Citrus Sinensis ID: 045419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccEEccccccccccccccccccHHHHHHHHHHcccEEEEcccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEEHcccccHHHHHHHccHHHHHHHHHHHHEccccEEEEcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIEsdvfipsysgnMARAVEVHLMLR
Flexible Loop (DISEMBL)
rlrpvvstlrnyssatkqgklasVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Low Complexity Region (SEG)
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Disordered region (IsUnstruct)
***************************EPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH****
Disordered Region (DISOPRED)
***P**STLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLML*
Disordered Region (DISEMBL)
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Disordered Region (DISPRO)
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RLRPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLMLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
255545806	536	conserved hypothetical protein [Ricinus	0.671	0.087	0.936	6e-18
449469833	534	PREDICTED: DUF246 domain-containing prot	0.671	0.088	0.936	8e-18
225459219	730	PREDICTED: DUF246 domain-containing prot	0.671	0.064	0.893	4e-17
147804836	513	hypothetical protein VITISV_036923 [Viti	0.671	0.091	0.893	5e-17
356552922	525	PREDICTED: DUF246 domain-containing prot	0.671	0.089	0.914	5e-17
302141996	536	unnamed protein product [Vitis vinifera]	0.671	0.087	0.893	5e-17
356500719	514	PREDICTED: DUF246 domain-containing prot	0.671	0.091	0.914	5e-17
357489755	552	DUF246 domain-containing protein [Medica	0.657	0.083	0.934	2e-16
297850698	566	hypothetical protein ARALYDRAFT_472486 [	0.785	0.097	0.727	8e-16
224066985	424	predicted protein [Populus trichocarpa]	0.785	0.129	0.690	2e-15

>gi|255545806|ref|XP_002513963.1| conserved hypothetical protein [Ricinus communis] gi|223547049|gb|EEF48546.1| conserved hypothetical protein [Ricinus communis]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLASVEELEPF+NHASQMAALDYIVS+ESDVFIPSYSGNMARAVE H
Sbjct: 392 KLASVEELEPFINHASQMAALDYIVSVESDVFIPSYSGNMARAVEGH 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469833|ref|XP_004152623.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449503909|ref|XP_004162223.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLASVEELEPFVNHASQMAALDYIVS+ESDVF+PSYSGNMARAVE H
Sbjct: 392 KLASVEELEPFVNHASQMAALDYIVSVESDVFVPSYSGNMARAVEGH 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459219|ref|XP_002284058.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLAS++ELEPF NHASQMAALDYIVS+ESDVFIPSYSGNMARAVE H
Sbjct: 393 KLASIDELEPFANHASQMAALDYIVSVESDVFIPSYSGNMARAVEGH 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804836|emb|CAN71444.1| hypothetical protein VITISV_036923 [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLAS++ELEPF NHASQMAALDYIVS+ESDVFIPSYSGNMARAVE H
Sbjct: 403 KLASIDELEPFANHASQMAALDYIVSVESDVFIPSYSGNMARAVEGH 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552922|ref|XP_003544811.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 45/47 (95%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLAS+EELEPF NHASQMAALDYIVSIESDVFIPSYSGNMA+AVE H
Sbjct: 382 KLASIEELEPFSNHASQMAALDYIVSIESDVFIPSYSGNMAKAVEGH 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141996|emb|CBI19199.3| unnamed protein product [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLAS++ELEPF NHASQMAALDYIVS+ESDVFIPSYSGNMARAVE H
Sbjct: 393 KLASIDELEPFANHASQMAALDYIVSVESDVFIPSYSGNMARAVEGH 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500719|ref|XP_003519179.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 45/47 (95%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           KLAS+EELEPF NHASQMAALDYIVSIESDVFIPSYSGNMA+AVE H
Sbjct: 382 KLASIEELEPFSNHASQMAALDYIVSIESDVFIPSYSGNMAKAVEGH 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489755|ref|XP_003615165.1| DUF246 domain-containing protein [Medicago truncatula] gi|355516500|gb|AES98123.1| DUF246 domain-containing protein [Medicago truncatula]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/46 (93%), Positives = 44/46 (95%)

