  N H  V+  L E   +   + I         +A  A      +   + + +P  
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA--AENGHLHVLNRLCELAPTE 189

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                  +      +  + + +  ++  L     ++   + H           G   +  
Sbjct: 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-------EFEYGEKYVNP 242

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
            +      +   ++ +      L+  +G   ++                    +L    +
Sbjct: 243 FIAR---HVNRLKEMH--DAFKLSNPDGVFDLVTKSECL----------QGFYMLRNLIR 287

Query: 303 HGNWNI---VSFILRSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
             +  +   + F+L  P ++ L     +  + N  L LA    +      L    SV   
Sbjct: 288 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL 347

Query: 358 AKN---HSARSNTALEIAEI 374
            K    +   +   L++  +
Sbjct: 348 TKANNYYINETGGRLDLRAV 367

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 9/161 (5%)

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK--- 271
              +      ++          +     + L      A+K+    E    +AA  G    
Sbjct: 51  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS---DAHKKGIKSEVICFVAAITGCSSA 107

Query: 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNT 331
           L  L LL+      +++    +     +AA++G+ ++++ +      E +   +      
Sbjct: 108 LDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-IQAENYH 165

Query: 332 PLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
              LAA   H  V+  L              A +  A   A
Sbjct: 166 AFRLAAENGHLHVLNRLCELAP-TEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.8 bits (186), Expect = 6e-15
 Identities = 36/291 (12%), Positives = 72/291 (24%), Gaps = 54/291 (18%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
               +  A  +AA  G   +++ + +  P                M   E       A  
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-----------AMIQAENYHAFRLAAE 172

Query: 132 NQHKRVIRILVEKDSVPSS-YINKAYQTPLSIAIDARLN---DIACFIIDKSPESLNTTR 187
           N H  V+  L E     ++  I          A  A      ++  F++D          
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHNVINFLLDCPVML--AYA 228

Query: 188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
              E       V           +  +   +  +     +    +   G   +  +   E
Sbjct: 229 EIHEFEYGEKYV--------NPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTK--SE 274

Query: 248 SKRLAYKRDCNGETPLHLAAENGK---LKVLKLLIN----KYPDAIEIRNNSDRSILHVA 300
                      G   L           L  ++ L++    K              +L +A
Sbjct: 275 CL--------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

Query: 301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            + GN    + +L  P       ++        ++   G   D+      H
Sbjct: 327 LRLGNQGACALLLSIPS------VLALTKANNYYINETGGRLDLRAVALEH 371

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.0 bits (191), Expect = 5e-17
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 21/135 (15%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           +    L  AA  G+   +++L+    D +  ++    + L++A  HG+  IV        
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIV-------- 63

Query: 318 MENLI------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
            E L+      N VD  G TPLHLAA   H ++   L +H   ++ A++   +  TA +I
Sbjct: 64  -EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGK--TAFDI 119

Query: 372 AEITRANGKEIQKHL 386
           +       +++ + L
Sbjct: 120 S--IGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 18/121 (14%)

Query: 201 RQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-----ESKRLA 252
           R   D  V+IL   G +   ++  D +   PL+ A A G++++ + LL+      +    
Sbjct: 23  RAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--- 76

Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
              D  G TPLHLAA  G L++ ++L+    D +  ++   ++   ++  +GN ++   +
Sbjct: 77  ---DAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEIL 132

Query: 313 L 313
            
Sbjct: 133 Q 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.6 bits (151), Expect = 9e-12
 Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 66/172 (38%)

Query: 122 GNTPLHNAVTNQHKRVIRILV-------EKDSVPSSYINKAYQTPLSIAIDARLN--DIA 172
               L  A        +RIL+        KD        +   TPL +A        +I 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKD--------EYGLTPLYLA--TAHGHLEIV 63

Query: 173 CFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
             ++                                   G +   ++ +D     PLH A
Sbjct: 64  EVLLKN---------------------------------GAD---VNAVDAIGFTPLHLA 87

Query: 233 AASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
           A  G++++A+ LL+      ++      D  G+T   ++  NG   + ++L 
Sbjct: 88  AFIGHLEIAEVLLKHGADVNAQ------DKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
            + +  T LH+AA IG      EI + L      VN               D  G T   
Sbjct: 76  VDAIGFTPLHLAAFIGHL----EIAEVLLKHGADVNA-------------QDKFGKTAFD 118

Query: 128 NAVTNQHKRVIRILVEKD 145
            ++ N ++ +  IL + +
Sbjct: 119 ISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 72/180 (40%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
             L  AAR G      + ++ L A    VN               D  G TPL+ A  + 
Sbjct: 16  KKLLEAARAGQD----DEVRILMANGADVNA-------------KDEYGLTPLYLATAHG 58

Query: 134 HKRVIRILV-------EKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
           H  ++ +L+         D            TPL +A      +IA  ++          
Sbjct: 59  HLEIVEVLLKNGADVNAVD--------AIGFTPLHLAAFIGHLEIAEVLLKH-------- 102

Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                                    G +   ++  D   +     +  +GN  +A+ L +
Sbjct: 103 -------------------------GAD---VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 36/103 (34%)

Query: 72  KNLMDETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLH 127
           K+    T L++A   G      EI++ L      VN               D  G TPLH
Sbjct: 43  KDEYGLTPLYLATAHGHL----EIVEVLLKNGADVNA-------------VDAIGFTPLH 85

Query: 128 NAVTNQHKRVIRILV-------EKDSVPSSYINKAYQTPLSIA 163
            A    H  +  +L+        +D        K  +T   I+
Sbjct: 86  LAAFIGHLEIAEVLLKHGADVNAQD--------KFGKTAFDIS 120

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 228 PLHYAAASGNVKMAQRLLE-----ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
            L  AA +G     + L+       +K      D NG TPLHLAA NG L+V+KLL+   
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
            D +  ++   ++   ++  +GN ++   +
Sbjct: 81  AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
            ++  +   +  L+      ++    +    L  AA  G+   +++L+    D +  ++ 
Sbjct: 1   GSSHHHHHHSSGLVPRG---SHM-GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDK 55

Query: 292 SDRSILHVAAKHGNWNIVSFILRSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTL 348
           +  + LH+AA++G+  +V  +L     E    +   D+ G T   ++    + D+   L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLL-----EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 49/154 (31%)

Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN--DIACFIIDKSPESLNTT 186
             ++ H      LV + S    ++       L  A  AR    D    ++          
Sbjct: 1   GSSHHHHHHSSGLVPRGS----HMGSDLGKKLLEA--ARAGQDDEVRILMAN-------- 46

Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                                    G +   +   D +   PLH AA +G++++ + LLE
Sbjct: 47  -------------------------GAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 247 ESKRLA--YKRDCNGETPLHLAAENGKLKVLKLL 278
                A    +D  G+T   ++ +NG   + ++L
Sbjct: 79  AG---ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 24/105 (22%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVT 131
               L  AAR G    V    + L A    V                D  G+TPLH A  
Sbjct: 24  LGKKLLEAARAGQDDEV----RILMANGADVAA-------------KDKNGSTPLHLAAR 66

Query: 132 NQHKRVIRILVEKD-SVPSSYINKAYQTPLSIAIDARLNDIACFI 175
           N H  V+++L+E    V +   +K  +T   I+ID    D+A  +
Sbjct: 67  NGHLEVVKLLLEAGADVXAQ--DKFGKTAFDISIDNGNEDLAEIL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 74/432 (17%), Positives = 129/432 (29%), Gaps = 125/432 (28%)

Query: 156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTR-------LPDELT----LI--------- 195
           Y+  LS+  DA +++  C  +   P+S+ +           D ++    L          
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 196 ---HFV--VMRQNYD-IMVKILGTNKE--LIDRLDWHQRNPLHYAA---ASGNVKMAQRL 244
               FV  V+R NY  +M  I    ++  ++ R+   QR+ L+      A  NV   Q  
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 245 LEESKRLAYKRDCNGETPLH---------LAAENGKLKVLK--LLINKYPDAI---EIRN 290
           L+  + L   R       +          +A +     V     +  K    I    ++N
Sbjct: 138 LKLRQALLELRPAKNVL-IDGVLGSGKTWVALD-----VCLSYKVQCKMDFKIFWLNLKN 191

Query: 291 -NSDRSIL-------------HVAAKHGNWNI----------VSFILRSPEMEN-LINLV 325
            NS  ++L               +    + NI          +  +L+S   EN L+ L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL- 250

Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKH 385
             N        A  L   ++ T +R K V              L  A  T  +       
Sbjct: 251 -LNVQNAKAWNAFNLSCKILLT-TRFKQV-----------TDFLSAATTTHISLDHHSMT 297

Query: 386 LTLKALKTAYAKRA-LSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIATFTFTAAF-- 442
           LT   +K+   K      ++L         E          LS++A  I     T     
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDL-------PREVLTTNPRR--LSIIAESIRDGLATWDNWK 348

Query: 443 ---------TIPGGVKSDGPDEGTATLLHRASFQAFVI--TDTIAMTSAMAAAAIIFWSF 491
                     I   +    P E      +R  F    +        T  ++    + W  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAE------YRKMFDRLSVFPPSAHIPTILLS----LIW-- 396

Query: 492 WRSKTESLMDTL 503
           +      +M  +
Sbjct: 397 FDVIKSDVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 62/468 (13%), Positives = 128/468 (27%), Gaps = 160/468 (34%)

Query: 8   VLRHGDEYKIKQLALRQDIFSTSSPGGNAVLH-MA------------------------- 41
           V R     K++Q AL +       P  N ++  +                          
Sbjct: 131 VSRLQPYLKLRQ-ALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 42  --VRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD-RAIVSEIMKY 98
             +  +N      +L        +L Y +        + + +I  RI   +A +  ++K 
Sbjct: 185 FWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 99  LPAVN------QVGPAPVLESLFRMTDIE-------GNTPLHNAVTNQHKRVIRI----- 140
            P  N       V  A    + F   ++            + + ++      I +     
Sbjct: 241 KPYENCLLVLLNVQNAKAWNA-F---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 141 -LVEKDSVP--SSYINKAYQT---------PLSIA-IDARLNDIACF------------- 174
            L   +       Y++   Q          P  ++ I   + D                 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 175 -IIDKSPESLNTTRLPDEL--TLIHFVVMRQNYDIMVKILGT------------------ 213
            II+ S   L     P E         V   +  I   +L                    
Sbjct: 357 TIIESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 214 NKELIDRLDWHQRNPLHY----------AAASGNVKMAQRLLEESKRLAYKRDCNGETPL 263
              L+++    Q                        + + +++    +    D +   P 
Sbjct: 413 KYSLVEK----QPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPP 467

Query: 264 ------------HL-AAENGKLKVLKLLINKYPDA--IE--IRN-----NSDRSILHVAA 301
                       HL   E+ +   + L    + D   +E  IR+     N+  SIL+   
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 302 KHGNWNIVSFILRS-PEMENLIN-LVD--RNGNTPLHLAAMGLHSDVV 345
           +   +    +I  + P+ E L+N ++D        L  +    ++D++
Sbjct: 526 QLKFYK--PYICDNDPKYERLVNAILDFLPKIEENLICSK---YTDLL 568

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 12/130 (9%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCN-----GETPLHLAAENGK---LKVLKLL 278
             L  A  + ++          +               E  LHLA +      L ++  +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           I      ++ +     + LH AA +   + +  +L+      L+  V+  G T L +A  
Sbjct: 213 IQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARK 268

Query: 339 GLHSDVVFTL 348
             H +    L
Sbjct: 269 KHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 224 HQRNPLHYAAASGNVK---MAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            +   LH A    N     +   +++    L   +  +G T LH AA   +   LKLL+ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLL- 246

Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
           K    +   N +  + L +A K  +      +L   + 
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEE-LLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 23/108 (21%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL------FRMTDIEGNTPLHNA 129
           +E  LH+A ++ ++                   P+++ +            +GNT LH A
Sbjct: 190 EELVLHLAVKVANQ----------------ASLPLVDFIIQNGGHLDAKAADGNTALHYA 233

Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
                   +++L+ K       +N+A +T L IA      +    +  
Sbjct: 234 ALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 190 DELTLIHFVVMRQNYD--IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
            E  ++H  V   N     +V  +  N   +D         LHYAA        + LL +
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-K 247

Query: 248 SKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
            + L    +  GET L +A +    +  +LL  
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 19/136 (13%)

Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK----YPDAIEIRNNSDRSILHVAAK 302
              R A +     +           L VL+   N      P         +  +LH+A K
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199

Query: 303 HGNWNIVSFILRSPEMENL------INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
             N   +      P ++ +      ++    +GNT LH AA+    D +  L + ++  +
Sbjct: 200 VANQASL------PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA-LV 252

Query: 357 RAKNHSARSNTALEIA 372
              N +    TAL+IA
Sbjct: 253 GTVNEA--GETALDIA 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 7/152 (4%)

Query: 139 RILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198
           R    K    ++    +    +       L       +D + +         + T +H  
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176

Query: 199 VMR--QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD 256
           V    +    +V  L  N   +D+        LHY   + N +  + LL   K      +
Sbjct: 177 VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIAN 235

Query: 257 CNGETPLHLAAENGKLKVLKLLI----NKYPD 284
            +GETPL +A         +LL      ++  
Sbjct: 236 ESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 76  DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
           DETALH+A R  DR  +  +   +     +               +G+T LH      + 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNL----------DKQTGKGSTALHYCCLTDNA 218

Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII 176
             +++L+ +        N++ +TPL IA   +       + 
Sbjct: 219 ECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
            +  D + LH+A +  +   +  +    +    ++     G+T LH   +  +++ +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTL 388
            R K+ +I   N S    T L+IA   R   +  ++ LT 
Sbjct: 225 LRGKA-SIEIANES--GETPLDIA--KRLKHEHCEELLTQ 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 226 RNPLHYAAA---SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
              LH A       ++ +   +++    L   +  +G T LH AA   +   LKLL+   
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNTALHYAALYNQPDCLKLLLKGR 230

Query: 283 PDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
              +   N +  + L +A K  +      +
Sbjct: 231 AL-VGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 27  FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARI 86
           F+         L  A+  R+   + E           L     +      E  LH+A ++
Sbjct: 125 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPE---ELVLHLAVKV 181

Query: 87  GDR---AIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
            ++    +V  I++    ++                 +GNT LH A        +++L+ 
Sbjct: 182 ANQASLPLVDFIIQNGGHLD-------------AKAADGNTALHYAALYNQPDCLKLLL- 227

Query: 144 KDSVPSSYINKAYQTPLSIAIDARLNDI 171
           K       +N+A +T L IA      + 
Sbjct: 228 KGRALVGTVNEAGETALDIARKKHHKEC 255

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
             N  +  + L  N   +++ D   R PLH+A   G+  +A   L +       RD  G 
Sbjct: 244 AANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGR 302

Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
            PL +A E     ++ LL        E     
Sbjct: 303 DPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 30/150 (20%), Positives = 45/150 (30%), Gaps = 38/150 (25%)

Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
                 PL  A A+ ++   + LL+    +  + D  G  PLH A   G   +  L +  
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFL-- 288

Query: 282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH 341
                               K G                 +   D  G  PL +A    +
Sbjct: 289 --------------------KRGAD---------------LGARDSEGRDPLTIAMETAN 313

Query: 342 SDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
           +D+V  L   K     A    A   T L+I
Sbjct: 314 ADIVTLLRLAKMREAEAAQGQAGDETYLDI 343

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 7/168 (4%)

Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
           + K+         R     + P+    +      + R   E           G      +
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207

Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSD-RSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
                L  +   +    D   +    D  + L  A    +     F+L++      +N  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQA 264

Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373
           D  G  PLH A +  H+ +     +  + ++ A++        L IA 
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGA-DLGARDSE--GRDPLTIAM 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	580
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-56  Score=459.36  Aligned_cols=356  Identities=26%  Similarity=0.344  Sum_probs=315.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.|+..|+.+++++|++.+...+..+..|.||||+|+..|+.+++++|+++|++         ++.++..|.||||+
T Consensus        16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~   86 (437)
T 1n11_A           16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------VNAKAKDDQTPLHC   86 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------SSCCCTTSCCHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------CCCCCCCCCCHHHH
Confidence            589999999999999999999877777889999999999999999999999999998         88999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..|+.+++++|+++|++++             ..+..|.||||+|+..|+.+++++|++++++.. ..+..|.||||+
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~  152 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHV  152 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTT-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHH
Confidence            999999999999999998876             467889999999999999999999999988765 467788999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHH
Q 045393          163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ  242 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  242 (580)
                      |+..|+.+++++|++++. +++..+. .|.||||.|+..++.++++.|++.+.. ++..+..|.||||+|+..|+.++++
T Consensus       153 A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          153 AAKYGKVRVAELLLERDA-HPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTC-CTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999874 4444554 788999999999999999999988776 7778888999999999999999999


Q ss_pred             HHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhc
Q 045393          243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI  322 (580)
Q Consensus       243 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~  322 (580)
                      +|++.|++. +..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++   +.++
T Consensus       230 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~  304 (437)
T 1n11_A          230 SLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMV  304 (437)
T ss_dssp             HHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCT
T ss_pred             HHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccC
Confidence            999998876 66788899999999999999999999999888 788889999999999999999999999987   4458


Q ss_pred             ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       323 n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      +.+|..|+||||+|+..|+.+++++|+++ |+|+|.+|.  .|+|||++|..       ....+++++|+++|++..
T Consensus       305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~--~g~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTK--LGYSPLHQAAQ-------QGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCC--CCCCHHHHHHH-------CChHHHHHHHHHCcCCCC
Confidence            88999999999999999999999999875 889999998  89999999987       456788899999888754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.9e-55  Score=451.60  Aligned_cols=352  Identities=25%  Similarity=0.319  Sum_probs=325.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.|++.|+.+++++|++.+...+..+.+|.||||+|+..|+.+++++|+++|++         ++..+..|.||||+
T Consensus        49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t~L~~  119 (437)
T 1n11_A           49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---------PNLATTAGHTPLHI  119 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC---------CCCCCCCCCcHHHH
Confidence            689999999999999999999987777899999999999999999999999999998         88899999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..|+.+++++|++++++.+             ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||.
T Consensus       120 A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~  185 (437)
T 1n11_A          120 AAREGHVETVLALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHV  185 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCc-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHH
Confidence            999999999999999988754             467889999999999999999999999999887 578899999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHH
Q 045393          163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ  242 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  242 (580)
                      |+..++.+++++|++++.. +...+. .|.||||.|+..++.++++.|++.+.. ++..+..|.||||+|+..|+.++++
T Consensus       186 A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~  262 (437)
T 1n11_A          186 AVHHNNLDIVKLLLPRGGS-PHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVA  262 (437)
T ss_dssp             HHHTTCHHHHHHHGGGTCC-SCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCC-CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999854 444444 899999999999999999999998876 8888999999999999999999999


Q ss_pred             HHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhc
Q 045393          243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI  322 (580)
Q Consensus       243 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~  322 (580)
                      +|++++++. +..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|+++   ++++
T Consensus       263 ~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~  337 (437)
T 1n11_A          263 LLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADV  337 (437)
T ss_dssp             HHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCT
T ss_pred             HHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCC
Confidence            999999887 77899999999999999999999999999999 899999999999999999999999999999   4559


Q ss_pred             ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhh
Q 045393          323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAY  395 (580)
Q Consensus       323 n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~g  395 (580)
                      |.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  +|+||+++|..       .+...+.++|....
T Consensus       338 n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~g~~~~~~~l~~~~  400 (437)
T 1n11_A          338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSS--DGTTPLAIAKR-------LGYISVTDVLKVVT  400 (437)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCS--SSCCHHHHHHH-------TTCHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCC--CCCCHHHHHHH-------cCcHHHHHHHHhcc
Confidence            99999999999999999999999999975 999999999  99999999988       34456666666543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.4e-44  Score=357.84  Aligned_cols=295  Identities=16%  Similarity=0.150  Sum_probs=259.9

Q ss_pred             CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccC-CCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           31 SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNL-MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        31 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      +.+|+|+||.|++.|+.++|++||++|++         ++.++. .|+||||+|+..|+.++|++|+++|++++      
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad---------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~------   86 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN---------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV------   86 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC---------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC---------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh------
Confidence            34578999999999999999999999998         777765 59999999999999999999999999876      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcC-----
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLN-----  184 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~-----  184 (580)
                             .++..+.+|++.++..+..+++..+++.+.+.+ ..+..|.||+++|+..|+.++++++++++.....     
T Consensus        87 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~  158 (337)
T 4g8k_A           87 -------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK  158 (337)
T ss_dssp             -------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred             -------hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccc
Confidence                   478899999999999999999999999999887 5789999999999999999999999998853211     


Q ss_pred             ----CCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC----hHHHHHHHHhchhcccccC
Q 045393          185 ----TTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN----VKMAQRLLEESKRLAYKRD  256 (580)
Q Consensus       185 ----~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~  256 (580)
                          ..+. .|.||||.|+..|+.++++.|+++.+.+++..|..|.|+++.++..++    .+++++|+++|+++ +.++
T Consensus       159 ~~~~~~~~-~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d  236 (337)
T 4g8k_A          159 EDQERLRK-GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRG  236 (337)
T ss_dssp             -----CTT-CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCC
T ss_pred             cccccccC-CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcC
Confidence                1222 689999999999999999999988767799999999999998887654    46889999999988 7789


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHH
Q 045393          257 CNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHL  335 (580)
Q Consensus       257 ~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~  335 (580)
                      ..|.||||+|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.+++++|+++|+   ++|     +.||||+
T Consensus       237 ~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA---d~n-----~~~~L~~  307 (337)
T 4g8k_A          237 ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGA---STD-----CGDLVMT  307 (337)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC---SST-----TCCHHHH
T ss_pred             CCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCC-----CCCHHHH
Confidence            9999999999999999999999986 455 89999999999999999999999999999954   355     4569999


Q ss_pred             HHhcCChhHHHHhhcCccccccccc
Q 045393          336 AAMGLHSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       336 A~~~~~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      |+.+|+.+++++|+++ |+|+|...
T Consensus       308 A~~~~~~~iv~~Ll~~-GA~~d~~~  331 (337)
T 4g8k_A          308 ARRNYDHSLVKVLLSH-GAKEDFHP  331 (337)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCC----
T ss_pred             HHHcCCHHHHHHHHHC-cCCCCCCC
Confidence            9999999999999976 99998743

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-43  Score=355.71  Aligned_cols=302  Identities=21%  Similarity=0.256  Sum_probs=208.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhh-cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      ++|+.|++.|+.+.+++++.. +...+..+..|.||||+|+..|+.+++++|+++|++         ++.+|..|.||||
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~   96 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---------VHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCcHHH
Confidence            467777777777777777765 344445666777777777777777777777777776         6667777777777


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      +|+..|+.+++++|+++|++++             ..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.+|++
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~  162 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVD  162 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchH
Confidence            7777777777777777776654             356677777777777777777777777777665 45667777777


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc---CCh
Q 045393          162 IAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS---GNV  238 (580)
Q Consensus       162 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~---g~~  238 (580)
                      .|+..+..+.+++...              ..++..++..++.+.+..++..... ....+..|.||||+|+..   ++.
T Consensus       163 ~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          163 MAPTPELRERLTYEFK--------------GHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             HCSSHHHHHHHHHHHH--------------HHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             HHhhhhhHHHHHhhhc--------------ccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHH
Confidence            7766666666555432              2345666667777777777666544 334556677777777777   446


Q ss_pred             HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393          239 KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM  318 (580)
Q Consensus       239 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  318 (580)
                      +++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|  
T Consensus       228 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--  303 (351)
T 3utm_A          228 QVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYG--  303 (351)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--
T ss_pred             HHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC--
Confidence            7777777777666 55666777777777777777777777777777 6777777777777777777777777777763  


Q ss_pred             hhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       319 ~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                       ++++.+|..|.||+|+|    +.+++++|.+.
T Consensus       304 -ad~~~~~~~g~tal~~a----~~~~~~~l~~~  331 (351)
T 3utm_A          304 -SDPSIISLQGFTAAQMG----NEAVQQILSES  331 (351)
T ss_dssp             -CCTTCCCTTSCCHHHHS----CHHHHHHHHHC
T ss_pred             -CCCCCcCCCCCChhhhh----hHHHHHHHHhc
Confidence             34677777777777776    44556666544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-43  Score=357.08  Aligned_cols=312  Identities=19%  Similarity=0.204  Sum_probs=274.2

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      .+..+.++||.|+..|+.+.++.|+.....        .++.+|..|.||||+|+..|+.+++++|+++|++++      
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------   85 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNV--------NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH------   85 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTT--------TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCC--------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence            455688999999999999999999987443        488899999999999999999999999999998876      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP  189 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  189 (580)
                             .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+. 
T Consensus        86 -------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-  155 (351)
T 3utm_A           86 -------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGA-DPTLVNC-  155 (351)
T ss_dssp             -------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-
T ss_pred             -------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCccccC-
Confidence                   478899999999999999999999999999887 578899999999999999999999999985 4445555 


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .|.+|++.++..+..+.+......             +++..++..++.+.++.++..+... ...+..|.||||+|+..
T Consensus       156 ~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~  221 (351)
T 3utm_A          156 HGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVAS  221 (351)
T ss_dssp             TSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHC
T ss_pred             CCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHH
Confidence            899999999988777776665432             5788899999999999999887654 55678899999999999


Q ss_pred             ---CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          270 ---GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       270 ---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                         ++.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++   .++|.+|..|+||||+|+..|+.++++
T Consensus       222 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g~t~L~~A~~~~~~~~v~  297 (351)
T 3utm_A          222 LHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQTCR  297 (351)
T ss_dssp             CSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             hCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence               668999999999999 8999999999999999999999999999984   559999999999999999999999999


Q ss_pred             HhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393          347 TLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK  397 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  397 (580)
                      +|+++ |+|++.+|.  .|+||+++|..           .+.++|.+.+..
T Consensus       298 ~Ll~~-gad~~~~~~--~g~tal~~a~~-----------~~~~~l~~~~~~  334 (351)
T 3utm_A          298 LLLSY-GSDPSIISL--QGFTAAQMGNE-----------AVQQILSESTPM  334 (351)
T ss_dssp             HHHHT-TCCTTCCCT--TSCCHHHHSCH-----------HHHHHHHHC---
T ss_pred             HHHHc-CCCCCCcCC--CCCChhhhhhH-----------HHHHHHHhcccc
Confidence            99976 999999999  99999999855           556666665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.4e-42  Score=344.18  Aligned_cols=285  Identities=18%  Similarity=0.220  Sum_probs=252.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCC-CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSP-GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      ++|+.|++.||+++|++|++.|...+..+. .|+||||+|+..|+.++|++|+++|++         ++.++..+.+|++
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---------~~~~~~~~~~~~~   97 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---------hhhhccCCCchhH
Confidence            579999999999999999999976665554 599999999999999999999999998         8889999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc---------cc
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS---------YI  152 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~---------~~  152 (580)
                      .++..++.+++..+++.+.+++             ..|..|.||||+|+..|+.+++++|+++|++++.         ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~-------------~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~  164 (337)
T 4g8k_A           98 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL  164 (337)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----C
T ss_pred             HHHhcccchhhHHhhhccchhh-------------hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccc
Confidence            9999999999999999998865             5789999999999999999999999999987653         23


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCC----HHHHHHHHhhCCccccccCCCCChH
Q 045393          153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN----YDIMVKILGTNKELIDRLDWHQRNP  228 (580)
Q Consensus       153 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~d~~g~t~  228 (580)
                      +..|.||||+|+..|+.+++++|+++...+++..+. .|.++++.++..++    ..+++.|++.+.+ ++.+|..|+||
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~  242 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTP  242 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCH
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCH
Confidence            557899999999999999999999875566777776 89999998876554    3466777777665 89999999999


Q ss_pred             HHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393          229 LHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN  307 (580)
Q Consensus       229 L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  307 (580)
                      ||+|+..|+.++++.|++. +.++ +.+|..|.||||+|++.|+.+++++|+++|++ ++     +.+|||+|+++|+.+
T Consensus       243 L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n-----~~~~L~~A~~~~~~~  315 (337)
T 4g8k_A          243 LILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TD-----CGDLVMTARRNYDHS  315 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-ST-----TCCHHHHHHHTTCHH
T ss_pred             HHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-----CCCHHHHHHHcCCHH
Confidence            9999999999999999986 4555 78899999999999999999999999999998 44     457999999999999


Q ss_pred             HHHHHhcCcch
Q 045393          308 IVSFILRSPEM  318 (580)
Q Consensus       308 iv~~Ll~~~~~  318 (580)
                      ++++|+++|++
T Consensus       316 iv~~Ll~~GA~  326 (337)
T 4g8k_A          316 LVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHCcCC
Confidence            99999999654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-42  Score=338.66  Aligned_cols=275  Identities=20%  Similarity=0.201  Sum_probs=238.6

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccc-cCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393           33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQK-NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL  111 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (580)
                      +|+||||.|+..|+.+++++|+++|++         ++.. +..|.||||+|+..|+.+++++|+++|++++        
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------   66 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN---------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------   66 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC---------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--------
Confidence            478999999999999999999999988         5555 7889999999999999999999999998865        


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                           .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++... +.... . 
T Consensus        67 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~-  137 (285)
T 1wdy_A           67 -----LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRK-T-  137 (285)
T ss_dssp             -----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCC-C-
T ss_pred             -----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccc-c-
Confidence                 478899999999999999999999999999876 57888999999999999999999999988532 22211 0 


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHHcC
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENG  270 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g  270 (580)
                                             .......+..|.||||.|+..|+.+++++|++. +.++ +..+..|.||||.|+..+
T Consensus       138 -----------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          138 -----------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSS  193 (285)
T ss_dssp             -----------------------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCS
T ss_pred             -----------------------HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcc
Confidence                                   011334467889999999999999999999988 7666 777889999999999999


Q ss_pred             c----HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          271 K----LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       271 ~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                      +    .+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++..  +.+++.+|..|+||||+|+..++.++++
T Consensus       194 ~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence            9    9999999999999 8899999999999999999999999999831  4458999999999999999999999999


Q ss_pred             HhhcCcccccccccc
Q 045393          347 TLSRHKSVNIRAKNH  361 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~  361 (580)
                      +|+++ |++++.+|.
T Consensus       271 ~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          271 LLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHH-SSCSCCSSC
T ss_pred             HHHHc-CCCCCcccc
Confidence            99975 999998874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-40  Score=320.80  Aligned_cols=271  Identities=18%  Similarity=0.201  Sum_probs=227.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCccccc-CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTS-SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      ++|+.|++.|+.+++++|++.+...+.. +..|.||||+|+..|+.+++++|+++|.+         ++.+|..|.||||
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~   77 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCCCHHH
Confidence            6899999999999999999998555544 78899999999999999999999999998         8889999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      +|+..|+.+++++|+++|++++             ..|..|.||||+|+..|+.+++++|+++|+++.... ...  .  
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~--~--  139 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-KTK--E--  139 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-CCC--H--
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccccc-ccH--H--
Confidence            9999999999999999998865             478899999999999999999999999998876321 110  0  


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC----
Q 045393          162 IAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN----  237 (580)
Q Consensus       162 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~----  237 (580)
                                          .....+. .|.||||.|+..|+.+++++|++..+..++..|..|.||||+|+..++    
T Consensus       140 --------------------~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          140 --------------------DQERLRK-GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  198 (285)
T ss_dssp             --------------------HHHHTTC-CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred             --------------------HHHhhcc-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence                                0000111 677777777777777777777777455577888888899999988888    