Query: 21  LASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           LAS+EELEPF NHASQMAALDYIVSIESDVFIPSYSGNMARAVE H
Sbjct: 411 LASIEELEPFFNHASQMAALDYIVSIESDVFIPSYSGNMARAVEGH 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850698|ref|XP_002893230.1| hypothetical protein ARALYDRAFT_472486 [Arabidopsis lyrata subsp. lyrata] gi|297339072|gb|EFH69489.1| hypothetical protein ARALYDRAFT_472486 [Arabidopsis lyrata subsp. lyrata]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 48/55 (87%)

Query: 12  YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           +S  T +  LA+ EEL+PF+NH++QMAALDYIVS+ESDVFIPSYSGNMARAVE H
Sbjct: 422 FSMLTSKENLATSEELKPFMNHSTQMAALDYIVSVESDVFIPSYSGNMARAVEGH 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066985|ref|XP_002302312.1| predicted protein [Populus trichocarpa] gi|222844038|gb|EEE81585.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 47/55 (85%)

Query: 12  YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           Y     + KLAS+EELEPF NH++Q+AALDYI+S+ESDVF+P+YSGNMARAVE H
Sbjct: 288 YPMLMSKEKLASIEELEPFANHSTQLAALDYILSVESDVFMPTYSGNMARAVEGH 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2009467	565	AT1G22460 [Arabidopsis thalian	0.871	0.107	0.677	5.3e-15
TAIR|locus:2174754	522	AT5G64600 [Arabidopsis thalian	0.657	0.088	0.695	2.2e-11
TAIR|locus:2080285	638	AT3G54100 [Arabidopsis thalian	0.785	0.086	0.527	5.8e-10
TAIR|locus:2014869	499	AT1G14020 [Arabidopsis thalian	0.871	0.122	0.5	8.3e-10
TAIR|locus:2065563	638	AT2G37980 [Arabidopsis thalian	0.785	0.086	0.527	1.6e-09
TAIR|locus:2056981	508	AT2G03280 [Arabidopsis thalian	0.8	0.110	0.517	1.8e-09
TAIR|locus:2076552	512	AT3G02250 [Arabidopsis thalian	0.785	0.107	0.472	3.8e-09
TAIR|locus:2157096	652	AT5G35570 [Arabidopsis thalian	0.657	0.070	0.565	9.1e-09
TAIR|locus:2167311	559	AT5G63390 [Arabidopsis thalian	0.785	0.098	0.490	9.3e-09
TAIR|locus:2143181	508	AT5G15740 [Arabidopsis thalian	0.785	0.108	0.472	1.3e-08

TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query:     6 VSTLRN-YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVE 64
             ++ LR+ +S    + KLA+ EEL+ F+NH++QMAALDYIVSIESDVFIPSYSGNMARAVE
Sbjct:   414 LADLRSRFSMLMSKEKLATREELKTFMNHSTQMAALDYIVSIESDVFIPSYSGNMARAVE 473

Query:    65 VH 66
              H
Sbjct:   474 GH 475

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/46 (69%), Positives = 39/46 (84%)

Query:    21 LASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             LA  EEL+ F  HA++ AALDYI+S+ESDVF+PS+SGNMARAVE H
Sbjct:   387 LAGNEELKGFTGHATKTAALDYIISVESDVFVPSHSGNMARAVEGH 432

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query:    12 YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             Y +      LA+ EELEPF  + +++AALDYIV++ESDVF+ +Y GNMA+AV+ H
Sbjct:   483 YPNVFSHSTLATEEELEPFSQYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGH 537

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query:     6 VSTLRN-YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVE 64
             +S LR  +    K+  L    EL+ F NH+SQMAALD++VS+ S+ FIP+Y GNMA+ VE
Sbjct:   348 LSVLREAFPRIVKKEMLLESAELQQFQNHSSQMAALDFMVSVASNTFIPTYDGNMAKVVE 407

Query:    65 VH 66
              H
Sbjct:   408 GH 409

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/55 (52%), Positives = 41/55 (74%)

Query:    12 YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             Y +      LA+ EELEPF  + +++AALDYIV++ESDVF+ +Y GNMA+AV+ H
Sbjct:   487 YPNVFAHSYLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGH 541

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query:    11 NYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             ++    K+  L    EL+ F NH+SQMAALD+IVS+ S+ FIP+Y GNMA+ VE H
Sbjct:   378 SFPRIVKKEMLLDPTELQQFQNHSSQMAALDFIVSVASNTFIPTYYGNMAKVVEGH 433