Q ss_pred             hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHH-hCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393          238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN-KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP  316 (580)
Q Consensus       238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  316 (580)
                      .+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+++|+.+++++|+++|
T Consensus       199 ~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          199 EAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            88999999998887 6778889999999999999999999998 6666 8888999999999999999999999999884


Q ss_pred             chhhhccccc
Q 045393          317 EMENLINLVD  326 (580)
Q Consensus       317 ~~~~~~n~~d  326 (580)
                      .   +++.+|
T Consensus       277 a---~~~~~d  283 (285)
T 1wdy_A          277 A---STDCGD  283 (285)
T ss_dssp             S---CSCCSS
T ss_pred             C---CCCccc
Confidence            4   477666

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-41  Score=342.30  Aligned_cols=310  Identities=19%  Similarity=0.261  Sum_probs=223.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      .++|+.++..|+.+.++.+++......    ...+++.-+...|+.+++++++.              ..++..|.||||
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~g~t~L~   99 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIP--------------TEPEPESPIKLH   99 (373)
T ss_dssp             --------------------------------------------------------------------------CCCHHH
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccccccccccc--------------cCCCCCCccHHH
Confidence            456777888888888888877542211    12345666777888888887754              345788999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccC-CCCCcHHHHHHHcCcHHHHHHHH--------HcCCCCCccc
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD-IEGNTPLHNAVTNQHKRVIRILV--------EKDSVPSSYI  152 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d-~~g~tpL~~A~~~~~~~~v~~Ll--------~~~~~~~~~~  152 (580)
                      .|+..++ ++++.|+..  ++             +..| ..|.||||+|+..|+.+++++|+        +.|++++ ..
T Consensus       100 ~Aa~~~~-~~~~~L~~~--~~-------------n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~  162 (373)
T 2fo1_E          100 TEAAGSY-AITEPITRE--SV-------------NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM  162 (373)
T ss_dssp             HHHHSSS-CCCSCCSTT--TT-------------TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred             HHhcCCc-hHHHHhccc--cc-------------cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence            9999554 777777542  22             2455 78999999999999988877776        7898887 57


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC--ccccccCCCCChHHH
Q 045393          153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK--ELIDRLDWHQRNPLH  230 (580)
Q Consensus       153 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~d~~g~t~L~  230 (580)
                      |..|.||||+|+..|+.+++++|++++. +++..+. .|.||||.|+..|+.++++.|++.+.  ..++..|..|.||||
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCC-CCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            8999999999999999999999999985 4455555 89999999999999999999998763  457888999999999


Q ss_pred             HHHHcC---ChHHHHHHHHhchhccc-------ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          231 YAAASG---NVKMAQRLLEESKRLAY-------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       231 ~A~~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      +|+..+   +.+++++|++.|+++..       ..+..|.||||+|+..|+.+++++|++++...++.+|..|+||||+|
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A  320 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  320 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHH
Confidence            999998   89999999999988732       25678999999999999999999999998444999999999999999


Q ss_pred             HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      +.+|+.+++++|+++   +++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus       321 ~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          321 AQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999998   455999999999999999999999999999975

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=322.71  Aligned_cols=269  Identities=20%  Similarity=0.213  Sum_probs=188.5

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhH--HhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIA--LRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP  107 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  107 (580)
                      .+..|.|+||+|+..|+.+.+..++..++...  ...-...++.+|..|+||||+|+..|+.+++++|++.|++++    
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----   86 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN----   86 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC----
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC----
Confidence            45679999999999999888888777654300  000012356788999999999999999999999999998865    


Q ss_pred             cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCC
Q 045393          108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR  187 (580)
Q Consensus       108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  187 (580)
                               .+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++... +   
T Consensus        87 ---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~---  152 (285)
T 3d9h_A           87 ---------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q---  152 (285)
T ss_dssp             ---------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S---
T ss_pred             ---------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C---
Confidence                     478899999999999999999999999998876 56788888888888888888888888876421 1   


Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH
Q 045393          188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA  267 (580)
Q Consensus       188 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  267 (580)
                                                      . +..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus       153 --------------------------------~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~  198 (285)
T 3d9h_A          153 --------------------------------P-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLAC  198 (285)
T ss_dssp             --------------------------------C-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHH
T ss_pred             --------------------------------C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence                                            1 123678888888888888888888888776 667788888888888


Q ss_pred             HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393          268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (580)
Q Consensus       268 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  347 (580)
                      ..|+.+++++|++++++ ++ .|..|+||||+|+..++.+++++|+++   +++++.+|.+|+||||+|+  ++.++++.
T Consensus       199 ~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~--~~~~~~~~  271 (285)
T 3d9h_A          199 ENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDF---GADTQAKNAEGKRPVELVP--PESPLAQL  271 (285)
T ss_dssp             HTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSC--TTSHHHHH
T ss_pred             HcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHhc--CccHHHHH
Confidence            88888888888888888 55 378888888888888888888888887   4458888888888888888  45688888


Q ss_pred             hhcCcccccc
Q 045393          348 LSRHKSVNIR  357 (580)
Q Consensus       348 Ll~~~~~d~~  357 (580)
                      |+++.|+++.
T Consensus       272 Ll~~~~a~l~  281 (285)
T 3d9h_A          272 FLEREGASLP  281 (285)
T ss_dssp             HHHHC-----
T ss_pred             HHHhhccCCC
Confidence            8877676654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-40  Score=333.99  Aligned_cols=277  Identities=21%  Similarity=0.287  Sum_probs=226.0

Q ss_pred             HHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhccccc-CCCCcHHHHHH
Q 045393            6 LEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKN-LMDETALHIAA   84 (580)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~tpLh~Aa   84 (580)
                      ..+...|+.+.++.++..     ..+..|.||||+|+..|+ +++++|++.  +         ++.+| ..|+||||+|+
T Consensus        71 ~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~---------~n~~d~~~g~t~Lh~Aa  133 (373)
T 2fo1_E           71 NGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPITRE--S---------VNIIDPRHNRTVLHWIA  133 (373)
T ss_dssp             ----------------------------CCCHHHHHHHSSS-CCCSCCSTT--T---------TTTCCCSSCCCHHHHHH
T ss_pred             CCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhccc--c---------ccccCCcCCCCHHHHHH
Confidence            345556788888777654     467889999999999654 888888653  3         56677 78999999999


Q ss_pred             HhCCHHHHHHHH--------hcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCC
Q 045393           85 RIGDRAIVSEIM--------KYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY  156 (580)
Q Consensus        85 ~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  156 (580)
                      ..|+.+++++|+        +.|++++             .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus       134 ~~g~~~~v~~Ll~~~~~~ll~~ga~vn-------------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g  199 (373)
T 2fo1_E          134 SNSSAEKSEDLIVHEAKECIAAGADVN-------------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSE  199 (373)
T ss_dssp             CTTCCSCCTTHHHHHHHHHHHTCCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTC
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCCCCc-------------CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCC
Confidence            999998888776        7787765             578899999999999999999999999999887 578899


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcCC--CCcCCCCCCCCccHHHHHHHcC---CHHHHHHHHhhCCccccc--------cCC
Q 045393          157 QTPLSIAIDARLNDIACFIIDKSP--ESLNTTRLPDELTLIHFVVMRQ---NYDIMVKILGTNKELIDR--------LDW  223 (580)
Q Consensus       157 ~tpL~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~--------~d~  223 (580)
                      .||||+|+..|+.+++++|++++.  .+.+..+. .|.||||.|+..+   +.++++.|++.+.. ++.        .|.
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKY  277 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccc
Confidence            999999999999999999999763  34455555 8999999999998   89999999999866 443        577


Q ss_pred             CCChHHHHHHHcCChHHHHHHHHhc-hhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          224 HQRNPLHYAAASGNVKMAQRLLEES-KRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       224 ~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      .|.||||+|+..|+.+++++|++.+ +++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQA  355 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHH
Confidence            8999999999999999999999987 555 88899999999999999999999999999999 89999999999999999


Q ss_pred             cCCHHHHHHHhcCcc
Q 045393          303 HGNWNIVSFILRSPE  317 (580)
Q Consensus       303 ~~~~~iv~~Ll~~~~  317 (580)
                      +|+.+++++|++++.
T Consensus       356 ~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          356 NNHHNIVDIFDRCRP  370 (373)
T ss_dssp             TTCHHHHHHHHTTC-
T ss_pred             cCCHHHHHHHHhcCc
Confidence            999999999999854

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.1e-40  Score=331.02  Aligned_cols=270  Identities=16%  Similarity=0.132  Sum_probs=225.9

Q ss_pred             hcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393           68 LLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (580)
Q Consensus        68 ~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  147 (580)
                      ..+..|..|.||||+|+..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|++
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   78 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVGEV   78 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            356778899999999999999999999999998875             5788999999999999999999999999995


Q ss_pred             CCcccccCCCCHHHHHHHcCcHHHHHHHHhc----CCCCcCC-----------------CCCCCCccHHHHHHHcC--CH
Q 045393          148 PSSYINKAYQTPLSIAIDARLNDIACFIIDK----SPESLNT-----------------TRLPDELTLIHFVVMRQ--NY  204 (580)
Q Consensus       148 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~~-----------------~~~~~~~t~L~~A~~~~--~~  204 (580)
                      ..   +..|.||||+|+..|+.+++++|++.    +.. ++.                 .+. .|.||||.|+..|  +.
T Consensus        79 ~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~  153 (364)
T 3ljn_A           79 HS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYL  153 (364)
T ss_dssp             CC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGH
T ss_pred             cc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchH
Confidence            43   46899999999999999999999998    432 211                 333 7889999999999  89


Q ss_pred             HHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchh-----cccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393          205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR-----LAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (580)
Q Consensus       205 ~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  279 (580)
                      ++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++     + +..|..|.||||+|+..|+.+++++|+
T Consensus       154 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll  231 (364)
T 3ljn_A          154 EMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFV  231 (364)
T ss_dssp             HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999998765 888899999999999999999999999998887     4 677888999999999999999999999


Q ss_pred             HhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhh---------cccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENL---------INLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~---------~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      ++|++ ++.+|..|+||||+|+..|+.+++++|++++.....         ....+..|.||++.|+..++.+.+..|+.
T Consensus       232 ~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          232 EMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             TTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             HcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence            99998 888999999999999999999999999988544211         12256778899999999888888877776


Q ss_pred             Ccccccccc
Q 045393          351 HKSVNIRAK  359 (580)
Q Consensus       351 ~~~~d~~~~  359 (580)
                      + ++|....
T Consensus       311 ~-~~~~~~~  318 (364)
T 3ljn_A          311 E-KLDEVVR  318 (364)
T ss_dssp             H-HHHHHHT
T ss_pred             H-HHHHHhh
Confidence            5 4444333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.6e-39  Score=311.42  Aligned_cols=266  Identities=17%  Similarity=0.178  Sum_probs=190.6

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393           69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (580)
Q Consensus        69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  148 (580)
                      ++.+|..|+||||+|++.|+.+++++|+++|++.+          .++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   71 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV   71 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc----------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            56789999999999999999999999999987732          23468899999999999999999999999999988


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393          149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (580)
Q Consensus       149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~  228 (580)
                      + ..+..|.||||+|+..|+.+++++|+++++........    ..+                ...   .......+.++
T Consensus        72 ~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~----------------~~~---~~~~~~~~~~~  127 (282)
T 1oy3_D           72 L-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TYL----------------TQS---QDCTPDTSHAP  127 (282)
T ss_dssp             S-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------
T ss_pred             C-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HHh----------------hcc---cccCcchhcch
Confidence            7 57889999999999999999999999988643221110    000                000   11123345667


Q ss_pred             HHHHHHcCChHH-HHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCCHHHHHHHcCCH
Q 045393          229 LHYAAASGNVKM-AQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN-SDRSILHVAAKHGNW  306 (580)
Q Consensus       229 L~~A~~~g~~~~-v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~  306 (580)
                      ++.++..+.... ...+...+.++ +.++..|.||||+|+..|+.+++++|+++|++ ++.++. .|+||||+|+++|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~  205 (282)
T 1oy3_D          128 AAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAA  205 (282)
T ss_dssp             ----------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCH
T ss_pred             hhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCH
Confidence            777666554433 33344444554 67788999999999999999999999999999 677775 499999999999999


Q ss_pred             HHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHh
Q 045393          307 NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR  376 (580)
Q Consensus       307 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~  376 (580)
                      +++++|+++   +++++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|....
T Consensus       206 ~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~a~~~~  269 (282)
T 1oy3_D          206 SVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGG--DKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC----------------
T ss_pred             HHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCC--cccccccccCCcc
Confidence            999999998   455899999999999999999999999999965 999999999  9999999998743

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=310.09  Aligned_cols=258  Identities=16%  Similarity=0.130  Sum_probs=203.3

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCC----------CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393          119 DIEGNTPLHNAVTNQHKRVIRILVEKDS----------VPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL  188 (580)
Q Consensus       119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  188 (580)
                      ..+|.|+||+|+..|+.+.+..++..++          ......+..|.||||+|+..|+.+++++|++.+. +++..+.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCC
Confidence            4579999999999999777777665542          2234568899999999999999999999999984 4555565


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHH
Q 045393          189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE  268 (580)
Q Consensus       189 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  268 (580)
                       .|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++. +. +..|.||||+|+.
T Consensus        91 -~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~  166 (285)
T 3d9h_A           91 -DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAAR  166 (285)
T ss_dssp             -TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHH
T ss_pred             -CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHH
Confidence             899999999999999999999998765 8899999999999999999999999999999887 33 4569999999999


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      .|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++.+.   +++ .|..|+||||+|+..++.+++++|
T Consensus       167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~-~~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGA---DVN-QGKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC---CTT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC---CCC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999 89999999999999999999999999999954   477 489999999999999999999999


Q ss_pred             hcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHh-hhhh
Q 045393          349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTA-YAKR  398 (580)
Q Consensus       349 l~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-ga~~  398 (580)
                      +++ |+|++.+|.  .|+|||++|..         +..++++|+++ |++.
T Consensus       242 l~~-gad~~~~d~--~g~t~l~~A~~---------~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          242 MDF-GADTQAKNA--EGKRPVELVPP---------ESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHT-TCCTTCCCT--TSCCGGGGSCT---------TSHHHHHHHHHC----
T ss_pred             HHC-CCCCCCcCC--CCCCHHHHhcC---------ccHHHHHHHHhhccCC
Confidence            976 999999999  99999999974         24677888887 5543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-38  Score=304.14  Aligned_cols=229  Identities=20%  Similarity=0.230  Sum_probs=181.6

Q ss_pred             hccCCCCCcHHHHHHHcC-------------cHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 045393          116 RMTDIEGNTPLHNAVTNQ-------------HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES  182 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  182 (580)
                      +.+|.+|.||||+|+..|             +.+++++|++.|++.....+..|.||||+|+..|+.+++++|++++. +
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~   82 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-D   82 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-C
Confidence            468899999999999977             89999999999999887789999999999999999999999999984 4


Q ss_pred             cCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcH
Q 045393          183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETP  262 (580)
Q Consensus       183 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  262 (580)
                      ++..+. .|.||||.|+..++.++++.|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||
T Consensus        83 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~  160 (253)
T 1yyh_A           83 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSA  160 (253)
T ss_dssp             TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBH
T ss_pred             CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence            555555 89999999999999999999999998778999999999999999999999999999999987 7788999999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh
Q 045393          263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS  342 (580)
Q Consensus       263 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  342 (580)
                      ||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++   ++++.+|..|+||||+|+.+|+.
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCccccccCCCCHHHHHHHcCCH
Confidence            9999999999999999999999 8999999999999999999999999999995   45899999999999999999999


Q ss_pred             hHHHHhhcC
Q 045393          343 DVVFTLSRH  351 (580)
Q Consensus       343 ~~~~~Ll~~  351 (580)
                      +++++|...
T Consensus       237 ~i~~~l~~~  245 (253)
T 1yyh_A          237 DIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999999865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-38  Score=302.67  Aligned_cols=231  Identities=23%  Similarity=0.304  Sum_probs=182.6

Q ss_pred             cccccCCCCcHHHHHHHhC-------------CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcH
Q 045393           69 LRQKNLMDETALHIAARIG-------------DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK  135 (580)
Q Consensus        69 ~~~~~~~g~tpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~  135 (580)
                      ++.+|..|.||||+|+..|             +.+++++|++.|++++.            ..|..|.||||+|+..|+.
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~   70 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRS   70 (253)
T ss_dssp             -------------------------------------------------------------CCCTTSCCHHHHHHHTTCH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc------------ccCCCCCcHHHHHHHcCCH
Confidence            6788999999999999987             89999999999988642            3688999999999999999


Q ss_pred             HHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC
Q 045393          136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK  215 (580)
Q Consensus       136 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~  215 (580)
                      +++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++.+.+..+. .|.||||.|+..++.++++.|++.+.
T Consensus        71 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           71 DAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            99999999999887 57899999999999999999999999999767777766 89999999999999999999999877


Q ss_pred             ccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCC
Q 045393          216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS  295 (580)
Q Consensus       216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  295 (580)
                      + ++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus       149 ~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t  225 (253)
T 1yyh_A          149 D-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRL  225 (253)
T ss_dssp             C-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             C-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCC
Confidence            6 8899999999999999999999999999999988 77899999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCc
Q 045393          296 ILHVAAKHGNWNIVSFILRSP  316 (580)
Q Consensus       296 ~Lh~A~~~~~~~iv~~Ll~~~  316 (580)
                      |||+|+++|+.+++++|....
T Consensus       226 pl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999763

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.1e-39  Score=325.39  Aligned_cols=262  Identities=18%  Similarity=0.151  Sum_probs=232.4

Q ss_pred             cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393           28 STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP  107 (580)
Q Consensus        28 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  107 (580)
                      ...|.+|.||||+|+..|+.++|++|++.|.+         ++.+|..|.||||+|+..|+.+++++|+++|++.     
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----   79 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVS---------PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----   79 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence            34677899999999999999999999999988         8899999999999999999999999999999864     


Q ss_pred             cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCc----------------ccccCCCCHHHHHHHcC
Q 045393          108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSS----------------YINKAYQTPLSIAIDAR  167 (580)
Q Consensus       108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~~  167 (580)
                                .+.+|.||||+|+..|+.+++++|++.    +.++..                ..+..|.||||+|+..|
T Consensus        80 ----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  149 (364)
T 3ljn_A           80 ----------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG  149 (364)
T ss_dssp             ----------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSC
T ss_pred             ----------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcC
Confidence                      345799999999999999999999998    665542                16778999999999999


Q ss_pred             --cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCcc----ccccCCCCChHHHHHHHcCChHHH
Q 045393          168 --LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL----IDRLDWHQRNPLHYAAASGNVKMA  241 (580)
Q Consensus       168 --~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~d~~g~t~L~~A~~~g~~~~v  241 (580)
                        +.+++++|++++. +++..+. .|.||||.|+..|+.++++.|++.+...    ++..|..|.||||+|+..|+.+++
T Consensus       150 ~~~~~~v~~Ll~~ga-~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  227 (364)
T 3ljn_A          150 PEYLEMIKILVQLGA-SPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA  227 (364)
T ss_dssp             GGGHHHHHHHHHHTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred             CchHHHHHHHHHcCC-CCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence              9999999999984 5566665 8999999999999999999999987653    788899999999999999999999


Q ss_pred             HHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-----------cccccCCCCCHHHHHHHcCCHHHHH
Q 045393          242 QRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----------IEIRNNSDRSILHVAAKHGNWNIVS  310 (580)
Q Consensus       242 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----------~~~~d~~g~t~Lh~A~~~~~~~iv~  310 (580)
                      ++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++.           ....+..|++|++.|+..++.+.+.
T Consensus       228 ~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~  306 (364)
T 3ljn_A          228 MRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL  306 (364)
T ss_dssp             HHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHH
T ss_pred             HHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHH
Confidence            9999999998 788999999999999999999999999998662           1225678999999999999888888


Q ss_pred             HHhcCc
Q 045393          311 FILRSP  316 (580)
Q Consensus       311 ~Ll~~~  316 (580)
                      .|+..+
T Consensus       307 ~ll~~~  312 (364)
T 3ljn_A          307 QLLQEK  312 (364)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777663

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-37  Score=301.44  Aligned_cols=269  Identities=20%  Similarity=0.181  Sum_probs=195.8

Q ss_pred             cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393           28 STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP  107 (580)
Q Consensus        28 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  107 (580)
                      ...|.+|+||||+|+..|+.+++++|++.|++      ...++.+|..|.||||+|+..|+.+++++|+++|++++    
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----   72 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL----   72 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----
Confidence            45789999999999999999999999998876      12367889999999999999999999999999999876    


Q ss_pred             cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCC
Q 045393          108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR  187 (580)
Q Consensus       108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  187 (580)
                               .+|..|.||||+|+..|+.+++++|++++++.......   +.+                ...   .....
T Consensus        73 ---------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~----------------~~~---~~~~~  121 (282)
T 1oy3_D           73 ---------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TYL----------------TQS---QDCTP  121 (282)
T ss_dssp             ---------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             ---------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HHh----------------hcc---cccCc
Confidence                     47889999999999999999999999999865421110   000                000   00111


Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH
Q 045393          188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA  267 (580)
Q Consensus       188 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  267 (580)
                      . .+.++++.+...+........+......++..+..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~  200 (282)
T 1oy3_D          122 D-TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (282)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             c-hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH
Confidence            1 556677777766666555556655566688899999999999999999999999999999984443355999999999


Q ss_pred             HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh
Q 045393          268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS  342 (580)
Q Consensus       268 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~  342 (580)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|   ++++.+|.+|.|||++|....+.
T Consensus       201 ~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          201 EAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC----------------
T ss_pred             HcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccccCCcccc
Confidence            99999999999999999 8999999999999999999999999999994   45999999999999999976543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.8e-37  Score=288.83  Aligned_cols=226  Identities=21%  Similarity=0.326  Sum_probs=189.1

Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHH
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI  195 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L  195 (580)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+. .|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDA-EGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCT-TSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCC-CCCcHH
Confidence            4688999999999999999999999999999876 468889999999999999999999999874 3444444 788888


Q ss_pred             HHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393          196 HFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL  275 (580)
Q Consensus       196 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  275 (580)
                      |.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHH
Confidence            88888888888888888886667888888888888888888888888888888776 66777888888888888888888


Q ss_pred             HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      ++|++++++ ++.+|..|+||||+|++.++.+++++|++++   ++++.+|.+|+||||+|+.+++.+.+..|+
T Consensus       161 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            888888888 7788888888888888888888888888874   447888888888888888888775554444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.6e-37  Score=292.21  Aligned_cols=232  Identities=24%  Similarity=0.288  Sum_probs=182.0

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHh----cCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 045393           69 LRQKNLMDETALHIAARIGDRAIVSEIMK----YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK  144 (580)
Q Consensus        69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  144 (580)
                      .+.+|.+|+||||+|++.|+.+++++|++    .+.+++             .+|..|.||||+|+..|+.+++++|+++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   68 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTA   68 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------cccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45678889999999999999999998887    455543             4678899999999999999999999998


Q ss_pred             CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCC
Q 045393          145 DSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH  224 (580)
Q Consensus       145 ~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~  224 (580)
                      |++++ ..+..|.||||+|+..|+.+++++|++.++..                                ...++..+..
T Consensus        69 g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~~~~  115 (241)
T 1k1a_A           69 GASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPG--------------------------------TLDLEARNYD  115 (241)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT--------------------------------SCCTTCCCTT
T ss_pred             CCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--------------------------------cccccccCcC
Confidence            88776 45777888888888888888888888776421                                0124556677


Q ss_pred             CChHHHHHHHcCChHHHHHHHHhchhcccccC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc
Q 045393          225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRD-CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH  303 (580)
Q Consensus       225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  303 (580)
                      |.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            888888888888888888888888877 3444 7788888888888888888888888888 788888888888888888


Q ss_pred             CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      |+.+++++|+++|   ++++.+|..|+||||+|+..|+.++++.|++.
T Consensus       194 ~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          194 GLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TCHHHHHHHHHTT---CCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             CCHHHHHHHHhcC---CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            8888888888874   44888888888888888888888888888754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-36  Score=287.54  Aligned_cols=228  Identities=19%  Similarity=0.296  Sum_probs=211.7

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393           69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (580)
Q Consensus        69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  148 (580)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++             ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   70 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV   70 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            66789999999999999999999999999998865             46889999999999999999999999999987


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393          149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (580)
Q Consensus       149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~  228 (580)
                      + ..+..|.||||+|+..|+.+++++|++.++.+.+..+. .|.||||.|+..++.++++.|++.+.+ ++..+..|.||
T Consensus        71 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~  147 (237)
T 3b7b_A           71 D-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENIC  147 (237)
T ss_dssp             C-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCH
Confidence            6 57889999999999999999999999999767776666 899999999999999999999998876 88899999999


Q ss_pred             HHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHH
Q 045393          229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNI  308 (580)
Q Consensus       229 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  308 (580)
                      ||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+.
T Consensus       148 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          148 LHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999988 77789999999999999999999999999999 89999999999999999999876


Q ss_pred             HHHHhc
Q 045393          309 VSFILR  314 (580)
Q Consensus       309 v~~Ll~  314 (580)
                      +..+++
T Consensus       226 ~~~l~~  231 (237)
T 3b7b_A          226 ALQMSK  231 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.3e-37  Score=289.75  Aligned_cols=214  Identities=26%  Similarity=0.330  Sum_probs=176.4

Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVE----KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                      +.+|.+|.||||+|++.|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|++++            
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------   69 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAG------------   69 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT------------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcC------------
Confidence            3567888888888888888888888876    454443 34555666666666666666666666554            


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhch----hcccccCCCCCcHHHHHH
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK----RLAYKRDCNGETPLHLAA  267 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~tpL~~A~  267 (580)
                                             .. ++..+..|.||||+|+..|+.+++++|++.++    +. +..+..|.||||+|+
T Consensus        70 -----------------------~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           70 -----------------------AS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAV  124 (241)
T ss_dssp             -----------------------CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHH
T ss_pred             -----------------------CC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHH
Confidence                                   22 45567778899999999999999999999886    44 667889999999999


Q ss_pred             HcCcHHHHHHHHHhCCCcccccc-CCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          268 ENGKLKVLKLLINKYPDAIEIRN-NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       268 ~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                      ..|+.+++++|++++++ ++.++ ..|+||||+|+.+|+.+++++|++++   .+++.+|..|+||||+|+..|+.++++
T Consensus       125 ~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          125 NTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999 77777 88999999999999999999999994   559999999999999999999999999


Q ss_pred             HhhcCcccccccccccCCCCCHHHHHHH
Q 045393          347 TLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +|+++ |+|++.+|.  .|+||+++|..
T Consensus       201 ~Ll~~-ga~~~~~~~--~g~tpl~~A~~  225 (241)
T 1k1a_A          201 TLVRS-GADSSLKNC--HNDTPLMVARS  225 (241)
T ss_dssp             HHHHT-TCCTTCCCT--TSCCTTTTCSS
T ss_pred             HHHhc-CCCCCCcCC--CCCCHHHHHHh
Confidence            99975 999999999  99999999876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.3e-37  Score=301.17  Aligned_cols=274  Identities=20%  Similarity=0.234  Sum_probs=206.8

Q ss_pred             HHHHcCCHHHHHHHhhhcCc---------ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCC
Q 045393            7 EVLRHGDEYKIKQLALRQDI---------FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE   77 (580)
Q Consensus         7 ~A~~~g~~~~~~~ll~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~   77 (580)
                      .+++.+..+.++.++.....         ....+.+|.||||.||..|+.+++++|+++|++         ++..|..|.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~   74 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD---------INYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC---------TTCBCTTCC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCC
Confidence            46778888888888876422         112334678999999999999999999999988         888899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCC
Q 045393           78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ  157 (580)
Q Consensus        78 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  157 (580)
                      ||||+|+..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~  140 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANIN-------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGD  140 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCC
Confidence            99999999999999999999998865             478889999999999999999999999998876 4688889


Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393          158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (580)
Q Consensus       158 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~  237 (580)
                      ||||+|+..++.++++.++.....+.+...                                   ..+.++++       
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-----------------------------------~~~~~~~~-------  178 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEAAR-----------------------------------KEEERIML-------  178 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHH-----------------------------------HHHHHHHH-------
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchhhh-----------------------------------hhhhhHHH-------
Confidence            999999888888888888776432211100                                   00111111       


Q ss_pred             hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393          238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE  317 (580)
Q Consensus       238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  317 (580)
                       ..++.++..+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++| 
T Consensus       179 -~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-  255 (299)
T 1s70_B          179 -RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL-  255 (299)
T ss_dssp             -HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             -HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-
Confidence             2234455555544455666788888888888888888888888877 7778888888888888888888888888874 


Q ss_pred             hhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       318 ~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                        ++++.+|..|+||||+|+.. ..+.++.+++.
T Consensus       256 --ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          256 --CDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             --CCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             --CCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence              44788888888888888653 34555555543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.6e-36  Score=281.63  Aligned_cols=224  Identities=25%  Similarity=0.301  Sum_probs=174.6

Q ss_pred             CCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393           32 PGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL  111 (580)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (580)
                      ..+++|||.|+..|+.+.+++|++.++.        ..+.+|..|.||||+|+..|+.+++++|+++|++++        
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------   67 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKS--------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--------   67 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGG--------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--------
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchh--------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC--------
Confidence            4578899999999999999999988876        577788889999999999999999999999888765        


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                           .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|++++.           
T Consensus        68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----------  130 (231)
T 3aji_A           68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA-----------  130 (231)
T ss_dssp             -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence                 467889999999999999999999999888775 456677777777777777777777776653           


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK  271 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  271 (580)
                                              . ++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+
T Consensus       131 ------------------------~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          131 ------------------------N-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             ------------------------C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC
T ss_pred             ------------------------C-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCC
Confidence                                    1 3444556677777777777777777777777666 5567777777777777777


Q ss_pred             HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      .+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++
T Consensus       185 ~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          185 VEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            7777777777777 677777777777777777777777777765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.6e-36  Score=280.84  Aligned_cols=228  Identities=23%  Similarity=0.283  Sum_probs=165.3

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHH
Q 045393          119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV  198 (580)
Q Consensus       119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A  198 (580)
                      +..+.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|++                     
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---------------------   61 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------------------   61 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH---------------------
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH---------------------
Confidence            34455666666666666666666665544433444445555555555555555555544                     


Q ss_pred             HHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 045393          199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL  278 (580)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  278 (580)
                                    .+.. ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|
T Consensus        62 --------------~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L  125 (231)
T 3aji_A           62 --------------LGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVML  125 (231)
T ss_dssp             --------------TTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --------------hCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                          4333 5556677788888888888888888888887776 56677888888888888888888888


Q ss_pred             HHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCccccccc
Q 045393          279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA  358 (580)
Q Consensus       279 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~  358 (580)
                      ++++++ ++.+|..|+||||+|+..|+.+++++|+++   +.+++.+|..|+||||+|+..++.+++++|+++ |+|++.
T Consensus       126 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~  200 (231)
T 3aji_A          126 LEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYI  200 (231)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCC
T ss_pred             HHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCC
Confidence            888887 777888888888888888888888888887   344788888888888888888888888888865 788888


Q ss_pred             ccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393          359 KNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK  397 (580)
Q Consensus       359 ~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  397 (580)
                      +|.  .|+||+++|..       ....++.++|.++|++
T Consensus       201 ~~~--~g~t~l~~A~~-------~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          201 ENK--EEKTPLQVAKG-------GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCT--TSCCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred             CCC--CCCCHHHHHHh-------hHHHHHHHHHcccccc
Confidence            888  88888888866       4566777888777764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-37  Score=301.91  Aligned_cols=271  Identities=18%  Similarity=0.219  Sum_probs=208.3

Q ss_pred             HHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccC
Q 045393           40 MAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD  119 (580)
Q Consensus        40 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d  119 (580)
                      .++..++.+.++.++..................+..|.||||.|+..|+.+++++|+++|++++             ..|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~   70 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------------YAN   70 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccC
Confidence            5677888888888888776522221122223345567899999999999999999999998865             478


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHH
Q 045393          120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVV  199 (580)
Q Consensus       120 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~  199 (580)
                      ..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++..                  
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------  131 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------------  131 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------------
Confidence            899999999999999999999999998876 4677788888888888888888888776632                  


Q ss_pred             HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (580)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  279 (580)
                                        ++..+..|.||||+|+..++.++++.++.......+..+..+.++++        ..++.++
T Consensus       132 ------------------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l  185 (299)
T 1s70_B          132 ------------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL  185 (299)
T ss_dssp             ------------------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             ------------------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH
Confidence                              33345556666666666666666666665432221221212222222        3455667


Q ss_pred             HhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccc
Q 045393          280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK  359 (580)
Q Consensus       280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~  359 (580)
                      ..+.......+..|.||||+|+.+|+.+++++|++.+   .++|.+|..|+||||+|+..|+.+++++|+++ |+|++.+
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~  261 (299)
T 1s70_B          186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV  261 (299)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCc
Confidence            7776656777889999999999999999999999984   55999999999999999999999999999976 9999999


Q ss_pred             cccCCCCCHHHHHHH
Q 045393          360 NHSARSNTALEIAEI  374 (580)
Q Consensus       360 n~~~~g~t~l~~a~~  374 (580)
                      |.  .|+||+++|.+
T Consensus       262 d~--~g~t~l~~A~~  274 (299)
T 1s70_B          262 NK--VGQTAFDVADE  274 (299)
T ss_dssp             CT--TSCCTTTSCCS
T ss_pred             CC--CCCCHHHHHHH
Confidence            99  99999999965

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=292.79  Aligned_cols=224  Identities=17%  Similarity=0.253  Sum_probs=129.0

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcH-HHHHHHHHcCCCC
Q 045393           70 RQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK-RVIRILVEKDSVP  148 (580)
Q Consensus        70 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~~  148 (580)
                      ..+|..+.+||+.|++.|+.++|++|++.+++.....     ...++..+..|.||||.|+..++. +++++|++.|+++
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv   79 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV   79 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc-----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC
Confidence            4467778899999999999999999999987643211     223456788899999999987775 5889999999988


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393          149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP  228 (580)
Q Consensus       149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~  228 (580)
                      + ..|.+|.||||+|+..|+.+++++|++.+.+ +...+. .|.||+|.|+..++.++++.|++.+.+ ++.+|..|+||
T Consensus        80 n-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~Tp  155 (269)
T 4b93_B           80 N-VTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTP  155 (269)
T ss_dssp             T-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCH
T ss_pred             C-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCC-CCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            7 5788899999999999999999999888743 333333 566666666666666666666665544 55566666666


Q ss_pred             HHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcC
Q 045393          229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG  304 (580)
Q Consensus       229 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  304 (580)
                      ||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++++
T Consensus       156 L~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCC
Confidence            66666666666666666666555 45555666666666666666666666666665 5666666666666665544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.9e-35  Score=277.82  Aligned_cols=212  Identities=20%  Similarity=0.268  Sum_probs=140.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC-CcCC-CCCCCCccHHHHHH
Q 045393          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE-SLNT-TRLPDELTLIHFVV  199 (580)
Q Consensus       122 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~-~~~~-~~~~~~~t~L~~A~  199 (580)
                      |+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.++. +... .+. .|.||||.|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHH
Confidence            678999999999999999999988877766788888888888888888888888888732 1222 223 5666666666


Q ss_pred             HcCCHHHHHHHHhhC-CccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 045393          200 MRQNYDIMVKILGTN-KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL  278 (580)
Q Consensus       200 ~~~~~~~~~~Ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  278 (580)
                      ..|+.++++.|++.+ ...++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            666666666666654 1235555666666666666666666666666666555 45555666666666666666666666


Q ss_pred             HHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh-cCcchhhhcccccCCCCcHHHHHHh
Q 045393          279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL-RSPEMENLINLVDRNGNTPLHLAAM  338 (580)
Q Consensus       279 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~~n~~d~~G~T~Lh~A~~  338 (580)
                      +++++..++.+|..|+||||+|+..|+.+++++|+ +.   +++++.+|.+|.||||+|+.
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSS
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHH
Confidence            66662225666666666666666666666666666 44   33356666666666666643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.3e-35  Score=278.89  Aligned_cols=211  Identities=23%  Similarity=0.260  Sum_probs=193.8

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhC--Cccccc-cCCCCChHHHHH
Q 045393          156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN--KELIDR-LDWHQRNPLHYA  232 (580)
Q Consensus       156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~-~d~~g~t~L~~A  232 (580)
                      |.||||.|+..|+.+++++|++.++......+. .|.||||.|+..|+.++++.|++.+  .. ++. .+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHHHH
Confidence            689999999999999999999999766555565 8999999999999999999999998  44 444 889999999999


Q ss_pred             HHcCChHHHHHHHHhc--hhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHH
Q 045393          233 AASGNVKMAQRLLEES--KRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS  310 (580)
Q Consensus       233 ~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  310 (580)
                      +..|+.+++++|+++|  ++. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998  665 67788999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          311 FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       311 ~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +|++.+.  .++|.+|..|+||||+|+..|+.+++++|+++.|+|++.+|.  .|+||+++|..
T Consensus       158 ~Ll~~g~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~--~g~t~l~~A~~  217 (228)
T 2dzn_A          158 LLCGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN--KGAKAEDVALN  217 (228)
T ss_dssp             HHHTTTC--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT--TSCBGGGGCSS
T ss_pred             HHHhcCc--ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC--CCCcHHHHHHH
Confidence            9999851  458999999999999999999999999999667999999999  99999999964

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=274.17  Aligned_cols=228  Identities=18%  Similarity=0.206  Sum_probs=145.1

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393           70 RQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus        70 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      +..|..|.||||.|+..|+.+++++|++.|.+++             .+|..|.||||+|+..|+.+++++|++.+++..
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   69 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD   69 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence            4567788888888888888888888888887755             367788888888888888888888888888777


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHH
Q 045393          150 SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL  229 (580)
Q Consensus       150 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L  229 (580)
                      ...+..|.||||.|+..|+.+++++|++.+. +++..+. .|.+|||.|+..++.++++.|++.+.. ++..+..|.|||
T Consensus        70 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l  146 (240)
T 3eu9_A           70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA-DPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPL  146 (240)
T ss_dssp             CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             hhcCCcCCChhHHHHHcCCHHHHHHHHHcCC-CCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHH
Confidence            6666667788888888888888887777763 2233333 455555555555555555555555443 445555555555


Q ss_pred             HHHHHcCC-hHHHHHHHHhchhcccccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393          230 HYAAASGN-VKMAQRLLEESKRLAYKRDC-NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN  307 (580)
Q Consensus       230 ~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  307 (580)
                      |.|+..++ .+++++|++.+++. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+
T Consensus       147 ~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~  224 (240)
T 3eu9_A          147 MWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVW  224 (240)
T ss_dssp             HHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHH
Confidence            55554433 45555555555544 22222 455555555555555555555555555 4555555555555555555555


Q ss_pred             HHHHHhcC
Q 045393          308 IVSFILRS  315 (580)
Q Consensus       308 iv~~Ll~~  315 (580)
                      ++++|++.
T Consensus       225 ~v~~L~~~  232 (240)
T 3eu9_A          225 MINHLQEA  232 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.2e-35  Score=286.95  Aligned_cols=236  Identities=19%  Similarity=0.190  Sum_probs=152.2

Q ss_pred             HHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCC
Q 045393            9 LRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD   88 (580)
Q Consensus         9 ~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~   88 (580)
                      ++..+.+.++.++..++ .+..|..|.||||+|+..|+.+++++|++.|++         ++.+  +|+||||+|+..|+
T Consensus         7 i~~~~~~~v~~lL~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~--~g~t~L~~A~~~g~   74 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---------KNLL--ENEFPLHQAATLED   74 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG---------GSCC--TTCCHHHHHTTSSS
T ss_pred             HHhcCHHHHHHHHHhCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------CCCC--CCCCHHHHHHHcCC
Confidence            34555555555555443 334666777777777777777777777777666         4444  36777777777777


Q ss_pred             HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCC-CCHHHHHHHcC
Q 045393           89 RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDAR  167 (580)
Q Consensus        89 ~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~  167 (580)
                      .+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..|
T Consensus        75 ~~~v~~Ll~~ga~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~  140 (285)
T 3kea_A           75 TKIVKILLFSGLDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLN  140 (285)
T ss_dssp             CHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCC-------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcC
Confidence            777777777766654             356667777777777777777777777766655 344444 56666666666


Q ss_pred             cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh
Q 045393          168 LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE  247 (580)
Q Consensus       168 ~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  247 (580)
                      +.+++++|+++++..                                   .+  ...|.||||+|+..|+.+++++|+++
T Consensus       141 ~~~~v~~Ll~~g~~~-----------------------------------~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (285)
T 3kea_A          141 DVSIVSYFLSEIPST-----------------------------------FD--LAILLSCIHITIKNGHVDMMILLLDY  183 (285)
T ss_dssp             CHHHHHHHHTTSCTT-----------------------------------CC--CSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCcc-----------------------------------cc--ccCCccHHHHHHHcChHHHHHHHHHc
Confidence            666666666655321                                   11  11566777777777777777777777


Q ss_pred             chhcccccCCCCCcH-HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393          248 SKRLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP  316 (580)
Q Consensus       248 ~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  316 (580)
                      |+++ +.++..|.|| ||+|+..|+.+++++|+++|++ ++.+|       +.|+..|+.+++++|+++|
T Consensus       184 gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          184 MTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             HHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHH
T ss_pred             CCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcC
Confidence            7666 5566677776 7777777777777777777776 55555       2445677777777777763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=274.07  Aligned_cols=227  Identities=19%  Similarity=0.178  Sum_probs=207.8

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHH
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH  196 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  196 (580)
                      ..|..|.|||+.|++.|+.+++++|++.|.+++ ..+..|.||||.|+..|+.+++++|++++.......+. .|.||||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~   81 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLH   81 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhH
Confidence            467889999999999999999999999998876 57889999999999999999999999999755544444 6999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc-HHHH
Q 045393          197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK-LKVL  275 (580)
Q Consensus       197 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v  275 (580)
                      .|+..++.++++.|++.+.. ++..+..|.||||.|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHH
Confidence            99999999999999998766 7888999999999999999999999999999887 6788999999999997666 8999


Q ss_pred             HHHHHhCCCccccccC-CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          276 KLLINKYPDAIEIRNN-SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ++|++.+++ ++..+. .|+||||+|+.+|+.+++++|++++   .+++.+|..|.||||+|+..|+.+++++|++.
T Consensus       160 ~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          160 RLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG---ANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            999999999 777776 9999999999999999999999984   55899999999999999999999999999975

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=286.06  Aligned_cols=220  Identities=23%  Similarity=0.296  Sum_probs=111.8

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHH
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH  196 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~  196 (580)
                      .+|..+.+||+.|+..|+.++|++|++.+++......                           ...+..+. .+.+||+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~-~~~t~L~   57 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADP-EFCHPLC   57 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCc-cCCCHHH
Confidence            3677888999999999999999999998875431100                           00011111 3445555


Q ss_pred             HHHHcCCHH-HHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393          197 FVVMRQNYD-IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL  275 (580)
Q Consensus       197 ~A~~~~~~~-~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  275 (580)
                      .|+..++.+ +++.|++.+.+ ++..|.+|+||||+|+..|+.+++++|++.++++ +.++..|.||+|.|+..++.+++
T Consensus        58 ~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~  135 (269)
T 4b93_B           58 QCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVV  135 (269)
T ss_dssp             -----------------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHH
Confidence            554444332 33444444333 5555555555555555555555555555555554 44455555555555555555555


Q ss_pred             HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      ++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++.|   +++|.+|..|+||||+|+..|+.+++++|+++ |+|
T Consensus       136 ~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad  210 (269)
T 4b93_B          136 KCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHG---ASINASNNKGNTALHEAVIEKHVFVVELLLLH-GAS  210 (269)
T ss_dssp             HHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            555555555 5555555555555555555555555555552   33555555555555555555555555555543 555


Q ss_pred             cccccccCCCCCHHHHHH
Q 045393          356 IRAKNHSARSNTALEIAE  373 (580)
Q Consensus       356 ~~~~n~~~~g~t~l~~a~  373 (580)
                      +|.+|.  .|+|||++|.
T Consensus       211 ~~~~d~--~G~TpL~~A~  226 (269)
T 4b93_B          211 VQVLNK--RQRTAVDCAE  226 (269)
T ss_dssp             SCCCCT--TSCCSGGGSC
T ss_pred             CCCcCC--CCCCHHHHHH
Confidence            555555  5555555554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.6e-34  Score=280.89  Aligned_cols=236  Identities=14%  Similarity=0.132  Sum_probs=189.2

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393           69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP  148 (580)
Q Consensus        69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  148 (580)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++.             .  +|.||||+|+..|+.+++++|+++|+++
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   88 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------L--ENEFPLHQAATLEDTKIVKILLFSGLDD   88 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-------------C--TTCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------C--CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            567788888888888888888888888888877652             2  4788888888888888888888888876


Q ss_pred             CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCC-Ch
Q 045393          149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-RN  227 (580)
Q Consensus       149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~t  227 (580)
                      + ..+..|.||||+|+..|+.+++++|++++                                   .+ ++..+..| .|
T Consensus        89 ~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------------------------------a~-~~~~~~~g~~t  131 (285)
T 3kea_A           89 S-QFDDKGNTALYYAVDSGNMQTVKLFVKKN-----------------------------------WR-LMFYGKTGWKT  131 (285)
T ss_dssp             T-CCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----------------------------------GG-GGGCSSSGGGS
T ss_pred             C-CcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----------------------------------CC-CCccCCCCCCC
Confidence            5 35556666666666666666666555554                                   32 56677778 79


Q ss_pred             HHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH-HHHHHHcCCH
Q 045393          228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-LHVAAKHGNW  306 (580)
Q Consensus       228 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~  306 (580)
                      |||+|+..|+.+++++|+++|++...  ...|.||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+|+.
T Consensus       132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~  208 (285)
T 3kea_A          132 SFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDI  208 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCH
Confidence            99999999999999999999977622  22899999999999999999999999999 89999999998 9999999999


Q ss_pred             HHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393          307 NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       307 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      +++++|+++|.   +++.+|       +.|+..|+.+++++|+++ |++++....    ...+++...
T Consensus       209 ~~v~~Ll~~ga---d~~~~~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~----~~~~~~~~~  261 (285)
T 3kea_A          209 EMLQALFKYDI---NIYSAN-------LENVLLDDAEIAKMIIEK-HVEYKSDSY----TKDLDIVKN  261 (285)
T ss_dssp             HHHHHHTTSCB---CSTTTT-------GGGGTTTCHHHHHHHHHH-HHHHTTCTT----TTTCHHHHT
T ss_pred             HHHHHHHHcCC---CCCCCC-------hhhhhcCCHHHHHHHHHc-CCCCCCccc----cchHHHHhh
Confidence            99999999954   478777       356789999999999975 888776544    345566654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-34  Score=270.16  Aligned_cols=215  Identities=19%  Similarity=0.222  Sum_probs=191.8

Q ss_pred             CcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHh
Q 045393          133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG  212 (580)
Q Consensus       133 ~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~  212 (580)
                      |+.+++++|+++|++.....+..|.||||+|+..|+.+++++|++++. +++..+. .|.||||.|+..++.++++.|++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDN-MGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC-CCCCcCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            677888999999998887778899999999999999999999999874 4455555 88999999999999999999999


Q ss_pred             hCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC
Q 045393          213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS  292 (580)
Q Consensus       213 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  292 (580)
                      .++..++..+..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence            988778889999999999999999999999999999887 67788999999999999999999999999998 8999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          293 DRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       293 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      |+||||+|+++|+.+++++|++++   ++++.+|..|.||||+|+..++.+++++|+++ |+.
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~  216 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV  216 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcC---CCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence            999999999999999999999994   45899999999999999999999999999976 443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.6e-34  Score=268.18  Aligned_cols=215  Identities=22%  Similarity=0.310  Sum_probs=197.1

Q ss_pred             CCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHc
Q 045393           87 GDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA  166 (580)
Q Consensus        87 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  166 (580)
                      |+.+++++|+++|++++.            ..|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..
T Consensus         2 g~~~~i~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   68 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSA   68 (223)
T ss_dssp             ---CCEETTEETTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCccc------------ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHc
Confidence            678899999999988653            358899999999999999999999999999887 5789999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHH
Q 045393          167 RLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE  246 (580)
Q Consensus       167 ~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  246 (580)
                      |+.+++++|+++++...+..+. .|.||||.|+..++.++++.|++.+.. ++..|..|.||||+|+..|+.+++++|++
T Consensus        69 ~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (223)
T 2f8y_A           69 DAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK  146 (223)
T ss_dssp             TCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999767776666 899999999999999999999998766 88899999999999999999999999999


Q ss_pred             hchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393          247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM  318 (580)
Q Consensus       247 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  318 (580)
                      +|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++++.+++++|++++..
T Consensus       147 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          147 NGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             TTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             cCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99887 77899999999999999999999999999999 899999999999999999999999999998653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-36  Score=297.23  Aligned_cols=292  Identities=11%  Similarity=0.023  Sum_probs=168.6

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393           33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE  112 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (580)
                      .+.+|+|    ....++|++|+++|++         ++..+..|.|+++     |+.++++.|+++|.+++.........
T Consensus        22 ~~~~~~~----~~~~dlv~~ll~~ga~---------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~   83 (327)
T 1sw6_A           22 RTAGPII----TFTHDLTSDFLSSPLK---------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLN   83 (327)
T ss_dssp             ---CCEE----ECCTTCCCSTTTSSCC---------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------
T ss_pred             ccccchh----hhcCchHHHHhhCCcc---------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhh
Confidence            3455565    4666889999999998         8999999999988     99999999999997754210000000


Q ss_pred             h-hh---hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393          113 S-LF---RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL  188 (580)
Q Consensus       113 ~-~l---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  188 (580)
                      . ..   ........+.+|.|+..+..+++++|++.|.+++...+..|.||||+|+..|+.+++++|++++. +++..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~n~~d~  162 (327)
T 1sw6_A           84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGDN  162 (327)
T ss_dssp             --------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCCT
T ss_pred             cccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCC
Confidence            0 00   00111122335777777777778888877777764467777777777777777777777777773 3444444


Q ss_pred             CCCccHHHHHHHcCC---HHHHHHHHhhCCccccccCCCCChHHHHHHH----cCChHHHHHHHHhchhcccccCCCCCc
Q 045393          189 PDELTLIHFVVMRQN---YDIMVKILGTNKELIDRLDWHQRNPLHYAAA----SGNVKMAQRLLEESKRLAYKRDCNGET  261 (580)
Q Consensus       189 ~~~~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~~~~~~~g~t  261 (580)
                       .|.||||.|+..|+   .+.++.|++.....++.+|..|+||||+|+.    .|+.+++++|++.+........  +  
T Consensus       163 -~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--~--  237 (327)
T 1sw6_A          163 -MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--N--  237 (327)
T ss_dssp             -TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--G--
T ss_pred             -CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--c--
Confidence             66677777776666   4555555555544466666666666666666    6666666666665432210000  0  


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCC
Q 045393          262 PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH  341 (580)
Q Consensus       262 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  341 (580)
                                ..+...+.+.+++ ++.+|..|+||||.|+.      +++|++.     ++|.+|.+|+||||+|+..|+
T Consensus       238 ----------~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          238 ----------RPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGN  295 (327)
T ss_dssp             ----------CCEEEC-----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCC
T ss_pred             ----------hHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCC
Confidence                      0000001122555 56667777777777664      6666654     266677777777777777777


Q ss_pred             hhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393          342 SDVVFTLSRHKSVNIRAKNHSARSNTALEIAE  373 (580)
Q Consensus       342 ~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~  373 (580)
                      .+++++|+++ |+|++.+|.  .|+|||++|.
T Consensus       296 ~~~v~~Ll~~-Gad~~~~d~--~G~TpL~~A~  324 (327)
T 1sw6_A          296 ISIVDALLDY-GADPFIANK--SGLRPVDFGA  324 (327)
T ss_dssp             HHHHHHHHHT-TCCTTCCCT--TSCCGGGGTC
T ss_pred             HHHHHHHHHc-CCCCcccCC--CCCCHHHHHH
Confidence            7777777754 677777777  7777777664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-35  Score=292.36  Aligned_cols=284  Identities=14%  Similarity=0.114  Sum_probs=202.6

Q ss_pred             HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhc--------ccccCCCCcHHH
Q 045393           10 RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLL--------RQKNLMDETALH   81 (580)
Q Consensus        10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------~~~~~~g~tpLh   81 (580)
                      .....+++++|+++|...+..+..|.|+++     |+.++|+.|+++|.++....-....        ..+.....+.+|
T Consensus        28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (327)
T 1sw6_A           28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH  102 (327)
T ss_dssp             EECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred             hhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhH
Confidence            344556788999999888888999999988     9999999999999762211000000        001112234468


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhc-cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM-TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPL  160 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL  160 (580)
                      .|+..+..++++.|++.|.+++             . +|.+|.||||+|+..|+.++|++|+++|++++ ..+..|.|||
T Consensus       103 ~a~~~~~~~~~~~l~~~g~dvn-------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpL  168 (327)
T 1sw6_A          103 VSFDSLLQEVNDAFPNTQLNLN-------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCL  168 (327)
T ss_dssp             -CHHHHHHHHHHHCTTSCCCSC-------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHH
T ss_pred             HHHHhhHHHHHHHHHhcCCCcc-------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHH
Confidence            8999999999999999999876             4 68899999999999999999999999999987 6899999999


Q ss_pred             HHHHHcCc---HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHH----cCCHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 045393          161 SIAIDARL---NDIACFIIDKSPESLNTTRLPDELTLIHFVVM----RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA  233 (580)
Q Consensus       161 ~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~----~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~  233 (580)
                      |+|+..|+   .++++.|++.+...++..+. .|.||||.|+.    .|+.++++.|++.........            
T Consensus       169 h~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~------------  235 (327)
T 1sw6_A          169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK------------  235 (327)
T ss_dssp             HHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG------------
T ss_pred             HHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc------------
Confidence            99999998   67788888776555666666 99999999999    899999999998754321110            


Q ss_pred             HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393          234 ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL  313 (580)
Q Consensus       234 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  313 (580)
                        +...+...+.+.++++ +.++..|.||||.|+.      +++|+++  + ++.+|..|+||||+|+++|+.+++++|+
T Consensus       236 --~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll  303 (327)
T 1sw6_A          236 --QNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALL  303 (327)
T ss_dssp             --GGCCEEEC-----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             --cchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence              0001111123446665 6678888999998885      8888888  3 6778889999999999999999999999


Q ss_pred             cCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          314 RSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       314 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                      ++   +++++.+|.+|+||||+|+++|
T Consensus       304 ~~---Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          304 DY---GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HT---TCCTTCCCTTSCCGGGGTCC--
T ss_pred             Hc---CCCCcccCCCCCCHHHHHHhcC
Confidence            88   4558899999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.9e-33  Score=265.75  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 045393           71 QKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (580)
Q Consensus        71 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~  150 (580)
                      .+|..|.||||+|+..|+.++++.|++.+....         ..++.+|..|.||||+|+..|+.+++++|+++|++++ 
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   72 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-   72 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            467889999999999999999998888775320         1133578889999999999999999999999888776 


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393          151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~  230 (580)
                      ..+..|.||||+|+..|+.+++++|++.+....                              .....+..+..|.||||
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH------------------------------LHSILKATNYNGHTCLH  122 (236)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS------------------------------SSCGGGCCCTTCCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh------------------------------HHHHhhccCCCCCCHHH
Confidence            467788888888888888888888887764210                              01123445556666666


Q ss_pred             HHHHcCChHHHHHHHHhchhcccccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHH
Q 045393          231 YAAASGNVKMAQRLLEESKRLAYKRDC-NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV  309 (580)
Q Consensus       231 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv  309 (580)
                      +|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~  200 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQ  200 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHH
Confidence            666666666666666666665 34443 666666666666666666666666666 566666666666666666666666


Q ss_pred             HHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          310 SFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       310 ~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      ++|+++|... ....++..|.||.+.+
T Consensus       201 ~~Ll~~ga~~-~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          201 QQLGQLTLEN-LQMLPESEDEESYDTE  226 (236)
T ss_dssp             HHHHTTSCGG-GSSCCCCCTTTCCCCC
T ss_pred             HHHHHcchhh-hhcCCccchHHHHhhh
Confidence            6666664421 1234555555555443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=4.4e-33  Score=263.20  Aligned_cols=215  Identities=21%  Similarity=0.300  Sum_probs=164.2

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC---CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCcc
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP---SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT  193 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t  193 (580)
                      ..|.+|.||||+|+..|+.+++++|++.+...   ....+.                                   .|.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------------------------------~g~t   47 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------------------------LQQT   47 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-----------------------------------TCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-----------------------------------CCCC
Confidence            35666777777777777777777776665421   123344                                   4455


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhc-----ccccCCCCCcHHHHHHH
Q 045393          194 LIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL-----AYKRDCNGETPLHLAAE  268 (580)
Q Consensus       194 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~  268 (580)
                      |||.|+..|+.++++.|++.+.. ++.+|..|.||||+|+..|+.+++++|++.+++.     .+..+..|.||||+|+.
T Consensus        48 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           48 PLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             HHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence            55555555555555555554433 5667778888888888888899999998887542     35678889999999999


Q ss_pred             cCcHHHHHHHHHhCCCccccccC-CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNN-SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT  347 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~  347 (580)
                      .|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++   +++++.+|..|.||||+|+..++.+++++
T Consensus       127 ~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          127 HGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHH
Confidence            9999999999999999 888887 999999999999999999999999   45599999999999999999999999999


Q ss_pred             hhcCcccccc--cccccCCCCCHHHHHHH
Q 045393          348 LSRHKSVNIR--AKNHSARSNTALEIAEI  374 (580)
Q Consensus       348 Ll~~~~~d~~--~~n~~~~g~t~l~~a~~  374 (580)
                      |+++ |+++.  .++.  +|.||.+.+..
T Consensus       203 Ll~~-ga~~~~~~~~~--~~~~~~~~~~~  228 (236)
T 1ikn_D          203 LGQL-TLENLQMLPES--EDEESYDTESE  228 (236)
T ss_dssp             HHTT-SCGGGSSCCCC--CTTTCCCCC--
T ss_pred             HHHc-chhhhhcCCcc--chHHHHhhhcc
Confidence            9965 88877  6777  99999887655

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3.2e-31  Score=249.69  Aligned_cols=211  Identities=22%  Similarity=0.216  Sum_probs=172.7

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHhh-CchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393           33 GGNAVLHMAVRFRNQQVIREILRQ-QDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL  111 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (580)
                      .|+||||+|+..|+.+++++|++. |.+         ++.+|..|+||||+|+..|+.+++++|+++|++....      
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~---------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------   66 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE---------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE------   66 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC---------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc------
Confidence            489999999999999999999998 776         8889999999999999999999999999999885321      


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                        ....+|..|.||||+|+..|+.+++++|+++|++++.. +..  +.+.                   ......+. .|
T Consensus        67 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~~-------------------~~~~~~~~-~g  121 (232)
T 2rfa_A           67 --PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR-ATG--SVFH-------------------YRPHNLIY-YG  121 (232)
T ss_dssp             --CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGGS-------------------CCTTCSCC-CC
T ss_pred             --cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc-cCC--ccee-------------------eccccccc-CC
Confidence              12346789999999999999999999999999987642 221  1100                   11222333 68


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHH----HHHHHhchhcc-----cccCCCCCcH
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA----QRLLEESKRLA-----YKRDCNGETP  262 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~~~~~~-----~~~~~~g~tp  262 (580)
                      .||||.|+..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++    ++|++.|++..     +.+|..|.||
T Consensus       122 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp  200 (232)
T 2rfa_A          122 EHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP  200 (232)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence            8888888888888888888887655 788888899999999999988877    88888887653     5678889999


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCC
Q 045393          263 LHLAAENGKLKVLKLLINKYPD  284 (580)
Q Consensus       263 L~~A~~~g~~~~v~~Ll~~~~~  284 (580)
                      ||+|+..|+.+++++|++++++
T Consensus       201 l~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          201 FKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999998866

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.5e-30  Score=239.31  Aligned_cols=192  Identities=20%  Similarity=0.284  Sum_probs=113.2

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHH
Q 045393          120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVV  199 (580)
Q Consensus       120 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~  199 (580)
                      ..+.||||.|+..|+.+.++.|++.+.......+..|.||||+|+..|+.+++++|++++.                   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------------   63 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-------------------   63 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------------------
Confidence            3466677777777777777777666653333455566666666666666666666666552                   


Q ss_pred             HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393          200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI  279 (580)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  279 (580)
                                      + ++..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|+
T Consensus        64 ----------------~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (201)
T 3hra_A           64 ----------------D-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL  126 (201)
T ss_dssp             ----------------C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred             ----------------C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence                            2 34445555566666666666666666664443333455555666666666666666666666


Q ss_pred             HhCCCccccccCCCCCHHHHHHHcCC-----HHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          280 NKYPDAIEIRNNSDRSILHVAAKHGN-----WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      ++++..++.+|..|+||||+|+..++     .+++++|+++|   ++++.+|..|+||||+|+..|+.+++++|++
T Consensus       127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            66632255666666666666666555     56666666653   3356666666666666666666666666654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.5e-30  Score=239.32  Aligned_cols=180  Identities=18%  Similarity=0.266  Sum_probs=167.7

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .+.+|||.|+..|+.+.++.++..++..++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            68899999999999999999999988779999999999999999999999999999999988 77889999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCC-----hhH
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH-----SDV  344 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-----~~~  344 (580)
                      |+.+++++|++++...++.+|..|+||||+|+..|+.+++++|++.+.  .+++.+|..|+||||+|+..++     .++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            999999999977765589999999999999999999999999999851  4589999999999999999998     899


Q ss_pred             HHHhhcCcccccccccccCCCCCHHHHHHHH
Q 045393          345 VFTLSRHKSVNIRAKNHSARSNTALEIAEIT  375 (580)
Q Consensus       345 ~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~  375 (580)
                      +++|+++ |+|++.+|.  .|+|||++|...
T Consensus       161 v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~~  188 (201)
T 3hra_A          161 VKLLMEN-GADQSIKDN--SGRTAMDYANQK  188 (201)
T ss_dssp             HHHHHHT-TCCTTCCCT--TSCCHHHHHHHH
T ss_pred             HHHHHHC-CCCCCccCC--CCCCHHHHHHHc
Confidence            9999976 899999999  999999999873