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query:    12 YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             + +  ++  L    +L    NH+SQMAALDY++S+ESD+F+P+Y GNMA+ VE H
Sbjct:   371 FPNVVRKETLLDSSDLSFCKNHSSQMAALDYLISLESDIFVPTYYGNMAKVVEGH 425

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query:    21 LASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             LA+ EEL PF NH + +A LDYIV+++S+VF+ +Y GNMA+AV+ H
Sbjct:   521 LATKEELSPFNNHQNMLAGLDYIVALQSEVFLYTYDGNMAKAVQGH 566

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2167311 AT5G63390 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query:    10 RNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVE 64
             + +S+   +  LA   EL P+ N +S +AA+DYIVS+ SDVFIPS+ GNMA+A++
Sbjct:   425 KEFSNLVTKETLAHKGELLPYTNRSSALAAIDYIVSLSSDVFIPSHGGNMAKAMQ 479

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query:    12 YSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
             + +  ++  L    +L+   NH+SQMAALDY+V++ESD+F+P+  GNMAR VE H
Sbjct:   371 FPNVVRKETLLESSDLDFCRNHSSQMAALDYLVALESDIFVPTNDGNMARVVEGH 425

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	70
cd11299	290	cd11299, O-FucT_plant, GDP-fucose protein O-fucosy	2e-19
pfam10250	315	pfam10250, O-FucT, GDP-fucose protein O-fucosyltra	1e-11

>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily

 Score = 78.4 bits (194), Expect = 2e-19
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 21  LASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
           LA+ EEL PF  H+S++AALDYIV +ESDVF+P+Y GN A+AV  H
Sbjct: 236 LATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGH 281

Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 20  KLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66
            LAS EEL PF      +AALDYI+ + +DVFI +     +  V+  
Sbjct: 261 SLASKEELAPFKG--GGLAALDYIICLHADVFIGTCGSTFSAFVKRE 305

This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF10250	351	O-FucT: GDP-fucose protein O-fucosyltransferase; I	99.38

>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats

Probab=99.38  E-value=7.9e-14  Score=100.18  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=44.7

Q ss_pred             cchhhhHHhccCceecCCCCCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHHhhhhhccc
Q 045419            3 RPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLML   69 (70)
Q Consensus         3 ~~m~~L~~~fPn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR~y   69 (70)
                      +.|++|++.||++++|+.+.+.+|+++|.+  .++|+||++||+.||+||.|....|...|.++|.|
T Consensus       277 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~  341 (351)
T PF10250_consen  277 RRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHY  341 (351)
T ss_dssp             ------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCc
Confidence            468999999999999999999999999976  99999999999999999999977799999999986

Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
4ap5_A	408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	94.95
3zy2_A	362	Putative GDP-fucose protein O-fucosyltransferase;	92.06

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*

Probab=94.95  E-value=0.023  Score=41.53  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             hhhhHHhccCceecCCCCCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHHhhhhhc
Q 045419            5 VVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHL   67 (70)
Q Consensus         5 m~~L~~~fPn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR   67 (70)
                      +..|++.+|.++.-..  ..+++..+  .....|.||-.||..||+||-|....|...|.=.|
T Consensus       318 ~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR  376 (408)
T 4ap5_A          318 YEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEER  376 (408)
T ss_dssp             HHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHH
Confidence            4567888887764332  33444444  34567999999999999999999998888876655

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*

Probab=92.06  E-value=0.095  Score=39.72  Aligned_cols=31  Identities=10%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             HHHHHHHhhhccceeeecCCCcHHHhhhhhc
Q 045419           37 MAALDYIVSIESDVFIPSYSGNMARAVEVHL   67 (70)
Q Consensus        37 ~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR   67 (70)
                      .|+||-+||.+||+||.+....|...|.=.|
T Consensus       314 ~a~ID~~I~~~A~~FIGN~~SSFSa~I~rER  344 (362)
T 3zy2_A          314 DMYTSLAIMGRADLFVGNCVSTFSHIVKRER  344 (362)
T ss_dssp             CHHHHHHHHHHSSEEEECTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHhCCEeecCccccccHHHHHHH
Confidence            7999999999999999999888887766554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00