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.1e-31  Score=256.32  Aligned_cols=220  Identities=19%  Similarity=0.242  Sum_probs=168.9

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCc---ccccCCCCHHHHHHHc---CcHHHHHHHHhcCCCCcCCC
Q 045393          117 MTDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSS---YINKAYQTPLSIAIDA---RLNDIACFIIDKSPESLNTT  186 (580)
Q Consensus       117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~  186 (580)
                      ..|..|.||||+|++.|+.++|+.|++.    +.+...   ..+..|.||||+|+..   |+.+++++|++.+....   
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~---   84 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD---   84 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT---
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc---
Confidence            4788999999999999999999988874    444332   3477899999999976   89999999998874210   


Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCC---------
Q 045393          187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDC---------  257 (580)
Q Consensus       187 ~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~---------  257 (580)
                                         .++.++...   ....|..|.||||+|+..|+.+++++|+++|+++ +.++.         
T Consensus        85 -------------------~~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~  141 (273)
T 2pnn_A           85 -------------------SLKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKG  141 (273)
T ss_dssp             -------------------CHHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSS
T ss_pred             -------------------chhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccccccccccc
Confidence                               011222221   2335678999999999999999999999999887 55554         


Q ss_pred             -----CCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCCHHHHHHHcCC---------HHHHHHHhcCcchhh
Q 045393          258 -----NGETPLHLAAENGKLKVLKLLIN---KYPDAIEIRNNSDRSILHVAAKHGN---------WNIVSFILRSPEMEN  320 (580)
Q Consensus       258 -----~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~  320 (580)
                           .|.||||+|+..|+.+++++|++   +|++ ++.+|..|+||||+|+..|+         .+++++|++++   +
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a  217 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---A  217 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---H
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---h
Confidence                 79999999999999999999999   8888 89999999999999999998         79999999984   4


Q ss_pred             hcc-------cccCCCCcHHHHHHhcCChhHHHHhhcCccc-ccccccccCCCCCHH
Q 045393          321 LIN-------LVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV-NIRAKNHSARSNTAL  369 (580)
Q Consensus       321 ~~n-------~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~-d~~~~n~~~~g~t~l  369 (580)
                      ++|       .+|..|+||||+|+..|+.+++++|+++ |+ |+.....  .+.+|-
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~--~~~~~~  271 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHA--AAHHHH  271 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC---------------
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhh--hhhhcc
Confidence            465       5899999999999999999999999986 55 8887777  666553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.4e-31  Score=253.68  Aligned_cols=236  Identities=17%  Similarity=0.143  Sum_probs=148.5

Q ss_pred             ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcc----cccCCCCcHHHHHHHh---CCHHHHHHHHhcC
Q 045393           27 FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLR----QKNLMDETALHIAARI---GDRAIVSEIMKYL   99 (580)
Q Consensus        27 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~----~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~   99 (580)
                      ....+..|.||||+|+..|+.++|+.|++.+.+.     ...++    ..|..|+||||+|+..   |+.+++++|+++|
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRS-----KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHS-----CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhc-----ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            3457889999999999999999999999865430     00122    4588999999999987   9999999999998


Q ss_pred             cccccCCCcchhhhhhh----ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 045393          100 PAVNQVGPAPVLESLFR----MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFI  175 (580)
Q Consensus       100 ~~~~~~~~~~~~~~~l~----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  175 (580)
                      ++.+.      ....++    ..|..|.||||+|+..|+.+++++|+++|++++. .+..+.                  
T Consensus        81 a~~~~------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~------------------  135 (273)
T 2pnn_A           81 RKTDS------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDF------------------  135 (273)
T ss_dssp             HHTTC------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGG------------------
T ss_pred             ccccc------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccc------------------
Confidence            76431      011122    2567899999999999999999999999998764 333220                  


Q ss_pred             HhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHh---hCCccccccCCCCChHHHHHHHcCC---------hHHHHH
Q 045393          176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG---TNKELIDRLDWHQRNPLHYAAASGN---------VKMAQR  243 (580)
Q Consensus       176 l~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~g~---------~~~v~~  243 (580)
                      .  ........+. .|.||||.|+..|+.+++++|++   .+. +++.+|..|+||||+|+..|+         .+++++
T Consensus       136 ~--~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~  211 (273)
T 2pnn_A          136 F--KKTKGRPGFY-FGELPLSLAACTNQLAIVKFLLQNSWQPA-DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE  211 (273)
T ss_dssp             G--SSCSSSCCCC-SCBSHHHHHHHTTCHHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             c--cccccccccc-CCCCHHHHHHHcCCHHHHHHHHhcccCCC-CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence            0  0001111122 45666666666666666666666   333 366666666677776666665         566667


Q ss_pred             HHHhchhcc------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH
Q 045393          244 LLEESKRLA------YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI  296 (580)
Q Consensus       244 Ll~~~~~~~------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  296 (580)
                      |+++|+++.      +.+|..|.||||+|+..|+.+++++|+++|+.........+.+|
T Consensus       212 Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            777666653      23566666666666666666666666666664355544444444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=9.5e-31  Score=250.39  Aligned_cols=199  Identities=22%  Similarity=0.244  Sum_probs=172.0

Q ss_pred             CCccHHHHHHHcCCHH----HHHHHHhhCCccccc----cCCCCChHHHHHHHc---CChHHHHHHHHhchhcccc----
Q 045393          190 DELTLIHFVVMRQNYD----IMVKILGTNKELIDR----LDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYK----  254 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~----  254 (580)
                      .|.||||.|+..|+.+    +++++++.+.+ ++.    .|..|+||||+|+..   |+.+++++|++.|++....    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3678999999999887    44555556655 666    799999999999999   9999999999999876322    


Q ss_pred             ------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-------------CCCHHHHHHHcCCHHHHHHHhcC
Q 045393          255 ------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-------------DRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       255 ------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                            +|..|.||||+|+..|+.+++++|+++|++ ++.+|..             |+||||+|+..|+.+++++|++.
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  246799999999999999999999999999 7888876             99999999999999999999993


Q ss_pred             cchhhhcccccCCCCcHHHHHHh--cCChh-------HHHHhhcCccccc-------ccccccCCCCCHHHHHHHHhhCC
Q 045393          316 PEMENLINLVDRNGNTPLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNHSARSNTALEIAEITRANG  379 (580)
Q Consensus       316 ~~~~~~~n~~d~~G~T~Lh~A~~--~~~~~-------~~~~Ll~~~~~d~-------~~~n~~~~g~t~l~~a~~~~~~~  379 (580)
                      +..++++|.+|.+|+||||+|+.  .++.+       ++++|+++ |+++       +.+|.  .|+|||++|..     
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~--~g~tpL~~A~~-----  230 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNH--QGLTPLKLAAK-----  230 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCT--TSCCHHHHHHH-----
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCC--CCCCHHHHHHH-----
Confidence            22255699999999999999999  77887       99999975 9999       99999  99999999998     


Q ss_pred             hhhHHHHHHHHHHHhhhhhhc
Q 045393          380 KEIQKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       380 ~~~~~~~~~~~L~~~ga~~~~  400 (580)
                        .+..++++.|+++|++..+
T Consensus       231 --~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          231 --EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             --TTCHHHHHHHHHHHHHHHH
T ss_pred             --hCCHHHHHHHHhCCCCCCC
Confidence              5678899999999988654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.9e-30  Score=230.07  Aligned_cols=159  Identities=30%  Similarity=0.446  Sum_probs=143.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393          193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL  272 (580)
Q Consensus       193 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  272 (580)
                      +.|+.|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+..++.++++.|++.|+++ +.+|..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            468899999999999999998866 8999999999999999999999999999999988 77899999999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCc
Q 045393          273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK  352 (580)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~  352 (580)
                      +++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|++.+   ++++.+|.+|+||||+|+..|+.+++++|+++ 
T Consensus        84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-  158 (169)
T 4gpm_A           84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-  158 (169)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence            999999999999 8999999999999999999999999999984   55999999999999999999999999999965 


Q ss_pred             cccccc
Q 045393          353 SVNIRA  358 (580)
Q Consensus       353 ~~d~~~  358 (580)
                      |++++-
T Consensus       159 GA~ie~  164 (169)
T 4gpm_A          159 GGWLEH  164 (169)
T ss_dssp             ------
T ss_pred             CCCcCC
Confidence            888754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.2e-30  Score=229.58  Aligned_cols=156  Identities=24%  Similarity=0.369  Sum_probs=142.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.||+.|+.++++.|++.|...+..|.+|+||||+|+..|+.+++++|++.|++         ++.+|..|+||||+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---------~~~~d~~g~TpLh~   76 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---------VNAKDSDGRTPLHH   76 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---------hhhhccCCCCHHHH
Confidence            579999999999999999999988888999999999999999999999999999998         88899999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      |+..|+.+++++|+++|++++             .+|.+|+||||+|++.|+.+++++|+++|++++ ..|..|.|||++
T Consensus        77 A~~~g~~~~v~~Ll~~gadvn-------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~  142 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADVN-------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDL  142 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHH
Confidence            999999999999999998876             478899999999999999999999999999887 578899999999


Q ss_pred             HHHcCcHHHHHHHHhcCCC
Q 045393          163 AIDARLNDIACFIIDKSPE  181 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~~  181 (580)
                      |+..|+.+++++|+++|+.
T Consensus       143 A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          143 AREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHTTCHHHHHHHHTC---
T ss_pred             HHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999863

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.7e-30  Score=245.58  Aligned_cols=216  Identities=17%  Similarity=0.204  Sum_probs=165.8

Q ss_pred             CCchhhHHHhcCCHH----HHHHHHhhCchhHHhhhhhhccc----ccCCCCcHHHHHHHh---CCHHHHHHHHhcCccc
Q 045393           34 GNAVLHMAVRFRNQQ----VIREILRQQDFIALRLHYSLLRQ----KNLMDETALHIAARI---GDRAIVSEIMKYLPAV  102 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~----~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~  102 (580)
                      |+||||+|+..|+.+    ++++|++.|.+         ++.    +|..|+||||+|+..   |+.+++++|++.|+++
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~---------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   72 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY---------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS   72 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC---------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC---------cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence            789999999999997    66777778887         676    899999999999999   9999999999999886


Q ss_pred             ccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 045393          103 NQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES  182 (580)
Q Consensus       103 ~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  182 (580)
                      +....  .+......+|..|.||||+|+..|+.+++++|+++|++++. .+..+..+                     ..
T Consensus        73 ~~~~~--~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~---------------------~~  128 (256)
T 2etb_A           73 GNPKP--LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQ---------------------KH  128 (256)
T ss_dssp             TCSSC--GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGS---------------------CC
T ss_pred             cchhh--hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cccccccc---------------------cc
Confidence            53221  01111223567899999999999999999999999998764 34332110                     11


Q ss_pred             cCCCCCCCCccHHHHHHHcCCHHHHHHHHh---hCCccccccCCCCChHHHHHHH--cCChH-------HHHHHHHhchh
Q 045393          183 LNTTRLPDELTLIHFVVMRQNYDIMVKILG---TNKELIDRLDWHQRNPLHYAAA--SGNVK-------MAQRLLEESKR  250 (580)
Q Consensus       183 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~L~~A~~--~g~~~-------~v~~Ll~~~~~  250 (580)
                      ....+. .|.||||.|+..|+.++++.|++   .+. +++.+|..|+||||+|+.  .++.+       ++++|+++|++
T Consensus       129 ~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga-~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~  206 (256)
T 2etb_A          129 QGTCFY-FGELPLSLAACTKQWDVVTYLLENPHQPA-SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR  206 (256)
T ss_dssp             SSSCCC-SCSSHHHHHHHTTCHHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-CCCCHHHHHHHcCCHHHHHHHHhccccCC-CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence            111111 47777777777777777777777   443 377788888888888888  67777       88999998887


Q ss_pred             cc------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 045393          251 LA------YKRDCNGETPLHLAAENGKLKVLKLLINKYPD  284 (580)
Q Consensus       251 ~~------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  284 (580)
                      +.      +.+|..|.||||+|+..|+.+++++|++++++
T Consensus       207 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            73      56788899999999999999999999988776

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.1e-29  Score=241.67  Aligned_cols=200  Identities=19%  Similarity=0.155  Sum_probs=167.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHh----hCCccccccC----CCCChHHHHHH---HcCChHHHHHHHHhchhcc------
Q 045393          190 DELTLIHFVVMRQNYDIMVKILG----TNKELIDRLD----WHQRNPLHYAA---ASGNVKMAQRLLEESKRLA------  252 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~d----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~------  252 (580)
                      .+.++||.|+..|+.+.++.+++    .+.. ++..+    ..|.||||+|+   +.|+.+++++|++.|++..      
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            67788888888888886555554    5544 44443    77999999999   7799999999999986531      


Q ss_pred             ----cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc--------------CCCCCHHHHHHHcCCHHHHHHHhc
Q 045393          253 ----YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN--------------NSDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       253 ----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                          ...|..|.||||+|+..|+.+++++|+++|++ ++.+|              ..|+||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                23344899999999999999999999999999 78888              689999999999999999999999


Q ss_pred             CcchhhhcccccCCCCcHHHHHHhcCC---------hhHHHHhhcCccccc-------ccccccCCCCCHHHHHHHHhhC
Q 045393          315 SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNHSARSNTALEIAEITRAN  378 (580)
Q Consensus       315 ~~~~~~~~n~~d~~G~T~Lh~A~~~~~---------~~~~~~Ll~~~~~d~-------~~~n~~~~g~t~l~~a~~~~~~  378 (580)
                      .+..+.++|.+|..|+||||+|+..++         .+++++|+++ |+++       +.+|.  .|+|||++|..    
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~--~g~tpL~~A~~----  234 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNN--DGLSPLMMAAK----  234 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCCHHHHHHH----
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccC--CCCCHHHHHHH----
Confidence            322256699999999999999998887         6899999965 8998       77999  99999999998    


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhcc
Q 045393          379 GKEIQKHLTLKALKTAYAKRALS  401 (580)
Q Consensus       379 ~~~~~~~~~~~~L~~~ga~~~~~  401 (580)
                         .++.++++.|+++|++..++
T Consensus       235 ---~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          235 ---TGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHC-
T ss_pred             ---cCCHHHHHHHHHhCCCcccc
Confidence               56789999999999987654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.2e-29  Score=222.35  Aligned_cols=170  Identities=21%  Similarity=0.227  Sum_probs=151.2

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcC
Q 045393          191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG  270 (580)
Q Consensus       191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  270 (580)
                      +.+|||.|+..|+.+.++.+++.++..++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4578999999999999999999998888999999999999999999999999999999887 777889999999999999


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          271 KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      +.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++   ++++.+|..|.||||+|+..++.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999999 8999999999999999999999999999984   5589999999999999999999999999996


Q ss_pred             CcccccccccccCCCCCH
Q 045393          351 HKSVNIRAKNHSARSNTA  368 (580)
Q Consensus       351 ~~~~d~~~~n~~~~g~t~  368 (580)
                      + ++++..+|.  .|.||
T Consensus       157 ~-~~~~~~~~~--~~~~p  171 (172)
T 3v30_A          157 H-ILKLFQSNL--VPADP  171 (172)
T ss_dssp             H-HHHHSCC---------
T ss_pred             H-HHHHhcccC--CCCCC
Confidence            5 889988888  88887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.4e-29  Score=239.40  Aligned_cols=213  Identities=21%  Similarity=0.246  Sum_probs=155.4

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHh----cCcccccCCCcchhhhhhhccCCCCCcHHHHHH---HcCcHHHHHHHHHcC
Q 045393           73 NLMDETALHIAARIGDRAIVSEIMK----YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV---TNQHKRVIRILVEKD  145 (580)
Q Consensus        73 ~~~g~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~~  145 (580)
                      +..++|+||.|++.|+.+.++.|++    .+.+++...         ...|..|.||||+|+   +.|+.+++++|++.|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g   72 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIA   72 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence            4678999999999999996555554    887765321         124578999999999   779999999999988


Q ss_pred             CCCC----------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC
Q 045393          146 SVPS----------SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK  215 (580)
Q Consensus       146 ~~~~----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~  215 (580)
                      ++..          ...|..|.||||+|+..|+.+++++|++++.+ ++..+. .+.                    ..+
T Consensus        73 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~~~--------------------~~~  130 (260)
T 3jxi_A           73 EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQAR-GRF--------------------FQP  130 (260)
T ss_dssp             HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCE-ECC--------------------CSS
T ss_pred             ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCcccc-ccc--------------------cCc
Confidence            6432          12344677777777777777777777776632 222221 000                    000


Q ss_pred             ccccccCCCCChHHHHHHHcCChHHHHHHHH---hchhcccccCCCCCcHHHHHHHcCc---------HHHHHHHHHhCC
Q 045393          216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---ESKRLAYKRDCNGETPLHLAAENGK---------LKVLKLLINKYP  283 (580)
Q Consensus       216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~  283 (580)
                      ......+..|.||||+|+..|+.+++++|++   .|+++ +.+|..|.||||+|+..|+         .+++++|+++|+
T Consensus       131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  209 (260)
T 3jxi_A          131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA  209 (260)
T ss_dssp             SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence            1122233678888888888888888888888   77777 6778888888888887777         688888888887


Q ss_pred             Ccc-------ccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393          284 DAI-------EIRNNSDRSILHVAAKHGNWNIVSFILRSPEM  318 (580)
Q Consensus       284 ~~~-------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  318 (580)
                      + +       +.+|..|+||||+|+++|+.+++++|++++..
T Consensus       210 ~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          210 K-LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             H-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             c-cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            7 4       67888899999999999999999999888554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=9.9e-31  Score=261.52  Aligned_cols=298  Identities=13%  Similarity=0.095  Sum_probs=204.3

Q ss_pred             HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHh-cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCC
Q 045393           10 RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVR-FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD   88 (580)
Q Consensus        10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~   88 (580)
                      ..+..+.+..++.......  ...+.+++++|.. .++.+++++++++|.+                ++||||.|++.|+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~----------------~~T~Lh~Aa~~G~  104 (376)
T 2aja_A           43 TLSYKEAIHIFLPGTKNME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK----------------SEVICFVAAITGC  104 (376)
T ss_dssp             HSCHHHHHHHCCCCSSHHH--HHHHHHHHHHHHTTTTCTTHHHHHHHHTCC----------------HHHHHHHHHHHCC
T ss_pred             hccHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhcCCCHHHHHHHHHcCCC----------------cCCHHHHHHHcCC
Confidence            3444555555554332111  1123567788776 5789999999988765                3599999999999


Q ss_pred             HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC--cccccCCCCHHHHHHHc
Q 045393           89 RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDA  166 (580)
Q Consensus        89 ~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~  166 (580)
                      .+++++|+++|+....          ....|..|.||||+|+++|+.++|++|+++|++..  ...+.+ .||||+|+..
T Consensus       105 ~e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~  173 (376)
T 2aja_A          105 SSALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN  173 (376)
T ss_dssp             HHHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC
Confidence            9999999999873211          11245567899999999999999999999997532  122333 8999999999


Q ss_pred             CcHHHHHHHHhcCCCCcC-CCCCCCCccHHHHHH-HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHH
Q 045393          167 RLNDIACFIIDKSPESLN-TTRLPDELTLIHFVV-MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL  244 (580)
Q Consensus       167 ~~~~~v~~Ll~~~~~~~~-~~~~~~~~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L  244 (580)
                      |+.+++++|++++++... ..+. .|.||||.|+ ..|+.+++++|++.+.        .|.||||.|+..|+.+++++|
T Consensus       174 G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          174 GHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             TCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHH
T ss_pred             CCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHH
Confidence            999999999999854221 1333 6889999999 9999999999998542        278999999999999999999


Q ss_pred             HHhchhcccccCCCCCcHHHHHHHcCcHHH------------HHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHH
Q 045393          245 LEESKRLAYKRDCNGETPLHLAAENGKLKV------------LKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI  312 (580)
Q Consensus       245 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~------------v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  312 (580)
                      +++|++.. ..+    ++++.|+.+|+.++            ++.|+.++..                   +..+.+++|
T Consensus       245 ~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~L  300 (376)
T 2aja_A          245 ARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFL  300 (376)
T ss_dssp             HHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHH
T ss_pred             HhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHH
Confidence            99988763 222    36777887777663            3445544321                   235667777


Q ss_pred             hcCcchhhhc--ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHH
Q 045393          313 LRSPEMENLI--NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEIT  375 (580)
Q Consensus       313 l~~~~~~~~~--n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~  375 (580)
                      ++.+......  ...++.++||||+|+..|+.+++++|++.+    ..++.  .|+|++++|+..
T Consensus       301 l~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~--~~~~~~~~~~~~  359 (376)
T 2aja_A          301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLAL--TKANNYYINETG  359 (376)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHS--CC----------
T ss_pred             HhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHH--HHHhcccccccc
Confidence            7654332222  223456788999999999999999998753    55666  888888888763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=238.29  Aligned_cols=189  Identities=20%  Similarity=0.233  Sum_probs=115.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCc-cccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH----
Q 045393          193 TLIHFVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA----  267 (580)
Q Consensus       193 t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~----  267 (580)
                      +++|.|+..++.+.++.++..... .++..|.+|+||||+|+..|+.+++++|++.|+...+..+..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            344555555555555555544322 245556666666666666666666666666665333555666666666666    


Q ss_pred             -HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          268 -ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       268 -~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                       ..++.+++++|++.+.+ .+..|..|+||||+|+.+|+.+++++|++.   ++++|.+|.+|+||||+|+..|+.++++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~---gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLAC---EADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence             44666666666666655 555566666666666666666666666666   3336666666666666666666666666


Q ss_pred             HhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHh
Q 045393          347 TLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTA  394 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~  394 (580)
                      +|++..|+|++.+|.  .|+|||++|..       .++.++++.|++.
T Consensus       234 ~Ll~~~gad~~~~d~--~g~TpL~~A~~-------~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          234 LLLAVPSCDISLTDR--DGSTALMVALD-------AGQSEIASMLYSR  272 (276)
T ss_dssp             HHHTSTTCCTTCCCT--TSCCHHHHHHH-------HTCHHHHHHHHHH
T ss_pred             HHHhcCCCCCcCcCC--CCCCHHHHHHH-------cCCHHHHHHHHhc
Confidence            666545666666666  66666666665       3445555555544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=7.2e-29  Score=239.63  Aligned_cols=190  Identities=20%  Similarity=0.296  Sum_probs=146.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCC-CcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHH----
Q 045393          159 PLSIAIDARLNDIACFIIDKSPE-SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA----  233 (580)
Q Consensus       159 pL~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~----  233 (580)
                      ++|.|+..++.+.++.+++.... ..+..+. .|.||||.|+..|+.++++.|++.+...++..+..|.||||+|+    
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIADS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            33444444444444444333211 1222333 66666666666666666666666666457777888888888888    


Q ss_pred             -HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHH
Q 045393          234 -ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI  312 (580)
Q Consensus       234 -~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  312 (580)
                       ..++.++++.|++.|... ...+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             567889999999999766 66788899999999999999999999999999 899999999999999999999999999


Q ss_pred             hc-CcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCccc
Q 045393          313 LR-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV  354 (580)
Q Consensus       313 l~-~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~  354 (580)
                      ++ .   +++++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus       236 l~~~---gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          236 LAVP---SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HTST---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HhcC---CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            98 5   455899999999999999999999999999987554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.7e-30  Score=259.85  Aligned_cols=219  Identities=10%  Similarity=0.071  Sum_probs=167.5

Q ss_pred             cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH-hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCC
Q 045393           44 FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR-IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEG  122 (580)
Q Consensus        44 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g  122 (580)
                      .+..+.+..++....+         .+  ...+.+++++|.. .++.+++++++++|.+                    +
T Consensus        44 ~~~~~~~~~~~~~~~~---------~~--~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~--------------------~   92 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKN---------ME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK--------------------S   92 (376)
T ss_dssp             SCHHHHHHHCCCCSSH---------HH--HHHHHHHHHHHHTTTTCTTHHHHHHHHTCC--------------------H
T ss_pred             ccHHHHHHHHhcCCCC---------HH--HHHHHHHHHHHHhcCCCHHHHHHHHHcCCC--------------------c
Confidence            4445666666655444         11  1134578888877 5788999999887644                    4


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCC--cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC--cCCCCCCCCccHHHHH
Q 045393          123 NTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDARLNDIACFIIDKSPES--LNTTRLPDELTLIHFV  198 (580)
Q Consensus       123 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~~t~L~~A  198 (580)
                      .||||+|++.|+.+++++|++.|+...  ...+..|.||||+|+..|+.+++++|++++++.  .+...  .+.||||.|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~--~~~TpLh~A  170 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA--ENYHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH--HHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC--CCCCHHHHH
Confidence            599999999999999999999987321  123556788999999999999999999998531  11111  228999999


Q ss_pred             HHcCCHHHHHHHHhhCCccccc--cCCCCChHHHHHH-HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393          199 VMRQNYDIMVKILGTNKELIDR--LDWHQRNPLHYAA-ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL  275 (580)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~--~d~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  275 (580)
                      +..|+.+++++|++.+++ ++.  .|..|.||||+|+ ..|+.+++++|++.|+.        |.||||.|+.+|+.+++
T Consensus       171 a~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHH
T ss_pred             HHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHH
Confidence            999999999999998876 454  7778899999999 99999999999987642        67999999999999999


Q ss_pred             HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHH
Q 045393          276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV  309 (580)
Q Consensus       276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv  309 (580)
                      ++|++++++ ++..|    ++++.|+.+|+.+++
T Consensus       242 ~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          242 PFIARHVNR-LKEMH----DAFKLSNPDGVFDLV  270 (376)
T ss_dssp             HHHHHHHHH-HHHHH----TTTTTTSSSSCCCCS
T ss_pred             HHHHhcCcc-ccccc----HHHHHHHHCCChhhh
Confidence            999999887 55444    478888888887754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5.7e-28  Score=220.24  Aligned_cols=164  Identities=24%  Similarity=0.291  Sum_probs=139.5

Q ss_pred             cccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH
Q 045393          217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI  296 (580)
Q Consensus       217 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  296 (580)
                      ..+.+|..|+||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            35677888899999999999999999999888776 66778889999999999999999999998888 78888889999


Q ss_pred             HHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHh
Q 045393          297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR  376 (580)
Q Consensus       297 Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~  376 (580)
                      ||+|+..|+.+++++|+++   +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  .|.||+++|..  
T Consensus       105 L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~--  176 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDL--TGLTAEASARI--  176 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCT--TSCBHHHHHHH--
T ss_pred             HHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH--
Confidence            9999999999999999888   445888888899999999999999999988865 888888888  89999998887  


Q ss_pred             hCChhhHHHHHHHHHHHhh
Q 045393          377 ANGKEIQKHLTLKALKTAY  395 (580)
Q Consensus       377 ~~~~~~~~~~~~~~L~~~g  395 (580)
                           .+..+++++|++.|
T Consensus       177 -----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 -----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             -----TTCHHHHHHHHHHH
T ss_pred             -----hCcHHHHHHHHhcc
Confidence                 45667888887765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.6e-27  Score=209.47  Aligned_cols=156  Identities=22%  Similarity=0.265  Sum_probs=131.5

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      .++|+.|++.|+.+++++|++.+...+..+..|+||||+|+. |+.+++++|++.|.+         ++.+|..|.||||
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~   75 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---------PDLKDRTGFAVIH   75 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---------TTCCCTTSCCHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---------CCCCCCCCCCHHH
Confidence            367888888888888888888876666778888888888888 888888888888887         7778888888888


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|++.|+.+++++|+++|++.....+..|.|||+
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  142 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence            8888888888888888887765             467788888888888888888888888888765577888888888


Q ss_pred             HHHHcCcHHHHHHHHhcCC
Q 045393          162 IAIDARLNDIACFIIDKSP  180 (580)
Q Consensus       162 ~A~~~~~~~~v~~Ll~~~~  180 (580)
                      +|+..|+.+++++|+++++
T Consensus       143 ~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          143 LARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHcCCHHHHHHHHHhCC
Confidence            8888888888888888774

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.7e-27  Score=217.09  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=140.1

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .|.||||.|+..|+.++++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc
Confidence            778888888888888888888887654 7778888999999999999999999999999887 67788999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++   +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus       112 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          112 GYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            999999999999998 889999999999999999999999999998   4458999999999999999999999999998


Q ss_pred             cCc
Q 045393          350 RHK  352 (580)
Q Consensus       350 ~~~  352 (580)
                      +.+
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.4e-27  Score=210.91  Aligned_cols=158  Identities=23%  Similarity=0.321  Sum_probs=82.2

Q ss_pred             CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcC
Q 045393          225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG  304 (580)
Q Consensus       225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  304 (580)
                      |.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcC
Confidence            445555555555555555555555443 44455555555555555555555555555554 4555555555555555555


Q ss_pred             CHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHH
Q 045393          305 NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQK  384 (580)
Q Consensus       305 ~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~  384 (580)
                      +.+++++|++.   +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  .|+||+++|..       .+.
T Consensus        81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~~  147 (167)
T 3v31_A           81 YTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETD--SGYNSMDLAVA-------LGY  147 (167)
T ss_dssp             CHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------HTC
T ss_pred             CHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cCc
Confidence            55555555554   223455555555555555555555555555542 555555555  55555555554       233


Q ss_pred             HHHHHHHHHhhhh
Q 045393          385 HLTLKALKTAYAK  397 (580)
Q Consensus       385 ~~~~~~L~~~ga~  397 (580)
                      .++++.|++++++
T Consensus       148 ~~~~~~L~~~~~~  160 (167)
T 3v31_A          148 RSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555554443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=5.7e-27  Score=209.54  Aligned_cols=168  Identities=16%  Similarity=0.141  Sum_probs=122.4

Q ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393          158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (580)
Q Consensus       158 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~  237 (580)
                      +|||.|+..|+.++++.|++.++...+..+. .|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGY   81 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCCC
Confidence            4555555555555555555554433333333 556666666666666666666655544 66777888999999999999


Q ss_pred             hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393          238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE  317 (580)
Q Consensus       238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  317 (580)
                      .+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++++ 
T Consensus        82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~-  158 (172)
T 3v30_A           82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHI-  158 (172)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH-
Confidence            99999999998887 67788899999999999999999999999988 8889999999999999999999999999884 


Q ss_pred             hhhhcccccCCCCcH
Q 045393          318 MENLINLVDRNGNTP  332 (580)
Q Consensus       318 ~~~~~n~~d~~G~T~  332 (580)
                        ..+..++..|.||
T Consensus       159 --~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 --LKLFQSNLVPADP  171 (172)
T ss_dssp             --HHHSCC-------
T ss_pred             --HHHhcccCCCCCC
Confidence              4477777888776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.2e-27  Score=208.71  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=141.4

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .|.||||.|+..|+.++++.|++.+.. ++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            578899999999999999999988755 8888999999999999999999999999998887 67788999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++   .+++.+|..|.||||+|+..|+.+++++|+
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG---ADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999998 8889999999999999999999999999984   458899999999999999999999999998


Q ss_pred             cC
Q 045393          350 RH  351 (580)
Q Consensus       350 ~~  351 (580)
                      ++
T Consensus       156 ~~  157 (167)
T 3v31_A          156 SH  157 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.6e-27  Score=209.55  Aligned_cols=159  Identities=23%  Similarity=0.314  Sum_probs=138.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      ...+|||.|+..|+.++++.|++.+.. ++..+..|.||||+|+. |+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            466889999999999999999987765 78888999999999988 9999999999998887 67788999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|++.|+.+++++|++++..  .++.+|..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999988 888999999999999999999999999988543  26888999999999999999999999999


Q ss_pred             cCcccc
Q 045393          350 RHKSVN  355 (580)
Q Consensus       350 ~~~~~d  355 (580)
                      ++ |+|
T Consensus       158 ~~-GAd  162 (162)
T 1ihb_A          158 AN-GAG  162 (162)
T ss_dssp             HT-C--
T ss_pred             Hh-CCC
Confidence            75 554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.5e-26  Score=206.13  Aligned_cols=151  Identities=25%  Similarity=0.341  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA   83 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A   83 (580)
                      +|+.|++.|+.+++++|++.+...+..+..|.||||+|+..|+.+++++|+++|.+         ++.+|..|.||||+|
T Consensus        17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---------VNAVDHAGMTPLRLA   87 (169)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCCHHHHH
Confidence            44455555555555555554443334444455555555555555555555554444         444444455555555


Q ss_pred             HHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH
Q 045393           84 ARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA  163 (580)
Q Consensus        84 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  163 (580)
                      +..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A  153 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVN-------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDIS  153 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHH
Confidence            55555555555555444433             234445555555555555555555555544443 2344445555555


Q ss_pred             HHcCcHHHHHHHHh
Q 045393          164 IDARLNDIACFIID  177 (580)
Q Consensus       164 ~~~~~~~~v~~Ll~  177 (580)
                      +..|+.+++++|++
T Consensus       154 ~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          154 IDNGNEDLAEILQK  167 (169)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHH
Confidence            55555555554444

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.7e-27  Score=213.10  Aligned_cols=166  Identities=20%  Similarity=0.260  Sum_probs=151.4

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .+.++|+.|+..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            67788999999999999999999888778999999999999999999999999999999887 67788999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++   ++++.+|..|.||||+|+..++.+++++|+
T Consensus        83 ~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           83 GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999 8999999999999999999999999999984   458999999999999999999999999999


Q ss_pred             cCcccccccccc
Q 045393          350 RHKSVNIRAKNH  361 (580)
Q Consensus       350 ~~~~~d~~~~n~  361 (580)
                      +. |++++..+.
T Consensus       159 ~~-g~~~~~~~~  169 (179)
T 3f6q_A          159 KM-GQNLNRIPY  169 (179)
T ss_dssp             HT-TCCCSCBCC
T ss_pred             Hh-hcCcccCCc
Confidence            75 889887765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1e-26  Score=207.12  Aligned_cols=156  Identities=24%  Similarity=0.338  Sum_probs=143.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .+.++++.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            677899999999999999999998765 7888999999999999999999999999999887 67788999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++   .+++.+|..|.||||+|+..|+.+++++|+
T Consensus        91 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           91 GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999 8899999999999999999999999999984   458999999999999999999999999998


Q ss_pred             cC
Q 045393          350 RH  351 (580)
Q Consensus       350 ~~  351 (580)
                      +.
T Consensus       167 ~~  168 (169)
T 2y1l_E          167 KL  168 (169)
T ss_dssp             TC
T ss_pred             Hc
Confidence            64

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.4e-29  Score=236.99  Aligned_cols=207  Identities=17%  Similarity=0.121  Sum_probs=151.0

Q ss_pred             HHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHH
Q 045393           92 VSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI  171 (580)
Q Consensus        92 v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~  171 (580)
                      ++.|+++|++++...          ..+.+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.++
T Consensus         1 v~~ll~~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~   69 (229)
T 2vge_A            1 MRSVLRKAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSI   69 (229)
T ss_dssp             ---------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred             CeehhccCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence            356677776654321          245567778888888888888888888877665 356666666666666666666


Q ss_pred             HHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhc
Q 045393          172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL  251 (580)
Q Consensus       172 v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  251 (580)
                      +++|++.+                                   .+ ++..|..|+||||+|+..|+.+++++|++.|+++
T Consensus        70 v~~Ll~~g-----------------------------------a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           70 VDFLITAG-----------------------------------AN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             HHHHHHTT-----------------------------------CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHCC-----------------------------------CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            66666554                                   22 5666778899999999999999999999999888


Q ss_pred             ccccCCCCCcHHHHH--HHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCC
Q 045393          252 AYKRDCNGETPLHLA--AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG  329 (580)
Q Consensus       252 ~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G  329 (580)
                      ....+..|.||||+|  +..|+.+++++|+++|++ ++.+|..|.|+++.++..+..   ++|++.+. ..+++.+|.+|
T Consensus       114 ~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga-~~~~~~~d~~G  188 (229)
T 2vge_A          114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGE-SVTVLRRDGPE  188 (229)
T ss_dssp             TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTC-EEEEEESSCTT
T ss_pred             ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCccccc-cccccccCCCc
Confidence            444446899999999  899999999999999998 888899999999865554433   56777643 23478899999


Q ss_pred             CcHHHHHHhcCChhHHHHhhc
Q 045393          330 NTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       330 ~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      +||||+|+..|+.++++.++-
T Consensus       189 ~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          189 ETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             CSSEEEEEETTEEEEEEGGGE
T ss_pred             ccHHHHHHHcCCcceeehhhh
Confidence            999999999999999986543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1e-26  Score=204.29  Aligned_cols=154  Identities=25%  Similarity=0.328  Sum_probs=142.1

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcC
Q 045393          191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG  270 (580)
Q Consensus       191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  270 (580)
                      +.++||.|+..|+.++++.|++..+..++..+..|.||||+ +..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            46899999999999999999988555688899999999999 9999999999999999887 778899999999999999


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          271 KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       271 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      +.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++.    .+++.+|.+|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999998 899999999999999999999999999987    3489999999999999999999999999986


Q ss_pred             C
Q 045393          351 H  351 (580)
Q Consensus       351 ~  351 (580)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4e-26  Score=199.73  Aligned_cols=150  Identities=27%  Similarity=0.359  Sum_probs=126.8

Q ss_pred             CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      .++|+.|++.|+.+++++|++.+.... .+..|.||||+|+..|+.+++++|++.|.+         ++.+|..|.||||
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~   72 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---------RDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------TTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCCCCCCCCCHHH
Confidence            367888999999999999988876544 577888999999999999999999988887         7788888889999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||+
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~  138 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence            9999999999999998888765             467888899999999889999999998888776 46788888888


Q ss_pred             HHHHcCcHHHHHHH
Q 045393          162 IAIDARLNDIACFI  175 (580)
Q Consensus       162 ~A~~~~~~~~v~~L  175 (580)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=9.9e-27  Score=209.41  Aligned_cols=164  Identities=24%  Similarity=0.296  Sum_probs=149.4

Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      .++.++||.|+..|+.+++++|++.+....+.++..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            35789999999999999999999997666688899999999999999999999999999999 89999999999999999


Q ss_pred             cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhh
Q 045393          303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEI  382 (580)
Q Consensus       303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~  382 (580)
                      .|+.+++++|++++   .++|.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|+||+++|..       .
T Consensus        82 ~~~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~  148 (179)
T 3f6q_A           82 HGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK--YGEMPVDKAKA-------P  148 (179)
T ss_dssp             TTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCT--TSCCGGGGSCH-------H
T ss_pred             cCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhcc--CCCCcHHHHHH-------H
Confidence            99999999999994   55999999999999999999999999999976 999999999  99999999987       5


Q ss_pred             HHHHHHHHHHHhhhhhhc
Q 045393          383 QKHLTLKALKTAYAKRAL  400 (580)
Q Consensus       383 ~~~~~~~~L~~~ga~~~~  400 (580)
                      .+.++.+.|++.|++...
T Consensus       149 ~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          149 LRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHHHHhhcCccc
Confidence            677899999999988643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-26  Score=201.56  Aligned_cols=150  Identities=19%  Similarity=0.288  Sum_probs=123.5

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK  271 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  271 (580)
                      .++|+.|+..|+.++++.|++.+.. .+ .+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            4678888888888888888877764 33 4777888888888888888888888888776 6677788888888888888


Q ss_pred             HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      .+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++   .+++.+|..|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            8888888888888 7888888888888888888888888888884   44788888888888888888888888776

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.6e-27  Score=210.18  Aligned_cols=156  Identities=23%  Similarity=0.307  Sum_probs=105.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .+.++||.|+..|+.++++.|++..+...+..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            55667777777777777777776665556666666667777777777777777777766665 55566677777777777


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      |+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++   .+++.+|.+|+||||+|.. ++.+++++|+
T Consensus        86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            777777777776666 6666666777777777777777777777663   3366666777777776554 6666666666


Q ss_pred             cC
Q 045393          350 RH  351 (580)
Q Consensus       350 ~~  351 (580)
                      ++
T Consensus       161 ~~  162 (165)
T 3twr_A          161 GD  162 (165)
T ss_dssp             TC
T ss_pred             hc
Confidence            43

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=9.6e-27  Score=206.51  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=116.3

Q ss_pred             cccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHH
Q 045393          152 INKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY  231 (580)
Q Consensus       152 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~  231 (580)
                      .+..+.+||+.|+..|+.++++.|++..+......+. .|.||||.|+..++.+++++|++.+.+ ++..|..|.||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHH
Confidence            3566677777777777777777777766555544444 677777777777777777777777655 67777777777777


Q ss_pred             HHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHH
Q 045393          232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF  311 (580)
Q Consensus       232 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~  311 (580)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHH
Confidence            77777777777777777776 56677777777777777777777777777777 67777777777777655 77777777


Q ss_pred             HhcCc
Q 045393          312 ILRSP  316 (580)
Q Consensus       312 Ll~~~  316 (580)
                      |++.|
T Consensus       159 L~~~g  163 (165)
T 3twr_A          159 LRGDA  163 (165)
T ss_dssp             HHTC-
T ss_pred             Hhhcc
Confidence            77664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.2e-29  Score=235.78  Aligned_cols=142  Identities=19%  Similarity=0.139  Sum_probs=107.3

Q ss_pred             HHHHhhhcCcc---cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHH
Q 045393           17 IKQLALRQDIF---STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS   93 (580)
Q Consensus        17 ~~~ll~~~~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   93 (580)
                      ++.|++++...   ...+.++.||||+|+..|+.+++++|++.|++         ++.+|..|.||||+|+..|+.++++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~d~~g~tpLh~A~~~g~~~~v~   71 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---------PSQPNEEGITALHNAICGANYSIVD   71 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---------TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---------CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            35566665332   23445667788888888888888888888887         7788888888888888888888888


Q ss_pred             HHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH--HHcCcHHH
Q 045393           94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDI  171 (580)
Q Consensus        94 ~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~~~~~~  171 (580)
                      +|+++|++++             .+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|  +..|+.++
T Consensus        72 ~Ll~~ga~~n-------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~  138 (229)
T 2vge_A           72 FLITAGANVN-------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC  138 (229)
T ss_dssp             HHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred             HHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHH
Confidence            8888888765             46778888888888888888888888888888755556888888888  77888888


Q ss_pred             HHHHHhcCC
Q 045393          172 ACFIIDKSP  180 (580)
Q Consensus       172 v~~Ll~~~~  180 (580)
                      +++|++.+.
T Consensus       139 v~~Ll~~ga  147 (229)
T 2vge_A          139 ATYLADVEQ  147 (229)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHcCC
Confidence            888887764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.2e-25  Score=195.75  Aligned_cols=151  Identities=22%  Similarity=0.268  Sum_probs=119.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhc-CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      ++|+.|++.|+.+.+++|++.. ...+..+..|.||||+ +..|+.+++++|++.|.+         ++.+|..|.||||
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~   73 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---------PNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---------CCCcCCCCCCHHH
Confidence            5788888888888888888772 2455577778888888 888888888888888877         7777888888888


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      +|+..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|++. ++++ ..+..|.|||+
T Consensus        74 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~  138 (156)
T 1bd8_A           74 DAARTGFLDTLKVLVEHGADVN-------------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLE  138 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCCC-------------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHH
Confidence            8888888888888888887765             4677788888888888888888888887 5554 56778888888


Q ss_pred             HHHHcCcHHHHHHHHhc
Q 045393          162 IAIDARLNDIACFIIDK  178 (580)
Q Consensus       162 ~A~~~~~~~~v~~Ll~~  178 (580)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            88888888888888764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=5.7e-26  Score=214.51  Aligned_cols=176  Identities=14%  Similarity=0.076  Sum_probs=111.6

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      .|.||||.|+..++.+.++.|++++.+ ++. +..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            566777777777777777777766654 332 356778888888888888888888888766 67788888888888888


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCC-cHHHHH--HhcCChhHHH
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGN-TPLHLA--AMGLHSDVVF  346 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~~~~  346 (580)
                      |+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++   ++++.+|..|. ||||+|  +..|+.++++
T Consensus        81 g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            888888888888888 7888888888888888888888888888874   44788887776 888888  6778888888


Q ss_pred             HhhcCcccccccccc-------cCCCCCHHHHHH
Q 045393          347 TLSRHKSVNIRAKNH-------SARSNTALEIAE  373 (580)
Q Consensus       347 ~Ll~~~~~d~~~~n~-------~~~g~t~l~~a~  373 (580)
                      +|+.. |++++..|.       +..+.+|++++.
T Consensus       157 ~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          157 FLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             HHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             HHHHh-hhcccccccceEEEEeccCCCCCCcccc
Confidence            88864 777776543       115666665543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.1e-25  Score=212.45  Aligned_cols=207  Identities=17%  Similarity=0.194  Sum_probs=139.6

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393          156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS  235 (580)
Q Consensus       156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  235 (580)
                      |.||||.|+..++.+.++.|++++.. .+..  +.+.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMR-VKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCC-cccC--chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            44444444444444444444444422 1111  1567777777777777777777777664 788889999999999999


Q ss_pred             CChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC-CHHHHH--HHcCCHHHHHHH
Q 045393          236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR-SILHVA--AKHGNWNIVSFI  312 (580)
Q Consensus       236 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~L  312 (580)
                      |+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+|  +..|+.+++++|
T Consensus        81 g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            9999999999999887 77889999999999999999999999999999 788887776 999999  888999999999


Q ss_pred             hcCcchhhhcc------cccCCCCcHHHHHHhcCChhHHHHhhcCcccc------cccccccCCCCCHHHHHH
Q 045393          313 LRSPEMENLIN------LVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN------IRAKNHSARSNTALEIAE  373 (580)
Q Consensus       313 l~~~~~~~~~n------~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d------~~~~n~~~~g~t~l~~a~  373 (580)
                      ++.+......+      ..|..|.++++++...|.  +++.|.+. +.+      ....+.  .|.+|..+..
T Consensus       159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~-~~~~~~Ww~~~~~~~--~G~~P~~yv~  226 (239)
T 1ycs_B          159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE-DEDEIEWWWARLNDK--EGYVPRNLLG  226 (239)
T ss_dssp             HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC-TTSCSSEEEEEETTE--EEEEEGGGEE
T ss_pred             HHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec-CCCCCCEEEEEECCc--EEEeehHHee
Confidence            99854422222      227789999999988886  44444432 222      234455  7888877654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.1e-25  Score=194.71  Aligned_cols=147  Identities=23%  Similarity=0.234  Sum_probs=113.6

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCC-H
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS-I  296 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~  296 (580)
                      ....+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ .|+.+++++|+++|++ ++.+|..|+| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            3455778899999999999999999999998887 677889999999985 8999999999999988 8999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393          297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE  373 (580)
Q Consensus       297 Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~  373 (580)
                      ||+|+..|+.+++++|+++   +++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  .|.||.+-+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~~~~~~  152 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH--ARIDAAEGPS  152 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C--------------------
T ss_pred             HHHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCc--CcCcccccCC
Confidence            9999999999999999988   455899999999999999999999999999965 999999999  9999887543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=8.7e-25  Score=186.99  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=121.3

Q ss_pred             ccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-CC
Q 045393          216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-DR  294 (580)
Q Consensus       216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~  294 (580)
                      ..++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+. |+.+++++|++++++ ++.+|.. |+
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            347788999999999999999999999999999887 6778899999999999 999999999999999 8899999 99


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      ||||+|+..|+.+++++|++++   .+++.+|..|.||||+|+..++.+++++|+++ |+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTC---CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            9999999999999999999984   45899999999999999999999999999964 554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=4.7e-25  Score=198.70  Aligned_cols=161  Identities=15%  Similarity=0.133  Sum_probs=121.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhhCCccccccC-CCCChHHHHHHHcCCh----HHHHHHHHhchhcccccCCCCCcHHHH
Q 045393          191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNV----KMAQRLLEESKRLAYKRDCNGETPLHL  265 (580)
Q Consensus       191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~  265 (580)
                      ++++|+.|+..|+.+.++.++..+..   ..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|.||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            45677888888888887777776533   333 5688888888888864    4788888888887 6777888888888


Q ss_pred             HHHcCc------HHHHHHHHHhCCCccccccCCCC-CHHHHHHHcCC-----HHHHHHHhc-CcchhhhcccccCCCCcH
Q 045393          266 AAENGK------LKVLKLLINKYPDAIEIRNNSDR-SILHVAAKHGN-----WNIVSFILR-SPEMENLINLVDRNGNTP  332 (580)
Q Consensus       266 A~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~iv~~Ll~-~~~~~~~~n~~d~~G~T~  332 (580)
                      |+..|+      .+++++|+++|++ ++.+|..|+ ||||+|+..+.     .+++++|++ +   ++++|.+|..|.||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~Tp  157 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTA  157 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCH
Confidence            888776      5778888888888 788888888 88888888443     458888887 6   44588888888888


Q ss_pred             HHHHHhcCChhHHHHhhcCccccccccc
Q 045393          333 LHLAAMGLHSDVVFTLSRHKSVNIRAKN  360 (580)
Q Consensus       333 Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n  360 (580)
                      ||+|+..++.+++++|+.. ..+.+.++
T Consensus       158 L~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence            8888888888888887754 33444443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=9.7e-25  Score=196.66  Aligned_cols=159  Identities=18%  Similarity=0.130  Sum_probs=137.1

Q ss_pred             CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      +.++|+.|++.|+.+.++.+++.+.+.  ..+..|.||||+|+.+|+.    +++++|+++|++ ++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence            457899999999999999999877432  2236799999999999975    599999999999 899999999999999


Q ss_pred             HHcCC------HHHHHHHhcCcchhhhcccccCCCC-cHHHHHHhcCC-----hhHHHHhhcCcccccccccccCCCCCH
Q 045393          301 AKHGN------WNIVSFILRSPEMENLINLVDRNGN-TPLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNHSARSNTA  368 (580)
Q Consensus       301 ~~~~~------~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~-----~~~~~~Ll~~~~~d~~~~n~~~~g~t~  368 (580)
                      +..++      .+++++|+++   ++++|.+|..|+ ||||+|+..+.     .+++++|+...|+|++.+|.  .|+||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~---Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~Tp  157 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTA  157 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT---TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCH
T ss_pred             HHcCCcchhhHHHHHHHHHHC---CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCH
Confidence            99987      5789999999   555999999999 99999999554     45889999757999999999  99999


Q ss_pred             HHHHHHHhhCChhhHHHHHHHHHHHhhhhh
Q 045393          369 LEIAEITRANGKEIQKHLTLKALKTAYAKR  398 (580)
Q Consensus       369 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  398 (580)
                      |++|..       .++.++++.|.++..+.
T Consensus       158 L~~A~~-------~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          158 LEFVKR-------CQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HHHHHT-------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------cCCHHHHHHHHHHHHHH
Confidence            999987       45667888888766543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.1e-23  Score=180.17  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=118.2

Q ss_pred             ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCC
Q 045393           27 FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVG  106 (580)
Q Consensus        27 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  106 (580)
                      .+..+..|.||||+|+..|+.+++++|+++|.+         ++.+|..|.||||+|+. |+.+++++|+++|++++   
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~---   71 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN---   71 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS---
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC---
Confidence            445788899999999999999999999999988         88889999999999999 99999999999998876   


Q ss_pred             CcchhhhhhhccCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 045393          107 PAPVLESLFRMTDIE-GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP  180 (580)
Q Consensus       107 ~~~~~~~~l~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  180 (580)
                                .+|.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++++
T Consensus        72 ----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           72 ----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             ----------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             ----------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                      47778 9999999999999999999999999876 578899999999999999999999998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=2.3e-23  Score=182.73  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=114.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCc-HHHHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGET-PLHLAAE  268 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~  268 (580)
                      .|.||||.|+..|+.+++++|++.+.. ++..|..|.||||+|+ .|+.+++++|+++|+++ +.++..|.| |||+|+.
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHH
Confidence            788999999999999999999988665 8888999999999985 89999999999999887 778899999 9999999


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      .|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|   ++++.+|..|.||.+-+
T Consensus        88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAA---GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC---CCCCccCcCcCcccccC
Confidence            9999999999999999 8999999999999999999999999999994   45999999999998744

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=8.9e-23  Score=171.79  Aligned_cols=126  Identities=40%  Similarity=0.637  Sum_probs=112.9

Q ss_pred             CCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc
Q 045393          224 HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH  303 (580)
Q Consensus       224 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  303 (580)
                      +|+||||.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            4889999999999999999999998877 66788899999999999999999999999988 888899999999999999


Q ss_pred             CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      ++.+++++|++++   .+++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus        79 ~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             TCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             ChHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            9999999999984   45888999999999999999999999999865 553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=4.7e-23  Score=176.14  Aligned_cols=126  Identities=23%  Similarity=0.300  Sum_probs=110.2

Q ss_pred             cCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       221 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      ....+.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence            3456788999999999999999999998887 67788899999999999999999999999888 888899999999999


Q ss_pred             HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      +..|+.+++++|++++   .+++.+|.+|+||||+|+..++.+++++|++.
T Consensus        88 ~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcC---CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999884   45888999999999999999999999998864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=6.9e-23  Score=175.13  Aligned_cols=127  Identities=23%  Similarity=0.218  Sum_probs=115.0

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      ....+.||||+|+..|+.+++++|+++|.+         ++.+|..|.||||+|+..|+.+++++|+++|++++      
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------   74 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD---------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN------   74 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence            445688999999999999999999999988         88899999999999999999999999999998865      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS  179 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  179 (580)
                             .+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..|+.+++++|+++|
T Consensus        75 -------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 -------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                   478899999999999999999999999999876 57889999999999999999999999864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=3.1e-22  Score=168.44  Aligned_cols=125  Identities=28%  Similarity=0.404  Sum_probs=116.3

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393           33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE  112 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (580)
                      +|.||||+|+..|+.+++++|++.|.+         ++.++..|.||||+|+..|+.+++++|+++|++++         
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------   62 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---------   62 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc---------
Confidence            589999999999999999999999988         78889999999999999999999999999998865         


Q ss_pred             hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 045393          113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP  180 (580)
Q Consensus       113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  180 (580)
                          .+|..|.||||+|+..++.+++++|+++|++++ ..+..|.|||++|+..++.+++++|+++++
T Consensus        63 ----~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ----ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence                478899999999999999999999999999876 578899999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=9.8e-23  Score=174.43  Aligned_cols=127  Identities=26%  Similarity=0.348  Sum_probs=109.2

Q ss_pred             ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHH
Q 045393          220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV  299 (580)
Q Consensus       220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  299 (580)
                      .+|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            56788999999999999999999999998877 67788899999999999999999999999888 88889999999999


Q ss_pred             HHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          300 AAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       300 A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      |+..|+.+++++|++.   +++++.+|..|.||||+|+..+..+++++|.+.
T Consensus        83 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            9999999999999988   445888999999999999888887777766543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.2e-22  Score=173.87  Aligned_cols=126  Identities=24%  Similarity=0.323  Sum_probs=113.0

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL  333 (580)
Q Consensus       254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L  333 (580)
                      .+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++   +.+++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHH
Confidence            5688999999999999999999999999999 899999999999999999999999999998   445999999999999


Q ss_pred             HHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHH
Q 045393          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKT  393 (580)
Q Consensus       334 h~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~  393 (580)
                      |+|+..++.+++++|+++ |++++.+|.  .|+||+++|..       ....+++++|.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~~~~~~l~~l~~  130 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNI--FGLRPVDYTDD-------ESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGCCC-------HHHHHHHSCC--
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh-------ccHHHHHhhccc
Confidence            999999999999999976 999999999  99999999976       344555555444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.1e-23  Score=188.26  Aligned_cols=140  Identities=18%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcch
Q 045393           31 SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPV  110 (580)
Q Consensus        31 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~  110 (580)
                      +.+|.||||+|+..|+.+++++|++ +.+         ++.+|..|+||||+|+..|+.+++++|+++|++++.      
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------  104 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD---------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------  104 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------
Confidence            4578899999999999999999999 776         788899999999999999999999999999988753      


Q ss_pred             hhhhhhccC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393          111 LESLFRMTD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP  189 (580)
Q Consensus       111 ~~~~l~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  189 (580)
                             +| ..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.                  . 
T Consensus       105 -------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~-  157 (183)
T 3deo_A          105 -------RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------T-  157 (183)
T ss_dssp             -------CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------C-
T ss_pred             -------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------c-
Confidence                   45 789999999999999999999999998877 5788999999999764322                  1 


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhh
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGT  213 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~  213 (580)
                      .+.++|+.|+..|..++++.|.++
T Consensus       158 ~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          158 PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHcCHHHHHHHHHHh
Confidence            566888888888888888777653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.2e-21  Score=188.90  Aligned_cols=140  Identities=16%  Similarity=0.205  Sum_probs=108.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccc------cCCCCChHHHHHHHc---CChHHHHHHHHhchhcccccCCCCC
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDR------LDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYKRDCNGE  260 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~  260 (580)
                      ...++|+.|+..++.+.++.+++.+.+ ++.      .+..|.||||+|+..   ++.+++++|+++|+++ +.+|..|.
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~  227 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  227 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            455778888888888888888877765 554      577888888888886   7888888888888877 66788888


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       261 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                      ||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.+..         .|.||||+|+.+|
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcC
Confidence            888888888888888888888888 788888888888888888888888888876432         5788888888877


Q ss_pred             C
Q 045393          341 H  341 (580)
Q Consensus       341 ~  341 (580)
                      +
T Consensus       298 ~  298 (301)
T 2b0o_E          298 I  298 (301)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.1e-22  Score=192.43  Aligned_cols=171  Identities=15%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             CCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393           32 PGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL  111 (580)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (580)
                      ..+.+++..++..|+.+.++.+...+.+            .+..|.||||.|++.|+.++++.|++ +.+++        
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~--------   71 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD------------VVSEYETPWWTAARKADEQALSQLLE-DRDVD--------   71 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH------------HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT--------
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc------------cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC--------
Confidence            3456677777777777666655544443            45678899999999999999999998 77655        


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                           .+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|++++. +++..+. .|
T Consensus        72 -----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~-~g  144 (244)
T 3ui2_A           72 -----AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDE-RG  144 (244)
T ss_dssp             -----CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-TC
T ss_pred             -----CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CC
Confidence                 4788899999999999999999999999988875544778888888888888888888888763 3344444 66


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES  248 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~  248 (580)
                      .||||.|+..++                  ...+.||||+|+..|+.+++++|++.+
T Consensus       145 ~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          145 LTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            666666653211                  123455555555555555555555543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=7.6e-22  Score=165.39  Aligned_cols=109  Identities=20%  Similarity=0.297  Sum_probs=64.5

Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      ..|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence            34556666666666666666666665554 44555566666666666666666666666655 55566666666666666


Q ss_pred             cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      .++.+++++|++++   .+++.+|.+|.||||+|
T Consensus        83 ~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           83 EGHVSCVKLLLSKG---ADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHC
T ss_pred             cCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHh
Confidence            66666666666652   33555666666666665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.6e-21  Score=184.37  Aligned_cols=142  Identities=23%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCCHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN-NSDRSILHVAA  301 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~  301 (580)
                      ..|.||||.|+..|+.++++.|++ ++++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+| ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence            467889999999999999999998 7666 67788899999999999999999999999888 67777 77999999999


Q ss_pred             HcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChh
Q 045393          302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKE  381 (580)
Q Consensus       302 ~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~  381 (580)
                      .+|+.+++++|+++   +++++.+|..|+||||+|+..++                  +.  .+.|||++|..       
T Consensus       120 ~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~~~~------------------~~--~~~~~l~~a~~-------  169 (244)
T 3ui2_A          120 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILK------------------TT--PKGNPMQFGRR-------  169 (244)
T ss_dssp             HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHHT------------------TC--CCSSHHHHHHH-------
T ss_pred             HcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHHHh------------------cc--CCCCHHHHHHH-------
Confidence            99999999999988   44588889999999999986322                  13  78899999887       


Q ss_pred             hHHHHHHHHHHHhhhh
Q 045393          382 IQKHLTLKALKTAYAK  397 (580)
Q Consensus       382 ~~~~~~~~~L~~~ga~  397 (580)
                      ....++++.|.+.+.+
T Consensus       170 ~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          170 IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHHHEE
T ss_pred             cChHHHHHHHHHhccc
Confidence            5667788888877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.8e-21  Score=163.13  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      .+..|.||||+|+..|+.+++++|++.|.+         ++.+|..|+||||+|+..|+.+++++|+++|++++      
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------   67 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED---------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN------   67 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCC---------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT------
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCC---------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence            356788999999999999999999999988         88899999999999999999999999999998865      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCc
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARL  168 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~  168 (580)
                             .+|..|.||||+|+..++.+++++|+++|++++ ..|..|.||+++|...+.
T Consensus        68 -------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           68 -------APDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             -------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHH
T ss_pred             -------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHH
Confidence                   478899999999999999999999999999876 578999999999944333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=4e-22  Score=185.93  Aligned_cols=136  Identities=21%  Similarity=0.250  Sum_probs=113.4

Q ss_pred             ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCCHHH
Q 045393          220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRNNSDRSILH  298 (580)
Q Consensus       220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh  298 (580)
                      ..+..|.||||+|+..|+.++++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++ +++ ++.+|..|+||||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~  145 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALH  145 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHH
Confidence            34667899999999999999999999999887 67889999999999999999999999998 777 8999999999999


Q ss_pred             HHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccc
Q 045393          299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH  361 (580)
Q Consensus       299 ~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~  361 (580)
                      +|+..|+.+++++|+++   +++++.+|.+|.||||+|+..++.++++.|+.. +++.+.+|.
T Consensus       146 ~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~  204 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA  204 (222)
T ss_dssp             HHHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence            99999999999999998   455899999999999999999999999999865 777777766

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=3.8e-21  Score=173.37  Aligned_cols=138  Identities=22%  Similarity=0.241  Sum_probs=118.6

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccC-CCCCcHHHHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD-CNGETPLHLAAE  268 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~  268 (580)
                      .|.||||.|+..|+.++++.|++ + ..++..|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence            67788888888888888888888 4 348888999999999999999999999999999888 4445 889999999999


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      .|+.+++++|+++|++ ++.+|..|+||||+|++.++.                    ..+.+||++|+..|+.++++.|
T Consensus       120 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          120 YVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999998 889999999999999874322                    3568999999999999999988


Q ss_pred             hcC
Q 045393          349 SRH  351 (580)
Q Consensus       349 l~~  351 (580)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=188.72  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=114.4

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHh---CCHHHHHHHHhcCcccccCC
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARI---GDRAIVSEIMKYLPAVNQVG  106 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~  106 (580)
                      ......++|+.|+..|+.+.++.|++.|++++....   ....+..|.||||+|+..   |+.+++++|+++|++++   
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~---~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn---  220 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP---GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD---  220 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE---CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT---
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCC---CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC---
Confidence            344567889999999999999999988877432210   112577888999999987   88999999999988865   


Q ss_pred             CcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCC
Q 045393          107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT  186 (580)
Q Consensus       107 ~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~  186 (580)
                                .+|.+|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..++.+++++|+++++.     
T Consensus       221 ----------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----  284 (301)
T 2b0o_E          221 ----------AKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-----  284 (301)
T ss_dssp             ----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----
T ss_pred             ----------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----
Confidence                      477889999999999999999999999988876 5788899999999999999999999988754     


Q ss_pred             CCCCCccHHHHHHHcCCH
Q 045393          187 RLPDELTLIHFVVMRQNY  204 (580)
Q Consensus       187 ~~~~~~t~L~~A~~~~~~  204 (580)
                         .|.||||.|+..|+.
T Consensus       285 ---~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ---TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ---TTSSCCC--------
T ss_pred             ---CCCChhHHHHhcCCc
Confidence               567889999887753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.7e-20  Score=179.15  Aligned_cols=122  Identities=20%  Similarity=0.288  Sum_probs=98.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHHhchhcc-----cccCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393          226 RNPLHYAAASGNVKMAQRLLEESKRLA-----YKRDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRNNSDRSIL  297 (580)
Q Consensus       226 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  297 (580)
                      .++|+.|+..|+.+.++.+++.|.+..     +..+..|.||||+|+..   |+.+++++|+++|++ ++.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence            357888888888888888888877642     23367788888888888   788888888888888 788888888888


Q ss_pred             HHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          298 HVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       298 h~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      |+|+.+|+.+++++|+++   +++++.+|.+|.||||+|+..|+.+++++|++.
T Consensus       210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            888888888888888887   445888888888888888888888888888865

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=7.2e-20  Score=176.10  Aligned_cols=193  Identities=17%  Similarity=0.149  Sum_probs=146.8

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHH
Q 045393          118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF  197 (580)
Q Consensus       118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~  197 (580)
                      .|..+.++++.+...|+..+.+++...-+.........+....    .....-..+++............. ...++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTA-AKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccc-hhhhhhhh
Confidence            5778999999999999988887775543322211111111111    111111222333222221111111 34578999


Q ss_pred             HHHcCCHHHHHHHHhhCCcc-----ccccCCCCChHHHHHHHc---CChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          198 VVMRQNYDIMVKILGTNKEL-----IDRLDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       198 A~~~~~~~~~~~Ll~~~~~~-----~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      |+..++.+.+..++..+.+.     ++..+..|.||||+|+..   |+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHc
Confidence            99999999999999988764     344588999999999999   8999999999999998 78899999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE  317 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  317 (580)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++++
T Consensus       216 g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          216 DNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999 89999999999999999999999999998854

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=3.9e-20  Score=184.04  Aligned_cols=147  Identities=19%  Similarity=0.219  Sum_probs=115.9

Q ss_pred             cCCCCChHHHHHHHc-CChHHHHHHHHhchhcccccC--CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393          221 LDWHQRNPLHYAAAS-GNVKMAQRLLEESKRLAYKRD--CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL  297 (580)
Q Consensus       221 ~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  297 (580)
                      .+..+.|+||.|+.. ++.++++.|++.|+++ +..+  ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            344567899999999 9999999999999988 5556  7899999999999999999999999999 899999999999


Q ss_pred             HHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCc--ccccccccccCCCCCHHHHHHH
Q 045393          298 HVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK--SVNIRAKNHSARSNTALEIAEI  374 (580)
Q Consensus       298 h~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~--~~d~~~~n~~~~g~t~l~~a~~  374 (580)
                      |+|+..|+.+++++|+++   +++++.+|.+|.||||+|+..++.+++++|+...  +.+....+.  .+.|+++++..
T Consensus       273 h~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~--~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA--GDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCC--CCCCHHHHHHH
Confidence            999999999999999999   4559999999999999999999999999998653  334445555  88999998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1e-19  Score=144.04  Aligned_cols=93  Identities=32%  Similarity=0.467  Sum_probs=86.5

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393           33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE  112 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (580)
                      +|+||||+|+..|+.+++++|++.|.+         ++.+|..|+||||+|+..|+.+++++|+++|++++         
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---------   62 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            489999999999999999999999998         88999999999999999999999999999999876         


Q ss_pred             hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393          113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV  147 (580)
Q Consensus       113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  147 (580)
                          .+|.+|.||||+|+..|+.+++++|+++|++
T Consensus        63 ----~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                4788999999999999999999999999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=4.5e-20  Score=171.92  Aligned_cols=127  Identities=19%  Similarity=0.253  Sum_probs=104.8

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAE  268 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~  268 (580)
                      .|.||||.|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence            677888888888888888888887655 788888999999999999999999999998 7766 7788899999999999


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchh
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEME  319 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  319 (580)
                      .|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++.|++.+...
T Consensus       150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999999998 8899999999999999999999999999886553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2e-19  Score=142.25  Aligned_cols=90  Identities=44%  Similarity=0.688  Sum_probs=65.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHH
Q 045393          258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA  337 (580)
Q Consensus       258 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~  337 (580)
                      +|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++   .+++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHH
Confidence            367777777777777777777777777 6777777777777777777777777777763   347777777777777777


Q ss_pred             hcCChhHHHHhhcC
Q 045393          338 MGLHSDVVFTLSRH  351 (580)
Q Consensus       338 ~~~~~~~~~~Ll~~  351 (580)
                      ..|+.+++++|++.
T Consensus        77 ~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           77 RNGHLEVVKLLLEA   90 (93)
T ss_dssp             HTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHc
Confidence            77777777777754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.1e-19  Score=150.21  Aligned_cols=109  Identities=33%  Similarity=0.472  Sum_probs=95.6

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393          254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL  333 (580)
Q Consensus       254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L  333 (580)
                      .+|.+|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|++++   .+++.+|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT---CCTTCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCCHH
Confidence            4678899999999999999999999999988 8888999999999999999999999999984   45889999999999


Q ss_pred             HHHHhcCChhHHHHhhcCcccccccccccCCCCCHH
Q 045393          334 HLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTAL  369 (580)
Q Consensus       334 h~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l  369 (580)
                      |+|+..++.+++++|+++ |+|+|.++.  .|.||-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~--~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAK-GADVNARSW--GSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTT-SSSHHHHSC--CCC---
T ss_pred             HHHHHCCCHHHHHHHHHc-CCCCCcCCc--cccccc
Confidence            999999999999999964 899999998  888874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=2.6e-19  Score=178.15  Aligned_cols=148  Identities=19%  Similarity=0.220  Sum_probs=117.8

Q ss_pred             CCccHHHHHHHc-CCHHHHHHHHhhCCccccccC--CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHH
Q 045393          190 DELTLIHFVVMR-QNYDIMVKILGTNKELIDRLD--WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA  266 (580)
Q Consensus       190 ~~~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  266 (580)
                      .+.++||.|+.. ++.++++.|++.+.+ ++..+  ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            567899999999 999999999998876 77777  89999999999999999999999999988 78899999999999


Q ss_pred             HHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       267 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.+..+......+..+.|+++.+....
T Consensus       276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999 8999999999999999999999999999886655556667778899999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=6.4e-19  Score=145.51  Aligned_cols=109  Identities=29%  Similarity=0.432  Sum_probs=98.6

Q ss_pred             ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHH
Q 045393          220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV  299 (580)
Q Consensus       220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  299 (580)
                      .+|.+|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            46889999999999999999999999999887 67789999999999999999999999999999 89999999999999


Q ss_pred             HHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393          300 AAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL  333 (580)
Q Consensus       300 A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L  333 (580)
                      |+..++.+++++|+++|   +++|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~g---a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKG---ADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTS---SSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcC---CCCCcCCccccccc
Confidence            99999999999999984   55999999999873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=1e-16  Score=130.97  Aligned_cols=90  Identities=20%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHH
Q 045393          255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH  334 (580)
Q Consensus       255 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  334 (580)
                      .+.+|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++   .+++.+|..|+||||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccccCCCcHHH
Confidence            455566666666666666666666666666 5666666666666666666666666666663   336666666666666


Q ss_pred             HHHhcCChhHHHHh
Q 045393          335 LAAMGLHSDVVFTL  348 (580)
Q Consensus       335 ~A~~~~~~~~~~~L  348 (580)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            66666666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=1.8e-16  Score=129.41  Aligned_cols=93  Identities=27%  Similarity=0.430  Sum_probs=83.8

Q ss_pred             ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393          218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL  297 (580)
Q Consensus       218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  297 (580)
                      ....|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence            5566888999999999999999999999999887 67789999999999999999999999999999 899999999999


Q ss_pred             HHHHHcCCHHHHHHH
Q 045393          298 HVAAKHGNWNIVSFI  312 (580)
Q Consensus       298 h~A~~~~~~~iv~~L  312 (580)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	580
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 2e-28
 Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 43/373 (11%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
               LHMA R  + +V + +L+         + + +  K   D+T LH AARIG   +V 
Sbjct: 33  VETPLHMAARAGHTEVAKYLLQ---------NKAKVNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 94  EIMKYLPAVNQVGPAPV--------------------LESLFRMTDIEGNTPLHNAVTNQ 133
            +++     N    A                       E+       +G TPLH A    
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT 193
             RV  +L+E+D+ P++   K   TPL +A+     DI   ++ +       +   +  T
Sbjct: 144 KVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP--HSPAWNGYT 200

Query: 194 LIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAY 253
            +H    +   ++   +L       +        PLH AA  G+ +M   LL +      
Sbjct: 201 PLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-N 258

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
             + +G TPLHL A+ G + V  +LI      ++       + LHVA+ +GN  +V F+ 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFL- 316

Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373
              + +  +N   + G +PLH AA   H+D+V  L ++   +    +      T L IA+
Sbjct: 317 --LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSD--GTTPLAIAK 371

Query: 374 ITRANGKEIQKHL 386
             R     +   L
Sbjct: 372 --RLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 2e-28
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 28/314 (8%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
           T LH+A+ +G   IV  +++   + N             +++++  TPLH A    H  V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-------------VSNVKVETPLHMAARAGHTEV 48

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF 197
            + L++  +  ++   K  QTPL  A      ++   +++ +    N             
Sbjct: 49  AKYLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLENNA---NPNLATTAGHTPLH 104

Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDC 257
           +  R+ +   V  L   +     +      PLH AA  G V++A+ LLE           
Sbjct: 105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGK 163

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
           NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK     +   +L   +
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLL---Q 219

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEI 371
                N     G TPLHLAA   H+++V   LS+  + N+  K+     H       + +
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 279

Query: 372 AEITRANGKEIQKH 385
           A++   +G  +   
Sbjct: 280 ADVLIKHGVMVDAT 293

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 4e-24
 Identities = 65/314 (20%), Positives = 128/314 (40%), Gaps = 31/314 (9%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           LH+A    +  +++ +L+           +     N+  ET LH+AAR G   +   +++
Sbjct: 4   LHVASFMGHLPIVKNLLQ---------RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 54

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
               VN                 +  TPLH A    H  ++++L+E ++ P+      + 
Sbjct: 55  NKAKVN-------------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 101

Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL 217
                A +  +  +   +  ++ ++  T +    L     V  +     + ++L      
Sbjct: 102 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPL----HVAAKYGKVRVAELLLERDAH 157

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
            +    +   PLH A    N+ + + LL       +    NG TPLH+AA+  +++V + 
Sbjct: 158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
           L+          +    + LH+AA+ G+  +V+ +      +   NL +++G TPLHL A
Sbjct: 217 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGNKSGLTPLHLVA 272

Query: 338 MGLHSDVVFTLSRH 351
              H  V   L +H
Sbjct: 273 QEGHVPVADVLIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 5e-24
 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 28/298 (9%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G   LH+A ++   +V   +L            +          T LH+A    +  IV 
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLE---------RDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++    + +                  G TPLH A       V R L++     ++  +
Sbjct: 183 LLLPRGGSPHS-------------PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-S 228

Query: 154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGT 213
               TPL +A  A+        +  S ++         LT +H V    +  +   +L  
Sbjct: 229 VQGVTPLHLA--AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA-DVLIK 285

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +  ++D        PLH A+  GN+K+ + LL+        +   G +PLH AA+ G   
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTD 344

Query: 274 VLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNT 331
           ++ LL+          ++   + L +A + G  ++   +    +  + + + D++  +
Sbjct: 345 IVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 2e-19
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 38/202 (18%)

Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
           LT +H      +  I VK L       +  +     PLH AA +G+ ++A+ LL+   ++
Sbjct: 1   LTPLHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPD--------------------------- 284
              +  + +TPLH AA  G   ++KLL+    +                           
Sbjct: 60  N-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 285 -----AIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
                +         + LHVAAK+G   +   +L   E +   N   +NG TPLH+A   
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHH 175

Query: 340 LHSDVVFTLSRHK-SVNIRAKN 360
            + D+V  L     S +  A N
Sbjct: 176 NNLDIVKLLLPRGGSPHSPAWN 197

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-26
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 27/282 (9%)

Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS 179
           +E N  L  AV N+   +++ L+E  +  +    +   TPL  A+     DI   ++   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 180 PESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK 239
            + +   +          +        ++K+  +    ++  D++       AA  G VK
Sbjct: 63  ADPVLRKKNGAT---PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 240 MAQRLLEESKRLAYKRDC---------NGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
             + L +    +  +R            G T L  AAE G ++VLK+L+++    +   +
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLI------NLVDRNGNTPLHLAAMGLHSDV 344
           N  R+ L  A    + + V  I        L+      N+    G TPL LA    H  +
Sbjct: 180 NMGRNALIHALLSSDDSDVEAI-----THLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 345 VFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
           V  L   + + I   +      TAL +A       K+I + L
Sbjct: 235 VQRLLEQEHIEINDTDS--DGKTALLLA--VELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 2e-19
 Identities = 47/279 (16%), Positives = 97/279 (34%), Gaps = 39/279 (13%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
            N +L  AV+  +  +++++L            ++  Q+     T LH A ++    IV 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG--------GANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 94  EIMKYLPAVNQVGPAPVLESLF--------------------RMTDIEGNTPLHNAVTNQ 133
            ++++               L                        D  G T    A    
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 134 HKRVIRILVEKDS---------VPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLN 184
             + ++ L ++ +              + K   T L  A +    ++   ++D+    +N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 185 TTRLPDELTLIHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
                    LIH ++   + D+  +  +L  +   ++      + PL  A    ++ + Q
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           RLLE+        D +G+T L LA E    K+ +LL  +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 94.2 bits (233), Expect = 1e-21
 Identities = 39/345 (11%), Positives = 91/345 (26%), Gaps = 35/345 (10%)

Query: 17  IKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSL---LRQKN 73
            +      ++   +     A+       +N + +R++L        R    L     +K 
Sbjct: 28  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 87

Query: 74  LMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
           +  E    +AA  G  + + + +  L   +++          ++   E       A  N 
Sbjct: 88  IKSEVICFVAAITGCSSAL-DTLCLLLTSDEI---------VKVIQAENYQAFRLAAENG 137

Query: 134 HKRVIRILVEKDSVP-SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192
           H  V+  L E       + I         +A +     +   + + +P         +  
Sbjct: 138 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 197

Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA 252
               +  + + +  ++  L                   +    G   +   +        
Sbjct: 198 YAFRWAAVGRGHHNVINFLLDC-------PVMLAYAEIHEFEYGEKYVNPFIAR-----H 245

Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
             R         L+  +G   ++                     L         + + F+
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQ-------GFYMLRNLIRRNDEVLLDDIRFL 298

Query: 313 LRSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355
           L  P ++ L     +  + N  L LA    +      L    SV 
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.4 bits (179), Expect = 9e-15
 Identities = 32/312 (10%), Positives = 71/312 (22%), Gaps = 34/312 (10%)

Query: 69  LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHN 128
           L   +  +   + +        +   +  Y    N+   A  L S      I+       
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN--AKQLWSDAHKKGIKSEVICFV 96

Query: 129 AVTNQHKRVIRI---LVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT 185
           A        +     L+  D +    I         +A +     +   + + +P  +  
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 186 TRLPDELTLIHFVVMRQNYDIMVKIL---GTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
               +            +   ++  L      +        +       A   G+  +  
Sbjct: 156 MIQAENYHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
            LL+                     E G+  V   +          R         ++  
Sbjct: 215 FLLD--------CPVMLAYAEIHEFEYGEKYVNPFIARHVN-----RLKEMHDAFKLSNP 261

Query: 303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH- 361
            G +++V              L        L      +  D +  L     +   A    
Sbjct: 262 DGVFDLV---------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 362 -SARSNTALEIA 372
               +N  L +A
Sbjct: 313 IPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 32/237 (13%)

Query: 153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG 212
           N      L +       ++    I  +  SL T    + + +  F+   +N + + ++L 
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHI--FLPGTKNMEQVRQLLC 66

Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG-- 270
                 +R      +  H                       K+    E    +AA  G  
Sbjct: 67  LYYAHYNRNAKQLWSDAH-----------------------KKGIKSEVICFVAAITGCS 103

Query: 271 -KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG 329
             L  L LL+      +++    +     +AA++G+ ++++ +      E +   +    
Sbjct: 104 SALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-IQAEN 161

Query: 330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
                LAA   H  V+  L         A   +                   +   L
Sbjct: 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 36/289 (12%), Positives = 81/289 (28%), Gaps = 33/289 (11%)

Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
           + E +  L        + + +  +  + +    ++      + +     +  +   +   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 179 SPESLNTT---------RLPDELTLIHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRN 227
                            +      +     +         + +L T+ E++  +      
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 228 PLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
               AA +G++ +  RL E     +             LAAENG L VL  L    P   
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

Query: 287 E--IRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN-----------------LINLVDR 327
              I+  +  +    A   G+ N+++F+L  P M                   +   V+R
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 248

Query: 328 N--GNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374
               +    L+      D+V      +   +            L+    
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 297

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.9 bits (224), Expect = 6e-21
 Identities = 45/294 (15%), Positives = 97/294 (32%), Gaps = 35/294 (11%)

Query: 77  ETALHIA-ARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
           E+ + +     G  AI   I +   +VN +                  T LH   +N   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE--SVNII------------DPRHNRTVLHWIASNSSA 46

Query: 136 RVIRILVEKDSVPS-------SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL 188
                L+  ++          + ++    TPL +A+ AR   +  +++    +     + 
Sbjct: 47  EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS 106

Query: 189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248
                            + +      K  I+ LD +    L   A +             
Sbjct: 107 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 166

Query: 249 KRLAY----------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILH 298
           ++ A                G T LH AA+   + ++K L+ +     + ++   ++ + 
Sbjct: 167 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 226

Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352
           +AA+ G   +V +++   +    +  VD   +T   LA    H ++V    R +
Sbjct: 227 LAAQEGRIEVVMYLI---QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 86.7 bits (213), Expect = 2e-19
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 25/287 (8%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           + +         I E + ++    +   +         + T LH  A         +++ 
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNIIDPRH---------NRTVLHWIASNSSAEKSEDLIV 54

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
           +         A V        D + NTPL  AV  + +R++  L++  + P+ Y      
Sbjct: 55  HEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 109

Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMV--------- 208
                A +     +   +     +        + +T +  V   +  D +          
Sbjct: 110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 169

Query: 209 -KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
            K+        D   +  R  LHYAA   N+ + + L+ E      K+D +G+TP+ LAA
Sbjct: 170 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 229

Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           + G+++V+  LI +    +E  + +D +   +A  + + NIV    R
Sbjct: 230 QEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 2e-19
 Identities = 44/233 (18%), Positives = 81/233 (34%), Gaps = 10/233 (4%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKR 136
           +T LHIA   G+   V  ++         G   +      + +    TPLH AV      
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQ----GGREL-----DIYNNLRQTPLHLAVITTLPS 54

Query: 137 VIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH 196
           V+R+LV   + P +                    +   +   +P +L+      +     
Sbjct: 55  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD 256
            V +       V++L      ID +D          A   N     +LL +       + 
Sbjct: 115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 174

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
            +G + LH A+  G L +++ L+    D   ++N  + + L VA      +I+
Sbjct: 175 YSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 6e-11
 Identities = 37/243 (15%), Positives = 84/243 (34%), Gaps = 18/243 (7%)

Query: 34  GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
           G+  LH+AV   N   +  ++        +     L   N + +T LH+A      ++V 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL-----FQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 94  EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
            ++    +                             +    R +       ++     N
Sbjct: 58  LLVTAGASPMA----------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

Query: 154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGT 213
               T L +A++    +    ++++  +            LIH V    N   MV++L  
Sbjct: 108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV--ENNSLSMVQLLLQ 165

Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
           +   ++   +   + LH A+  G + + + L+         ++C+ +TPL +A     + 
Sbjct: 166 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVID 224

Query: 274 VLK 276
           +L+
Sbjct: 225 ILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDA---IEIRNNSDRSILHVAAKHGNWNIVSFILR 314
           +G+TPLH+A   G L  +  L+N +      ++I NN  ++ LH+A      ++V  ++ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 315 SPEMEN 320
           +     
Sbjct: 62  AGASPM 67

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (212), Expect = 3e-19
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 22/281 (7%)

Query: 107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
           P+PV+    +   +E    L   +  + + +   L    S  +S    + Q    ++ D+
Sbjct: 26  PSPVVNDNEQKMKLE--AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 83

Query: 167 RLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQR 226
            L ++     +     LN        T +H++    N ++ VK L  +       D    
Sbjct: 84  LLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLEL-VKHLVKHGSNRLYGDNMGE 141

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAY---KRDCNGETPLHLAAENGKLK---------- 273
           + L  A  S N   +         L       D    T LH       +           
Sbjct: 142 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 201

Query: 274 --VLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNT 331
             ++  ++ K    I+   N   S  +        +I+  +     + N++N  D NG+T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 332 PLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
            L++AA   +  +V  L  +   +    N S      ++  
Sbjct: 262 CLNIAARLGNISIVDALLDYG-ADPFIANKSGL--RPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (198), Expect = 2e-17
 Identities = 49/330 (14%), Positives = 108/330 (32%), Gaps = 53/330 (16%)

Query: 22  LRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81
           L  D  S+      A+    V    Q++  E   Q+               +  +  +  
Sbjct: 10  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 69

Query: 82  IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRIL 141
            ++    +         L  VN   P   L  L    D  GNTPLH   +  +  +++ L
Sbjct: 70  GSS--NQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHL 126

Query: 142 VEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMR 201
           V+  S      +   ++ L  A+ +  N  +                             
Sbjct: 127 VKHGSNRLYG-DNMGESCLVKAVKSVNNYDSG---------------------------- 157

Query: 202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK------------MAQRLLEESK 249
             ++ ++  L      +   D   R  LH+   +  +             +   ++++  
Sbjct: 158 -TFEALLDYLYPC---LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 213

Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKY--PDAIEIRNNSDRSILHVAAKHGNWN 307
           R         E+  +      K  +L+ L  K+   + +  ++++  + L++AA+ GN +
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHLAA 337
           IV  +L   +      + +++G  P+   A
Sbjct: 274 IVDALL---DYGADPFIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 1e-18
 Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 9/223 (4%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182
           N  + N   +     ++  +  D   ++  ++  +T L  A                   
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQLGV 61

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242
               +     + +H        +I+  +LG   + ++ ++ +   PLHYAA+    ++A 
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
            LLE        +D    T +H AA  G LK++ +L+        I++    + LH+A  
Sbjct: 121 MLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACD 178

Query: 303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
                    ++        I + ++   TPL +A  G    ++
Sbjct: 179 EERVEEAKLLV---SQGASIYIENKEEKTPLQVAKGG-LGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 2e-13
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           +   A SG ++  +  +   K LA + D +  T LH A   G    +   + +    +  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVND 65

Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
           ++++  S LH+AA  G   IV  +L        +N V++NG TPLH AA     ++   L
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 349 SRHKSVNIRAKNHSARSNTAL 369
                 N  AK+H     TA+
Sbjct: 123 LEGG-ANPDAKDH--YEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-12
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 27/245 (11%)

Query: 35  NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSE 94
           N ++         + ++E +            SL  + +    TALH A   G   IV  
Sbjct: 4   NLMVCNLAYSGKLEELKESILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEF 55

Query: 95  IMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK 154
           +++                     D  G +PLH A +     +++ L+ K +  ++ +N+
Sbjct: 56  LLQLGVP-------------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQ 101

Query: 155 AYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN 214
              TPL  A     ++IA  +++         +   E T +H    +     M+ IL   
Sbjct: 102 NGCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEATAMHRAAAK-GNLKMIHILLYY 158

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKV 274
           K   +  D     PLH A     V+ A+ L+ +   + Y  +   +TPL +A   G   +
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVAK-GGLGLI 216

Query: 275 LKLLI 279
           LK ++
Sbjct: 217 LKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 4e-18
 Identities = 44/237 (18%), Positives = 75/237 (31%), Gaps = 16/237 (6%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
             LH A    +   V E++   P++                D +G  PLH +V+ Q   +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQ------------KDQDGRIPLHWSVSFQAHEI 49

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF 197
              L+ K    +              I   + ++                      +   
Sbjct: 50  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 109

Query: 198 VVMRQNYDI-MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD 256
            +        + + L  N   +   D   + PLH AA+ G++K+ + L    K     +D
Sbjct: 110 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 169

Query: 257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
             G TPL  A   G      LL+ KY    ++ +N       VA       +  F L
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 5e-17
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 6/224 (2%)

Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182
           N PLH A        ++ L+          ++  + PL  ++  + ++I  F++ K    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA- 241
                  D       +        +VK L       D      +       A G      
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 242 QRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAA 301
            + L E+      +D   + PLH AA  G LK+++LL      A+  ++    + L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             G+ +    ++     E   +LVD  G     +A    +  V 
Sbjct: 181 AEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVK 219

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 1e-13
 Identities = 40/251 (15%), Positives = 69/251 (27%), Gaps = 22/251 (8%)

Query: 35  NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSE 94
           N  LH A        ++E+L            SLL QK+      LH +       I S 
Sbjct: 1   NYPLHQACMENEFFKVQELLHS--------KPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

Query: 95  IMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK 154
           ++  +  VN                                    +    +   +     
Sbjct: 53  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112

Query: 155 AYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN 214
             +    ++     N  +  I D                 +H      +  ++  + G  
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKD-----------KFNQIPLHRAASVGSLKLIELLCGLG 161

Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKV 274
           K  ++  D     PL +A A G+   A  L+E+        D  G     +A      +V
Sbjct: 162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QV 218

Query: 275 LKLLINKYPDA 285
            K  +N   DA
Sbjct: 219 KKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
           LH A     +  V  +L S    +L+   D++G  PLH +      ++   L   
Sbjct: 4   LHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           N PLH A M      V  L   K   +  K+   R    L  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWS 41

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 54/300 (18%), Positives = 102/300 (34%), Gaps = 29/300 (9%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           +  A + RN+Q+ R I  + D     +     + K   D      A   GD   V  +++
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLE 61

Query: 98  YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
               +N               +++G T LH A  + +  +++ LVE              
Sbjct: 62  RGADINY-------------ANVDGLTALHQACIDDNVDMVKFLVENG-----ANINQPD 103

Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL 217
               I + A  +     I +            +        +  +     +     N++ 
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
           +D     +            ++ A++ L        +   +G T LH+AA  G  +VLKL
Sbjct: 164 VDIEAARKEEERIM------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
           LI    D + I++    + LH AA  G       ++   E    +  V++ G T   +A 
Sbjct: 218 LIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV---ENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (163), Expect = 6e-13
 Identities = 45/278 (16%), Positives = 89/278 (32%), Gaps = 24/278 (8%)

Query: 109 PVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARL 168
           PV++        +       A ++     +  L+E+ +  + Y N    T L  A     
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDN 85

Query: 169 NDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228
            D+  F+++                          Y  + + L +    +  ++     P
Sbjct: 86  VDMVKFLVENGANINQPDNEGWI---PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
           L  A      ++ Q  +              E  +   A           +N        
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------LNSGHINDVR 194

Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
              S  + LHVAA  G   ++  +    +    +N+ D +G TPLH AA     +    L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLL---IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
             +   ++ A N   +  TA ++A+      ++I  +L
Sbjct: 252 VENL-CDMEAVNKVGQ--TAFDVAD------EDILGYL 280

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 5e-17
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 21/224 (9%)

Query: 77  ETALHIAARIGDRAIVSEIMKYLPA----VNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
           ++ LH+A    ++A+  E+++ +      +N               +    TPLH AV  
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-------------FQNNLQQTPLHLAVIT 49

Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFI---IDKSPESLNTTRLP 189
               +   L+     P     +             L  +             S+      
Sbjct: 50  NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 109

Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
           +  T +H   +     I+  ++    ++  +   + R  LH A    N  +   LL+   
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD 293
               +    G +P  L       ++ + L     + +++   S+
Sbjct: 170 D-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 5e-14
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 8/218 (3%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN---KAYQTPLSIAIDARLNDIACFIID 177
           +G++ LH A+ ++ K +   ++ +     +++N      QTPL +A+     +IA  ++ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN---PLHYAAA 234
              +        +    +           ++    T   L   L     N    LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
            G + + + L+     +  +  CNG T LHLA +     ++ LL+    D +        
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGY 179

Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTP 332
           S   +     +  I    L    +ENL  L +      
Sbjct: 180 SPYQLTWGRPSTRIQQ-QLGQLTLENLQMLPESEDEES 216

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 6e-17
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 19/252 (7%)

Query: 114 LFRMTDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDI 171
           +F     +G+T LH AV +QH+  +  L+            N   QT L +A  A L + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEA 58

Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL---------GTNKELIDRLD 222
           +      +  +          T +H     + +     +L          ++  L    D
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 223 WHQRN---PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
                   P    +        +   E+ +      + +G TPLH+A  +   ++++LL 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
           +   D  +      R+ LH+A +    +++  +L   +           G TPL  A + 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL---KAGADPTARMYGGRTPLGSALLR 235

Query: 340 LHSDVVFTLSRH 351
            +  +   L  H
Sbjct: 236 PNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 49/267 (18%), Positives = 94/267 (35%), Gaps = 31/267 (11%)

Query: 26  IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR 85
           +F   +  G+  LH+AV  +++  +  +L           +  L  +N + +TALH+AA 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGF------SAGHEYLDLQNDLGQTALHLAAI 54

Query: 86  IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKD 145
           +G+ + V ++                     + +  G+T LH A   +      +L++  
Sbjct: 55  LGEASTVEKLYAAGAG-------------VLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 146 SVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL-----------PDELTL 194
                  +  Y T          +  A      +PE+    R             D  T 
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 195 IHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYK 254
           +H  V+ ++ +++  +     +L        R PLH A  +    + + LL+        
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TA 220

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINK 281
           R   G TPL  A       + +LL   
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 6e-11
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINK--YPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
               +G+T LHLA  +     L  L+      + ++++N+  ++ LH+AA  G  + V  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 312 ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTA 368
           +         + + +R G+T LHLA           L + +  + R  + +  + + 
Sbjct: 64  L---YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
           +   V  +G+T LHLA +  H   +  L    + +      +    TAL +A
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.2 bits (157), Expect = 1e-12
 Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 5/194 (2%)

Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
            D  G T LH A         + L++  +  +S  N               + +  F I 
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL---HAAVAADAMGVFQIL 75

Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
               + N      + T    +  R   + MV+ L T    I+  D   +  LH+AAA  N
Sbjct: 76  LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNN 135

Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297
            +    L          +D   ETPL LAA  G  +  K L++ + +  EI ++ DR   
Sbjct: 136 TEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPR 193

Query: 298 HVAAKHGNWNIVSF 311
            VA++  + +IV  
Sbjct: 194 DVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 38/211 (18%), Positives = 84/211 (39%), Gaps = 7/211 (3%)

Query: 135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTL 194
            +VI  L+ + +  ++ ++K  +T L +A      D A  ++D   ++ +          
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT--- 58

Query: 195 IHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYK 254
                +  +   + +IL  N+        H        AA   ++     L  +      
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
            D +G+T LH AA     + + +L+  + +  + +++ D + L +AA+ G++     +L 
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALL- 176

Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
             +      + D     P  +A+  LH D+V
Sbjct: 177 --DNFANREITDHMDRLPRDVASERLHHDIV 205

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 227 NPLHYAAASGNVKMAQRLLEE-----SKRLAYKRDCNGETPLHLAAEN---GKLKVLKLL 278
           + L  A  + ++    +   +      K          ET LHLA  +     L ++  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
           +    +  +       ++ +         +   +     +     + + +G TPL +A  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI----EIANESGETPLDIAKR 123

Query: 339 GLHSDVVFTLSRHKSVNIRAKNH 361
             H      L++  S    +  H
Sbjct: 124 LKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 28/131 (21%)

Query: 38  LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
           L  AV+ R+   + +       +  ++    L   +  DETALH+A R  DR  +  I+ 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKI---PLANGHEPDETALHLAVRSVDRTSL-HIVD 65

Query: 98  YLPAV------------------------NQVGPAPVLESLFRMTDIEGNTPLHNAVTNQ 133
           +L                             +      ++   + +  G TPL  A   +
Sbjct: 66  FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 134 HKRVIRILVEK 144
           H+    +L + 
Sbjct: 126 HEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 158 TPLSIAIDA-RLNDIACFI------IDKSPESLNTTRLPDELTLIHFVVMRQNYDI--MV 208
             L    +A +  DI   +      +D + +         + T +H  V   +     +V
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE 268
             L  N   +D+        LHY   + N +  + L    K      + +GETPL +A  
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL-LRGKASIEIANESGETPLDIAKR 123

Query: 269 NGKLKVLKLLINK 281
                  +LL   
Sbjct: 124 LKHEHCEELLTQA 136

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-09
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 6/159 (3%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
               L  A      + +R L+ ++ V    +N+  +T L + +          +   +  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
           ++  T              R  +   +K+L  +   ++  D     P+H A   G+  + 
Sbjct: 62  NVQDTSGTS----PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 242 QRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
             L  ES    ++RD  G TPL LA + G   ++ +L  
Sbjct: 118 SFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 8e-08
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 35/156 (22%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD-- 284
           + L  AAA G+V+  +RLL          +  G+T L +         L+LL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 285 -----------------------------AIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
                                         + + + +    +H+A + G+  +VSF+   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            +    ++  D  G TPL LA      D+V  L  H
Sbjct: 124 SD----LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 35/151 (23%)

Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF------ 311
            G+  L  AA  G ++ ++ L+++     +  N   ++ L V         +        
Sbjct: 2   AGDR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 312 -----------------------ILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
                                  +    E    +N+ D  G  P+HLA    H+ VV  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 349 SRHKSVNIRAKN-----HSARSNTALEIAEI 374
           +    ++ R          A    A ++ +I
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDI 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.9 bits (125), Expect = 7e-09
 Identities = 21/158 (13%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
           +    L  A        +RIL+   +  ++       +PL +A           ++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 181 ESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKM 240
                T++      +       N   ++   G +   ++  D  +   LH+A    + ++
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEV 115

Query: 241 AQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
            + LL +     + +    +T   ++ +NG   + ++L
Sbjct: 116 VE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 16/148 (10%), Positives = 36/148 (24%), Gaps = 33/148 (22%)

Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
            L  AA +G     + L+                 L     +     + L      DA  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 288 IRNNSDRSI------------------------------LHVAAKHGNWNIVSFILRSPE 317
             + +   +                              LH A +H +  +V  +    +
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL---IK 121

Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
               ++   +   T   ++    + D+ 
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLA 149

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 8e-09
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESL 183
             L +A        +  L++ +   ++           + +          +   +P+  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
           + T              R  +   ++ L   +  ++  D     PLH AA  G++++ + 
Sbjct: 63  DRTGFAV-----IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 117

Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
           L++ +      R+  G+T   LA   G+ +V+ L+   
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 28/153 (18%)

Query: 227 NPLHYAAASGNVKMAQRLLEE----------------------------SKRLAYKRDCN 258
           N L  AAA G+++    LL+                                     D  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
             T   +  +  +   L  L        ++    +   L +       ++          
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
            + +   +  G+T   LA +   ++VV  +  +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 17/169 (10%)

Query: 78  TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
             L  AA  GD   ++ +++    VN               +  G T L        +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNA-------------QNGFGRTALQVMKLGNPEIA 49

Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF 197
            R+L+   +                   AR   +         ++       +    +H 
Sbjct: 50  RRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 105

Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
                +  ++  ++      +   +         A   G  ++   +  
Sbjct: 106 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEK 144
             + +G+T    A       V+ ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 5/119 (4%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
           + L  AAA G V+  + LLE                  +   + ++              
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA-----ELLLLHGA 59

Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
           E       ++            +  ++        +++ D  G  P+ LA    H DV 
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
               L  A        +R L+E  + P++  +   +    + + +        +    P 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
             +   L            R+ +   + +L      +D  D   R P+  A   G+  +A
Sbjct: 63  CADPATLTR----PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 242 QRLLE 246
           + L  
Sbjct: 119 RYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 255 RDCNGETPLHLAAENGKLKVLKLLIN 280
           RD  G  P+ LA E G   V + L  
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
               +A  +G++   +  + + + +    +   +   + A            +       
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LEFLLLKG 58

Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
              N  D+  +           VS +           +   +G T L    
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 11/128 (8%), Positives = 34/128 (26%), Gaps = 1/128 (0%)

Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESL 183
             L ++       +++ ++ +   PS   ++      +         +   +      + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
             +     L         Q    +V+  G     +   D             G  + +Q 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 244 LLEESKRL 251
           L    +++
Sbjct: 122 LYGVQEKM 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	580
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-48  Score=397.89  Aligned_cols=363  Identities=26%  Similarity=0.316  Sum_probs=324.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++||.||..|+++++++|++.|...+..|..|+||||+|+..|+.+++++|+++|++         ++.+|..|+||||+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---------i~~~~~~g~t~L~~   72 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------VNAKAKDDQTPLHC   72 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------SSCCCTTSCCHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---------CCCCCCCCCCHHHH
Confidence            589999999999999999999987888999999999999999999999999999998         89999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcch--------------------hhhhhhccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPV--------------------LESLFRMTDIEGNTPLHNAVTNQHKRVIRILV  142 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------------~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll  142 (580)
                      |+..|+.+++++|++.+.+.........                    ........+.++.++++.|+..++.+++++|+
T Consensus        73 A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll  152 (408)
T d1n11a_          73 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL  152 (408)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998876443222111                    01223456788999999999999999999999


Q ss_pred             HcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccC
Q 045393          143 EKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLD  222 (580)
Q Consensus       143 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d  222 (580)
                      +++.+++ ..+.+|.+||+.|+..|+.+++++|++++. +++..+. .|.+|+|.+......+....++..... ....+
T Consensus       153 ~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~  228 (408)
T d1n11a_         153 ERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAES  228 (408)
T ss_dssp             HTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             HcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCC-cccccCC-CCCCcchhhhccchhhhhhhhhhcccc-ccccC
Confidence            9999887 578889999999999999999999999985 4455555 899999999999999999999887766 66778


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393          223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK  302 (580)
Q Consensus       223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  302 (580)
                      ..|.|||+.|+..++.++++.+.+.+... +..+..|.||++.|+..++.+++++|+++|++ ++..+..+.||||.++.
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASH  306 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcc
Confidence            88999999999999999999999988776 67788999999999999999999999999999 88899999999999999


Q ss_pred             cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhh
Q 045393          303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEI  382 (580)
Q Consensus       303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~  382 (580)
                      .++.++++++++.   +.++|.+|.+|+||||+|+++|+.+++++|+++ |+|+|++|.  +|+|||++|..       .
T Consensus       307 ~~~~~~~~~ll~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~--~G~t~L~~A~~-------~  373 (408)
T d1n11a_         307 YGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSS--DGTTPLAIAKR-------L  373 (408)
T ss_dssp             SSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCS--SSCCHHHHHHH-------T
T ss_pred             cCcceeeeeeccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC--CCCCHHHHHHH-------c
Confidence            9999999999998   455999999999999999999999999999975 999999999  99999999998       3


Q ss_pred             HHHHHHHHHHH
Q 045393          383 QKHLTLKALKT  393 (580)
Q Consensus       383 ~~~~~~~~L~~  393 (580)
                      ++.+++++|..
T Consensus       374 ~~~~iv~~L~~  384 (408)
T d1n11a_         374 GYISVTDVLKV  384 (408)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            45567776643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=354.35  Aligned_cols=325  Identities=26%  Similarity=0.372  Sum_probs=295.0

Q ss_pred             CchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhh
Q 045393           35 NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL  114 (580)
Q Consensus        35 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (580)
                      .||||+||..|+.++|++|+++|++         ++.+|..|+||||+|++.|+.+++++|+++|++++           
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~---------in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~-----------   60 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS---------PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-----------   60 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---------SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-----------
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-----------
Confidence            3899999999999999999999998         89999999999999999999999999999999876           


Q ss_pred             hhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC--------------------------------cccccCCCCHHHH
Q 045393          115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS--------------------------------SYINKAYQTPLSI  162 (580)
Q Consensus       115 l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~--------------------------------~~~~~~g~tpL~~  162 (580)
                        .+|.+|.||||+|+..|+.+++++|++.+++..                                ...+..+.++++.
T Consensus        61 --~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (408)
T d1n11a_          61 --AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  138 (408)
T ss_dssp             --CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             --CCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHH
Confidence              578899999999999999999999998765432                                2235678899999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHH
Q 045393          163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ  242 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  242 (580)
                      |+..++.+++++|++++. .++..+. .+.+|||.|+..++.++++.|+.++.+ ++..+..|.||+|.+....+.+...
T Consensus       139 a~~~~~~~~v~~ll~~~~-~~~~~~~-~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~  215 (408)
T d1n11a_         139 AAKYGKVRVAELLLERDA-HPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR  215 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTC-CTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCC-CCCcCCC-cCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhh
Confidence            999999999999999984 4455555 889999999999999999999999876 7889999999999999999999999


Q ss_pred             HHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhc
Q 045393          243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI  322 (580)
Q Consensus       243 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~  322 (580)
                      .++..+... ...+..|.||+|.|+..++.++++.+.+.+.. .+..|..|.||++.|++.++.+++++|++++   .++
T Consensus       216 ~l~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g---~~~  290 (408)
T d1n11a_         216 SLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG---VMV  290 (408)
T ss_dssp             HHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT---CCT
T ss_pred             hhhhccccc-cccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCC---Ccc
Confidence            999888766 56678899999999999999999999999888 7888999999999999999999999999884   458


Q ss_pred             ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393          323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA  399 (580)
Q Consensus       323 n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  399 (580)
                      +..+..+.||||.++..++.++++.+++. |+++|.+|.  +|.|||++|++       .++.+++++|+++||+..
T Consensus       291 ~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~--~G~T~Lh~A~~-------~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         291 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTK--LGYSPLHQAAQ-------QGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHTTCCSC
T ss_pred             ccccccccccchhhcccCcceeeeeeccc-cccccccCC--CCCCHHHHHHH-------cCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999975 899999999  99999999998       467889999999999854

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-36  Score=287.96  Aligned_cols=245  Identities=20%  Similarity=0.200  Sum_probs=137.8

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP  109 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  109 (580)
                      .+.+|+||||+||++|+.+++++|++.|++      ...++.+|..|+||||+|+..|+.+++++|+++|++++      
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~------~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~------   72 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL------   72 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS------
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCC------cccccCcCCCCCCccchHHhhccccccccccccccccc------
Confidence            567788888888888888888888887765      12366777888888888888888888888888887765      


Q ss_pred             hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393          110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP  189 (580)
Q Consensus       110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  189 (580)
                             .+|.+|.||||+|+..++.+++++|++.+........    ............+                   
T Consensus        73 -------~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~-------------------  122 (255)
T d1oy3d_          73 -------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPD-------------------  122 (255)
T ss_dssp             -------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------
T ss_pred             -------ccccccchhhhhhhccCchHHHHHHHhhccchhcccc----hhhhhHHhhhccc-------------------
Confidence                   4677888888888888888888888876653321111    0000000000000                   


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN  269 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  269 (580)
                      ....++..............+.......++.+|.+|.||||+|+..++.+++++|++.+++.....+..|.||||+|++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~  202 (255)
T d1oy3d_         123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA  202 (255)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             chHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccc
Confidence            00000011101111111111222222334455555666666666666666666666655555444445555666666655


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393          270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE  317 (580)
Q Consensus       270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  317 (580)
                      |+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|+
T Consensus       203 ~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         203 QAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            566666655555555 55555555555555555555555555555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-35  Score=279.15  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=186.0

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 045393           71 QKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (580)
Q Consensus        71 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~  150 (580)
                      ..+.+|+||||+||++|+.+++++|+++|++..          .++.+|..|.||||+|+..|+.+++++|+++|++++ 
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~----------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-   72 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-   72 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------cccCcCCCCCCccchHHhhccccccccccccccccc-
Confidence            457899999999999999999999999987743          345689999999999999999999999999999887 


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393          151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~  230 (580)
                      ..|..|.||||+|+..++.+++++|++..........     ............+                  ....++.
T Consensus        73 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~  129 (255)
T d1oy3d_          73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS-----DTYLTQSQDCTPD------------------TSHAPAA  129 (255)
T ss_dssp             CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------
T ss_pred             ccccccchhhhhhhccCchHHHHHHHhhccchhcccc-----hhhhhHHhhhccc------------------chHHHHH
Confidence            5789999999999999999999999987643221111     0000000000000                  0001111


Q ss_pred             HHHHcCCh-HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHH
Q 045393          231 YAAASGNV-KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV  309 (580)
Q Consensus       231 ~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv  309 (580)
                      ........ .........+... +.++..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|++.|+.+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v  208 (255)
T d1oy3d_         130 VDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL  208 (255)
T ss_dssp             --------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             HHhhcchhHHHHHHhhhcCccc-ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHH
Confidence            11111111 1112222233333 678899999999999999999999999999996667788999999999999999999


Q ss_pred             HHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          310 SFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       310 ~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      ++|+++   ++++|.+|.+|+||||+|+..++.+++++|+++ ||+
T Consensus       209 ~~Ll~~---gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         209 ELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             HHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             HHHHHC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            999998   455999999999999999999999999999976 775

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=278.81  Aligned_cols=267  Identities=21%  Similarity=0.229  Sum_probs=229.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccccc
Q 045393           75 MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK  154 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  154 (580)
                      +++|+||.|+++|+.++|++|+++|++++.            ..+..|.||||+|+..|+.+++++|++.+.... ..+.
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~------------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~   70 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKK   70 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc------------cCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-cccc
Confidence            367999999999999999999999999763            245689999999999999999999999998776 4677


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCc---------cccccCCCC
Q 045393          155 AYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKE---------LIDRLDWHQ  225 (580)
Q Consensus       155 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~---------~~~~~d~~g  225 (580)
                      .+.+|.+.+...+..+.....++..... ...+. .+.++++.++..++...+..++.....         .....+..|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (285)
T d1wdya_          71 NGATPFLLAAIAGSVKLLKLFLSKGADV-NECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             ccchhhHHHhhcCCccccchhhhhcccc-ccccc-CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccC
Confidence            8899999999999999999999987543 23333 889999999999999999888875433         123345679


Q ss_pred             ChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHH----cCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          226 RNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAE----NGKLKVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       226 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      .||||+|+++|+.+++++|+++ |+++ +..+..|.++.+.+..    .+..+++++|+++|++ ++.+|..|+||||+|
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILA  226 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchh
Confidence            9999999999999999999986 4554 7778888888777654    3456799999999999 899999999999999


Q ss_pred             HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccc
Q 045393          301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH  361 (580)
Q Consensus       301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~  361 (580)
                      ++.|+.+++++|++..  +.++|.+|.+|+||||+|+++|+.+++++|+++ |+|+|++|.
T Consensus       227 ~~~~~~~~v~~lL~~~--g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             hhcCcHHHHHHHHHcC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccC
Confidence            9999999999999853  456999999999999999999999999999965 999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=263.94  Aligned_cols=220  Identities=19%  Similarity=0.271  Sum_probs=199.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHc
Q 045393          122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMR  201 (580)
Q Consensus       122 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~  201 (580)
                      ++++|+.++..|+.+.++.+++.++......|..|+||||+|+..|+.++++++++....... ... .+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDD-AGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCT-TCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-ccc-cccccccccccc
Confidence            568999999999999998888887777778899999999999999999999999999854433 333 788999999999


Q ss_pred             CCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHh
Q 045393          202 QNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK  281 (580)
Q Consensus       202 ~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  281 (580)
                      ++.++++.|++++.+ ++..|.+|.||||+|+..|+.+++++|+++|.++ +.++..|.||||+|+..++.+++++|.+.
T Consensus        81 ~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            999999999998865 8899999999999999999999999999999887 77889999999999999999999999999


Q ss_pred             CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       282 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      +.+ ++.+|..|+||||+|+.+|+.+++++|++.   +++++.+|.+|+||||+| ..|+.++++.|++
T Consensus       159 ~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~---Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 KAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQ---GASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cce-eeeccCCCCceeccccccCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999 899999999999999999999999999998   455999999999999998 5789999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=268.67  Aligned_cols=266  Identities=17%  Similarity=0.149  Sum_probs=230.7

Q ss_pred             CCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccc-cCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393           34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQK-NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE  112 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  112 (580)
                      ++|+||.|++.|+.++|++|+++|++         ++.+ +..|+||||+|+..|+.+++++|++.+....         
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~d---------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~---------   66 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGAN---------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV---------   66 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCC---------cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc---------
Confidence            57999999999999999999999998         6655 4579999999999999999999999987754         


Q ss_pred             hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCC-------
Q 045393          113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNT-------  185 (580)
Q Consensus       113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~-------  185 (580)
                          ..+..+.+|.+.|+..+..+.....++...+.. ..+..+.++++.|+..++...++.++.........       
T Consensus        67 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (285)
T d1wdya_          67 ----LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             ----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             ----ccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhh
Confidence                367788999999999999999999999877655 46788999999999999999999998875432111       


Q ss_pred             -CCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcC----ChHHHHHHHHhchhcccccCCCCC
Q 045393          186 -TRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG----NVKMAQRLLEESKRLAYKRDCNGE  260 (580)
Q Consensus       186 -~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~g~  260 (580)
                       .....|.||||.|+.+++.+++++|+++.+..++..+..|.++++.+...+    ..+++++|+++|+++ +.++..|.
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~  220 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGK  220 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSC
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCC
Confidence             112278999999999999999999999877778999999999888776544    357999999999987 67889999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccC
Q 045393          261 TPLHLAAENGKLKVLKLLINK-YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR  327 (580)
Q Consensus       261 tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~  327 (580)
                      ||||.|++.|+.+++++|+++ +.+ ++.+|.+|+||||+|+++|+.+++++|+++|   +++|++|.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G---Ad~n~~d~  284 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSSC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCcccC
Confidence            999999999999999999986 556 8999999999999999999999999999994   45888873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-33  Score=258.62  Aligned_cols=220  Identities=27%  Similarity=0.353  Sum_probs=161.9

Q ss_pred             CCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhh
Q 045393           34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLES  113 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (580)
                      +++.|+.+|..|+.+.++.++...+.        .++.+|..|+||||+|+..|+.+++++|++.+....          
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~--------~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~----------   64 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKS--------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------   64 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGG--------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC----------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCC--------cCcCcCCCCCCHHHHHHHhhhhcccccccccccccc----------
Confidence            46778888888888888888777665        577888888888888888888888888888776643          


Q ss_pred             hhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCcc
Q 045393          114 LFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT  193 (580)
Q Consensus       114 ~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t  193 (580)
                         ..+..+.++++.++..++.+++++|++++++++ ..|..|.||||+|+..|+.+++++|++++. +           
T Consensus        65 ---~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~-d-----------  128 (223)
T d1uoha_          65 ---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA-N-----------  128 (223)
T ss_dssp             ---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-C-----------
T ss_pred             ---cccccccccccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCC-C-----------
Confidence               345677888888888888888888888887665 466677777777777777777777776653 2           


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHH
Q 045393          194 LIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK  273 (580)
Q Consensus       194 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  273 (580)
                                              ++..+..|.||||+|+..++.+++++|.+.+.++ +.+|..|.||||.|+..|+.+
T Consensus       129 ------------------------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         129 ------------------------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             ------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHH
T ss_pred             ------------------------CCCcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHH
Confidence                                    3444556666777777777777777777666665 566677777777777777777


Q ss_pred             HHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 045393          274 VLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       274 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      ++++|+++|++ ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       184 ~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         184 EAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            77777777777 677777777777776 4577777777764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-33  Score=258.04  Aligned_cols=223  Identities=25%  Similarity=0.298  Sum_probs=147.0

Q ss_pred             CchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhh
Q 045393           35 NAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL  114 (580)
Q Consensus        35 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  114 (580)
                      ++|||+||..|+.++++.|++.++.        .++.+|.+|+||||+|+..|+.+++++|+++|++++.          
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~--------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~----------   62 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS--------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL----------   62 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG--------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG----------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC--------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccc----------
Confidence            5899999999999999999987765        5888899999999999999999999999999887653          


Q ss_pred             hhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC-cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCcc
Q 045393          115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS-SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT  193 (580)
Q Consensus       115 l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t  193 (580)
                      ....+..|.+|+|+++..+..++++.++..+.... ...+..+.+|++.++..++.+++++|++.+..            
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------------  130 (229)
T d1ixva_          63 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------  130 (229)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc------------
Confidence            23467788999999999999999988888776443 23455566667766666666666666666532            


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHH
Q 045393          194 LIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK  273 (580)
Q Consensus       194 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  273 (580)
                                              .+..|..|+||||+|+..|+.+++++|++.+....+.+|.+|+||||+|+..|+.+
T Consensus       131 ------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         131 ------------------------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             ------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             ------------------------ccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH
Confidence                                    23334444555555555555555555555443333444555555555555555555


Q ss_pred             HHHHHHHh-CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393          274 VLKLLINK-YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS  315 (580)
Q Consensus       274 ~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  315 (580)
                      ++++|+++ |++ ++.+|.+|+||||+|+.   .+++++|+++
T Consensus       187 ~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         187 AAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             HHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHc
Confidence            55555532 444 45555555555555542   3455555544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.6e-34  Score=275.28  Aligned_cols=268  Identities=19%  Similarity=0.252  Sum_probs=154.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.+++.+..+.+..++.+...+...+..|+||||+||..|+.++|++|+.+....... .+..++.+|.+|+||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~-~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA-AGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH-TCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHH-cCCCccccCCCCCeeecc
Confidence            4566555554444444555444444434456999999999999999998886543220000 011278889999999999


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--CCcccccCCCCHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV--PSSYINKAYQTPL  160 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~tpL  160 (580)
                      |++.|+.+++++|+++|++++             .+|.+|.|||++|+..++.++++.+...+..  .....+..+.++.
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n-------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  147 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPT-------------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  147 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSC-------------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             ccccccccccccccccccccc-------------cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhH
Confidence            999999999999999988865             4678899999999999999988888765321  1123455556666


Q ss_pred             HHHHHcCcHH---HHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393          161 SIAIDARLND---IACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN  237 (580)
Q Consensus       161 ~~A~~~~~~~---~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~  237 (580)
                      +.+...+..+   .+..+.+.......                            ......+..+..|.||||.++..++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~t~L~~~~~~~~  199 (277)
T d2fo1e1         148 MIVAHNEGRDQVASAKLLVEKGAKVDY----------------------------DGAARKDSEKYKGRTALHYAAQVSN  199 (277)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSC----------------------------CSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred             HHHHhcccccccccccccccccccccc----------------------------cccccccccccCCCCcccccccccc
Confidence            6665544322   22222222110000                            0001122334445555555555555


Q ss_pred             hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393          238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL  313 (580)
Q Consensus       238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  313 (580)
                      .+.++.++.......+.+|..|.||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|+
T Consensus       200 ~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         200 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55555444333333244444555555555555555555555555554 4445555555555555555555555444

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.7e-34  Score=272.92  Aligned_cols=258  Identities=19%  Similarity=0.286  Sum_probs=196.7

Q ss_pred             CchhhHHHh-cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHH--------hcCcccccC
Q 045393           35 NAVLHMAVR-FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIM--------KYLPAVNQV  105 (580)
Q Consensus        35 ~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll--------~~~~~~~~~  105 (580)
                      .||||+++. .|+.++++.|.+.+.+         . ..+..|+||||+||..|+.++|+.|+        ++|++++  
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n---------~-~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn--   68 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN---------I-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--   68 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT---------T-CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC---------c-CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc--
Confidence            489986655 5667777777776654         2 12246999999999999999998775        4566655  


Q ss_pred             CCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC--Cc
Q 045393          106 GPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE--SL  183 (580)
Q Consensus       106 ~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~--~~  183 (580)
                                 .+|.+|+||||+|++.|+.+++++|+++|++++ ..+..|.||++.|+..++.++.+.+......  ..
T Consensus        69 -----------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  136 (277)
T d2fo1e1          69 -----------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  136 (277)
T ss_dssp             -----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             -----------ccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccc
Confidence                       578999999999999999999999999999877 5788899999999999999988888654321  11


Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhc-------hhcccccC
Q 045393          184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES-------KRLAYKRD  256 (580)
Q Consensus       184 ~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-------~~~~~~~~  256 (580)
                      +..+. .+.++.+.+...+..+..                               ..++.+.+..       .......+
T Consensus       137 ~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  184 (277)
T d2fo1e1         137 EELDR-NGMTALMIVAHNEGRDQV-------------------------------ASAKLLVEKGAKVDYDGAARKDSEK  184 (277)
T ss_dssp             SCCCT-TSCCHHHHHHHSCSTTHH-------------------------------HHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             ccccc-ccchhHHHHHhccccccc-------------------------------ccccccccccccccccccccccccc
Confidence            12222 444555554444332211                               1111222111       11123456


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393          257 CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA  336 (580)
Q Consensus       257 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A  336 (580)
                      ..|.||||.++..++.+++++++.......+.+|..|+||||+|++.|+.+++++|+++|   +++|.+|.+|+||||+|
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g---adin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLA  261 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHH
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc---CCCCCcCCCCCCHHHHH
Confidence            789999999999999999998887766668899999999999999999999999999984   55999999999999999


Q ss_pred             HhcCChhHHHHhhcC
Q 045393          337 AMGLHSDVVFTLSRH  351 (580)
Q Consensus       337 ~~~~~~~~~~~Ll~~  351 (580)
                      +++|+.+++++|++.
T Consensus       262 ~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         262 QANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHh
Confidence            999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=255.57  Aligned_cols=226  Identities=22%  Similarity=0.262  Sum_probs=183.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc--cccc
Q 045393           77 ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS--YINK  154 (580)
Q Consensus        77 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~  154 (580)
                      +||||.||+.|+.++++.|++..+..            +..+|.+|.||||+|+..|+.+++++|+++|++++.  ..+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~   68 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSL------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD   68 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGG------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCc------------ccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccc
Confidence            48999999999999999888865432            335788899999999999999999999988877642  2344


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHH
Q 045393          155 AYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA  234 (580)
Q Consensus       155 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~  234 (580)
                      .|.+|+++++..+..++++.++..+..                                  ......+..+.|+++.++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~l~~~~~  114 (229)
T d1ixva_          69 SGWTPFHIACSVGNLEVVKSLYDRPLK----------------------------------PDLNKITNQGVTCLHLAVG  114 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHSSSSC----------------------------------CCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc----------------------------------ccccccccccccccccccc
Confidence            556666666666666665555544421                                  1133456678899999999


Q ss_pred             cCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 045393          235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR  314 (580)
Q Consensus       235 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  314 (580)
                      .++.++++.|++.+... ...+..|+||||+|+..|+.+++++|++.++..++.+|.+|+||||+|+.+|+.+++++|++
T Consensus       115 ~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         115 KKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHH
Confidence            99999999999999877 66788999999999999999999999999987789999999999999999999999999996


Q ss_pred             CcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393          315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN  355 (580)
Q Consensus       315 ~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d  355 (580)
                      ..  +++++.+|.+|+||||+|+.   .+++++|++ +|+|
T Consensus       194 ~~--gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~-~g~d  228 (229)
T d1ixva_         194 KY--GAEYDLVDNKGAKAEDVALN---EQVKKFFLN-NVVD  228 (229)
T ss_dssp             HH--CCCSCCCCTTSCCTGGGCSC---HHHHHHHHH-HCCC
T ss_pred             hc--CCCCCCcCCCCCCHHHHHhh---HHHHHHHHH-cCCC
Confidence            41  45699999999999999984   478899986 4776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.7e-33  Score=270.25  Aligned_cols=236  Identities=22%  Similarity=0.240  Sum_probs=159.1

Q ss_pred             CCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393           32 PGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL  111 (580)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  111 (580)
                      .++.|+|+.||..|+.++|++|+++|++         ++.+|.+|.||||+|+..|+.+++++|++++.+..        
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad---------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~--------  100 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD---------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN--------  100 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC---------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC---------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc--------
Confidence            3456899999999999999999999988         88899999999999999999999999999988754        


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393          112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                           ..+..+.|||+.|+..++.++++.|+++|.... ..+..+.+|+++|+..+..+.++.++...........    
T Consensus       101 -----~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~----  170 (291)
T d1s70b_         101 -----QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR----  170 (291)
T ss_dssp             -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHH----
T ss_pred             -----cccccccccccccccccccchhhcccccCcccc-cccccCccccccccccccchhcccccccccccccccc----
Confidence                 357788999999999999999999999987665 5688889999999988888888888866432211000    


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK  271 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  271 (580)
                          .... ..........+..........+..|.||||.|+..|+.++++.|++.|+++ +.++..|.||||+|+..|+
T Consensus       171 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~  244 (291)
T d1s70b_         171 ----KEEE-RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGK  244 (291)
T ss_dssp             ----HHHH-HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             ----cccc-ccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCC
Confidence                0000 000111111222222223334445555555555555555555555555544 4445555555555555555


Q ss_pred             HHHHHHHHHhCCCccccccCCCCCHHHHHH
Q 045393          272 LKVLKLLINKYPDAIEIRNNSDRSILHVAA  301 (580)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  301 (580)
                      .+++++|+++|++ ++.+|..|+||||+|+
T Consensus       245 ~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         245 EEACRILVENLCD-MEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCTTTSCC
T ss_pred             HHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence            5555555555555 4555555555555554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=6.1e-33  Score=268.72  Aligned_cols=244  Identities=21%  Similarity=0.262  Sum_probs=182.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Q 045393           74 LMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN  153 (580)
Q Consensus        74 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  153 (580)
                      ..+.|||+.||+.|+.++|++|+++|++++             .+|.+|.||||+|+..|+.+++++|++++.+.. ..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-------------~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~  103 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADIN-------------YANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPD  103 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCC-------------ccCCCCCcHHHHHHhcCCceeeeeecccccccc-ccc
Confidence            456799999999999999999999999876             478999999999999999999999999998765 467


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 045393          154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA  233 (580)
Q Consensus       154 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~  233 (580)
                      ..+.+||+.++..++.++++.|++++. .....+. .+.++++.|+..+..+.+..++...+.........+..+.+   
T Consensus       104 ~~~~~~L~~a~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~---  178 (291)
T d1s70b_         104 NEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML---  178 (291)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---
T ss_pred             ccccccccccccccccchhhcccccCc-ccccccc-cCccccccccccccchhcccccccccccccccccccccccc---
Confidence            788999999999999999999999874 3334444 78888888888888888888886554322211111111111   


Q ss_pred             HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393          234 ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL  313 (580)
Q Consensus       234 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  313 (580)
                          ......+..... .....+..|.||||.|+..|+.++++.|+++|++ ++.+|..|+||||+|++.|+.+++++|+
T Consensus       179 ----~~~~~~~~~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl  252 (291)
T d1s70b_         179 ----RDARQWLNSGHI-NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV  252 (291)
T ss_dssp             ----HHHHHHHHHTCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ----ccchhhhccccc-ccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                112222222222 2244566788888888888888888888888887 7778888888888888888888888888


Q ss_pred             cCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       314 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      ++|   +++|.+|.+|+||||+|++    +++++|.
T Consensus       253 ~~G---adv~~~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         253 ENL---CDMEAVNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             HTT---CCTTCCCTTSCCTTTSCCS----GGGHHHH
T ss_pred             HCC---CCCCCcCCCCCCHHHHHHH----HHHHHHH
Confidence            874   4478888888888888864    4444443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=233.92  Aligned_cols=222  Identities=24%  Similarity=0.297  Sum_probs=146.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHh----cCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 045393           75 MDETALHIAARIGDRAIVSEIMK----YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~  150 (580)
                      +|+||||+||+.|+.++++.|++    .|++++             .+|.+|.||||+|+..|+.+++++|+++|++.+ 
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-------------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------------ccCCCCCccceehhccccccccccccccccccc-
Confidence            58999999999999999998885    555554             578899999999999999999999999998776 


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393          151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~  230 (580)
                      .....+.++++.|...++.++++............                                .+.......++|+
T Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~  115 (228)
T d1k1aa_          68 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--------------------------------LEARNYDGLTALH  115 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC--------------------------------TTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhcccccccc--------------------------------ccccccccccccc
Confidence            46777888999999988888888777655321110                                1112223344555


Q ss_pred             HHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHH
Q 045393          231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS  310 (580)
Q Consensus       231 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  310 (580)
                      .+.........+.|.....+........+.+|++.|+..+..++++.+++++.+ .+.+|..|+||||+|+.+|+.++++
T Consensus       116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~  194 (228)
T d1k1aa_         116 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVR  194 (228)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             cccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHH
Confidence            555555555555555544444344444555666666666666666666665555 5555666666666666666666666


Q ss_pred             HHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393          311 FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF  346 (580)
Q Consensus       311 ~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  346 (580)
                      +|+++|   +++|.+|.+|+||||+|+++|+.+++|
T Consensus       195 ~Ll~~G---ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         195 TLVRSG---ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTT---CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHCC---CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            666553   335666666666666666666555553

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.8e-29  Score=229.60  Aligned_cols=222  Identities=21%  Similarity=0.260  Sum_probs=173.7

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHh----hCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCc
Q 045393           33 GGNAVLHMAVRFRNQQVIREILR----QQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPA  108 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  108 (580)
                      +|+||||+||..|+.++++.|++    .|.+         ++.+|..|+||||+|+..|+.++++.|+++|++.+     
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~---------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-----   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-----   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC---------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC---------CCccCCCCCccceehhccccccccccccccccccc-----
Confidence            69999999999999999999986    5555         88999999999999999999999999999998865     


Q ss_pred             chhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393          109 PVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL  188 (580)
Q Consensus       109 ~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  188 (580)
                              ..+..|.++++.|...++.++++.+...........+                               ....
T Consensus        68 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~  108 (228)
T d1k1aa_          68 --------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-------------------------------ARNY  108 (228)
T ss_dssp             --------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-------------------------------CCCT
T ss_pred             --------ccccccccccccccccccccchhhhhhcccccccccc-------------------------------cccc
Confidence                    4677899999999999999999988876543321111                               0111


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHH
Q 045393          189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE  268 (580)
Q Consensus       189 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  268 (580)
                       ...++++.+...........+...........+..+.++++.|+..+..++++.+++.+... +.+|..|.||||+|+.
T Consensus       109 -~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         109 -DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASG  186 (228)
T ss_dssp             -TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHH
T ss_pred             -ccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHH
Confidence             34455555555555555555555555545555667778888888888888888888887766 5667788888888888


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHH
Q 045393          269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS  310 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  310 (580)
                      .|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.|++|
T Consensus       187 ~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            8888888888888888 7888888888888888888887764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-29  Score=235.08  Aligned_cols=198  Identities=18%  Similarity=0.230  Sum_probs=160.6

Q ss_pred             CCCcHHHHHHHhCCHHHH----HHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 045393           75 MDETALHIAARIGDRAIV----SEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS  150 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v----~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~  150 (580)
                      +|+||||+|+..|+.+++    +.+...+++++             .+|.+|+||||+|+..|+.+++++|++.|++++ 
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-------------~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-------------FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-------------CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-------------cCCCCCCcccccccccccccccccccccccccc-
Confidence            589999999999986554    44555565554             588999999999999999999999999999886 


Q ss_pred             ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393          151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH  230 (580)
Q Consensus       151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~  230 (580)
                      ..|..|.+||+.++..++.++++.+++.+.....                              ..........|.||||
T Consensus        67 ~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          67 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL------------------------------HSILKATNYNGHTCLH  116 (221)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS------------------------------SCGGGCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccccchhhhhcccccc------------------------------cccccccccccchhhh
Confidence            5788999999999999999999999887642111                              1113444556788999


Q ss_pred             HHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHH
Q 045393          231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS  310 (580)
Q Consensus       231 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  310 (580)
                      .|+..++.+.+++|++.+.......+.+|.||||+|++.|+.+++++|+++|+| ++.+|.+|+||||+|+.+++.++++
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999888877666667889999999999999999999999988 8888999999999999999999999


Q ss_pred             HHhcCcc
Q 045393          311 FILRSPE  317 (580)
Q Consensus       311 ~Ll~~~~  317 (580)
                      +|++...
T Consensus       196 ~l~~~~~  202 (221)
T d1iknd_         196 QLGQLTL  202 (221)
T ss_dssp             HHHTTSC
T ss_pred             HHHHcCC
Confidence            8888743

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.5e-28  Score=225.15  Aligned_cols=207  Identities=23%  Similarity=0.310  Sum_probs=128.6

Q ss_pred             HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCc
Q 045393           89 RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARL  168 (580)
Q Consensus        89 ~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~  168 (580)
                      .|+|++|+++|++++.            ..|.+|.||||+||+.|+.+++++|++.|++++ ..+..+.++++.++..++
T Consensus         2 ~~~v~~Ll~~g~din~------------~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~   68 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA------------TMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADA   68 (209)
T ss_dssp             HHHHHHHHHHHHHHHH------------HHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCcCc------------CcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccc
Confidence            5789999999988752            257889999999999999999999999998876 567788888888888888


Q ss_pred             HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhc
Q 045393          169 NDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES  248 (580)
Q Consensus       169 ~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~  248 (580)
                      .................... .+.++.+.+.........+.|...+.. ++..+..|.|||+.++..+..++++.+++.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~  146 (209)
T d1ot8a_          69 MGVFQILLRNRATNLNARMH-DGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHH  146 (209)
T ss_dssp             HHHHHHHHTCTTCCTTCCCT-TCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccccc-cccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecccc
Confidence            77766666554333222222 455555555555555555544444332 4444555555555555555555555555555


Q ss_pred             hhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHH
Q 045393          249 KRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI  312 (580)
Q Consensus       249 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  312 (580)
                      .+. +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.++|++|
T Consensus       147 ~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         147 ANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccc-cccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            444 34444555555555555555555555555555 445555555555555555555555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-29  Score=230.49  Aligned_cols=199  Identities=20%  Similarity=0.289  Sum_probs=147.5

Q ss_pred             CCCchhhHHHhcCCHHH----HHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCc
Q 045393           33 GGNAVLHMAVRFRNQQV----IREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPA  108 (580)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  108 (580)
                      +|+||||+|+..|+.++    ++++...+.+         ++.+|..|+||||+|+..|+.+++++|+++|++++     
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~---------in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-----   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF---------LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC---------CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC---------cccCCCCCCcccccccccccccccccccccccccc-----
Confidence            59999999999999655    4455556665         88999999999999999999999999999999876     


Q ss_pred             chhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393          109 PVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL  188 (580)
Q Consensus       109 ~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  188 (580)
                              .+|..|.||||+|+..++.++++.|++.+........                             ......
T Consensus        67 --------~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------~~~~~~  109 (221)
T d1iknd_          67 --------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI-----------------------------LKATNY  109 (221)
T ss_dssp             --------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG-----------------------------GGCCCT
T ss_pred             --------ccccccccccccccccccccccchhhhhccccccccc-----------------------------cccccc
Confidence                    4788999999999999999999999998765432110                             011111


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHH
Q 045393          189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE  268 (580)
Q Consensus       189 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  268 (580)
                       .|.+|+|.|+..++.+.++.++..+.......+.+|.||||.|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus       110 -~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         110 -NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWG  187 (221)
T ss_dssp             -TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTT
T ss_pred             -ccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcc-cccCCCCCCHHHHHHH
Confidence             45566666666666666666666655544444566777777777777777777777777775 6667777777777777


Q ss_pred             cCcHHHHHHHHHhCCC
Q 045393          269 NGKLKVLKLLINKYPD  284 (580)
Q Consensus       269 ~g~~~~v~~Ll~~~~~  284 (580)
                      .++.+++++|++...+
T Consensus       188 ~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         188 RPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             SSCHHHHHHHHTTSCG
T ss_pred             CCCHHHHHHHHHcCCc
Confidence            7777777777776654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.9e-28  Score=221.70  Aligned_cols=207  Identities=21%  Similarity=0.267  Sum_probs=187.1

Q ss_pred             HHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhC
Q 045393          135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN  214 (580)
Q Consensus       135 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~  214 (580)
                      .|+|++|+++|++++...|.+|.||||+|+..|+.+++++|++.++. ++..+. .+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDN-TGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-cccccc-ccccccccccccccccccccccccc
Confidence            58999999999998766789999999999999999999999999854 445555 8899999999999998887777776


Q ss_pred             CccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC
Q 045393          215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR  294 (580)
Q Consensus       215 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  294 (580)
                      ..........|.++.+.+.........+.|.+.+.+. +.++..|.|||+.++..+..++++.+++.+.+ ++.+|..|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~  157 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDE  157 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccc
Confidence            6666667778999999999999999999999998877 67788999999999999999999999999998 899999999


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      ||||+|+.+|+.+++++|+++|   +++|.+|.+|+||||+|+++|+.+++++|
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~~g---ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLDNF---ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccchhccccHHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999984   55999999999999999999999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.8e-30  Score=256.39  Aligned_cols=130  Identities=15%  Similarity=0.198  Sum_probs=82.5

Q ss_pred             cCCCCCchhhHHHhcCCHHHHHH---HHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCC
Q 045393           30 SSPGGNAVLHMAVRFRNQQVIRE---ILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVG  106 (580)
Q Consensus        30 ~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  106 (580)
                      ++..|.||||+||.+|+.+++++   |++.|++         ++.+|..|+||||+||++|+.++|++|+++|++++.. 
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~---------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-  155 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA-  155 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH-
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc---------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-
Confidence            45567777777777777666554   5666666         6667777777777777777777777777777665421 


Q ss_pred             CcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc--ccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 045393          107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS--YINKAYQTPLSIAIDARLNDIACFIIDKS  179 (580)
Q Consensus       107 ~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  179 (580)
                                ..+.+|.||||+|+++|+.++|++|++.|+....  ..+.++.+|++.|+.+|+.+++++|++.+
T Consensus       156 ----------~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         156 ----------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             ----------HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             ----------ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence                      1234567777777777777777777777664421  12334456666666667777777776654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=7.3e-30  Score=252.04  Aligned_cols=273  Identities=12%  Similarity=0.057  Sum_probs=195.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHH---HHHcCCCCCcccc
Q 045393           77 ETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRI---LVEKDSVPSSYIN  153 (580)
Q Consensus        77 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~---Ll~~~~~~~~~~~  153 (580)
                      .++++.+...+..++.+.+...+.+.+...  ......+..++..|.||||+|+++|+.+++++   |++.|++++ ..+
T Consensus        47 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~  123 (346)
T d2ajaa1          47 AIHIFLPGTKNMEQVRQLLCLYYAHYNRNA--KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQ  123 (346)
T ss_dssp             HHHHCCCCSSHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---C
T ss_pred             HHHHHHHhhccHHHHHHHHHHcchhhccch--hhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccC
Confidence            344444445555677777777665544321  12234456788899999999999999887766   788898877 578


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCcc--ccccCCCCChHHHH
Q 045393          154 KAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL--IDRLDWHQRNPLHY  231 (580)
Q Consensus       154 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~t~L~~  231 (580)
                      ..|.||||+|+.+|+.+++++|++.+++.........|.||||.|+.+|+.+++++|++.++..  .+..+.+|.||++.
T Consensus       124 ~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~  203 (346)
T d2ajaa1         124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA  203 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhH
Confidence            8999999999999999999999999864322211126899999999999999999999988653  33445667788899


Q ss_pred             HHHcCChHHHHHHHHhchhcccc------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-ccccc-------CCCCCHH
Q 045393          232 AAASGNVKMAQRLLEESKRLAYK------RDCNGETPLHLAAENGKLKVLKLLINKYPDA-IEIRN-------NSDRSIL  297 (580)
Q Consensus       232 A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-~~~~d-------~~g~t~L  297 (580)
                      |+..|+.+++++|++.|++....      ....+.++++.+...+..+....+.....+. .+..+       ..+.+++
T Consensus       204 A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l  283 (346)
T d2ajaa1         204 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL  283 (346)
T ss_dssp             HSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHH
Confidence            99999999999999998765321      1223345666665555555444443332221 11111       1234788


Q ss_pred             HHHHHcCCHHHHHHHhcCcchhhh--cccccCCCCcHHHHHHhcCChhHHHHhhcCc
Q 045393          298 HVAAKHGNWNIVSFILRSPEMENL--INLVDRNGNTPLHLAAMGLHSDVVFTLSRHK  352 (580)
Q Consensus       298 h~A~~~~~~~iv~~Ll~~~~~~~~--~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~  352 (580)
                      +.|+..++.+++++|++.+.....  .+..+.+|+||||+|++.|+.+++++||...
T Consensus       284 ~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         284 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             HHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            999999999999999998654332  3455678999999999999999999999753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=193.64  Aligned_cols=152  Identities=26%  Similarity=0.349  Sum_probs=139.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393          193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL  272 (580)
Q Consensus       193 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  272 (580)
                      ..|+.|+..|+.++++.|++.++..++..|..|+||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            45999999999999999999887779999999999999886 58899999999999887 67788999999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       273 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ++++.+++++++ ++.+|..|+||||+|++.|+.+++++|++    +.+++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA----ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT----TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccccCCCCeeeccccccccccccccccc----cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999998 88999999999999999999999999884    345899999999999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=188.65  Aligned_cols=154  Identities=23%  Similarity=0.276  Sum_probs=107.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      .+||.||..|++++++.|+++|...+..|.+|.||||+|+ .|+.|++++|+++|++         ++.++..|.+||+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~---------~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN---------PDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC---------TTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccc---------cccccccCcccccc
Confidence            3577777777777777777776666666777777777664 5677777777777766         66667777777777


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      ++..++.+.++.|++.+.+.+             ..|..|.+|||+|+..++.+++++|+++++......|..|+||||+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccccc-------------ccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            777777777777777666543             3566677777777777777777777777765445566777777777


Q ss_pred             HHHcCcHHHHHHHHhcC
Q 045393          163 AIDARLNDIACFIIDKS  179 (580)
Q Consensus       163 A~~~~~~~~v~~Ll~~~  179 (580)
                      |+..++.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            77777777777777654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-24  Score=186.40  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=132.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhh-cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH   81 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh   81 (580)
                      ..|+.||..||.+.+++|+++ +...+..|..|+||||+|+. |+.+++++|++++.+         ++..+..|.+|++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~---------~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS---------PNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC---------TTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc---------ccccccccccccc
Confidence            469999999999999999986 45566688999999998874 889999999999888         7888889999999


Q ss_pred             HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393           82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS  161 (580)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  161 (580)
                      .++..++.++++.+++++++++             .+|.+|.||||+|++.|+.+++++|+ .|++++ ..|..|+||||
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n-------------~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~  138 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVN-------------VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLE  138 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHH
T ss_pred             cccccccccccccccccccccc-------------cccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHH
Confidence            9999999999999999988765             47888999999999999999999887 566665 57889999999


Q ss_pred             HHHHcCcHHHHHHHHhc
Q 045393          162 IAIDARLNDIACFIIDK  178 (580)
Q Consensus       162 ~A~~~~~~~~v~~Ll~~  178 (580)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhh
Confidence            99999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=186.35  Aligned_cols=154  Identities=14%  Similarity=0.187  Sum_probs=94.3

Q ss_pred             chhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           36 AVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        36 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      ++||+||..|+.++|++|+++|++         ++.+|..|.||||+|+ .|+.+++++|+++|++++            
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~------------   60 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD------------   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------cCccCCcccccccccc-cccccccccccccccccc------------
Confidence            566777777777777777776666         5666666777776554 566677777776666543            


Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHH
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI  195 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L  195 (580)
                       .++..|.+|++.++..++.+.++.|++.+.+.. ..+..|.+|++.|+..++.+++++|++++                
T Consensus        61 -~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~----------------  122 (156)
T d1ihba_          61 -LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHT----------------  122 (156)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHS----------------
T ss_pred             -cccccCccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc----------------
Confidence             355666666666666666666666666665543 34455555555555555555555555554                


Q ss_pred             HHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhc
Q 045393          196 HFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES  248 (580)
Q Consensus       196 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~  248 (580)
                                         +.+.+.+|.+|+||||+|++.++.+++++|+++|
T Consensus       123 -------------------~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         123 -------------------ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             -------------------CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             -------------------cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                               4334455555566666666666666666665554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.6e-24  Score=182.42  Aligned_cols=150  Identities=19%  Similarity=0.288  Sum_probs=119.6

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK  271 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  271 (580)
                      .|||+.|+..|+.++++.|+++++. .+ .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            3778888888888888888887764 33 5778888888888888888888888777655 4456667788888888888


Q ss_pred             HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393          272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL  348 (580)
Q Consensus       272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L  348 (580)
                      .++++++..++.+ .+.+|.+|+||||+|+..|+.+++++|++.|   +++|.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g---ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccc---cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            8888888888887 6778888888888888888888888888874   45788888888888888888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.7e-23  Score=177.02  Aligned_cols=149  Identities=27%  Similarity=0.361  Sum_probs=106.3

Q ss_pred             HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393            3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI   82 (580)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~   82 (580)
                      ++|+.|++.|+.++++.|++++.... .+..|.||||+|+..++.++++.++.....         ....+..+.++++.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~   73 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---------RDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccc---------cccccccccccccc
Confidence            56777777777777777777765444 567777777777777777777777776655         44556666777777


Q ss_pred             HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393           83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI  162 (580)
Q Consensus        83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  162 (580)
                      ++...+.++++++.+++.+.+             .+|.+|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+
T Consensus        74 ~~~~~~~~~~~~l~~~~~~~~-------------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~  139 (153)
T d1awcb_          74 AASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDI  139 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             ccccccceeeecccccCCccc-------------cccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHH
Confidence            777777777777777766543             356677777777777777777777777777665 457777777777


Q ss_pred             HHHcCcHHHHHHH
Q 045393          163 AIDARLNDIACFI  175 (580)
Q Consensus       163 A~~~~~~~~v~~L  175 (580)
                      |+.+|+.+++++|
T Consensus       140 A~~~g~~eiv~lL  152 (153)
T d1awcb_         140 SIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHhC
Confidence            7777777777654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.8e-24  Score=206.20  Aligned_cols=180  Identities=17%  Similarity=0.079  Sum_probs=112.9

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCh---HHHHHHHHhchhcccccCCCCCcHHHHH
Q 045393          190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV---KMAQRLLEESKRLAYKRDCNGETPLHLA  266 (580)
Q Consensus       190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  266 (580)
                      .|.||||+|+..|+.++++.|++.+.+ ++.+|..|+||||.|+..++.   +.++.+++........+|..|+||||.+
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~  184 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  184 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH
Confidence            677777777777777777777776654 677777777777777765541   2222333322222345567777888877


Q ss_pred             HHcCc------------HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHH
Q 045393          267 AENGK------------LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH  334 (580)
Q Consensus       267 ~~~g~------------~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh  334 (580)
                      +..+.            ..+++++.+.+..........+.++++.+........+..+.........+|.+|.+|+||||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh  264 (301)
T d1sw6a_         185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  264 (301)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHH
Confidence            65432            124455666666555666677777777777666655555433221223458999999999999


Q ss_pred             HHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393          335 LAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE  373 (580)
Q Consensus       335 ~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~  373 (580)
                      +|++.|+.+++++|+++ |+|++++|+  .|+||||+|.
T Consensus       265 ~A~~~g~~~iv~~Ll~~-GAd~~~~n~--~G~Tpl~~A~  300 (301)
T d1sw6a_         265 IAARLGNISIVDALLDY-GADPFIANK--SGLRPVDFGA  300 (301)
T ss_dssp             HHHHHCCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGTC
T ss_pred             HHHHcCCHHHHHHHHHC-CCCCCCCCC--CCCCHHHHcC
Confidence            99999999999999975 999999999  9999999873

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.6e-23  Score=199.93  Aligned_cols=185  Identities=19%  Similarity=0.224  Sum_probs=103.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcH-------HHHHHHHhcCCCCcCCCCCCCC
Q 045393          119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN-------DIACFIIDKSPESLNTTRLPDE  191 (580)
Q Consensus       119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~-------~~v~~Ll~~~~~~~~~~~~~~~  191 (580)
                      |.+|+||||+|+..|+.++|++|+++|++++ ..|..|+||||.|+..++.       ++++++.+    .....+. .|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~-~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDS-MN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECT-TC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhccc-cc
Confidence            7788889999888888888898888888877 5688888888888876542       22222221    1122222 45


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393          192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK  271 (580)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  271 (580)
                      +||||.++..+..+.                      ...+++.....+++.+.+.+..........+.++++.+.....
T Consensus       178 ~t~lh~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T d1sw6a_         178 RTILHHIIITSGMTG----------------------CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  235 (301)
T ss_dssp             CCHHHHHHHHHTSTT----------------------CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             CCHHHHHHHHhCccc----------------------cHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcch
Confidence            555555543221100                      0000000011244555666555444444455555555544433


Q ss_pred             HHHHH-----HHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHH
Q 045393          272 LKVLK-----LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA  337 (580)
Q Consensus       272 ~~~v~-----~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~  337 (580)
                      ...+.     .++...   ++.+|.+|+||||+|+++|+.+++++|++.   +++++.+|++|.||||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         236 DSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHcC
Confidence            33322     222222   567788888888888888888888888887   4448888888888888875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-23  Score=171.14  Aligned_cols=120  Identities=24%  Similarity=0.285  Sum_probs=93.3

Q ss_pred             CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC-CHHHHHHHc
Q 045393          225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR-SILHVAAKH  303 (580)
Q Consensus       225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~  303 (580)
                      +.++||.|+..|+.+++++|+++|+++ +.++..|.||+|.|+ .|+.+++++|+++|++ ++.+|..|. ||||+|+++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            457788888888888888888888776 667778888887654 6788888888888887 677776665 588888888


Q ss_pred             CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393          304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR  350 (580)
Q Consensus       304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~  350 (580)
                      |+.+++++|+++|   .+++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~g---a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHT---CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc---cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888888773   4478888888888888888888888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.5e-23  Score=171.71  Aligned_cols=105  Identities=30%  Similarity=0.295  Sum_probs=51.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393          261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL  340 (580)
Q Consensus       261 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~  340 (580)
                      |||++|+++|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++.+   .++|.+|.+|+||||+|+.+|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g---~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS---CTTTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccccc---ceeeecccccccchhhhhhcC
Confidence            445555555555555555554444 4444445555555555555555555555442   224444555555555555555


Q ss_pred             ChhHHHHhhcCcccccccccccCCCCCHHHHH
Q 045393          341 HSDVVFTLSRHKSVNIRAKNHSARSNTALEIA  372 (580)
Q Consensus       341 ~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a  372 (580)
                      +.+++++|+++ |+|++.+|.  +|+|||++|
T Consensus        80 ~~~~v~~Ll~~-Gad~~~~d~--~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSK-GADKTVKGP--DGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTT-CCCSSSSSS--STCCCCCTC
T ss_pred             chhhhhhhhcc-cccceeeCC--CCCCHHHHH
Confidence            55555554432 445555544  555555444

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=167.90  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=108.2

Q ss_pred             CCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhh
Q 045393           34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLES  113 (580)
Q Consensus        34 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  113 (580)
                      +.++||+|+..|+.++|++|+++|++         ++.+|..|.||||.|+ .|+.+++++|+++|++++          
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad---------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~----------   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN---------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN----------   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC---------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC----------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc---------cccccccccccccccc-cccccccccccccccccc----------
Confidence            56899999999999999999999988         8899999999999775 799999999999999876          


Q ss_pred             hhhccCCCCC-cHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHh
Q 045393          114 LFRMTDIEGN-TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID  177 (580)
Q Consensus       114 ~l~~~d~~g~-tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  177 (580)
                         .++..|. ||||+|++.|+.+++++|+++|++++ ..|..|+||||+|+.+|+.+++++|++
T Consensus        63 ---~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          63 ---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ---CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ---cccccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence               3555554 79999999999999999999999887 578999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=5.4e-23  Score=168.41  Aligned_cols=115  Identities=21%  Similarity=0.319  Sum_probs=105.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCC
Q 045393          226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN  305 (580)
Q Consensus       226 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  305 (580)
                      .|||++|++.|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            48999999999999999999999987 78899999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393          306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS  349 (580)
Q Consensus       306 ~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll  349 (580)
                      .+++++|+++|   ++++.+|.+|+||||+|.    .+.++.||
T Consensus        81 ~~~v~~Ll~~G---ad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          81 VSCVKLLLSKG---ADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             CHHHHHHHTTC---CCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             hhhhhhhhccc---ccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            99999999994   559999999999999983    24566665

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-22  Score=166.67  Aligned_cols=122  Identities=24%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             chhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhh
Q 045393           36 AVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLF  115 (580)
Q Consensus        36 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l  115 (580)
                      ++|+.||..|+.++|++|+++|++         ++.+|.+|+||||+|+..|+.+++++|+++|++++            
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d---------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~------------   61 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD---------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN------------   61 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS---------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC---------ccccccccccccccccccccccccccccccccccc------------
Confidence            679999999999999999999998         89999999999999999999999999999998865            


Q ss_pred             hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH--HHcCcHHHHHHHHhcC
Q 045393          116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDIACFIIDKS  179 (580)
Q Consensus       116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~~  179 (580)
                       .+|.+|+||||+|+.+|+.+++++|+++|++++...+..++||++++  ...|+.+++++|++..
T Consensus        62 -~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          62 -AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             -cccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence             57899999999999999999999999999998866566788887765  5678899999998753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=161.95  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=100.4

Q ss_pred             hHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCH
Q 045393          227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW  306 (580)
Q Consensus       227 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  306 (580)
                      ++|+.|+..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            5788899999999999999998887 77888899999999999999999999999888 788899999999999999999


Q ss_pred             HHHHHHhcCcchhhhcccccC-CCCcHHHHH--HhcCChhHHHHhhc
Q 045393          307 NIVSFILRSPEMENLINLVDR-NGNTPLHLA--AMGLHSDVVFTLSR  350 (580)
Q Consensus       307 ~iv~~Ll~~~~~~~~~n~~d~-~G~T~Lh~A--~~~~~~~~~~~Ll~  350 (580)
                      +++++|+++|   ++++.++. +|+||++++  ...|+.+++++|+.
T Consensus        81 ~~v~~Ll~~g---a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcC---CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999884   44777664 577877665  46688899988874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.5e-20  Score=160.77  Aligned_cols=124  Identities=18%  Similarity=0.228  Sum_probs=99.2

Q ss_pred             HHHHHHHcCCHHHHHHHhhhcCccc------ccCCCCCchhhHHHhc---CCHHHHHHHHhhCchhHHhhhhhhcccccC
Q 045393            4 ELLEVLRHGDEYKIKQLALRQDIFS------TSSPGGNAVLHMAVRF---RNQQVIREILRQQDFIALRLHYSLLRQKNL   74 (580)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~------~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   74 (580)
                      .|+.|++.+|+..+..++..+....      ..+..|+||||+|++.   |+.+++++|++.|++         ++.+|.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---------in~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---------LDKQTG   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---------TTCCCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---------hhhhhh
Confidence            5778889999999988887763222      2356788888888864   678888888888887         788888


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393           75 MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS  149 (580)
Q Consensus        75 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  149 (580)
                      .|+||||+|+..|+.+++++|+++|++++             .+|.+|.||||+|++.|+.+++++|++.++...
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-------------~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIE-------------IANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             hhccccccccccccccccccccccCcccc-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            88888888888888888888888888765             478888888888888888888888888765443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.6e-20  Score=157.61  Aligned_cols=119  Identities=20%  Similarity=0.295  Sum_probs=88.9

Q ss_pred             HHHHHHcCChHHHHHHHHhchhccc-----ccCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393          229 LHYAAASGNVKMAQRLLEESKRLAY-----KRDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRNNSDRSILHVA  300 (580)
Q Consensus       229 L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  300 (580)
                      |..|++.++...+..++..|.+...     ..+..|+||||+|++.   |+.+++++|+++|++ ++.+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccccc
Confidence            4456677777777777766654421     1255678888888863   567888888888887 788888888888888


Q ss_pred             HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393          301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH  351 (580)
Q Consensus       301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~  351 (580)
                      ++.|+.+++++|+++   +++++.+|.+|.||||+|++.|+.+++++|++.
T Consensus        89 ~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccc---CccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            888888888888887   444788888888888888888888888888764